Multiple sequence alignment - TraesCS2D01G047500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G047500 chr2D 100.000 2927 0 0 1 2927 17451647 17454573 0.000000e+00 5406.0
1 TraesCS2D01G047500 chr2D 100.000 204 0 0 3261 3464 17454907 17455110 9.080000e-101 377.0
2 TraesCS2D01G047500 chr2D 97.790 181 2 2 1 180 48011900 48011721 9.340000e-81 311.0
3 TraesCS2D01G047500 chr2B 88.864 2209 129 46 385 2553 29761880 29759749 0.000000e+00 2608.0
4 TraesCS2D01G047500 chr2B 97.674 43 1 0 2590 2632 29746766 29746724 1.330000e-09 75.0
5 TraesCS2D01G047500 chr2A 93.893 1179 51 13 1201 2362 18833825 18834999 0.000000e+00 1759.0
6 TraesCS2D01G047500 chr2A 91.383 1056 55 7 184 1217 18832763 18833804 0.000000e+00 1413.0
7 TraesCS2D01G047500 chr2A 88.000 175 7 5 2417 2591 18835002 18835162 9.810000e-46 195.0
8 TraesCS2D01G047500 chr2A 87.619 105 13 0 3317 3421 18836502 18836606 4.690000e-24 122.0
9 TraesCS2D01G047500 chr2A 92.727 55 4 0 187 241 94276780 94276726 2.870000e-11 80.5
10 TraesCS2D01G047500 chr2A 97.674 43 1 0 2591 2633 18835216 18835258 1.330000e-09 75.0
11 TraesCS2D01G047500 chr7D 97.268 183 3 2 1 182 58171594 58171413 3.360000e-80 309.0
12 TraesCS2D01G047500 chr1D 97.778 180 2 2 1 179 314157123 314157301 3.360000e-80 309.0
13 TraesCS2D01G047500 chr1D 97.765 179 3 1 1 179 438143937 438144114 1.210000e-79 307.0
14 TraesCS2D01G047500 chr1D 94.359 195 9 2 1 194 26018548 26018741 7.270000e-77 298.0
15 TraesCS2D01G047500 chr6D 97.765 179 2 2 1 178 43519128 43518951 1.210000e-79 307.0
16 TraesCS2D01G047500 chr5D 96.739 184 5 1 1 184 503828158 503828340 4.340000e-79 305.0
17 TraesCS2D01G047500 chr3D 97.207 179 3 2 1 178 285169192 285169369 5.620000e-78 302.0
18 TraesCS2D01G047500 chr3D 97.207 179 3 2 1 178 582241213 582241390 5.620000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G047500 chr2D 17451647 17455110 3463 False 2891.5 5406 100.0000 1 3464 2 chr2D.!!$F1 3463
1 TraesCS2D01G047500 chr2B 29759749 29761880 2131 True 2608.0 2608 88.8640 385 2553 1 chr2B.!!$R2 2168
2 TraesCS2D01G047500 chr2A 18832763 18836606 3843 False 712.8 1759 91.7138 184 3421 5 chr2A.!!$F1 3237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 579 0.038892 GAGCAACGTGGACTTCCGTA 60.039 55.0 0.0 0.0 39.43 4.02 F
2026 2135 0.109226 CCTTCGAGTTCTCCACCGAC 60.109 60.0 0.0 0.0 30.64 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2236 2345 0.613853 AAGGCCACTTGCATCATGCT 60.614 50.0 11.84 0.0 45.31 3.79 R
3315 4069 0.251354 GTCCAGCAGATGAAGAGGCA 59.749 55.0 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
23 24 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
24 25 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
25 26 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
26 27 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
27 28 2.282887 CAACCGGGACCAAAGGGG 60.283 66.667 6.32 0.00 44.81 4.79
28 29 4.295199 AACCGGGACCAAAGGGGC 62.295 66.667 6.32 0.00 43.93 5.80
36 37 4.676951 CCAAAGGGGCCAGCCGAA 62.677 66.667 4.39 0.00 36.85 4.30
37 38 3.373565 CAAAGGGGCCAGCCGAAC 61.374 66.667 4.39 0.00 36.85 3.95
38 39 4.678743 AAAGGGGCCAGCCGAACC 62.679 66.667 4.39 0.00 36.85 3.62
49 50 3.131478 CCGAACCGGGACCAATGC 61.131 66.667 6.32 0.00 44.15 3.56
50 51 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
51 52 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
52 53 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
87 88 4.410400 CCCCTGGCCTCACGAACC 62.410 72.222 3.32 0.00 0.00 3.62
88 89 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
89 90 4.760047 CCTGGCCTCACGAACCGG 62.760 72.222 3.32 0.00 0.00 5.28
90 91 4.760047 CTGGCCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
92 93 4.754667 GGCCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
93 94 4.754667 GCCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
94 95 3.307906 CCTCACGAACCGGGACCA 61.308 66.667 6.32 0.00 32.99 4.02
95 96 2.261671 CTCACGAACCGGGACCAG 59.738 66.667 6.32 0.00 32.99 4.00
96 97 2.522436 TCACGAACCGGGACCAGT 60.522 61.111 6.32 0.00 32.99 4.00
97 98 2.357034 CACGAACCGGGACCAGTG 60.357 66.667 6.32 4.87 28.17 3.66
98 99 4.309950 ACGAACCGGGACCAGTGC 62.310 66.667 6.32 0.00 0.00 4.40
100 101 4.717313 GAACCGGGACCAGTGCCC 62.717 72.222 6.32 0.00 42.41 5.36
104 105 4.047125 CGGGACCAGTGCCCCATT 62.047 66.667 16.22 0.00 42.92 3.16
105 106 2.362889 GGGACCAGTGCCCCATTG 60.363 66.667 12.46 0.00 42.24 2.82
106 107 2.362889 GGACCAGTGCCCCATTGG 60.363 66.667 5.35 5.35 45.06 3.16
109 110 2.362889 CCAGTGCCCCATTGGTCC 60.363 66.667 1.20 0.00 36.65 4.46
110 111 2.362889 CAGTGCCCCATTGGTCCC 60.363 66.667 1.20 0.00 36.04 4.46
111 112 4.047125 AGTGCCCCATTGGTCCCG 62.047 66.667 1.20 0.00 36.04 5.14
114 115 4.376170 GCCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 36.04 4.44
115 116 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
116 117 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
117 118 1.378514 CCCATTGGTCCCGGTTCTG 60.379 63.158 0.00 0.00 0.00 3.02
118 119 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
119 120 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
124 125 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
125 126 2.055299 TCCCGGTTCTGGACTGAAC 58.945 57.895 12.04 12.04 43.88 3.18
129 130 4.695560 GTTCTGGACTGAACCGGG 57.304 61.111 6.32 0.00 40.10 5.73
130 131 2.055299 GTTCTGGACTGAACCGGGA 58.945 57.895 6.32 0.00 40.10 5.14
131 132 0.320508 GTTCTGGACTGAACCGGGAC 60.321 60.000 6.32 0.00 40.10 4.46
132 133 0.471211 TTCTGGACTGAACCGGGACT 60.471 55.000 6.32 0.00 36.97 3.85
133 134 0.406750 TCTGGACTGAACCGGGACTA 59.593 55.000 6.32 0.00 36.97 2.59
134 135 1.203087 TCTGGACTGAACCGGGACTAA 60.203 52.381 6.32 0.00 36.97 2.24
135 136 1.831736 CTGGACTGAACCGGGACTAAT 59.168 52.381 6.32 0.00 33.06 1.73
136 137 1.553248 TGGACTGAACCGGGACTAATG 59.447 52.381 6.32 0.00 0.00 1.90
137 138 1.134491 GGACTGAACCGGGACTAATGG 60.134 57.143 6.32 0.00 0.00 3.16
138 139 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
139 140 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
140 141 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
141 142 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
142 143 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
143 144 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
144 145 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
156 157 3.636231 CTGACCCGGCCTGAACCA 61.636 66.667 0.00 0.00 0.00 3.67
157 158 3.172106 TGACCCGGCCTGAACCAA 61.172 61.111 0.00 0.00 0.00 3.67
158 159 2.114411 GACCCGGCCTGAACCAAA 59.886 61.111 0.00 0.00 0.00 3.28
159 160 1.971695 GACCCGGCCTGAACCAAAG 60.972 63.158 0.00 0.00 0.00 2.77
160 161 3.373565 CCCGGCCTGAACCAAAGC 61.374 66.667 0.00 0.00 0.00 3.51
161 162 3.373565 CCGGCCTGAACCAAAGCC 61.374 66.667 0.00 0.00 42.18 4.35
162 163 3.373565 CGGCCTGAACCAAAGCCC 61.374 66.667 0.00 0.00 42.66 5.19
163 164 2.118294 GGCCTGAACCAAAGCCCT 59.882 61.111 0.00 0.00 39.60 5.19
164 165 1.979155 GGCCTGAACCAAAGCCCTC 60.979 63.158 0.00 0.00 39.60 4.30
165 166 1.075659 GCCTGAACCAAAGCCCTCT 59.924 57.895 0.00 0.00 0.00 3.69
166 167 0.540597 GCCTGAACCAAAGCCCTCTT 60.541 55.000 0.00 0.00 0.00 2.85
167 168 2.001076 CCTGAACCAAAGCCCTCTTT 57.999 50.000 0.00 0.00 42.92 2.52
168 169 2.319844 CCTGAACCAAAGCCCTCTTTT 58.680 47.619 0.00 0.00 40.35 2.27
169 170 2.297315 CCTGAACCAAAGCCCTCTTTTC 59.703 50.000 0.00 0.00 40.35 2.29
170 171 3.225940 CTGAACCAAAGCCCTCTTTTCT 58.774 45.455 0.00 0.00 40.35 2.52
171 172 4.398319 CTGAACCAAAGCCCTCTTTTCTA 58.602 43.478 0.00 0.00 40.35 2.10
172 173 4.142038 TGAACCAAAGCCCTCTTTTCTAC 58.858 43.478 0.00 0.00 40.35 2.59
173 174 4.141251 TGAACCAAAGCCCTCTTTTCTACT 60.141 41.667 0.00 0.00 40.35 2.57
174 175 5.072600 TGAACCAAAGCCCTCTTTTCTACTA 59.927 40.000 0.00 0.00 40.35 1.82
175 176 5.167303 ACCAAAGCCCTCTTTTCTACTAG 57.833 43.478 0.00 0.00 40.35 2.57
176 177 4.597940 ACCAAAGCCCTCTTTTCTACTAGT 59.402 41.667 0.00 0.00 40.35 2.57
177 178 4.938226 CCAAAGCCCTCTTTTCTACTAGTG 59.062 45.833 5.39 0.00 40.35 2.74
178 179 4.828072 AAGCCCTCTTTTCTACTAGTGG 57.172 45.455 5.39 1.87 0.00 4.00
179 180 2.502130 AGCCCTCTTTTCTACTAGTGGC 59.498 50.000 5.39 6.30 0.00 5.01
180 181 2.236395 GCCCTCTTTTCTACTAGTGGCA 59.764 50.000 5.39 0.00 0.00 4.92
181 182 3.680196 GCCCTCTTTTCTACTAGTGGCAG 60.680 52.174 5.39 0.00 0.00 4.85
182 183 3.515901 CCCTCTTTTCTACTAGTGGCAGT 59.484 47.826 5.39 0.00 0.00 4.40
206 207 0.179056 CCCACTATGTAGGCAACGGG 60.179 60.000 0.00 0.00 46.39 5.28
227 228 2.066393 AAGGATCAGCTAGGCGGCA 61.066 57.895 13.08 0.00 34.17 5.69
249 250 4.743057 TGATTGATGATCTTCGAGTGGT 57.257 40.909 4.94 0.00 35.69 4.16
356 357 4.913924 GCATGTTTGTCTTGTTGTCTCATC 59.086 41.667 0.00 0.00 0.00 2.92
405 406 7.389803 TCTATTTGTTGTGTGAATATGGTGG 57.610 36.000 0.00 0.00 0.00 4.61
481 483 6.380095 TGCGGTTGAACTACATAAAAGTTT 57.620 33.333 0.00 0.00 37.31 2.66
571 579 0.038892 GAGCAACGTGGACTTCCGTA 60.039 55.000 0.00 0.00 39.43 4.02
575 583 0.886563 AACGTGGACTTCCGTAGAGG 59.113 55.000 0.00 0.00 39.43 3.69
578 586 0.824759 GTGGACTTCCGTAGAGGCAT 59.175 55.000 0.00 0.00 40.77 4.40
644 653 1.888215 CAAGAGCTTGCAAGAGTGGA 58.112 50.000 30.39 0.00 33.45 4.02
645 654 2.224606 CAAGAGCTTGCAAGAGTGGAA 58.775 47.619 30.39 0.00 33.45 3.53
654 663 1.289160 CAAGAGTGGAAGGGATGGGA 58.711 55.000 0.00 0.00 0.00 4.37
676 685 1.002134 AATGCAACGAGTGGGAGGG 60.002 57.895 0.00 0.00 0.00 4.30
749 758 1.166531 GCACGAACTTTCCTGTGGCT 61.167 55.000 0.00 0.00 33.04 4.75
769 778 2.106131 ACAAGACACGTGCGAGCA 59.894 55.556 17.22 0.00 0.00 4.26
809 839 3.047877 CGCTCCAACCAACCGGAC 61.048 66.667 9.46 0.00 35.59 4.79
812 842 2.448931 TCCAACCAACCGGACCCT 60.449 61.111 9.46 0.00 35.59 4.34
832 862 1.133167 TGTGAGGAGTGAGGAGGAACA 60.133 52.381 0.00 0.00 0.00 3.18
893 923 1.781025 TTGCCAAGAAAGCACGTCCG 61.781 55.000 0.00 0.00 40.69 4.79
895 925 2.250939 CCAAGAAAGCACGTCCGCA 61.251 57.895 0.36 0.00 0.00 5.69
1029 1064 1.522806 ACGAGCGAGCGAGAGAGAT 60.523 57.895 4.36 0.00 34.83 2.75
1203 1238 1.613630 TGAGTCTCCCTCCCCAAGC 60.614 63.158 0.00 0.00 39.65 4.01
1229 1301 3.457625 CTCTCCATCCCTGCCGCTG 62.458 68.421 0.00 0.00 0.00 5.18
1244 1316 0.523968 CGCTGCCGTCCATGAATTTG 60.524 55.000 0.00 0.00 0.00 2.32
1258 1330 5.287752 CCATGAATTTGTCTTCATCTTTGCG 59.712 40.000 0.00 0.00 42.52 4.85
1270 1342 2.760634 TCTTTGCGTTCTCCATAGCA 57.239 45.000 0.00 0.00 37.89 3.49
1395 1487 1.376812 GCCGACGTCCCTTTCCATT 60.377 57.895 10.58 0.00 0.00 3.16
1444 1536 0.461548 GACCACTCGATCAGCATCCA 59.538 55.000 0.00 0.00 0.00 3.41
1565 1665 2.246719 ACAGCAACTGACTTGTCCTC 57.753 50.000 0.78 0.00 35.18 3.71
1852 1961 2.745884 GCCGCATGGTGCTACACA 60.746 61.111 0.00 0.00 42.25 3.72
2026 2135 0.109226 CCTTCGAGTTCTCCACCGAC 60.109 60.000 0.00 0.00 30.64 4.79
2301 2418 0.109873 ACGTGACGATCGAAGTGACC 60.110 55.000 24.34 1.14 0.00 4.02
2400 2518 3.057315 ACGAAGTGATTTTTGGCATCCTG 60.057 43.478 0.00 0.00 42.51 3.86
2408 2526 4.301072 TTTTTGGCATCCTGCTACTACT 57.699 40.909 0.00 0.00 44.28 2.57
2414 2532 2.164624 GCATCCTGCTACTACTATCCCG 59.835 54.545 0.00 0.00 40.96 5.14
2415 2533 3.422796 CATCCTGCTACTACTATCCCGT 58.577 50.000 0.00 0.00 0.00 5.28
2451 2569 6.561737 TCCAAATTCAGCGTGTAACAAATA 57.438 33.333 0.00 0.00 35.74 1.40
2452 2570 6.971602 TCCAAATTCAGCGTGTAACAAATAA 58.028 32.000 0.00 0.00 35.74 1.40
2453 2571 7.598278 TCCAAATTCAGCGTGTAACAAATAAT 58.402 30.769 0.00 0.00 35.74 1.28
2454 2572 7.540400 TCCAAATTCAGCGTGTAACAAATAATG 59.460 33.333 0.00 0.00 35.74 1.90
2455 2573 7.201427 CCAAATTCAGCGTGTAACAAATAATGG 60.201 37.037 0.00 0.00 35.74 3.16
2456 2574 5.950758 TTCAGCGTGTAACAAATAATGGT 57.049 34.783 0.00 0.00 35.74 3.55
2457 2575 7.618502 ATTCAGCGTGTAACAAATAATGGTA 57.381 32.000 0.00 0.00 35.74 3.25
2458 2576 7.618502 TTCAGCGTGTAACAAATAATGGTAT 57.381 32.000 0.00 0.00 32.74 2.73
2459 2577 8.719560 TTCAGCGTGTAACAAATAATGGTATA 57.280 30.769 0.00 0.00 32.74 1.47
2485 2605 7.654287 ATTCCTAGTATCCATCCCATTTTCT 57.346 36.000 0.00 0.00 0.00 2.52
2493 2613 8.336235 AGTATCCATCCCATTTTCTAGACAAAA 58.664 33.333 0.00 0.00 0.00 2.44
2531 2651 8.355169 GTGGATGTTACCTTTGTCTATCGTATA 58.645 37.037 0.00 0.00 0.00 1.47
2532 2652 8.573885 TGGATGTTACCTTTGTCTATCGTATAG 58.426 37.037 0.00 0.00 0.00 1.31
2562 2682 6.309980 TGAATATTATTTTTGCGGTGTTGCTG 59.690 34.615 0.00 0.00 35.36 4.41
2565 2685 2.593346 TTTTTGCGGTGTTGCTGAAT 57.407 40.000 0.00 0.00 35.36 2.57
2573 2693 2.771089 GGTGTTGCTGAATCTGAGTCA 58.229 47.619 7.64 7.64 0.00 3.41
2586 2706 2.226674 TCTGAGTCAGCTGTGTTAGTCG 59.773 50.000 15.72 4.02 0.00 4.18
2618 2792 4.607955 CCGTATGATTTAGAGCGTCAAGA 58.392 43.478 0.00 0.00 0.00 3.02
2633 2807 0.453282 CAAGATTCGTGCGTTGGCTG 60.453 55.000 0.00 0.00 40.82 4.85
2635 2809 0.037697 AGATTCGTGCGTTGGCTGTA 60.038 50.000 0.00 0.00 40.82 2.74
2637 2811 2.159156 AGATTCGTGCGTTGGCTGTATA 60.159 45.455 0.00 0.00 40.82 1.47
2638 2812 1.352114 TTCGTGCGTTGGCTGTATAC 58.648 50.000 0.00 0.00 40.82 1.47
2639 2813 0.799152 TCGTGCGTTGGCTGTATACG 60.799 55.000 0.00 0.00 40.82 3.06
2641 2815 0.643820 GTGCGTTGGCTGTATACGTC 59.356 55.000 0.00 0.00 40.82 4.34
2642 2816 0.528924 TGCGTTGGCTGTATACGTCT 59.471 50.000 0.00 0.00 40.82 4.18
2643 2817 1.067425 TGCGTTGGCTGTATACGTCTT 60.067 47.619 0.00 0.00 40.82 3.01
2644 2818 1.997606 GCGTTGGCTGTATACGTCTTT 59.002 47.619 0.00 0.00 37.58 2.52
2645 2819 2.222729 GCGTTGGCTGTATACGTCTTTG 60.223 50.000 0.00 0.00 37.58 2.77
2646 2820 2.347452 CGTTGGCTGTATACGTCTTTGG 59.653 50.000 0.00 0.00 0.00 3.28
2647 2821 2.018542 TGGCTGTATACGTCTTTGGC 57.981 50.000 0.00 0.00 0.00 4.52
2648 2822 1.553248 TGGCTGTATACGTCTTTGGCT 59.447 47.619 0.00 0.00 0.00 4.75
2649 2823 1.933853 GGCTGTATACGTCTTTGGCTG 59.066 52.381 0.00 0.00 0.00 4.85
2650 2824 1.327764 GCTGTATACGTCTTTGGCTGC 59.672 52.381 0.00 0.00 0.00 5.25
2651 2825 1.588404 CTGTATACGTCTTTGGCTGCG 59.412 52.381 0.00 0.00 0.00 5.18
2652 2826 1.067425 TGTATACGTCTTTGGCTGCGT 60.067 47.619 0.00 0.00 40.76 5.24
2653 2827 1.997606 GTATACGTCTTTGGCTGCGTT 59.002 47.619 0.00 0.00 38.56 4.84
2654 2828 1.519408 ATACGTCTTTGGCTGCGTTT 58.481 45.000 0.00 0.00 38.56 3.60
2655 2829 1.301423 TACGTCTTTGGCTGCGTTTT 58.699 45.000 0.00 0.00 38.56 2.43
2656 2830 0.454196 ACGTCTTTGGCTGCGTTTTT 59.546 45.000 0.00 0.00 33.54 1.94
2657 2831 0.845768 CGTCTTTGGCTGCGTTTTTG 59.154 50.000 0.00 0.00 0.00 2.44
2658 2832 1.797348 CGTCTTTGGCTGCGTTTTTGT 60.797 47.619 0.00 0.00 0.00 2.83
2659 2833 2.267426 GTCTTTGGCTGCGTTTTTGTT 58.733 42.857 0.00 0.00 0.00 2.83
2695 2869 4.951715 AGACAATCTTGGCTGCATATTTGA 59.048 37.500 0.50 0.00 46.96 2.69
2697 2871 6.097839 AGACAATCTTGGCTGCATATTTGAAT 59.902 34.615 0.50 0.00 46.96 2.57
2698 2872 6.046593 ACAATCTTGGCTGCATATTTGAATG 58.953 36.000 0.50 0.00 0.00 2.67
2699 2873 5.864418 ATCTTGGCTGCATATTTGAATGT 57.136 34.783 0.50 0.00 0.00 2.71
2700 2874 5.252969 TCTTGGCTGCATATTTGAATGTC 57.747 39.130 0.50 0.00 0.00 3.06
2701 2875 3.696281 TGGCTGCATATTTGAATGTCG 57.304 42.857 0.50 0.00 0.00 4.35
2704 2878 2.859806 GCTGCATATTTGAATGTCGGGC 60.860 50.000 0.00 0.00 0.00 6.13
2705 2879 1.333308 TGCATATTTGAATGTCGGGCG 59.667 47.619 0.00 0.00 0.00 6.13
2707 2881 1.266718 CATATTTGAATGTCGGGCGGG 59.733 52.381 0.00 0.00 0.00 6.13
2708 2882 1.098712 TATTTGAATGTCGGGCGGGC 61.099 55.000 0.00 0.00 0.00 6.13
2709 2883 3.731726 TATTTGAATGTCGGGCGGGCA 62.732 52.381 0.65 0.65 0.00 5.36
2710 2884 3.851897 TTGAATGTCGGGCGGGCAA 62.852 57.895 2.72 0.00 0.00 4.52
2711 2885 3.810896 GAATGTCGGGCGGGCAAC 61.811 66.667 2.72 1.51 0.00 4.17
2712 2886 4.652131 AATGTCGGGCGGGCAACA 62.652 61.111 2.72 10.58 39.74 3.33
2714 2888 4.877619 TGTCGGGCGGGCAACAAA 62.878 61.111 3.27 0.00 39.74 2.83
2715 2889 3.597728 GTCGGGCGGGCAACAAAA 61.598 61.111 3.27 0.00 39.74 2.44
2716 2890 3.291383 TCGGGCGGGCAACAAAAG 61.291 61.111 3.27 0.00 39.74 2.27
2717 2891 3.291383 CGGGCGGGCAACAAAAGA 61.291 61.111 3.27 0.00 39.74 2.52
2718 2892 2.338620 GGGCGGGCAACAAAAGAC 59.661 61.111 3.27 0.00 39.74 3.01
2719 2893 2.050442 GGCGGGCAACAAAAGACG 60.050 61.111 0.00 0.00 39.74 4.18
2720 2894 2.050442 GCGGGCAACAAAAGACGG 60.050 61.111 0.00 0.00 39.74 4.79
2721 2895 2.548295 GCGGGCAACAAAAGACGGA 61.548 57.895 0.00 0.00 39.74 4.69
2722 2896 1.281656 CGGGCAACAAAAGACGGAC 59.718 57.895 0.00 0.00 39.74 4.79
2723 2897 1.164041 CGGGCAACAAAAGACGGACT 61.164 55.000 0.00 0.00 39.74 3.85
2727 2901 2.098443 GGCAACAAAAGACGGACTTTCA 59.902 45.455 5.95 0.00 46.55 2.69
2728 2902 3.105937 GCAACAAAAGACGGACTTTCAC 58.894 45.455 5.95 0.00 46.55 3.18
2729 2903 3.350912 CAACAAAAGACGGACTTTCACG 58.649 45.455 5.95 1.83 46.55 4.35
2730 2904 1.937899 ACAAAAGACGGACTTTCACGG 59.062 47.619 5.95 0.69 46.55 4.94
2733 2907 0.748450 AAGACGGACTTTCACGGACA 59.252 50.000 0.00 0.00 34.94 4.02
2734 2908 0.031721 AGACGGACTTTCACGGACAC 59.968 55.000 0.00 0.00 0.00 3.67
2735 2909 0.031721 GACGGACTTTCACGGACACT 59.968 55.000 0.00 0.00 0.00 3.55
2736 2910 0.462789 ACGGACTTTCACGGACACTT 59.537 50.000 0.00 0.00 0.00 3.16
2737 2911 1.682854 ACGGACTTTCACGGACACTTA 59.317 47.619 0.00 0.00 0.00 2.24
2741 2915 4.925054 CGGACTTTCACGGACACTTAATTA 59.075 41.667 0.00 0.00 0.00 1.40
2742 2916 5.406175 CGGACTTTCACGGACACTTAATTAA 59.594 40.000 0.00 0.00 0.00 1.40
2743 2917 6.073657 CGGACTTTCACGGACACTTAATTAAA 60.074 38.462 0.00 0.00 0.00 1.52
2745 2919 6.962686 ACTTTCACGGACACTTAATTAAACC 58.037 36.000 0.00 0.93 0.00 3.27
2746 2920 6.769341 ACTTTCACGGACACTTAATTAAACCT 59.231 34.615 0.00 0.00 0.00 3.50
2747 2921 6.790285 TTCACGGACACTTAATTAAACCTC 57.210 37.500 0.00 0.00 0.00 3.85
2748 2922 5.856156 TCACGGACACTTAATTAAACCTCA 58.144 37.500 0.00 0.00 0.00 3.86
2749 2923 5.929992 TCACGGACACTTAATTAAACCTCAG 59.070 40.000 0.00 0.00 0.00 3.35
2750 2924 4.694037 ACGGACACTTAATTAAACCTCAGC 59.306 41.667 0.00 0.00 0.00 4.26
2751 2925 4.094442 CGGACACTTAATTAAACCTCAGCC 59.906 45.833 0.00 0.00 0.00 4.85
2752 2926 5.007682 GGACACTTAATTAAACCTCAGCCA 58.992 41.667 0.00 0.00 0.00 4.75
2753 2927 5.475564 GGACACTTAATTAAACCTCAGCCAA 59.524 40.000 0.00 0.00 0.00 4.52
2754 2928 6.152831 GGACACTTAATTAAACCTCAGCCAAT 59.847 38.462 0.00 0.00 0.00 3.16
2755 2929 7.338449 GGACACTTAATTAAACCTCAGCCAATA 59.662 37.037 0.00 0.00 0.00 1.90
2757 2931 9.084533 ACACTTAATTAAACCTCAGCCAATAAA 57.915 29.630 0.00 0.00 0.00 1.40
2758 2932 9.921637 CACTTAATTAAACCTCAGCCAATAAAA 57.078 29.630 0.00 0.00 0.00 1.52
2762 2936 7.978099 ATTAAACCTCAGCCAATAAAATCCT 57.022 32.000 0.00 0.00 0.00 3.24
2765 2939 6.775594 AACCTCAGCCAATAAAATCCTAAC 57.224 37.500 0.00 0.00 0.00 2.34
2766 2940 5.201243 ACCTCAGCCAATAAAATCCTAACC 58.799 41.667 0.00 0.00 0.00 2.85
2768 2942 5.067805 CCTCAGCCAATAAAATCCTAACCAC 59.932 44.000 0.00 0.00 0.00 4.16
2771 2945 4.016572 AGCCAATAAAATCCTAACCACCCT 60.017 41.667 0.00 0.00 0.00 4.34
2774 2948 6.428295 CCAATAAAATCCTAACCACCCTGTA 58.572 40.000 0.00 0.00 0.00 2.74
2775 2949 6.893005 CCAATAAAATCCTAACCACCCTGTAA 59.107 38.462 0.00 0.00 0.00 2.41
2776 2950 7.397761 CCAATAAAATCCTAACCACCCTGTAAA 59.602 37.037 0.00 0.00 0.00 2.01
2778 2952 8.762481 ATAAAATCCTAACCACCCTGTAAATC 57.238 34.615 0.00 0.00 0.00 2.17
2779 2953 4.790718 ATCCTAACCACCCTGTAAATCC 57.209 45.455 0.00 0.00 0.00 3.01
2783 2957 3.845109 AACCACCCTGTAAATCCCAAT 57.155 42.857 0.00 0.00 0.00 3.16
2784 2958 4.957606 AACCACCCTGTAAATCCCAATA 57.042 40.909 0.00 0.00 0.00 1.90
2786 2960 5.278127 ACCACCCTGTAAATCCCAATAAA 57.722 39.130 0.00 0.00 0.00 1.40
2787 2961 5.020795 ACCACCCTGTAAATCCCAATAAAC 58.979 41.667 0.00 0.00 0.00 2.01
2788 2962 4.404394 CCACCCTGTAAATCCCAATAAACC 59.596 45.833 0.00 0.00 0.00 3.27
2789 2963 4.404394 CACCCTGTAAATCCCAATAAACCC 59.596 45.833 0.00 0.00 0.00 4.11
2790 2964 3.964688 CCCTGTAAATCCCAATAAACCCC 59.035 47.826 0.00 0.00 0.00 4.95
2791 2965 3.964688 CCTGTAAATCCCAATAAACCCCC 59.035 47.826 0.00 0.00 0.00 5.40
2793 2967 5.103430 CCTGTAAATCCCAATAAACCCCCTA 60.103 44.000 0.00 0.00 0.00 3.53
2822 3576 1.070134 GCATTACTCGTAGGATGGGCA 59.930 52.381 0.00 0.00 0.00 5.36
2828 3582 1.000283 CTCGTAGGATGGGCATGTCTC 60.000 57.143 0.00 0.00 0.00 3.36
2834 3588 1.466856 GATGGGCATGTCTCTTTGCA 58.533 50.000 0.00 0.00 40.66 4.08
2843 3597 5.528690 GGCATGTCTCTTTGCATCAGTTATA 59.471 40.000 0.00 0.00 40.66 0.98
2844 3598 6.293298 GGCATGTCTCTTTGCATCAGTTATAG 60.293 42.308 0.00 0.00 40.66 1.31
2846 3600 5.118990 TGTCTCTTTGCATCAGTTATAGGC 58.881 41.667 0.00 0.00 0.00 3.93
2855 3609 5.116180 GCATCAGTTATAGGCTGTGTGTAA 58.884 41.667 0.00 0.00 35.60 2.41
2861 3615 2.736144 TAGGCTGTGTGTAAGGAACG 57.264 50.000 0.00 0.00 0.00 3.95
2872 3626 5.177511 GTGTGTAAGGAACGTAAAACTACCC 59.822 44.000 0.00 0.00 0.00 3.69
2877 3631 3.196469 AGGAACGTAAAACTACCCTAGGC 59.804 47.826 2.05 0.00 0.00 3.93
2896 3650 2.759535 GGCGACTAGGGTTTCTTACTCT 59.240 50.000 0.00 0.00 41.64 3.24
2897 3651 3.181488 GGCGACTAGGGTTTCTTACTCTC 60.181 52.174 0.00 0.00 38.87 3.20
2898 3652 3.442977 GCGACTAGGGTTTCTTACTCTCA 59.557 47.826 0.00 0.00 38.87 3.27
2899 3653 4.082354 GCGACTAGGGTTTCTTACTCTCAA 60.082 45.833 0.00 0.00 38.87 3.02
2917 3671 3.857909 GACTCCTTGTCGCCGTTC 58.142 61.111 0.00 0.00 35.81 3.95
3288 4042 5.578157 ACATTGTTGTCTTAGGTAGGGTT 57.422 39.130 0.00 0.00 0.00 4.11
3289 4043 5.948842 ACATTGTTGTCTTAGGTAGGGTTT 58.051 37.500 0.00 0.00 0.00 3.27
3290 4044 5.768164 ACATTGTTGTCTTAGGTAGGGTTTG 59.232 40.000 0.00 0.00 0.00 2.93
3291 4045 4.360951 TGTTGTCTTAGGTAGGGTTTGG 57.639 45.455 0.00 0.00 0.00 3.28
3292 4046 3.975312 TGTTGTCTTAGGTAGGGTTTGGA 59.025 43.478 0.00 0.00 0.00 3.53
3293 4047 4.041198 TGTTGTCTTAGGTAGGGTTTGGAG 59.959 45.833 0.00 0.00 0.00 3.86
3294 4048 3.178865 TGTCTTAGGTAGGGTTTGGAGG 58.821 50.000 0.00 0.00 0.00 4.30
3295 4049 2.504585 GTCTTAGGTAGGGTTTGGAGGG 59.495 54.545 0.00 0.00 0.00 4.30
3296 4050 2.114871 TCTTAGGTAGGGTTTGGAGGGT 59.885 50.000 0.00 0.00 0.00 4.34
3297 4051 2.747083 TAGGTAGGGTTTGGAGGGTT 57.253 50.000 0.00 0.00 0.00 4.11
3298 4052 2.747083 AGGTAGGGTTTGGAGGGTTA 57.253 50.000 0.00 0.00 0.00 2.85
3299 4053 2.558974 AGGTAGGGTTTGGAGGGTTAG 58.441 52.381 0.00 0.00 0.00 2.34
3300 4054 2.114871 AGGTAGGGTTTGGAGGGTTAGA 59.885 50.000 0.00 0.00 0.00 2.10
3301 4055 3.120898 GGTAGGGTTTGGAGGGTTAGAT 58.879 50.000 0.00 0.00 0.00 1.98
3302 4056 3.118000 GGTAGGGTTTGGAGGGTTAGATG 60.118 52.174 0.00 0.00 0.00 2.90
3303 4057 1.923148 AGGGTTTGGAGGGTTAGATGG 59.077 52.381 0.00 0.00 0.00 3.51
3304 4058 1.685180 GGGTTTGGAGGGTTAGATGGC 60.685 57.143 0.00 0.00 0.00 4.40
3305 4059 1.379527 GTTTGGAGGGTTAGATGGCG 58.620 55.000 0.00 0.00 0.00 5.69
3306 4060 0.254747 TTTGGAGGGTTAGATGGCGG 59.745 55.000 0.00 0.00 0.00 6.13
3307 4061 1.632018 TTGGAGGGTTAGATGGCGGG 61.632 60.000 0.00 0.00 0.00 6.13
3308 4062 1.764854 GGAGGGTTAGATGGCGGGA 60.765 63.158 0.00 0.00 0.00 5.14
3309 4063 1.749033 GAGGGTTAGATGGCGGGAG 59.251 63.158 0.00 0.00 0.00 4.30
3310 4064 1.759459 GAGGGTTAGATGGCGGGAGG 61.759 65.000 0.00 0.00 0.00 4.30
3345 4099 2.187946 GCTGGACAGGGTGGATCG 59.812 66.667 1.01 0.00 0.00 3.69
3366 4120 1.002502 AACCGCCAGGAGTAAAGGC 60.003 57.895 0.00 0.00 44.89 4.35
3372 4126 2.338577 CCAGGAGTAAAGGCAGGATG 57.661 55.000 0.00 0.00 40.87 3.51
3389 4143 4.100653 CAGGATGGCAGTTGATCTAGAGAA 59.899 45.833 0.00 0.00 0.00 2.87
3399 4153 6.203145 CAGTTGATCTAGAGAATGCCATGAAG 59.797 42.308 0.00 0.00 0.00 3.02
3417 4171 6.600882 ATGAAGAACATGAAGCTTGGAATT 57.399 33.333 2.10 0.00 37.87 2.17
3421 4175 4.834496 AGAACATGAAGCTTGGAATTGGAA 59.166 37.500 2.10 0.00 0.00 3.53
3422 4176 4.796038 ACATGAAGCTTGGAATTGGAAG 57.204 40.909 2.10 0.00 0.00 3.46
3423 4177 4.410099 ACATGAAGCTTGGAATTGGAAGA 58.590 39.130 2.10 0.00 0.00 2.87
3424 4178 4.461781 ACATGAAGCTTGGAATTGGAAGAG 59.538 41.667 2.10 0.00 0.00 2.85
3425 4179 4.371624 TGAAGCTTGGAATTGGAAGAGA 57.628 40.909 2.10 0.00 0.00 3.10
3426 4180 4.927049 TGAAGCTTGGAATTGGAAGAGAT 58.073 39.130 2.10 0.00 0.00 2.75
3427 4181 4.946157 TGAAGCTTGGAATTGGAAGAGATC 59.054 41.667 2.10 0.00 0.00 2.75
3428 4182 4.858965 AGCTTGGAATTGGAAGAGATCT 57.141 40.909 0.00 0.00 0.00 2.75
3429 4183 4.779696 AGCTTGGAATTGGAAGAGATCTC 58.220 43.478 15.29 15.29 0.00 2.75
3430 4184 3.882288 GCTTGGAATTGGAAGAGATCTCC 59.118 47.826 19.30 5.81 0.00 3.71
3431 4185 4.627255 GCTTGGAATTGGAAGAGATCTCCA 60.627 45.833 19.30 8.61 0.00 3.86
3432 4186 5.503927 CTTGGAATTGGAAGAGATCTCCAA 58.496 41.667 19.30 16.98 46.05 3.53
3437 4191 4.767578 TTGGAAGAGATCTCCAATCTGG 57.232 45.455 19.30 0.00 38.46 3.86
3438 4192 3.729108 TGGAAGAGATCTCCAATCTGGT 58.271 45.455 19.30 0.00 39.03 4.00
3439 4193 4.883759 TGGAAGAGATCTCCAATCTGGTA 58.116 43.478 19.30 2.49 39.03 3.25
3440 4194 5.280499 TGGAAGAGATCTCCAATCTGGTAA 58.720 41.667 19.30 0.00 39.03 2.85
3441 4195 5.726308 TGGAAGAGATCTCCAATCTGGTAAA 59.274 40.000 19.30 0.00 39.03 2.01
3442 4196 6.215431 TGGAAGAGATCTCCAATCTGGTAAAA 59.785 38.462 19.30 0.00 39.03 1.52
3443 4197 7.092264 TGGAAGAGATCTCCAATCTGGTAAAAT 60.092 37.037 19.30 0.00 39.03 1.82
3444 4198 7.443879 GGAAGAGATCTCCAATCTGGTAAAATC 59.556 40.741 19.30 0.00 39.03 2.17
3445 4199 7.443302 AGAGATCTCCAATCTGGTAAAATCA 57.557 36.000 19.30 0.00 39.03 2.57
3446 4200 7.507829 AGAGATCTCCAATCTGGTAAAATCAG 58.492 38.462 19.30 0.00 39.03 2.90
3447 4201 6.060788 AGATCTCCAATCTGGTAAAATCAGC 58.939 40.000 0.00 0.00 39.03 4.26
3448 4202 4.191544 TCTCCAATCTGGTAAAATCAGCG 58.808 43.478 0.00 0.00 39.03 5.18
3449 4203 2.682856 TCCAATCTGGTAAAATCAGCGC 59.317 45.455 0.00 0.00 39.03 5.92
3450 4204 2.539547 CCAATCTGGTAAAATCAGCGCG 60.540 50.000 0.00 0.00 31.35 6.86
3451 4205 2.309528 ATCTGGTAAAATCAGCGCGA 57.690 45.000 12.10 2.54 32.63 5.87
3452 4206 2.309528 TCTGGTAAAATCAGCGCGAT 57.690 45.000 12.10 0.00 35.12 4.58
3453 4207 1.933181 TCTGGTAAAATCAGCGCGATG 59.067 47.619 20.14 20.14 33.40 3.84
3454 4208 1.933181 CTGGTAAAATCAGCGCGATGA 59.067 47.619 30.70 30.70 33.40 2.92
3455 4209 2.351418 CTGGTAAAATCAGCGCGATGAA 59.649 45.455 32.16 12.26 33.40 2.57
3456 4210 2.942376 TGGTAAAATCAGCGCGATGAAT 59.058 40.909 32.16 21.43 33.40 2.57
3457 4211 3.002246 TGGTAAAATCAGCGCGATGAATC 59.998 43.478 32.16 15.68 33.40 2.52
3458 4212 3.248602 GGTAAAATCAGCGCGATGAATCT 59.751 43.478 32.16 19.37 33.40 2.40
3459 4213 4.260784 GGTAAAATCAGCGCGATGAATCTT 60.261 41.667 32.16 23.92 33.40 2.40
3460 4214 5.050363 GGTAAAATCAGCGCGATGAATCTTA 60.050 40.000 32.16 22.93 33.40 2.10
3461 4215 4.722203 AAATCAGCGCGATGAATCTTAG 57.278 40.909 32.16 0.00 33.40 2.18
3462 4216 3.650070 ATCAGCGCGATGAATCTTAGA 57.350 42.857 32.16 5.77 31.20 2.10
3463 4217 3.005341 TCAGCGCGATGAATCTTAGAG 57.995 47.619 26.68 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
7 8 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
8 9 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
9 10 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
10 11 2.282887 CCCCTTTGGTCCCGGTTG 60.283 66.667 0.00 0.00 0.00 3.77
11 12 4.295199 GCCCCTTTGGTCCCGGTT 62.295 66.667 0.00 0.00 36.04 4.44
14 15 4.740822 CTGGCCCCTTTGGTCCCG 62.741 72.222 0.00 0.00 38.27 5.14
19 20 4.676951 TTCGGCTGGCCCCTTTGG 62.677 66.667 0.00 0.00 37.09 3.28
20 21 3.373565 GTTCGGCTGGCCCCTTTG 61.374 66.667 0.00 0.00 0.00 2.77
21 22 4.678743 GGTTCGGCTGGCCCCTTT 62.679 66.667 0.00 0.00 0.00 3.11
29 30 3.622060 ATTGGTCCCGGTTCGGCTG 62.622 63.158 0.00 0.00 46.86 4.85
30 31 3.327404 ATTGGTCCCGGTTCGGCT 61.327 61.111 0.00 0.00 46.86 5.52
31 32 3.131478 CATTGGTCCCGGTTCGGC 61.131 66.667 0.00 0.00 46.86 5.54
33 34 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
34 35 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
70 71 4.410400 GGTTCGTGAGGCCAGGGG 62.410 72.222 5.01 0.00 0.00 4.79
71 72 4.760047 CGGTTCGTGAGGCCAGGG 62.760 72.222 5.01 0.00 0.00 4.45
72 73 4.760047 CCGGTTCGTGAGGCCAGG 62.760 72.222 5.01 0.00 0.00 4.45
73 74 4.760047 CCCGGTTCGTGAGGCCAG 62.760 72.222 5.01 0.00 0.00 4.85
75 76 4.754667 GTCCCGGTTCGTGAGGCC 62.755 72.222 0.00 0.00 0.00 5.19
76 77 4.754667 GGTCCCGGTTCGTGAGGC 62.755 72.222 0.00 0.00 0.00 4.70
77 78 3.296709 CTGGTCCCGGTTCGTGAGG 62.297 68.421 0.00 0.00 0.00 3.86
78 79 2.261671 CTGGTCCCGGTTCGTGAG 59.738 66.667 0.00 0.00 0.00 3.51
79 80 2.522436 ACTGGTCCCGGTTCGTGA 60.522 61.111 0.00 0.00 30.14 4.35
80 81 2.357034 CACTGGTCCCGGTTCGTG 60.357 66.667 0.00 0.00 32.44 4.35
81 82 4.309950 GCACTGGTCCCGGTTCGT 62.310 66.667 0.00 0.00 32.44 3.85
83 84 4.717313 GGGCACTGGTCCCGGTTC 62.717 72.222 0.00 0.00 33.43 3.62
89 90 2.362889 CCAATGGGGCACTGGTCC 60.363 66.667 0.00 0.00 38.40 4.46
90 91 2.440599 ACCAATGGGGCACTGGTC 59.559 61.111 3.55 0.00 39.27 4.02
91 92 2.440599 GACCAATGGGGCACTGGT 59.559 61.111 3.55 0.00 44.16 4.00
92 93 3.963124 GGGACCAATGGGGCACTGG 62.963 68.421 3.55 0.00 45.08 4.00
93 94 2.362889 GGGACCAATGGGGCACTG 60.363 66.667 3.55 0.00 45.08 3.66
97 98 4.376170 AACCGGGACCAATGGGGC 62.376 66.667 6.32 0.00 43.93 5.80
98 99 2.044352 GAACCGGGACCAATGGGG 60.044 66.667 6.32 0.00 44.81 4.96
99 100 1.378514 CAGAACCGGGACCAATGGG 60.379 63.158 6.32 0.00 41.29 4.00
100 101 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
101 102 1.682849 TCCAGAACCGGGACCAATG 59.317 57.895 6.32 0.00 0.00 2.82
102 103 4.243550 TCCAGAACCGGGACCAAT 57.756 55.556 6.32 0.00 0.00 3.16
107 108 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
108 109 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
112 113 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
113 114 0.471211 AGTCCCGGTTCAGTCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
114 115 0.406750 TAGTCCCGGTTCAGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
115 116 1.263356 TTAGTCCCGGTTCAGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
116 117 1.553248 CATTAGTCCCGGTTCAGTCCA 59.447 52.381 0.00 0.00 0.00 4.02
117 118 1.134491 CCATTAGTCCCGGTTCAGTCC 60.134 57.143 0.00 0.00 0.00 3.85
118 119 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
119 120 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
120 121 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
121 122 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
122 123 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
123 124 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
124 125 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
125 126 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
126 127 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
139 140 2.690653 TTTGGTTCAGGCCGGGTCAG 62.691 60.000 2.18 0.00 0.00 3.51
140 141 2.690653 CTTTGGTTCAGGCCGGGTCA 62.691 60.000 2.18 0.00 0.00 4.02
141 142 1.971695 CTTTGGTTCAGGCCGGGTC 60.972 63.158 2.18 0.00 0.00 4.46
142 143 2.115266 CTTTGGTTCAGGCCGGGT 59.885 61.111 2.18 0.00 0.00 5.28
143 144 3.373565 GCTTTGGTTCAGGCCGGG 61.374 66.667 2.18 0.00 0.00 5.73
144 145 3.373565 GGCTTTGGTTCAGGCCGG 61.374 66.667 0.00 0.00 35.08 6.13
145 146 3.373565 GGGCTTTGGTTCAGGCCG 61.374 66.667 0.00 0.00 46.22 6.13
147 148 0.540597 AAGAGGGCTTTGGTTCAGGC 60.541 55.000 0.00 0.00 36.08 4.85
148 149 2.001076 AAAGAGGGCTTTGGTTCAGG 57.999 50.000 0.00 0.00 42.54 3.86
149 150 3.225940 AGAAAAGAGGGCTTTGGTTCAG 58.774 45.455 0.00 0.00 43.32 3.02
150 151 3.312736 AGAAAAGAGGGCTTTGGTTCA 57.687 42.857 0.00 0.00 43.32 3.18
151 152 4.399219 AGTAGAAAAGAGGGCTTTGGTTC 58.601 43.478 0.00 0.00 43.32 3.62
152 153 4.455070 AGTAGAAAAGAGGGCTTTGGTT 57.545 40.909 0.00 0.00 43.32 3.67
153 154 4.597940 ACTAGTAGAAAAGAGGGCTTTGGT 59.402 41.667 3.59 0.00 43.32 3.67
154 155 4.938226 CACTAGTAGAAAAGAGGGCTTTGG 59.062 45.833 3.59 0.00 43.32 3.28
155 156 4.938226 CCACTAGTAGAAAAGAGGGCTTTG 59.062 45.833 3.59 0.00 43.32 2.77
156 157 4.565861 GCCACTAGTAGAAAAGAGGGCTTT 60.566 45.833 3.59 0.00 45.95 3.51
157 158 3.055021 GCCACTAGTAGAAAAGAGGGCTT 60.055 47.826 3.59 0.00 35.38 4.35
158 159 2.502130 GCCACTAGTAGAAAAGAGGGCT 59.498 50.000 3.59 0.00 35.38 5.19
159 160 2.236395 TGCCACTAGTAGAAAAGAGGGC 59.764 50.000 3.59 7.87 37.29 5.19
160 161 3.515901 ACTGCCACTAGTAGAAAAGAGGG 59.484 47.826 3.59 0.00 31.60 4.30
161 162 4.499183 CACTGCCACTAGTAGAAAAGAGG 58.501 47.826 3.59 0.00 31.60 3.69
162 163 4.021016 ACCACTGCCACTAGTAGAAAAGAG 60.021 45.833 3.59 0.00 31.60 2.85
163 164 3.901844 ACCACTGCCACTAGTAGAAAAGA 59.098 43.478 3.59 0.00 31.60 2.52
164 165 4.273148 ACCACTGCCACTAGTAGAAAAG 57.727 45.455 3.59 0.00 31.60 2.27
165 166 4.020839 GGTACCACTGCCACTAGTAGAAAA 60.021 45.833 7.15 0.00 31.60 2.29
166 167 3.512724 GGTACCACTGCCACTAGTAGAAA 59.487 47.826 7.15 0.00 31.60 2.52
167 168 3.094572 GGTACCACTGCCACTAGTAGAA 58.905 50.000 7.15 0.00 31.60 2.10
168 169 2.731572 GGTACCACTGCCACTAGTAGA 58.268 52.381 7.15 0.00 31.60 2.59
206 207 0.249657 CCGCCTAGCTGATCCTTGTC 60.250 60.000 0.00 0.00 0.00 3.18
227 228 5.287674 ACCACTCGAAGATCATCAATCAT 57.712 39.130 0.00 0.00 36.79 2.45
249 250 1.079127 GAAGCGACTTGGCAGCCTA 60.079 57.895 14.15 3.69 34.64 3.93
356 357 5.879223 AGTGCATGAAGAGAAAATAGGTCTG 59.121 40.000 0.00 0.00 0.00 3.51
571 579 3.818180 CTGCATCCTTTTCTATGCCTCT 58.182 45.455 4.96 0.00 46.34 3.69
575 583 1.002033 CCGCTGCATCCTTTTCTATGC 60.002 52.381 0.00 0.00 46.92 3.14
578 586 1.089481 CGCCGCTGCATCCTTTTCTA 61.089 55.000 0.00 0.00 37.32 2.10
631 640 2.089980 CATCCCTTCCACTCTTGCAAG 58.910 52.381 20.81 20.81 0.00 4.01
636 645 1.849039 CATCCCATCCCTTCCACTCTT 59.151 52.381 0.00 0.00 0.00 2.85
637 646 1.516110 CATCCCATCCCTTCCACTCT 58.484 55.000 0.00 0.00 0.00 3.24
638 647 0.179006 GCATCCCATCCCTTCCACTC 60.179 60.000 0.00 0.00 0.00 3.51
639 648 0.920763 TGCATCCCATCCCTTCCACT 60.921 55.000 0.00 0.00 0.00 4.00
640 649 0.033208 TTGCATCCCATCCCTTCCAC 60.033 55.000 0.00 0.00 0.00 4.02
641 650 0.935942 ATTGCATCCCATCCCTTCCA 59.064 50.000 0.00 0.00 0.00 3.53
642 651 1.335145 CATTGCATCCCATCCCTTCC 58.665 55.000 0.00 0.00 0.00 3.46
643 652 0.677842 GCATTGCATCCCATCCCTTC 59.322 55.000 3.15 0.00 0.00 3.46
644 653 0.031917 TGCATTGCATCCCATCCCTT 60.032 50.000 7.38 0.00 31.71 3.95
645 654 0.031917 TTGCATTGCATCCCATCCCT 60.032 50.000 12.95 0.00 38.76 4.20
646 655 0.105408 GTTGCATTGCATCCCATCCC 59.895 55.000 12.95 0.00 38.76 3.85
647 656 0.249155 CGTTGCATTGCATCCCATCC 60.249 55.000 12.95 0.00 38.76 3.51
648 657 0.740149 TCGTTGCATTGCATCCCATC 59.260 50.000 12.95 0.00 38.76 3.51
649 658 0.742505 CTCGTTGCATTGCATCCCAT 59.257 50.000 12.95 0.00 38.76 4.00
654 663 0.608856 TCCCACTCGTTGCATTGCAT 60.609 50.000 12.95 0.00 38.76 3.96
676 685 1.536073 GCCCTGGCCCAGTCTTTTTC 61.536 60.000 10.47 0.00 34.56 2.29
749 758 0.937699 GCTCGCACGTGTCTTGTGTA 60.938 55.000 18.38 0.00 39.53 2.90
769 778 4.995487 GTCGTGGAGAAATAGGACAAGTTT 59.005 41.667 0.00 0.00 0.00 2.66
809 839 0.975040 CCTCCTCACTCCTCACAGGG 60.975 65.000 0.00 0.00 35.59 4.45
812 842 1.133167 TGTTCCTCCTCACTCCTCACA 60.133 52.381 0.00 0.00 0.00 3.58
832 862 4.228210 TCCCAAGCTATCTCCTGTTGAATT 59.772 41.667 0.00 0.00 0.00 2.17
893 923 4.048241 ACTTTATAGAGAGCTTCGGTGC 57.952 45.455 0.00 0.00 0.00 5.01
895 925 4.880696 ACGTACTTTATAGAGAGCTTCGGT 59.119 41.667 0.00 0.00 0.00 4.69
954 987 2.398588 ACCGAGGAGATGGATGCTTAA 58.601 47.619 0.00 0.00 0.00 1.85
1029 1064 2.304761 AGGAACAGGTTCGCCATCTTTA 59.695 45.455 6.12 0.00 40.37 1.85
1203 1238 1.768077 GGGATGGAGAGAGGTGGGG 60.768 68.421 0.00 0.00 0.00 4.96
1229 1301 2.487762 TGAAGACAAATTCATGGACGGC 59.512 45.455 0.00 0.00 34.31 5.68
1240 1312 5.335191 GGAGAACGCAAAGATGAAGACAAAT 60.335 40.000 0.00 0.00 0.00 2.32
1244 1316 3.067106 TGGAGAACGCAAAGATGAAGAC 58.933 45.455 0.00 0.00 0.00 3.01
1258 1330 1.398390 CGTGGCTTTGCTATGGAGAAC 59.602 52.381 0.00 0.00 0.00 3.01
1270 1342 1.975660 TGCTTTTCTACCGTGGCTTT 58.024 45.000 0.00 0.00 0.00 3.51
1395 1487 1.300963 GGAAGCTCAGCATGGGTCA 59.699 57.895 0.00 0.00 40.30 4.02
1444 1536 6.241645 AGATTCCAACAGCTAGCTAAAAAGT 58.758 36.000 18.86 7.97 0.00 2.66
1657 1766 4.077184 TAGCGCACGTTGGGGAGG 62.077 66.667 11.47 0.00 0.00 4.30
1699 1808 2.892425 GCGTGGATGCCTTCGAGG 60.892 66.667 0.00 0.00 38.80 4.63
1873 1982 2.504244 CAGAAGACGGCGTCGACC 60.504 66.667 31.59 23.53 37.67 4.79
2121 2230 2.261671 CGAAGTCCTGGACCGTGG 59.738 66.667 22.81 9.22 32.18 4.94
2122 2231 2.432628 GCGAAGTCCTGGACCGTG 60.433 66.667 22.81 13.40 32.18 4.94
2125 2234 3.379445 TCGGCGAAGTCCTGGACC 61.379 66.667 22.81 8.06 32.18 4.46
2228 2337 2.484558 TGCATCATGCTGCATTCGT 58.515 47.368 19.77 0.00 46.76 3.85
2235 2344 1.141019 GGCCACTTGCATCATGCTG 59.859 57.895 11.84 6.43 45.31 4.41
2236 2345 0.613853 AAGGCCACTTGCATCATGCT 60.614 50.000 11.84 0.00 45.31 3.79
2262 2379 0.674895 GCAGACATGAAAGCGTCCCT 60.675 55.000 0.00 0.00 32.33 4.20
2400 2518 5.125257 GGAATAGGAACGGGATAGTAGTAGC 59.875 48.000 0.00 0.00 0.00 3.58
2408 2526 5.657446 TGGAATAGGAATAGGAACGGGATA 58.343 41.667 0.00 0.00 0.00 2.59
2414 2532 7.520614 CGCTGAATTTGGAATAGGAATAGGAAC 60.521 40.741 0.00 0.00 0.00 3.62
2415 2533 6.486657 CGCTGAATTTGGAATAGGAATAGGAA 59.513 38.462 0.00 0.00 0.00 3.36
2452 2570 9.845214 GGGATGGATACTAGGAATATATACCAT 57.155 37.037 0.00 0.00 37.16 3.55
2453 2571 8.807630 TGGGATGGATACTAGGAATATATACCA 58.192 37.037 0.00 0.00 37.61 3.25
2454 2572 9.845214 ATGGGATGGATACTAGGAATATATACC 57.155 37.037 0.00 0.00 37.61 2.73
2459 2577 9.356649 AGAAAATGGGATGGATACTAGGAATAT 57.643 33.333 0.00 0.00 37.61 1.28
2493 2613 7.833285 AGGTAACATCCACAACTTACAATTT 57.167 32.000 0.00 0.00 41.41 1.82
2542 2662 4.250116 TCAGCAACACCGCAAAAATAAT 57.750 36.364 0.00 0.00 0.00 1.28
2562 2682 4.815269 ACTAACACAGCTGACTCAGATTC 58.185 43.478 23.35 0.00 32.44 2.52
2565 2685 2.226674 CGACTAACACAGCTGACTCAGA 59.773 50.000 23.35 0.00 32.44 3.27
2573 2693 2.076863 GGCAAATCGACTAACACAGCT 58.923 47.619 0.00 0.00 0.00 4.24
2575 2695 1.393539 CCGGCAAATCGACTAACACAG 59.606 52.381 0.00 0.00 0.00 3.66
2586 2706 0.951558 AATCATACGGCCGGCAAATC 59.048 50.000 31.76 9.91 0.00 2.17
2618 2792 1.931172 GTATACAGCCAACGCACGAAT 59.069 47.619 0.00 0.00 37.52 3.34
2633 2807 1.636988 ACGCAGCCAAAGACGTATAC 58.363 50.000 0.00 0.00 36.91 1.47
2635 2809 1.519408 AAACGCAGCCAAAGACGTAT 58.481 45.000 0.00 0.00 37.87 3.06
2637 2811 0.454196 AAAAACGCAGCCAAAGACGT 59.546 45.000 0.00 0.00 41.16 4.34
2638 2812 0.845768 CAAAAACGCAGCCAAAGACG 59.154 50.000 0.00 0.00 0.00 4.18
2639 2813 1.921243 ACAAAAACGCAGCCAAAGAC 58.079 45.000 0.00 0.00 0.00 3.01
2641 2815 3.738286 AAAACAAAAACGCAGCCAAAG 57.262 38.095 0.00 0.00 0.00 2.77
2666 2840 3.243501 TGCAGCCAAGATTGTCTCAAAAC 60.244 43.478 0.00 0.00 0.00 2.43
2667 2841 2.957680 TGCAGCCAAGATTGTCTCAAAA 59.042 40.909 0.00 0.00 0.00 2.44
2675 2849 6.046593 ACATTCAAATATGCAGCCAAGATTG 58.953 36.000 0.00 0.00 0.00 2.67
2686 2860 1.334960 CCGCCCGACATTCAAATATGC 60.335 52.381 0.00 0.00 0.00 3.14
2695 2869 4.652131 TGTTGCCCGCCCGACATT 62.652 61.111 0.00 0.00 0.00 2.71
2697 2871 4.877619 TTTGTTGCCCGCCCGACA 62.878 61.111 0.00 0.00 0.00 4.35
2698 2872 3.551887 CTTTTGTTGCCCGCCCGAC 62.552 63.158 0.00 0.00 0.00 4.79
2699 2873 3.291383 CTTTTGTTGCCCGCCCGA 61.291 61.111 0.00 0.00 0.00 5.14
2700 2874 3.291383 TCTTTTGTTGCCCGCCCG 61.291 61.111 0.00 0.00 0.00 6.13
2701 2875 2.338620 GTCTTTTGTTGCCCGCCC 59.661 61.111 0.00 0.00 0.00 6.13
2704 2878 1.164041 AGTCCGTCTTTTGTTGCCCG 61.164 55.000 0.00 0.00 0.00 6.13
2705 2879 1.029681 AAGTCCGTCTTTTGTTGCCC 58.970 50.000 0.00 0.00 31.57 5.36
2707 2881 3.105937 GTGAAAGTCCGTCTTTTGTTGC 58.894 45.455 4.73 0.00 45.15 4.17
2708 2882 3.350912 CGTGAAAGTCCGTCTTTTGTTG 58.649 45.455 4.73 0.00 45.15 3.33
2709 2883 2.353579 CCGTGAAAGTCCGTCTTTTGTT 59.646 45.455 4.73 0.00 45.15 2.83
2710 2884 1.937899 CCGTGAAAGTCCGTCTTTTGT 59.062 47.619 4.73 0.00 45.15 2.83
2711 2885 2.033151 GTCCGTGAAAGTCCGTCTTTTG 60.033 50.000 4.73 0.36 45.15 2.44
2712 2886 2.207590 GTCCGTGAAAGTCCGTCTTTT 58.792 47.619 4.73 0.00 45.15 2.27
2714 2888 0.748450 TGTCCGTGAAAGTCCGTCTT 59.252 50.000 0.00 0.00 38.10 3.01
2715 2889 0.031721 GTGTCCGTGAAAGTCCGTCT 59.968 55.000 0.00 0.00 0.00 4.18
2716 2890 0.031721 AGTGTCCGTGAAAGTCCGTC 59.968 55.000 0.00 0.00 0.00 4.79
2717 2891 0.462789 AAGTGTCCGTGAAAGTCCGT 59.537 50.000 0.00 0.00 0.00 4.69
2718 2892 2.427232 TAAGTGTCCGTGAAAGTCCG 57.573 50.000 0.00 0.00 0.00 4.79
2719 2893 6.790285 TTAATTAAGTGTCCGTGAAAGTCC 57.210 37.500 0.00 0.00 0.00 3.85
2720 2894 7.041576 AGGTTTAATTAAGTGTCCGTGAAAGTC 60.042 37.037 0.00 0.00 0.00 3.01
2721 2895 6.769341 AGGTTTAATTAAGTGTCCGTGAAAGT 59.231 34.615 0.00 0.00 0.00 2.66
2722 2896 7.041644 TGAGGTTTAATTAAGTGTCCGTGAAAG 60.042 37.037 0.00 0.00 0.00 2.62
2723 2897 6.766944 TGAGGTTTAATTAAGTGTCCGTGAAA 59.233 34.615 0.00 0.00 0.00 2.69
2727 2901 4.694037 GCTGAGGTTTAATTAAGTGTCCGT 59.306 41.667 0.00 0.00 0.00 4.69
2728 2902 4.094442 GGCTGAGGTTTAATTAAGTGTCCG 59.906 45.833 0.00 0.00 0.00 4.79
2729 2903 5.007682 TGGCTGAGGTTTAATTAAGTGTCC 58.992 41.667 0.00 1.37 0.00 4.02
2730 2904 6.569179 TTGGCTGAGGTTTAATTAAGTGTC 57.431 37.500 0.00 0.00 0.00 3.67
2736 2910 9.487442 AGGATTTTATTGGCTGAGGTTTAATTA 57.513 29.630 0.00 0.00 0.00 1.40
2737 2911 8.379428 AGGATTTTATTGGCTGAGGTTTAATT 57.621 30.769 0.00 0.00 0.00 1.40
2741 2915 6.154534 GGTTAGGATTTTATTGGCTGAGGTTT 59.845 38.462 0.00 0.00 0.00 3.27
2742 2916 5.656859 GGTTAGGATTTTATTGGCTGAGGTT 59.343 40.000 0.00 0.00 0.00 3.50
2743 2917 5.201243 GGTTAGGATTTTATTGGCTGAGGT 58.799 41.667 0.00 0.00 0.00 3.85
2745 2919 5.067805 GGTGGTTAGGATTTTATTGGCTGAG 59.932 44.000 0.00 0.00 0.00 3.35
2746 2920 4.953579 GGTGGTTAGGATTTTATTGGCTGA 59.046 41.667 0.00 0.00 0.00 4.26
2747 2921 4.099419 GGGTGGTTAGGATTTTATTGGCTG 59.901 45.833 0.00 0.00 0.00 4.85
2748 2922 4.016572 AGGGTGGTTAGGATTTTATTGGCT 60.017 41.667 0.00 0.00 0.00 4.75
2749 2923 4.099419 CAGGGTGGTTAGGATTTTATTGGC 59.901 45.833 0.00 0.00 0.00 4.52
2750 2924 5.269189 ACAGGGTGGTTAGGATTTTATTGG 58.731 41.667 0.00 0.00 0.00 3.16
2751 2925 7.948034 TTACAGGGTGGTTAGGATTTTATTG 57.052 36.000 0.00 0.00 0.00 1.90
2752 2926 9.197306 GATTTACAGGGTGGTTAGGATTTTATT 57.803 33.333 0.00 0.00 0.00 1.40
2753 2927 7.783119 GGATTTACAGGGTGGTTAGGATTTTAT 59.217 37.037 0.00 0.00 0.00 1.40
2754 2928 7.120716 GGATTTACAGGGTGGTTAGGATTTTA 58.879 38.462 0.00 0.00 0.00 1.52
2755 2929 5.955959 GGATTTACAGGGTGGTTAGGATTTT 59.044 40.000 0.00 0.00 0.00 1.82
2757 2931 4.079385 GGGATTTACAGGGTGGTTAGGATT 60.079 45.833 0.00 0.00 0.00 3.01
2758 2932 3.462205 GGGATTTACAGGGTGGTTAGGAT 59.538 47.826 0.00 0.00 0.00 3.24
2759 2933 2.848071 GGGATTTACAGGGTGGTTAGGA 59.152 50.000 0.00 0.00 0.00 2.94
2760 2934 2.578940 TGGGATTTACAGGGTGGTTAGG 59.421 50.000 0.00 0.00 0.00 2.69
2762 2936 4.957606 ATTGGGATTTACAGGGTGGTTA 57.042 40.909 0.00 0.00 0.00 2.85
2765 2939 4.404394 GGTTTATTGGGATTTACAGGGTGG 59.596 45.833 0.00 0.00 0.00 4.61
2766 2940 4.404394 GGGTTTATTGGGATTTACAGGGTG 59.596 45.833 0.00 0.00 0.00 4.61
2768 2942 3.964688 GGGGTTTATTGGGATTTACAGGG 59.035 47.826 0.00 0.00 0.00 4.45
2771 2945 4.976870 AGGGGGTTTATTGGGATTTACA 57.023 40.909 0.00 0.00 0.00 2.41
2774 2948 5.215845 CACATAGGGGGTTTATTGGGATTT 58.784 41.667 0.00 0.00 0.00 2.17
2775 2949 4.234223 ACACATAGGGGGTTTATTGGGATT 59.766 41.667 0.00 0.00 0.00 3.01
2776 2950 3.797269 ACACATAGGGGGTTTATTGGGAT 59.203 43.478 0.00 0.00 0.00 3.85
2778 2952 3.204382 AGACACATAGGGGGTTTATTGGG 59.796 47.826 0.00 0.00 0.00 4.12
2779 2953 4.519906 AGACACATAGGGGGTTTATTGG 57.480 45.455 0.00 0.00 0.00 3.16
2783 2957 3.726790 TGCTAGACACATAGGGGGTTTA 58.273 45.455 0.00 0.00 0.00 2.01
2784 2958 2.557869 TGCTAGACACATAGGGGGTTT 58.442 47.619 0.00 0.00 0.00 3.27
2786 2960 2.496679 ATGCTAGACACATAGGGGGT 57.503 50.000 0.00 0.00 0.00 4.95
2787 2961 3.904339 AGTAATGCTAGACACATAGGGGG 59.096 47.826 0.00 0.00 0.00 5.40
2788 2962 4.321304 CGAGTAATGCTAGACACATAGGGG 60.321 50.000 0.00 0.00 0.00 4.79
2789 2963 4.278669 ACGAGTAATGCTAGACACATAGGG 59.721 45.833 0.00 0.00 0.00 3.53
2790 2964 5.440234 ACGAGTAATGCTAGACACATAGG 57.560 43.478 0.00 0.00 0.00 2.57
2791 2965 6.427242 TCCTACGAGTAATGCTAGACACATAG 59.573 42.308 0.00 0.00 0.00 2.23
2793 2967 5.131067 TCCTACGAGTAATGCTAGACACAT 58.869 41.667 0.00 0.00 0.00 3.21
2822 3576 5.762218 GCCTATAACTGATGCAAAGAGACAT 59.238 40.000 6.76 0.00 0.00 3.06
2828 3582 4.637534 ACACAGCCTATAACTGATGCAAAG 59.362 41.667 8.95 0.00 38.55 2.77
2834 3588 5.661312 TCCTTACACACAGCCTATAACTGAT 59.339 40.000 8.95 0.00 38.55 2.90
2843 3597 0.756903 ACGTTCCTTACACACAGCCT 59.243 50.000 0.00 0.00 0.00 4.58
2844 3598 2.443887 TACGTTCCTTACACACAGCC 57.556 50.000 0.00 0.00 0.00 4.85
2846 3600 5.978934 AGTTTTACGTTCCTTACACACAG 57.021 39.130 0.00 0.00 0.00 3.66
2855 3609 3.196469 GCCTAGGGTAGTTTTACGTTCCT 59.804 47.826 11.72 0.00 0.00 3.36
2861 3615 5.180367 CTAGTCGCCTAGGGTAGTTTTAC 57.820 47.826 11.72 0.00 37.59 2.01
2872 3626 3.952967 AGTAAGAAACCCTAGTCGCCTAG 59.047 47.826 0.00 0.00 40.42 3.02
2877 3631 5.415077 TCTTGAGAGTAAGAAACCCTAGTCG 59.585 44.000 0.00 0.00 33.96 4.18
2884 3638 5.731957 AGGAGTCTTGAGAGTAAGAAACC 57.268 43.478 0.00 0.00 38.33 3.27
2898 3652 0.319641 GAACGGCGACAAGGAGTCTT 60.320 55.000 16.62 0.00 45.32 3.01
2899 3653 1.289380 GAACGGCGACAAGGAGTCT 59.711 57.895 16.62 0.00 45.32 3.24
3266 4020 5.578157 AACCCTACCTAAGACAACAATGT 57.422 39.130 0.00 0.00 44.25 2.71
3267 4021 5.183140 CCAAACCCTACCTAAGACAACAATG 59.817 44.000 0.00 0.00 0.00 2.82
3268 4022 5.073965 TCCAAACCCTACCTAAGACAACAAT 59.926 40.000 0.00 0.00 0.00 2.71
3269 4023 4.412858 TCCAAACCCTACCTAAGACAACAA 59.587 41.667 0.00 0.00 0.00 2.83
3270 4024 3.975312 TCCAAACCCTACCTAAGACAACA 59.025 43.478 0.00 0.00 0.00 3.33
3271 4025 4.565028 CCTCCAAACCCTACCTAAGACAAC 60.565 50.000 0.00 0.00 0.00 3.32
3272 4026 3.585732 CCTCCAAACCCTACCTAAGACAA 59.414 47.826 0.00 0.00 0.00 3.18
3273 4027 3.178865 CCTCCAAACCCTACCTAAGACA 58.821 50.000 0.00 0.00 0.00 3.41
3274 4028 2.504585 CCCTCCAAACCCTACCTAAGAC 59.495 54.545 0.00 0.00 0.00 3.01
3275 4029 2.114871 ACCCTCCAAACCCTACCTAAGA 59.885 50.000 0.00 0.00 0.00 2.10
3276 4030 2.558974 ACCCTCCAAACCCTACCTAAG 58.441 52.381 0.00 0.00 0.00 2.18
3277 4031 2.747083 ACCCTCCAAACCCTACCTAA 57.253 50.000 0.00 0.00 0.00 2.69
3278 4032 2.747083 AACCCTCCAAACCCTACCTA 57.253 50.000 0.00 0.00 0.00 3.08
3279 4033 2.114871 TCTAACCCTCCAAACCCTACCT 59.885 50.000 0.00 0.00 0.00 3.08
3280 4034 2.554563 TCTAACCCTCCAAACCCTACC 58.445 52.381 0.00 0.00 0.00 3.18
3281 4035 3.118000 CCATCTAACCCTCCAAACCCTAC 60.118 52.174 0.00 0.00 0.00 3.18
3282 4036 3.120108 CCATCTAACCCTCCAAACCCTA 58.880 50.000 0.00 0.00 0.00 3.53
3283 4037 1.923148 CCATCTAACCCTCCAAACCCT 59.077 52.381 0.00 0.00 0.00 4.34
3284 4038 1.685180 GCCATCTAACCCTCCAAACCC 60.685 57.143 0.00 0.00 0.00 4.11
3285 4039 1.763968 GCCATCTAACCCTCCAAACC 58.236 55.000 0.00 0.00 0.00 3.27
3286 4040 1.379527 CGCCATCTAACCCTCCAAAC 58.620 55.000 0.00 0.00 0.00 2.93
3287 4041 0.254747 CCGCCATCTAACCCTCCAAA 59.745 55.000 0.00 0.00 0.00 3.28
3288 4042 1.632018 CCCGCCATCTAACCCTCCAA 61.632 60.000 0.00 0.00 0.00 3.53
3289 4043 2.070039 CCCGCCATCTAACCCTCCA 61.070 63.158 0.00 0.00 0.00 3.86
3290 4044 1.759459 CTCCCGCCATCTAACCCTCC 61.759 65.000 0.00 0.00 0.00 4.30
3291 4045 1.749033 CTCCCGCCATCTAACCCTC 59.251 63.158 0.00 0.00 0.00 4.30
3292 4046 1.766461 CCTCCCGCCATCTAACCCT 60.766 63.158 0.00 0.00 0.00 4.34
3293 4047 2.829592 CCTCCCGCCATCTAACCC 59.170 66.667 0.00 0.00 0.00 4.11
3294 4048 2.111251 GCCTCCCGCCATCTAACC 59.889 66.667 0.00 0.00 0.00 2.85
3295 4049 2.280186 CGCCTCCCGCCATCTAAC 60.280 66.667 0.00 0.00 0.00 2.34
3296 4050 3.546543 CCGCCTCCCGCCATCTAA 61.547 66.667 0.00 0.00 35.03 2.10
3310 4064 2.178890 CAGATGAAGAGGCAGCCGC 61.179 63.158 7.17 7.17 37.44 6.53
3311 4065 2.178890 GCAGATGAAGAGGCAGCCG 61.179 63.158 5.55 0.00 0.00 5.52
3313 4067 1.096386 CCAGCAGATGAAGAGGCAGC 61.096 60.000 0.00 0.00 0.00 5.25
3314 4068 0.540454 TCCAGCAGATGAAGAGGCAG 59.460 55.000 0.00 0.00 0.00 4.85
3315 4069 0.251354 GTCCAGCAGATGAAGAGGCA 59.749 55.000 0.00 0.00 0.00 4.75
3352 4106 0.548510 ATCCTGCCTTTACTCCTGGC 59.451 55.000 0.00 0.00 46.26 4.85
3353 4107 1.133976 CCATCCTGCCTTTACTCCTGG 60.134 57.143 0.00 0.00 0.00 4.45
3357 4111 1.065126 ACTGCCATCCTGCCTTTACTC 60.065 52.381 0.00 0.00 0.00 2.59
3360 4114 1.354031 TCAACTGCCATCCTGCCTTTA 59.646 47.619 0.00 0.00 0.00 1.85
3366 4120 3.640498 TCTCTAGATCAACTGCCATCCTG 59.360 47.826 0.00 0.00 0.00 3.86
3371 4125 3.432749 GGCATTCTCTAGATCAACTGCCA 60.433 47.826 18.53 0.00 45.60 4.92
3372 4126 3.137533 GGCATTCTCTAGATCAACTGCC 58.862 50.000 12.47 12.47 40.89 4.85
3374 4128 5.608449 TCATGGCATTCTCTAGATCAACTG 58.392 41.667 0.00 0.00 0.00 3.16
3375 4129 5.883685 TCATGGCATTCTCTAGATCAACT 57.116 39.130 0.00 0.00 0.00 3.16
3399 4153 4.789012 TCCAATTCCAAGCTTCATGTTC 57.211 40.909 0.00 0.00 0.00 3.18
3417 4171 3.729108 ACCAGATTGGAGATCTCTTCCA 58.271 45.455 21.81 10.28 40.96 3.53
3421 4175 7.443302 TGATTTTACCAGATTGGAGATCTCT 57.557 36.000 21.81 2.43 40.96 3.10
3422 4176 6.204495 GCTGATTTTACCAGATTGGAGATCTC 59.796 42.308 14.75 14.75 40.96 2.75
3423 4177 6.060788 GCTGATTTTACCAGATTGGAGATCT 58.939 40.000 0.00 0.00 40.96 2.75
3424 4178 5.049818 CGCTGATTTTACCAGATTGGAGATC 60.050 44.000 1.40 0.00 40.96 2.75
3425 4179 4.818546 CGCTGATTTTACCAGATTGGAGAT 59.181 41.667 1.40 0.00 40.96 2.75
3426 4180 4.191544 CGCTGATTTTACCAGATTGGAGA 58.808 43.478 1.40 0.00 40.96 3.71
3427 4181 3.242870 GCGCTGATTTTACCAGATTGGAG 60.243 47.826 0.00 0.00 40.96 3.86
3428 4182 2.682856 GCGCTGATTTTACCAGATTGGA 59.317 45.455 0.00 0.00 40.96 3.53
3429 4183 2.539547 CGCGCTGATTTTACCAGATTGG 60.540 50.000 5.56 0.00 45.02 3.16
3430 4184 2.351418 TCGCGCTGATTTTACCAGATTG 59.649 45.455 5.56 0.00 33.65 2.67
3431 4185 2.627945 TCGCGCTGATTTTACCAGATT 58.372 42.857 5.56 0.00 33.65 2.40
3432 4186 2.309528 TCGCGCTGATTTTACCAGAT 57.690 45.000 5.56 0.00 33.65 2.90
3433 4187 1.933181 CATCGCGCTGATTTTACCAGA 59.067 47.619 3.33 0.00 34.13 3.86
3434 4188 1.933181 TCATCGCGCTGATTTTACCAG 59.067 47.619 8.85 0.00 34.13 4.00
3435 4189 2.017138 TCATCGCGCTGATTTTACCA 57.983 45.000 8.85 0.00 34.13 3.25
3436 4190 3.248602 AGATTCATCGCGCTGATTTTACC 59.751 43.478 14.07 0.00 34.13 2.85
3437 4191 4.458951 AGATTCATCGCGCTGATTTTAC 57.541 40.909 14.07 4.25 34.13 2.01
3438 4192 5.983118 TCTAAGATTCATCGCGCTGATTTTA 59.017 36.000 14.07 11.12 34.13 1.52
3439 4193 4.811024 TCTAAGATTCATCGCGCTGATTTT 59.189 37.500 14.07 10.61 34.13 1.82
3440 4194 4.371786 TCTAAGATTCATCGCGCTGATTT 58.628 39.130 14.07 10.93 34.13 2.17
3441 4195 3.982475 TCTAAGATTCATCGCGCTGATT 58.018 40.909 14.07 10.29 34.13 2.57
3442 4196 3.573598 CTCTAAGATTCATCGCGCTGAT 58.426 45.455 14.07 7.42 38.01 2.90
3443 4197 3.005341 CTCTAAGATTCATCGCGCTGA 57.995 47.619 8.85 8.85 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.