Multiple sequence alignment - TraesCS2D01G046700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G046700 chr2D 100.000 2263 0 0 337 2599 17090471 17088209 0.000000e+00 4180.0
1 TraesCS2D01G046700 chr2D 93.784 1995 82 13 638 2599 642152694 642150709 0.000000e+00 2959.0
2 TraesCS2D01G046700 chr2D 92.970 953 28 12 1668 2599 107870224 107871158 0.000000e+00 1352.0
3 TraesCS2D01G046700 chr2D 87.384 967 57 26 1668 2599 21227795 21228731 0.000000e+00 1050.0
4 TraesCS2D01G046700 chr2D 87.893 826 47 29 1798 2599 484895850 484895054 0.000000e+00 922.0
5 TraesCS2D01G046700 chr2D 100.000 42 0 0 1 42 17090807 17090766 7.710000e-11 78.7
6 TraesCS2D01G046700 chr7D 93.722 1991 72 24 640 2598 629949573 629951542 0.000000e+00 2935.0
7 TraesCS2D01G046700 chr7D 95.050 1111 26 7 1511 2599 592559025 592560128 0.000000e+00 1720.0
8 TraesCS2D01G046700 chr7D 93.333 150 10 0 491 640 519792662 519792811 3.370000e-54 222.0
9 TraesCS2D01G046700 chr3D 94.496 1399 57 12 640 2027 613613601 613614990 0.000000e+00 2139.0
10 TraesCS2D01G046700 chr3D 96.240 984 31 6 1187 2168 77349689 77348710 0.000000e+00 1607.0
11 TraesCS2D01G046700 chr3D 92.449 980 23 10 1668 2599 536923073 536924049 0.000000e+00 1352.0
12 TraesCS2D01G046700 chr3D 88.285 828 43 30 1798 2599 523581983 523581184 0.000000e+00 942.0
13 TraesCS2D01G046700 chr3D 86.553 818 51 24 1798 2599 4446057 4445283 0.000000e+00 846.0
14 TraesCS2D01G046700 chrUn 95.004 1181 46 9 800 1971 99298221 99299397 0.000000e+00 1842.0
15 TraesCS2D01G046700 chrUn 94.023 1054 48 8 637 1676 33192670 33193722 0.000000e+00 1583.0
16 TraesCS2D01G046700 chrUn 95.030 664 16 11 1940 2599 33202987 33203637 0.000000e+00 1027.0
17 TraesCS2D01G046700 chrUn 87.743 824 52 24 1798 2599 68577651 68576855 0.000000e+00 917.0
18 TraesCS2D01G046700 chr5D 96.191 1129 38 5 1046 2171 27831311 27830185 0.000000e+00 1842.0
19 TraesCS2D01G046700 chr5D 90.154 975 35 20 1668 2597 543866244 543867202 0.000000e+00 1212.0
20 TraesCS2D01G046700 chr2A 94.802 1135 34 6 1453 2564 559739600 559738468 0.000000e+00 1746.0
21 TraesCS2D01G046700 chr2A 90.461 304 29 0 337 640 516470524 516470221 4.030000e-108 401.0
22 TraesCS2D01G046700 chr3A 93.322 1183 66 8 641 1812 27492742 27493922 0.000000e+00 1735.0
23 TraesCS2D01G046700 chr1D 93.983 1047 52 6 640 1676 490432738 490433783 0.000000e+00 1574.0
24 TraesCS2D01G046700 chr6B 93.655 1056 51 9 636 1676 704787882 704786828 0.000000e+00 1565.0
25 TraesCS2D01G046700 chr2B 94.123 1038 43 8 640 1664 794747226 794746194 0.000000e+00 1563.0
26 TraesCS2D01G046700 chr2B 91.685 926 41 8 1695 2599 28871467 28870557 0.000000e+00 1251.0
27 TraesCS2D01G046700 chr2B 90.231 952 30 16 1695 2599 786019351 786018416 0.000000e+00 1184.0
28 TraesCS2D01G046700 chr4D 94.499 909 16 15 1695 2599 455274570 455273692 0.000000e+00 1371.0
29 TraesCS2D01G046700 chr7B 90.965 974 32 12 1668 2599 525929423 525930382 0.000000e+00 1260.0
30 TraesCS2D01G046700 chr5B 88.286 700 16 14 1940 2599 604919841 604920514 0.000000e+00 778.0
31 TraesCS2D01G046700 chr6D 93.421 304 20 0 337 640 161106789 161106486 3.940000e-123 451.0
32 TraesCS2D01G046700 chr6D 92.105 304 24 0 337 640 411220216 411219913 1.850000e-116 429.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G046700 chr2D 17088209 17090807 2598 True 2129.35 4180 100.000 1 2599 2 chr2D.!!$R3 2598
1 TraesCS2D01G046700 chr2D 642150709 642152694 1985 True 2959.00 2959 93.784 638 2599 1 chr2D.!!$R2 1961
2 TraesCS2D01G046700 chr2D 107870224 107871158 934 False 1352.00 1352 92.970 1668 2599 1 chr2D.!!$F2 931
3 TraesCS2D01G046700 chr2D 21227795 21228731 936 False 1050.00 1050 87.384 1668 2599 1 chr2D.!!$F1 931
4 TraesCS2D01G046700 chr2D 484895054 484895850 796 True 922.00 922 87.893 1798 2599 1 chr2D.!!$R1 801
5 TraesCS2D01G046700 chr7D 629949573 629951542 1969 False 2935.00 2935 93.722 640 2598 1 chr7D.!!$F3 1958
6 TraesCS2D01G046700 chr7D 592559025 592560128 1103 False 1720.00 1720 95.050 1511 2599 1 chr7D.!!$F2 1088
7 TraesCS2D01G046700 chr3D 613613601 613614990 1389 False 2139.00 2139 94.496 640 2027 1 chr3D.!!$F2 1387
8 TraesCS2D01G046700 chr3D 77348710 77349689 979 True 1607.00 1607 96.240 1187 2168 1 chr3D.!!$R2 981
9 TraesCS2D01G046700 chr3D 536923073 536924049 976 False 1352.00 1352 92.449 1668 2599 1 chr3D.!!$F1 931
10 TraesCS2D01G046700 chr3D 523581184 523581983 799 True 942.00 942 88.285 1798 2599 1 chr3D.!!$R3 801
11 TraesCS2D01G046700 chr3D 4445283 4446057 774 True 846.00 846 86.553 1798 2599 1 chr3D.!!$R1 801
12 TraesCS2D01G046700 chrUn 99298221 99299397 1176 False 1842.00 1842 95.004 800 1971 1 chrUn.!!$F3 1171
13 TraesCS2D01G046700 chrUn 33192670 33193722 1052 False 1583.00 1583 94.023 637 1676 1 chrUn.!!$F1 1039
14 TraesCS2D01G046700 chrUn 33202987 33203637 650 False 1027.00 1027 95.030 1940 2599 1 chrUn.!!$F2 659
15 TraesCS2D01G046700 chrUn 68576855 68577651 796 True 917.00 917 87.743 1798 2599 1 chrUn.!!$R1 801
16 TraesCS2D01G046700 chr5D 27830185 27831311 1126 True 1842.00 1842 96.191 1046 2171 1 chr5D.!!$R1 1125
17 TraesCS2D01G046700 chr5D 543866244 543867202 958 False 1212.00 1212 90.154 1668 2597 1 chr5D.!!$F1 929
18 TraesCS2D01G046700 chr2A 559738468 559739600 1132 True 1746.00 1746 94.802 1453 2564 1 chr2A.!!$R2 1111
19 TraesCS2D01G046700 chr3A 27492742 27493922 1180 False 1735.00 1735 93.322 641 1812 1 chr3A.!!$F1 1171
20 TraesCS2D01G046700 chr1D 490432738 490433783 1045 False 1574.00 1574 93.983 640 1676 1 chr1D.!!$F1 1036
21 TraesCS2D01G046700 chr6B 704786828 704787882 1054 True 1565.00 1565 93.655 636 1676 1 chr6B.!!$R1 1040
22 TraesCS2D01G046700 chr2B 794746194 794747226 1032 True 1563.00 1563 94.123 640 1664 1 chr2B.!!$R3 1024
23 TraesCS2D01G046700 chr2B 28870557 28871467 910 True 1251.00 1251 91.685 1695 2599 1 chr2B.!!$R1 904
24 TraesCS2D01G046700 chr2B 786018416 786019351 935 True 1184.00 1184 90.231 1695 2599 1 chr2B.!!$R2 904
25 TraesCS2D01G046700 chr4D 455273692 455274570 878 True 1371.00 1371 94.499 1695 2599 1 chr4D.!!$R1 904
26 TraesCS2D01G046700 chr7B 525929423 525930382 959 False 1260.00 1260 90.965 1668 2599 1 chr7B.!!$F1 931
27 TraesCS2D01G046700 chr5B 604919841 604920514 673 False 778.00 778 88.286 1940 2599 1 chr5B.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.030908 GGTCGGCCGTCTAGATTCTG 59.969 60.0 27.15 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1976 0.18135 GGGTGGGCTGGTCTCTATTG 59.819 60.0 0.0 0.0 0.0 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.821589 GCTTCTCCAGGCGGTCGG 62.822 72.222 0.00 0.00 0.00 4.79
20 21 4.821589 CTTCTCCAGGCGGTCGGC 62.822 72.222 8.91 8.91 42.51 5.54
32 33 2.416901 GGTCGGCCGTCTAGATTCT 58.583 57.895 27.15 0.00 0.00 2.40
33 34 0.030908 GGTCGGCCGTCTAGATTCTG 59.969 60.000 27.15 0.00 0.00 3.02
34 35 0.739561 GTCGGCCGTCTAGATTCTGT 59.260 55.000 27.15 0.00 0.00 3.41
35 36 1.134560 GTCGGCCGTCTAGATTCTGTT 59.865 52.381 27.15 0.00 0.00 3.16
36 37 1.822990 TCGGCCGTCTAGATTCTGTTT 59.177 47.619 27.15 0.00 0.00 2.83
37 38 2.232941 TCGGCCGTCTAGATTCTGTTTT 59.767 45.455 27.15 0.00 0.00 2.43
38 39 3.000727 CGGCCGTCTAGATTCTGTTTTT 58.999 45.455 19.50 0.00 0.00 1.94
39 40 3.181520 CGGCCGTCTAGATTCTGTTTTTG 60.182 47.826 19.50 0.00 0.00 2.44
40 41 4.000988 GGCCGTCTAGATTCTGTTTTTGA 58.999 43.478 0.00 0.00 0.00 2.69
41 42 4.093556 GGCCGTCTAGATTCTGTTTTTGAG 59.906 45.833 0.00 0.00 0.00 3.02
353 354 3.129502 CTGCAGGCACCATGACCG 61.130 66.667 5.57 0.00 0.00 4.79
354 355 3.610619 CTGCAGGCACCATGACCGA 62.611 63.158 5.57 0.00 0.00 4.69
355 356 2.821366 GCAGGCACCATGACCGAG 60.821 66.667 0.00 0.00 0.00 4.63
356 357 2.665000 CAGGCACCATGACCGAGT 59.335 61.111 0.00 0.00 0.00 4.18
357 358 1.448540 CAGGCACCATGACCGAGTC 60.449 63.158 0.00 0.00 0.00 3.36
358 359 1.913262 AGGCACCATGACCGAGTCA 60.913 57.895 8.81 8.81 46.90 3.41
359 360 1.003839 GGCACCATGACCGAGTCAA 60.004 57.895 10.17 0.00 45.96 3.18
360 361 0.392998 GGCACCATGACCGAGTCAAT 60.393 55.000 10.17 0.00 45.96 2.57
361 362 1.009829 GCACCATGACCGAGTCAATC 58.990 55.000 10.17 0.00 45.96 2.67
362 363 1.675714 GCACCATGACCGAGTCAATCA 60.676 52.381 10.17 0.00 45.96 2.57
363 364 2.910199 CACCATGACCGAGTCAATCAT 58.090 47.619 10.17 1.13 45.96 2.45
364 365 2.868583 CACCATGACCGAGTCAATCATC 59.131 50.000 10.17 0.00 45.96 2.92
365 366 2.158900 ACCATGACCGAGTCAATCATCC 60.159 50.000 10.17 0.00 45.96 3.51
366 367 2.487934 CATGACCGAGTCAATCATCCC 58.512 52.381 10.17 0.00 45.96 3.85
367 368 1.567357 TGACCGAGTCAATCATCCCA 58.433 50.000 4.51 0.00 39.78 4.37
368 369 1.905894 TGACCGAGTCAATCATCCCAA 59.094 47.619 4.51 0.00 39.78 4.12
369 370 2.093500 TGACCGAGTCAATCATCCCAAG 60.093 50.000 4.51 0.00 39.78 3.61
370 371 1.210478 ACCGAGTCAATCATCCCAAGG 59.790 52.381 0.00 0.00 0.00 3.61
371 372 1.486310 CCGAGTCAATCATCCCAAGGA 59.514 52.381 0.00 0.00 35.55 3.36
372 373 2.092968 CCGAGTCAATCATCCCAAGGAA 60.093 50.000 0.00 0.00 34.34 3.36
373 374 2.939103 CGAGTCAATCATCCCAAGGAAC 59.061 50.000 0.00 0.00 34.34 3.62
375 376 3.944015 GAGTCAATCATCCCAAGGAACTG 59.056 47.826 0.00 0.00 40.86 3.16
376 377 3.588842 AGTCAATCATCCCAAGGAACTGA 59.411 43.478 0.00 0.00 40.86 3.41
377 378 3.944015 GTCAATCATCCCAAGGAACTGAG 59.056 47.826 0.00 0.00 40.86 3.35
378 379 2.686915 CAATCATCCCAAGGAACTGAGC 59.313 50.000 0.00 0.00 40.86 4.26
379 380 1.661463 TCATCCCAAGGAACTGAGCT 58.339 50.000 0.00 0.00 40.86 4.09
380 381 1.988107 TCATCCCAAGGAACTGAGCTT 59.012 47.619 0.00 0.00 40.86 3.74
381 382 2.376518 TCATCCCAAGGAACTGAGCTTT 59.623 45.455 0.00 0.00 40.86 3.51
382 383 2.276732 TCCCAAGGAACTGAGCTTTG 57.723 50.000 0.00 0.00 40.86 2.77
383 384 1.494721 TCCCAAGGAACTGAGCTTTGT 59.505 47.619 0.00 0.00 40.86 2.83
384 385 2.708861 TCCCAAGGAACTGAGCTTTGTA 59.291 45.455 0.00 0.00 40.86 2.41
385 386 3.077359 CCCAAGGAACTGAGCTTTGTAG 58.923 50.000 0.00 0.00 40.86 2.74
386 387 3.077359 CCAAGGAACTGAGCTTTGTAGG 58.923 50.000 0.00 0.00 40.86 3.18
387 388 2.481289 AGGAACTGAGCTTTGTAGGC 57.519 50.000 0.00 0.00 37.18 3.93
388 389 1.079503 GGAACTGAGCTTTGTAGGCG 58.920 55.000 0.00 0.00 34.52 5.52
389 390 1.079503 GAACTGAGCTTTGTAGGCGG 58.920 55.000 0.00 0.00 34.52 6.13
390 391 0.685097 AACTGAGCTTTGTAGGCGGA 59.315 50.000 0.00 0.00 34.52 5.54
391 392 0.037232 ACTGAGCTTTGTAGGCGGAC 60.037 55.000 0.00 0.00 34.52 4.79
392 393 1.078759 CTGAGCTTTGTAGGCGGACG 61.079 60.000 0.00 0.00 34.52 4.79
393 394 2.434359 AGCTTTGTAGGCGGACGC 60.434 61.111 8.39 8.39 41.06 5.19
404 405 2.104331 CGGACGCCGCAGAGTATT 59.896 61.111 5.38 0.00 41.17 1.89
405 406 1.518572 CGGACGCCGCAGAGTATTT 60.519 57.895 5.38 0.00 41.17 1.40
406 407 1.082117 CGGACGCCGCAGAGTATTTT 61.082 55.000 5.38 0.00 41.17 1.82
407 408 0.651031 GGACGCCGCAGAGTATTTTC 59.349 55.000 0.00 0.00 0.00 2.29
408 409 0.651031 GACGCCGCAGAGTATTTTCC 59.349 55.000 0.00 0.00 0.00 3.13
409 410 1.082117 ACGCCGCAGAGTATTTTCCG 61.082 55.000 0.00 0.00 0.00 4.30
410 411 1.082117 CGCCGCAGAGTATTTTCCGT 61.082 55.000 0.00 0.00 0.00 4.69
411 412 1.084289 GCCGCAGAGTATTTTCCGTT 58.916 50.000 0.00 0.00 0.00 4.44
412 413 1.202031 GCCGCAGAGTATTTTCCGTTG 60.202 52.381 0.00 0.00 0.00 4.10
413 414 1.396996 CCGCAGAGTATTTTCCGTTGG 59.603 52.381 0.00 0.00 0.00 3.77
414 415 2.073816 CGCAGAGTATTTTCCGTTGGT 58.926 47.619 0.00 0.00 0.00 3.67
415 416 2.159707 CGCAGAGTATTTTCCGTTGGTG 60.160 50.000 0.00 0.00 0.00 4.17
416 417 2.161609 GCAGAGTATTTTCCGTTGGTGG 59.838 50.000 0.00 0.00 0.00 4.61
417 418 3.408634 CAGAGTATTTTCCGTTGGTGGT 58.591 45.455 0.00 0.00 0.00 4.16
418 419 3.188460 CAGAGTATTTTCCGTTGGTGGTG 59.812 47.826 0.00 0.00 0.00 4.17
419 420 3.071892 AGAGTATTTTCCGTTGGTGGTGA 59.928 43.478 0.00 0.00 0.00 4.02
420 421 3.816523 GAGTATTTTCCGTTGGTGGTGAA 59.183 43.478 0.00 0.00 0.00 3.18
421 422 3.566742 AGTATTTTCCGTTGGTGGTGAAC 59.433 43.478 0.00 0.00 0.00 3.18
422 423 2.131776 TTTTCCGTTGGTGGTGAACT 57.868 45.000 0.00 0.00 0.00 3.01
423 424 2.131776 TTTCCGTTGGTGGTGAACTT 57.868 45.000 0.00 0.00 0.00 2.66
424 425 1.670791 TTCCGTTGGTGGTGAACTTC 58.329 50.000 0.00 0.00 0.00 3.01
425 426 0.179040 TCCGTTGGTGGTGAACTTCC 60.179 55.000 0.00 0.00 0.00 3.46
426 427 0.464735 CCGTTGGTGGTGAACTTCCA 60.465 55.000 0.00 0.00 0.00 3.53
427 428 1.384525 CGTTGGTGGTGAACTTCCAA 58.615 50.000 0.00 0.00 36.68 3.53
428 429 1.746220 CGTTGGTGGTGAACTTCCAAA 59.254 47.619 9.93 0.00 40.82 3.28
429 430 2.478879 CGTTGGTGGTGAACTTCCAAAC 60.479 50.000 9.93 0.00 40.82 2.93
430 431 2.494073 GTTGGTGGTGAACTTCCAAACA 59.506 45.455 9.93 0.00 40.82 2.83
431 432 2.808919 TGGTGGTGAACTTCCAAACAA 58.191 42.857 0.00 0.00 36.68 2.83
432 433 3.370104 TGGTGGTGAACTTCCAAACAAT 58.630 40.909 0.00 0.00 36.68 2.71
433 434 3.131933 TGGTGGTGAACTTCCAAACAATG 59.868 43.478 0.00 0.00 36.68 2.82
434 435 3.132111 GGTGGTGAACTTCCAAACAATGT 59.868 43.478 0.00 0.00 36.68 2.71
435 436 4.359706 GTGGTGAACTTCCAAACAATGTC 58.640 43.478 0.00 0.00 36.68 3.06
436 437 3.066064 TGGTGAACTTCCAAACAATGTCG 59.934 43.478 0.00 0.00 31.50 4.35
437 438 3.066203 GGTGAACTTCCAAACAATGTCGT 59.934 43.478 0.00 0.00 0.00 4.34
438 439 4.279659 GTGAACTTCCAAACAATGTCGTC 58.720 43.478 0.00 0.00 0.00 4.20
439 440 3.001838 TGAACTTCCAAACAATGTCGTCG 59.998 43.478 0.00 0.00 0.00 5.12
440 441 1.871039 ACTTCCAAACAATGTCGTCGG 59.129 47.619 0.00 0.00 0.00 4.79
441 442 0.589223 TTCCAAACAATGTCGTCGGC 59.411 50.000 0.00 0.00 0.00 5.54
442 443 0.533085 TCCAAACAATGTCGTCGGCA 60.533 50.000 0.14 0.14 0.00 5.69
443 444 0.309302 CCAAACAATGTCGTCGGCAA 59.691 50.000 2.47 0.00 0.00 4.52
444 445 1.068610 CCAAACAATGTCGTCGGCAAT 60.069 47.619 2.47 0.00 0.00 3.56
445 446 1.978097 CAAACAATGTCGTCGGCAATG 59.022 47.619 13.17 13.17 0.00 2.82
446 447 0.109781 AACAATGTCGTCGGCAATGC 60.110 50.000 14.58 0.00 0.00 3.56
447 448 1.226379 CAATGTCGTCGGCAATGCC 60.226 57.895 15.52 15.52 46.75 4.40
457 458 3.329114 GGCAATGCCGTCTTAAAGC 57.671 52.632 9.14 0.00 39.62 3.51
458 459 0.811281 GGCAATGCCGTCTTAAAGCT 59.189 50.000 9.14 0.00 39.62 3.74
459 460 2.014128 GGCAATGCCGTCTTAAAGCTA 58.986 47.619 9.14 0.00 39.62 3.32
460 461 2.618709 GGCAATGCCGTCTTAAAGCTAT 59.381 45.455 9.14 0.00 39.62 2.97
461 462 3.813166 GGCAATGCCGTCTTAAAGCTATA 59.187 43.478 9.14 0.00 39.62 1.31
462 463 4.455877 GGCAATGCCGTCTTAAAGCTATAT 59.544 41.667 9.14 0.00 39.62 0.86
463 464 5.048713 GGCAATGCCGTCTTAAAGCTATATT 60.049 40.000 9.14 0.00 39.62 1.28
464 465 6.438763 GCAATGCCGTCTTAAAGCTATATTT 58.561 36.000 0.00 0.00 0.00 1.40
465 466 6.360681 GCAATGCCGTCTTAAAGCTATATTTG 59.639 38.462 0.00 0.00 0.00 2.32
466 467 7.417612 CAATGCCGTCTTAAAGCTATATTTGT 58.582 34.615 0.00 0.00 0.00 2.83
467 468 6.995511 TGCCGTCTTAAAGCTATATTTGTT 57.004 33.333 0.00 0.00 0.00 2.83
468 469 7.011828 TGCCGTCTTAAAGCTATATTTGTTC 57.988 36.000 0.00 0.00 0.00 3.18
469 470 6.037830 TGCCGTCTTAAAGCTATATTTGTTCC 59.962 38.462 0.00 0.00 0.00 3.62
470 471 6.037830 GCCGTCTTAAAGCTATATTTGTTCCA 59.962 38.462 0.00 0.00 0.00 3.53
471 472 7.630924 CCGTCTTAAAGCTATATTTGTTCCAG 58.369 38.462 0.00 0.00 0.00 3.86
472 473 7.254795 CCGTCTTAAAGCTATATTTGTTCCAGG 60.255 40.741 0.00 0.00 0.00 4.45
473 474 7.418408 GTCTTAAAGCTATATTTGTTCCAGGC 58.582 38.462 0.00 0.00 0.00 4.85
474 475 7.283354 GTCTTAAAGCTATATTTGTTCCAGGCT 59.717 37.037 0.00 0.00 0.00 4.58
475 476 8.491134 TCTTAAAGCTATATTTGTTCCAGGCTA 58.509 33.333 0.00 0.00 0.00 3.93
476 477 8.677148 TTAAAGCTATATTTGTTCCAGGCTAG 57.323 34.615 0.00 0.00 0.00 3.42
477 478 6.500589 AAGCTATATTTGTTCCAGGCTAGA 57.499 37.500 0.00 0.00 0.00 2.43
478 479 5.859495 AGCTATATTTGTTCCAGGCTAGAC 58.141 41.667 0.00 0.00 0.00 2.59
479 480 4.998033 GCTATATTTGTTCCAGGCTAGACC 59.002 45.833 0.00 0.00 39.61 3.85
480 481 5.454755 GCTATATTTGTTCCAGGCTAGACCA 60.455 44.000 0.00 0.00 43.14 4.02
481 482 5.653255 ATATTTGTTCCAGGCTAGACCAT 57.347 39.130 0.00 0.00 43.14 3.55
482 483 6.763715 ATATTTGTTCCAGGCTAGACCATA 57.236 37.500 0.00 0.00 43.14 2.74
483 484 4.487714 TTTGTTCCAGGCTAGACCATAG 57.512 45.455 0.00 0.00 43.14 2.23
484 485 3.398318 TGTTCCAGGCTAGACCATAGA 57.602 47.619 0.00 0.00 43.14 1.98
485 486 3.300388 TGTTCCAGGCTAGACCATAGAG 58.700 50.000 0.00 0.00 43.14 2.43
486 487 2.002505 TCCAGGCTAGACCATAGAGC 57.997 55.000 0.00 0.00 43.14 4.09
487 488 0.600557 CCAGGCTAGACCATAGAGCG 59.399 60.000 0.00 0.00 43.14 5.03
488 489 0.038709 CAGGCTAGACCATAGAGCGC 60.039 60.000 0.00 0.00 43.14 5.92
489 490 0.468214 AGGCTAGACCATAGAGCGCA 60.468 55.000 11.47 0.00 43.14 6.09
490 491 0.389391 GGCTAGACCATAGAGCGCAA 59.611 55.000 11.47 0.00 38.86 4.85
491 492 1.202533 GGCTAGACCATAGAGCGCAAA 60.203 52.381 11.47 0.00 38.86 3.68
492 493 2.550978 GCTAGACCATAGAGCGCAAAA 58.449 47.619 11.47 0.00 0.00 2.44
493 494 2.285488 GCTAGACCATAGAGCGCAAAAC 59.715 50.000 11.47 0.00 0.00 2.43
494 495 2.770164 AGACCATAGAGCGCAAAACT 57.230 45.000 11.47 5.90 0.00 2.66
495 496 3.887621 AGACCATAGAGCGCAAAACTA 57.112 42.857 11.47 8.11 0.00 2.24
496 497 3.522553 AGACCATAGAGCGCAAAACTAC 58.477 45.455 11.47 0.00 0.00 2.73
497 498 3.056107 AGACCATAGAGCGCAAAACTACA 60.056 43.478 11.47 0.00 0.00 2.74
498 499 3.000727 ACCATAGAGCGCAAAACTACAC 58.999 45.455 11.47 0.00 0.00 2.90
499 500 3.000041 CCATAGAGCGCAAAACTACACA 59.000 45.455 11.47 0.00 0.00 3.72
500 501 3.435327 CCATAGAGCGCAAAACTACACAA 59.565 43.478 11.47 0.00 0.00 3.33
501 502 4.094887 CCATAGAGCGCAAAACTACACAAT 59.905 41.667 11.47 0.00 0.00 2.71
502 503 3.542712 AGAGCGCAAAACTACACAATG 57.457 42.857 11.47 0.00 0.00 2.82
503 504 2.878406 AGAGCGCAAAACTACACAATGT 59.122 40.909 11.47 0.00 0.00 2.71
504 505 2.973224 GAGCGCAAAACTACACAATGTG 59.027 45.455 12.40 12.40 39.75 3.21
505 506 2.050691 GCGCAAAACTACACAATGTGG 58.949 47.619 18.37 3.18 37.94 4.17
506 507 2.542824 GCGCAAAACTACACAATGTGGT 60.543 45.455 18.37 3.86 44.15 4.16
513 514 4.339872 ACTACACAATGTGGTTAACCGA 57.660 40.909 19.65 9.29 39.06 4.69
514 515 4.312443 ACTACACAATGTGGTTAACCGAG 58.688 43.478 19.65 9.60 39.06 4.63
515 516 3.478857 ACACAATGTGGTTAACCGAGA 57.521 42.857 19.65 8.09 37.94 4.04
516 517 3.399330 ACACAATGTGGTTAACCGAGAG 58.601 45.455 19.65 10.60 37.94 3.20
517 518 2.159627 CACAATGTGGTTAACCGAGAGC 59.840 50.000 19.65 7.86 39.43 4.09
518 519 1.737793 CAATGTGGTTAACCGAGAGCC 59.262 52.381 19.65 4.10 39.43 4.70
519 520 0.252197 ATGTGGTTAACCGAGAGCCC 59.748 55.000 19.65 2.47 39.43 5.19
520 521 1.447314 GTGGTTAACCGAGAGCCCG 60.447 63.158 19.65 0.00 39.43 6.13
521 522 2.510918 GGTTAACCGAGAGCCCGC 60.511 66.667 9.34 0.00 0.00 6.13
522 523 2.577593 GTTAACCGAGAGCCCGCT 59.422 61.111 0.00 0.00 0.00 5.52
523 524 1.669999 GGTTAACCGAGAGCCCGCTA 61.670 60.000 9.34 0.00 0.00 4.26
524 525 0.248949 GTTAACCGAGAGCCCGCTAG 60.249 60.000 0.00 0.00 0.00 3.42
525 526 2.012902 TTAACCGAGAGCCCGCTAGC 62.013 60.000 4.06 4.06 0.00 3.42
528 529 3.610669 CGAGAGCCCGCTAGCCAT 61.611 66.667 9.66 0.00 0.00 4.40
529 530 2.030262 GAGAGCCCGCTAGCCATG 59.970 66.667 9.66 0.00 0.00 3.66
530 531 2.765807 AGAGCCCGCTAGCCATGT 60.766 61.111 9.66 0.00 0.00 3.21
531 532 2.190578 GAGCCCGCTAGCCATGTT 59.809 61.111 9.66 0.00 0.00 2.71
532 533 1.048724 AGAGCCCGCTAGCCATGTTA 61.049 55.000 9.66 0.00 0.00 2.41
533 534 0.179056 GAGCCCGCTAGCCATGTTAA 60.179 55.000 9.66 0.00 0.00 2.01
534 535 0.474184 AGCCCGCTAGCCATGTTAAT 59.526 50.000 9.66 0.00 0.00 1.40
535 536 0.593128 GCCCGCTAGCCATGTTAATG 59.407 55.000 9.66 0.00 0.00 1.90
536 537 1.967319 CCCGCTAGCCATGTTAATGT 58.033 50.000 9.66 0.00 31.27 2.71
537 538 2.297701 CCCGCTAGCCATGTTAATGTT 58.702 47.619 9.66 0.00 31.27 2.71
538 539 2.290641 CCCGCTAGCCATGTTAATGTTC 59.709 50.000 9.66 0.00 31.27 3.18
539 540 2.290641 CCGCTAGCCATGTTAATGTTCC 59.709 50.000 9.66 0.00 31.27 3.62
540 541 3.206150 CGCTAGCCATGTTAATGTTCCT 58.794 45.455 9.66 0.00 31.27 3.36
541 542 3.002656 CGCTAGCCATGTTAATGTTCCTG 59.997 47.826 9.66 0.00 31.27 3.86
542 543 4.199310 GCTAGCCATGTTAATGTTCCTGA 58.801 43.478 2.29 0.00 31.27 3.86
543 544 4.274459 GCTAGCCATGTTAATGTTCCTGAG 59.726 45.833 2.29 0.00 31.27 3.35
544 545 3.019564 AGCCATGTTAATGTTCCTGAGC 58.980 45.455 0.00 0.00 31.27 4.26
545 546 2.099756 GCCATGTTAATGTTCCTGAGCC 59.900 50.000 0.00 0.00 31.27 4.70
546 547 3.355378 CCATGTTAATGTTCCTGAGCCA 58.645 45.455 0.00 0.00 31.27 4.75
547 548 3.763360 CCATGTTAATGTTCCTGAGCCAA 59.237 43.478 0.00 0.00 31.27 4.52
548 549 4.220382 CCATGTTAATGTTCCTGAGCCAAA 59.780 41.667 0.00 0.00 31.27 3.28
549 550 5.404946 CATGTTAATGTTCCTGAGCCAAAG 58.595 41.667 0.00 0.00 0.00 2.77
550 551 3.826157 TGTTAATGTTCCTGAGCCAAAGG 59.174 43.478 0.00 0.00 36.02 3.11
551 552 2.978156 AATGTTCCTGAGCCAAAGGA 57.022 45.000 0.00 0.00 42.21 3.36
552 553 2.503895 ATGTTCCTGAGCCAAAGGAG 57.496 50.000 0.44 0.00 44.58 3.69
553 554 0.250901 TGTTCCTGAGCCAAAGGAGC 60.251 55.000 6.78 6.78 44.58 4.70
554 555 0.037447 GTTCCTGAGCCAAAGGAGCT 59.963 55.000 6.55 0.00 44.58 4.09
558 559 3.882025 GAGCCAAAGGAGCTCGTG 58.118 61.111 10.16 6.69 46.58 4.35
559 560 2.359230 AGCCAAAGGAGCTCGTGC 60.359 61.111 10.16 9.30 34.91 5.34
560 561 2.669569 GCCAAAGGAGCTCGTGCA 60.670 61.111 10.16 0.00 42.74 4.57
561 562 2.042831 GCCAAAGGAGCTCGTGCAT 61.043 57.895 10.16 0.00 42.74 3.96
562 563 1.986575 GCCAAAGGAGCTCGTGCATC 61.987 60.000 10.16 6.34 42.74 3.91
563 564 1.699656 CCAAAGGAGCTCGTGCATCG 61.700 60.000 10.16 0.00 42.74 3.84
564 565 2.103042 AAAGGAGCTCGTGCATCGC 61.103 57.895 10.16 0.00 42.74 4.58
565 566 4.862092 AGGAGCTCGTGCATCGCG 62.862 66.667 8.40 0.00 42.74 5.87
567 568 3.611792 GAGCTCGTGCATCGCGTC 61.612 66.667 12.58 0.00 42.74 5.19
570 571 4.498520 CTCGTGCATCGCGTCCCT 62.499 66.667 5.77 0.00 38.57 4.20
571 572 4.492160 TCGTGCATCGCGTCCCTC 62.492 66.667 5.77 0.00 38.57 4.30
572 573 4.794439 CGTGCATCGCGTCCCTCA 62.794 66.667 5.77 0.00 32.40 3.86
573 574 3.188786 GTGCATCGCGTCCCTCAC 61.189 66.667 5.77 5.06 0.00 3.51
574 575 3.690280 TGCATCGCGTCCCTCACA 61.690 61.111 5.77 0.00 0.00 3.58
575 576 2.887568 GCATCGCGTCCCTCACAG 60.888 66.667 5.77 0.00 0.00 3.66
576 577 2.573869 CATCGCGTCCCTCACAGT 59.426 61.111 5.77 0.00 0.00 3.55
577 578 1.807165 CATCGCGTCCCTCACAGTG 60.807 63.158 5.77 0.00 0.00 3.66
578 579 1.977009 ATCGCGTCCCTCACAGTGA 60.977 57.895 5.77 2.48 0.00 3.41
579 580 1.938657 ATCGCGTCCCTCACAGTGAG 61.939 60.000 22.14 22.14 43.91 3.51
588 589 1.517242 CTCACAGTGAGGTTCTTGCC 58.483 55.000 21.46 0.00 40.71 4.52
589 590 0.108585 TCACAGTGAGGTTCTTGCCC 59.891 55.000 0.00 0.00 0.00 5.36
590 591 0.109342 CACAGTGAGGTTCTTGCCCT 59.891 55.000 0.00 0.00 34.11 5.19
591 592 0.846693 ACAGTGAGGTTCTTGCCCTT 59.153 50.000 0.00 0.00 30.60 3.95
592 593 1.242076 CAGTGAGGTTCTTGCCCTTG 58.758 55.000 0.00 0.00 30.60 3.61
593 594 0.111253 AGTGAGGTTCTTGCCCTTGG 59.889 55.000 0.00 0.00 30.60 3.61
594 595 0.110486 GTGAGGTTCTTGCCCTTGGA 59.890 55.000 0.00 0.00 30.60 3.53
595 596 0.850100 TGAGGTTCTTGCCCTTGGAA 59.150 50.000 0.00 0.00 30.60 3.53
596 597 1.216678 TGAGGTTCTTGCCCTTGGAAA 59.783 47.619 0.00 0.00 30.60 3.13
597 598 2.158325 TGAGGTTCTTGCCCTTGGAAAT 60.158 45.455 0.00 0.00 30.60 2.17
598 599 2.899900 GAGGTTCTTGCCCTTGGAAATT 59.100 45.455 0.00 0.00 30.60 1.82
599 600 3.317406 AGGTTCTTGCCCTTGGAAATTT 58.683 40.909 0.00 0.00 0.00 1.82
600 601 3.324846 AGGTTCTTGCCCTTGGAAATTTC 59.675 43.478 9.83 9.83 0.00 2.17
601 602 3.317150 GTTCTTGCCCTTGGAAATTTCG 58.683 45.455 11.95 0.00 0.00 3.46
602 603 2.870175 TCTTGCCCTTGGAAATTTCGA 58.130 42.857 11.95 5.40 0.00 3.71
603 604 3.226777 TCTTGCCCTTGGAAATTTCGAA 58.773 40.909 13.99 13.99 0.00 3.71
604 605 3.255642 TCTTGCCCTTGGAAATTTCGAAG 59.744 43.478 27.04 27.04 41.08 3.79
605 606 2.870175 TGCCCTTGGAAATTTCGAAGA 58.130 42.857 32.40 17.43 43.15 2.87
606 607 3.430453 TGCCCTTGGAAATTTCGAAGAT 58.570 40.909 32.40 0.00 43.15 2.40
607 608 3.443681 TGCCCTTGGAAATTTCGAAGATC 59.556 43.478 32.40 24.68 43.15 2.75
608 609 3.443681 GCCCTTGGAAATTTCGAAGATCA 59.556 43.478 32.40 14.33 43.15 2.92
609 610 4.439289 GCCCTTGGAAATTTCGAAGATCAG 60.439 45.833 32.40 21.85 43.15 2.90
610 611 4.943705 CCCTTGGAAATTTCGAAGATCAGA 59.056 41.667 32.40 6.45 43.15 3.27
611 612 5.065731 CCCTTGGAAATTTCGAAGATCAGAG 59.934 44.000 32.40 19.56 43.15 3.35
612 613 5.065731 CCTTGGAAATTTCGAAGATCAGAGG 59.934 44.000 32.40 18.07 43.15 3.69
613 614 5.420725 TGGAAATTTCGAAGATCAGAGGA 57.579 39.130 11.95 0.00 35.04 3.71
614 615 5.423015 TGGAAATTTCGAAGATCAGAGGAG 58.577 41.667 11.95 0.00 35.04 3.69
615 616 4.272261 GGAAATTTCGAAGATCAGAGGAGC 59.728 45.833 11.95 0.00 35.04 4.70
616 617 2.568696 TTTCGAAGATCAGAGGAGCG 57.431 50.000 0.00 0.00 35.04 5.03
617 618 1.751437 TTCGAAGATCAGAGGAGCGA 58.249 50.000 0.00 0.00 35.04 4.93
618 619 1.974265 TCGAAGATCAGAGGAGCGAT 58.026 50.000 0.00 0.00 33.76 4.58
619 620 1.606189 TCGAAGATCAGAGGAGCGATG 59.394 52.381 0.00 0.00 33.76 3.84
620 621 1.336440 CGAAGATCAGAGGAGCGATGT 59.664 52.381 0.00 0.00 33.76 3.06
621 622 2.604373 CGAAGATCAGAGGAGCGATGTC 60.604 54.545 0.00 0.00 33.76 3.06
622 623 1.327303 AGATCAGAGGAGCGATGTCC 58.673 55.000 0.00 0.00 33.76 4.02
623 624 0.316841 GATCAGAGGAGCGATGTCCC 59.683 60.000 0.00 0.00 37.31 4.46
624 625 0.105760 ATCAGAGGAGCGATGTCCCT 60.106 55.000 0.00 0.00 37.31 4.20
625 626 0.551396 TCAGAGGAGCGATGTCCCTA 59.449 55.000 0.00 0.00 37.31 3.53
626 627 0.958091 CAGAGGAGCGATGTCCCTAG 59.042 60.000 0.00 0.00 37.31 3.02
627 628 0.178975 AGAGGAGCGATGTCCCTAGG 60.179 60.000 0.06 0.06 37.31 3.02
628 629 1.811645 GAGGAGCGATGTCCCTAGGC 61.812 65.000 2.05 0.00 37.31 3.93
629 630 1.834822 GGAGCGATGTCCCTAGGCT 60.835 63.158 2.05 0.00 36.51 4.58
630 631 1.403687 GGAGCGATGTCCCTAGGCTT 61.404 60.000 2.05 0.00 33.40 4.35
631 632 0.249657 GAGCGATGTCCCTAGGCTTG 60.250 60.000 2.05 0.00 33.40 4.01
632 633 1.227674 GCGATGTCCCTAGGCTTGG 60.228 63.158 8.11 8.11 0.00 3.61
633 634 1.447643 CGATGTCCCTAGGCTTGGG 59.552 63.158 25.93 25.93 45.90 4.12
634 635 1.149401 GATGTCCCTAGGCTTGGGC 59.851 63.158 26.87 21.29 44.23 5.36
688 689 2.655090 TGTGAATTGGAAGGAGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
694 695 5.048083 GTGAATTGGAAGGAGTGCAATGTAA 60.048 40.000 0.00 0.00 46.61 2.41
713 714 5.948588 TGTAATTCGAATGAATGGTTGTGG 58.051 37.500 12.25 0.00 44.02 4.17
717 718 1.402720 CGAATGAATGGTTGTGGTGCC 60.403 52.381 0.00 0.00 0.00 5.01
863 864 2.025321 GGGACCCACAACTTATCCACAT 60.025 50.000 5.33 0.00 0.00 3.21
941 951 1.755783 CCCTCCATTGCTTGCCCTC 60.756 63.158 0.00 0.00 0.00 4.30
968 983 2.541466 TCCCACCTTCTTCTTCCTCTC 58.459 52.381 0.00 0.00 0.00 3.20
1069 1084 0.534877 ACTGCCGTTGACAAGATGCA 60.535 50.000 0.00 0.00 0.00 3.96
1205 1220 5.233083 AGATCTGTGTTCTTGACCAATCA 57.767 39.130 0.00 0.00 0.00 2.57
1359 1376 3.307242 GTGGCTCGATGACTATGTTGAAC 59.693 47.826 0.00 0.00 0.00 3.18
1447 1464 2.645192 CCCCCAATTTGGCGGACAC 61.645 63.158 13.05 0.00 37.68 3.67
1450 1467 1.178534 CCCAATTTGGCGGACACAGT 61.179 55.000 10.10 0.00 35.79 3.55
1515 1532 4.344968 AGAAAATGGGCAAGCAACTAAAGT 59.655 37.500 0.00 0.00 0.00 2.66
1567 1585 8.654485 AATATGATGGCTGGAGCATTTTATTA 57.346 30.769 0.20 0.00 44.36 0.98
1930 1974 3.016736 CCGTGAGAAAATAACCATGCCT 58.983 45.455 0.00 0.00 0.00 4.75
1931 1976 3.065371 CCGTGAGAAAATAACCATGCCTC 59.935 47.826 0.00 0.00 0.00 4.70
2239 2419 3.847671 TTGAAGATGGTGTGTGTGGTA 57.152 42.857 0.00 0.00 0.00 3.25
2400 2604 2.666272 TTGCAACCCATAGTTCCACA 57.334 45.000 0.00 0.00 36.18 4.17
2576 2846 3.165160 AACAACGCCACCTCGCTCT 62.165 57.895 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.821589 GCCGACCGCCTGGAGAAG 62.822 72.222 0.00 0.00 39.21 2.85
14 15 0.030908 CAGAATCTAGACGGCCGACC 59.969 60.000 35.90 22.69 0.00 4.79
15 16 0.739561 ACAGAATCTAGACGGCCGAC 59.260 55.000 35.90 27.70 0.00 4.79
16 17 1.471119 AACAGAATCTAGACGGCCGA 58.529 50.000 35.90 9.64 0.00 5.54
17 18 2.295253 AAACAGAATCTAGACGGCCG 57.705 50.000 26.86 26.86 0.00 6.13
18 19 4.000988 TCAAAAACAGAATCTAGACGGCC 58.999 43.478 0.00 0.00 0.00 6.13
19 20 5.209944 CTCAAAAACAGAATCTAGACGGC 57.790 43.478 0.00 0.00 0.00 5.68
336 337 3.129502 CGGTCATGGTGCCTGCAG 61.130 66.667 6.78 6.78 0.00 4.41
337 338 3.610619 CTCGGTCATGGTGCCTGCA 62.611 63.158 0.00 0.00 0.00 4.41
338 339 2.821366 CTCGGTCATGGTGCCTGC 60.821 66.667 0.00 0.00 0.00 4.85
339 340 1.448540 GACTCGGTCATGGTGCCTG 60.449 63.158 0.00 0.00 32.09 4.85
340 341 1.480212 TTGACTCGGTCATGGTGCCT 61.480 55.000 7.43 0.00 42.40 4.75
341 342 0.392998 ATTGACTCGGTCATGGTGCC 60.393 55.000 7.43 0.00 42.40 5.01
342 343 1.009829 GATTGACTCGGTCATGGTGC 58.990 55.000 7.43 0.00 42.40 5.01
343 344 2.385013 TGATTGACTCGGTCATGGTG 57.615 50.000 7.43 0.00 42.40 4.17
344 345 2.158900 GGATGATTGACTCGGTCATGGT 60.159 50.000 7.43 0.00 42.40 3.55
345 346 2.487934 GGATGATTGACTCGGTCATGG 58.512 52.381 7.43 0.00 42.40 3.66
346 347 2.158914 TGGGATGATTGACTCGGTCATG 60.159 50.000 7.43 0.00 42.40 3.07
347 348 2.118679 TGGGATGATTGACTCGGTCAT 58.881 47.619 7.43 0.00 42.40 3.06
348 349 1.567357 TGGGATGATTGACTCGGTCA 58.433 50.000 3.02 3.02 41.09 4.02
349 350 2.555199 CTTGGGATGATTGACTCGGTC 58.445 52.381 0.00 0.00 0.00 4.79
350 351 1.210478 CCTTGGGATGATTGACTCGGT 59.790 52.381 0.00 0.00 0.00 4.69
351 352 1.486310 TCCTTGGGATGATTGACTCGG 59.514 52.381 0.00 0.00 0.00 4.63
352 353 2.939103 GTTCCTTGGGATGATTGACTCG 59.061 50.000 0.00 0.00 0.00 4.18
353 354 3.944015 CAGTTCCTTGGGATGATTGACTC 59.056 47.826 0.00 0.00 0.00 3.36
354 355 3.588842 TCAGTTCCTTGGGATGATTGACT 59.411 43.478 0.00 0.00 0.00 3.41
355 356 3.944015 CTCAGTTCCTTGGGATGATTGAC 59.056 47.826 0.00 0.00 0.00 3.18
356 357 3.623203 GCTCAGTTCCTTGGGATGATTGA 60.623 47.826 0.00 0.00 0.00 2.57
357 358 2.686915 GCTCAGTTCCTTGGGATGATTG 59.313 50.000 0.00 0.00 0.00 2.67
358 359 2.579860 AGCTCAGTTCCTTGGGATGATT 59.420 45.455 0.00 0.00 0.00 2.57
359 360 2.203584 AGCTCAGTTCCTTGGGATGAT 58.796 47.619 0.00 0.00 0.00 2.45
360 361 1.661463 AGCTCAGTTCCTTGGGATGA 58.339 50.000 0.00 0.00 0.00 2.92
361 362 2.490903 CAAAGCTCAGTTCCTTGGGATG 59.509 50.000 0.00 0.00 0.00 3.51
362 363 2.108952 ACAAAGCTCAGTTCCTTGGGAT 59.891 45.455 0.00 0.00 0.00 3.85
363 364 1.494721 ACAAAGCTCAGTTCCTTGGGA 59.505 47.619 0.00 0.00 0.00 4.37
364 365 1.986882 ACAAAGCTCAGTTCCTTGGG 58.013 50.000 0.00 0.00 0.00 4.12
365 366 3.077359 CCTACAAAGCTCAGTTCCTTGG 58.923 50.000 0.00 0.00 0.00 3.61
366 367 2.485814 GCCTACAAAGCTCAGTTCCTTG 59.514 50.000 0.00 0.00 0.00 3.61
367 368 2.784347 GCCTACAAAGCTCAGTTCCTT 58.216 47.619 0.00 0.00 0.00 3.36
368 369 1.338200 CGCCTACAAAGCTCAGTTCCT 60.338 52.381 0.00 0.00 0.00 3.36
369 370 1.079503 CGCCTACAAAGCTCAGTTCC 58.920 55.000 0.00 0.00 0.00 3.62
370 371 1.079503 CCGCCTACAAAGCTCAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
371 372 0.685097 TCCGCCTACAAAGCTCAGTT 59.315 50.000 0.00 0.00 0.00 3.16
372 373 0.037232 GTCCGCCTACAAAGCTCAGT 60.037 55.000 0.00 0.00 0.00 3.41
373 374 1.078759 CGTCCGCCTACAAAGCTCAG 61.079 60.000 0.00 0.00 0.00 3.35
374 375 1.080093 CGTCCGCCTACAAAGCTCA 60.080 57.895 0.00 0.00 0.00 4.26
375 376 2.453638 GCGTCCGCCTACAAAGCTC 61.454 63.158 0.00 0.00 34.56 4.09
376 377 2.434359 GCGTCCGCCTACAAAGCT 60.434 61.111 0.00 0.00 34.56 3.74
388 389 0.651031 GAAAATACTCTGCGGCGTCC 59.349 55.000 9.37 0.00 0.00 4.79
389 390 0.651031 GGAAAATACTCTGCGGCGTC 59.349 55.000 9.37 0.91 0.00 5.19
390 391 1.082117 CGGAAAATACTCTGCGGCGT 61.082 55.000 9.37 0.00 0.00 5.68
391 392 1.082117 ACGGAAAATACTCTGCGGCG 61.082 55.000 0.51 0.51 0.00 6.46
392 393 1.084289 AACGGAAAATACTCTGCGGC 58.916 50.000 0.00 0.00 0.00 6.53
393 394 1.396996 CCAACGGAAAATACTCTGCGG 59.603 52.381 0.00 0.00 0.00 5.69
394 395 2.073816 ACCAACGGAAAATACTCTGCG 58.926 47.619 0.00 0.00 0.00 5.18
395 396 2.161609 CCACCAACGGAAAATACTCTGC 59.838 50.000 0.00 0.00 0.00 4.26
396 397 3.188460 CACCACCAACGGAAAATACTCTG 59.812 47.826 0.00 0.00 0.00 3.35
397 398 3.071892 TCACCACCAACGGAAAATACTCT 59.928 43.478 0.00 0.00 0.00 3.24
398 399 3.404899 TCACCACCAACGGAAAATACTC 58.595 45.455 0.00 0.00 0.00 2.59
399 400 3.495434 TCACCACCAACGGAAAATACT 57.505 42.857 0.00 0.00 0.00 2.12
400 401 3.566742 AGTTCACCACCAACGGAAAATAC 59.433 43.478 0.00 0.00 0.00 1.89
401 402 3.822940 AGTTCACCACCAACGGAAAATA 58.177 40.909 0.00 0.00 0.00 1.40
402 403 2.661718 AGTTCACCACCAACGGAAAAT 58.338 42.857 0.00 0.00 0.00 1.82
403 404 2.131776 AGTTCACCACCAACGGAAAA 57.868 45.000 0.00 0.00 0.00 2.29
404 405 2.018515 GAAGTTCACCACCAACGGAAA 58.981 47.619 0.00 0.00 0.00 3.13
405 406 1.670791 GAAGTTCACCACCAACGGAA 58.329 50.000 0.00 0.00 0.00 4.30
406 407 0.179040 GGAAGTTCACCACCAACGGA 60.179 55.000 5.01 0.00 0.00 4.69
407 408 0.464735 TGGAAGTTCACCACCAACGG 60.465 55.000 5.01 0.00 32.03 4.44
408 409 1.384525 TTGGAAGTTCACCACCAACG 58.615 50.000 5.01 0.00 37.46 4.10
409 410 2.494073 TGTTTGGAAGTTCACCACCAAC 59.506 45.455 5.01 0.00 41.22 3.77
410 411 2.808919 TGTTTGGAAGTTCACCACCAA 58.191 42.857 5.01 0.00 40.05 3.67
411 412 2.516227 TGTTTGGAAGTTCACCACCA 57.484 45.000 5.01 0.00 37.13 4.17
412 413 3.132111 ACATTGTTTGGAAGTTCACCACC 59.868 43.478 5.01 0.00 37.13 4.61
413 414 4.359706 GACATTGTTTGGAAGTTCACCAC 58.640 43.478 5.01 0.00 37.13 4.16
414 415 3.066064 CGACATTGTTTGGAAGTTCACCA 59.934 43.478 5.01 0.00 35.47 4.17
415 416 3.066203 ACGACATTGTTTGGAAGTTCACC 59.934 43.478 5.01 0.00 0.00 4.02
416 417 4.279659 GACGACATTGTTTGGAAGTTCAC 58.720 43.478 5.01 0.00 0.00 3.18
417 418 3.001838 CGACGACATTGTTTGGAAGTTCA 59.998 43.478 5.01 0.00 0.00 3.18
418 419 3.541711 CGACGACATTGTTTGGAAGTTC 58.458 45.455 0.00 0.00 0.00 3.01
419 420 2.289547 CCGACGACATTGTTTGGAAGTT 59.710 45.455 0.00 0.00 0.00 2.66
420 421 1.871039 CCGACGACATTGTTTGGAAGT 59.129 47.619 0.00 0.00 0.00 3.01
421 422 1.399727 GCCGACGACATTGTTTGGAAG 60.400 52.381 0.00 0.00 0.00 3.46
422 423 0.589223 GCCGACGACATTGTTTGGAA 59.411 50.000 0.00 0.00 0.00 3.53
423 424 0.533085 TGCCGACGACATTGTTTGGA 60.533 50.000 0.00 0.00 0.00 3.53
424 425 0.309302 TTGCCGACGACATTGTTTGG 59.691 50.000 0.00 0.00 0.00 3.28
425 426 1.978097 CATTGCCGACGACATTGTTTG 59.022 47.619 0.00 0.00 0.00 2.93
426 427 1.665735 GCATTGCCGACGACATTGTTT 60.666 47.619 7.66 0.00 0.00 2.83
427 428 0.109781 GCATTGCCGACGACATTGTT 60.110 50.000 7.66 0.00 0.00 2.83
428 429 1.501741 GCATTGCCGACGACATTGT 59.498 52.632 7.66 0.00 0.00 2.71
429 430 1.226379 GGCATTGCCGACGACATTG 60.226 57.895 12.82 0.00 39.62 2.82
430 431 3.187058 GGCATTGCCGACGACATT 58.813 55.556 12.82 0.00 39.62 2.71
439 440 0.811281 AGCTTTAAGACGGCATTGCC 59.189 50.000 18.10 18.10 46.75 4.52
440 441 3.971032 ATAGCTTTAAGACGGCATTGC 57.029 42.857 0.00 0.00 0.00 3.56
441 442 7.417612 ACAAATATAGCTTTAAGACGGCATTG 58.582 34.615 0.00 0.00 0.00 2.82
442 443 7.568199 ACAAATATAGCTTTAAGACGGCATT 57.432 32.000 0.00 0.00 0.00 3.56
443 444 7.255139 GGAACAAATATAGCTTTAAGACGGCAT 60.255 37.037 0.00 0.00 0.00 4.40
444 445 6.037830 GGAACAAATATAGCTTTAAGACGGCA 59.962 38.462 0.00 0.00 0.00 5.69
445 446 6.037830 TGGAACAAATATAGCTTTAAGACGGC 59.962 38.462 0.00 0.00 31.92 5.68
446 447 7.254795 CCTGGAACAAATATAGCTTTAAGACGG 60.255 40.741 0.00 0.00 38.70 4.79
447 448 7.630924 CCTGGAACAAATATAGCTTTAAGACG 58.369 38.462 0.00 0.00 38.70 4.18
448 449 7.283354 AGCCTGGAACAAATATAGCTTTAAGAC 59.717 37.037 0.00 0.00 38.70 3.01
449 450 7.346471 AGCCTGGAACAAATATAGCTTTAAGA 58.654 34.615 0.00 0.00 38.70 2.10
450 451 7.573968 AGCCTGGAACAAATATAGCTTTAAG 57.426 36.000 0.00 0.00 38.70 1.85
451 452 8.491134 TCTAGCCTGGAACAAATATAGCTTTAA 58.509 33.333 0.00 0.00 38.70 1.52
452 453 7.931948 GTCTAGCCTGGAACAAATATAGCTTTA 59.068 37.037 0.00 0.00 38.70 1.85
453 454 6.768381 GTCTAGCCTGGAACAAATATAGCTTT 59.232 38.462 0.00 0.00 38.70 3.51
454 455 6.292150 GTCTAGCCTGGAACAAATATAGCTT 58.708 40.000 0.00 0.00 38.70 3.74
455 456 5.221742 GGTCTAGCCTGGAACAAATATAGCT 60.222 44.000 0.00 0.00 38.70 3.32
456 457 4.998033 GGTCTAGCCTGGAACAAATATAGC 59.002 45.833 0.00 0.00 38.70 2.97
457 458 6.174720 TGGTCTAGCCTGGAACAAATATAG 57.825 41.667 0.00 0.00 38.70 1.31
458 459 6.763715 ATGGTCTAGCCTGGAACAAATATA 57.236 37.500 0.00 0.00 38.70 0.86
459 460 5.653255 ATGGTCTAGCCTGGAACAAATAT 57.347 39.130 0.00 0.00 38.70 1.28
460 461 5.903010 TCTATGGTCTAGCCTGGAACAAATA 59.097 40.000 0.00 0.00 38.70 1.40
461 462 4.721776 TCTATGGTCTAGCCTGGAACAAAT 59.278 41.667 0.00 0.00 38.70 2.32
462 463 4.101114 TCTATGGTCTAGCCTGGAACAAA 58.899 43.478 0.00 0.00 38.70 2.83
463 464 3.706594 CTCTATGGTCTAGCCTGGAACAA 59.293 47.826 0.00 0.00 38.70 2.83
464 465 3.300388 CTCTATGGTCTAGCCTGGAACA 58.700 50.000 0.00 0.00 38.35 3.18
465 466 2.036604 GCTCTATGGTCTAGCCTGGAAC 59.963 54.545 0.00 0.00 38.35 3.62
466 467 2.320781 GCTCTATGGTCTAGCCTGGAA 58.679 52.381 0.00 0.00 38.35 3.53
467 468 1.819697 CGCTCTATGGTCTAGCCTGGA 60.820 57.143 0.00 0.00 38.35 3.86
468 469 0.600557 CGCTCTATGGTCTAGCCTGG 59.399 60.000 5.06 0.00 38.35 4.45
469 470 0.038709 GCGCTCTATGGTCTAGCCTG 60.039 60.000 0.00 0.00 38.35 4.85
470 471 0.468214 TGCGCTCTATGGTCTAGCCT 60.468 55.000 9.73 0.00 38.35 4.58
471 472 0.389391 TTGCGCTCTATGGTCTAGCC 59.611 55.000 9.73 0.00 32.50 3.93
472 473 2.225068 TTTGCGCTCTATGGTCTAGC 57.775 50.000 9.73 0.00 0.00 3.42
473 474 3.786635 AGTTTTGCGCTCTATGGTCTAG 58.213 45.455 9.73 0.00 0.00 2.43
474 475 3.887621 AGTTTTGCGCTCTATGGTCTA 57.112 42.857 9.73 0.00 0.00 2.59
475 476 2.770164 AGTTTTGCGCTCTATGGTCT 57.230 45.000 9.73 0.00 0.00 3.85
476 477 3.062234 GTGTAGTTTTGCGCTCTATGGTC 59.938 47.826 9.73 0.00 0.00 4.02
477 478 3.000727 GTGTAGTTTTGCGCTCTATGGT 58.999 45.455 9.73 0.00 0.00 3.55
478 479 3.000041 TGTGTAGTTTTGCGCTCTATGG 59.000 45.455 9.73 0.00 0.00 2.74
479 480 4.661993 TTGTGTAGTTTTGCGCTCTATG 57.338 40.909 9.73 0.00 0.00 2.23
480 481 4.695455 ACATTGTGTAGTTTTGCGCTCTAT 59.305 37.500 9.73 0.00 0.00 1.98
481 482 4.062293 ACATTGTGTAGTTTTGCGCTCTA 58.938 39.130 9.73 3.58 0.00 2.43
482 483 2.878406 ACATTGTGTAGTTTTGCGCTCT 59.122 40.909 9.73 4.60 0.00 4.09
483 484 2.973224 CACATTGTGTAGTTTTGCGCTC 59.027 45.455 9.73 0.00 0.00 5.03
484 485 2.287547 CCACATTGTGTAGTTTTGCGCT 60.288 45.455 15.34 0.00 0.00 5.92
485 486 2.050691 CCACATTGTGTAGTTTTGCGC 58.949 47.619 15.34 0.00 0.00 6.09
486 487 3.347958 ACCACATTGTGTAGTTTTGCG 57.652 42.857 15.34 0.00 0.00 4.85
487 488 5.460748 GGTTAACCACATTGTGTAGTTTTGC 59.539 40.000 20.12 7.08 35.64 3.68
488 489 5.683743 CGGTTAACCACATTGTGTAGTTTTG 59.316 40.000 24.14 1.25 35.14 2.44
489 490 5.589452 TCGGTTAACCACATTGTGTAGTTTT 59.411 36.000 24.14 3.76 35.14 2.43
490 491 5.124645 TCGGTTAACCACATTGTGTAGTTT 58.875 37.500 24.14 5.90 35.14 2.66
491 492 4.706035 TCGGTTAACCACATTGTGTAGTT 58.294 39.130 24.14 14.32 35.14 2.24
492 493 4.039488 TCTCGGTTAACCACATTGTGTAGT 59.961 41.667 24.14 4.62 35.14 2.73
493 494 4.562082 TCTCGGTTAACCACATTGTGTAG 58.438 43.478 24.14 4.13 35.14 2.74
494 495 4.562082 CTCTCGGTTAACCACATTGTGTA 58.438 43.478 24.14 0.00 35.14 2.90
495 496 3.399330 CTCTCGGTTAACCACATTGTGT 58.601 45.455 24.14 0.83 35.14 3.72
496 497 2.159627 GCTCTCGGTTAACCACATTGTG 59.840 50.000 24.14 9.92 35.14 3.33
497 498 2.423577 GCTCTCGGTTAACCACATTGT 58.576 47.619 24.14 0.00 35.14 2.71
498 499 1.737793 GGCTCTCGGTTAACCACATTG 59.262 52.381 24.14 7.74 35.14 2.82
499 500 1.339727 GGGCTCTCGGTTAACCACATT 60.340 52.381 24.14 0.00 35.14 2.71
500 501 0.252197 GGGCTCTCGGTTAACCACAT 59.748 55.000 24.14 0.00 35.14 3.21
501 502 1.675219 GGGCTCTCGGTTAACCACA 59.325 57.895 24.14 9.13 35.14 4.17
502 503 1.447314 CGGGCTCTCGGTTAACCAC 60.447 63.158 24.14 7.62 35.14 4.16
503 504 2.975536 CGGGCTCTCGGTTAACCA 59.024 61.111 24.14 10.51 35.14 3.67
504 505 1.669999 TAGCGGGCTCTCGGTTAACC 61.670 60.000 15.13 15.13 41.30 2.85
505 506 0.248949 CTAGCGGGCTCTCGGTTAAC 60.249 60.000 0.00 0.00 41.30 2.01
506 507 2.012902 GCTAGCGGGCTCTCGGTTAA 62.013 60.000 0.00 0.00 41.30 2.01
507 508 2.487532 GCTAGCGGGCTCTCGGTTA 61.488 63.158 0.00 0.00 41.30 2.85
508 509 3.839432 GCTAGCGGGCTCTCGGTT 61.839 66.667 0.00 0.00 41.30 4.44
511 512 3.610669 ATGGCTAGCGGGCTCTCG 61.611 66.667 9.00 0.00 41.48 4.04
512 513 2.030262 CATGGCTAGCGGGCTCTC 59.970 66.667 9.00 0.00 41.48 3.20
513 514 1.048724 TAACATGGCTAGCGGGCTCT 61.049 55.000 9.00 0.00 41.48 4.09
514 515 0.179056 TTAACATGGCTAGCGGGCTC 60.179 55.000 9.00 0.00 41.48 4.70
515 516 0.474184 ATTAACATGGCTAGCGGGCT 59.526 50.000 9.00 0.00 41.48 5.19
516 517 0.593128 CATTAACATGGCTAGCGGGC 59.407 55.000 9.00 0.00 41.27 6.13
517 518 1.967319 ACATTAACATGGCTAGCGGG 58.033 50.000 9.00 2.89 34.27 6.13
518 519 2.290641 GGAACATTAACATGGCTAGCGG 59.709 50.000 9.00 3.28 34.27 5.52
519 520 3.002656 CAGGAACATTAACATGGCTAGCG 59.997 47.826 9.00 0.00 34.27 4.26
520 521 4.199310 TCAGGAACATTAACATGGCTAGC 58.801 43.478 6.04 6.04 34.27 3.42
521 522 4.274459 GCTCAGGAACATTAACATGGCTAG 59.726 45.833 0.00 0.00 34.27 3.42
522 523 4.199310 GCTCAGGAACATTAACATGGCTA 58.801 43.478 0.00 0.00 34.27 3.93
523 524 3.019564 GCTCAGGAACATTAACATGGCT 58.980 45.455 0.00 0.00 34.27 4.75
524 525 2.099756 GGCTCAGGAACATTAACATGGC 59.900 50.000 0.00 0.00 34.27 4.40
525 526 3.355378 TGGCTCAGGAACATTAACATGG 58.645 45.455 0.00 0.00 34.27 3.66
526 527 5.389859 TTTGGCTCAGGAACATTAACATG 57.610 39.130 0.00 0.00 36.34 3.21
527 528 4.463891 CCTTTGGCTCAGGAACATTAACAT 59.536 41.667 0.00 0.00 32.41 2.71
528 529 3.826157 CCTTTGGCTCAGGAACATTAACA 59.174 43.478 0.00 0.00 32.41 2.41
529 530 4.079253 TCCTTTGGCTCAGGAACATTAAC 58.921 43.478 3.04 0.00 37.51 2.01
530 531 4.335416 CTCCTTTGGCTCAGGAACATTAA 58.665 43.478 6.68 0.00 40.09 1.40
531 532 3.873801 GCTCCTTTGGCTCAGGAACATTA 60.874 47.826 6.68 0.00 40.09 1.90
532 533 2.800250 CTCCTTTGGCTCAGGAACATT 58.200 47.619 6.68 0.00 40.09 2.71
533 534 1.615384 GCTCCTTTGGCTCAGGAACAT 60.615 52.381 6.68 0.00 40.09 2.71
534 535 0.250901 GCTCCTTTGGCTCAGGAACA 60.251 55.000 6.68 0.00 40.09 3.18
535 536 0.037447 AGCTCCTTTGGCTCAGGAAC 59.963 55.000 6.68 2.97 40.09 3.62
536 537 2.468015 AGCTCCTTTGGCTCAGGAA 58.532 52.632 6.68 0.00 40.09 3.36
537 538 4.239991 AGCTCCTTTGGCTCAGGA 57.760 55.556 5.30 5.30 38.18 3.86
542 543 2.359230 GCACGAGCTCCTTTGGCT 60.359 61.111 8.47 0.00 43.26 4.75
543 544 1.986575 GATGCACGAGCTCCTTTGGC 61.987 60.000 8.47 5.51 42.74 4.52
544 545 1.699656 CGATGCACGAGCTCCTTTGG 61.700 60.000 8.47 0.00 45.77 3.28
545 546 1.712081 CGATGCACGAGCTCCTTTG 59.288 57.895 8.47 4.18 45.77 2.77
546 547 2.103042 GCGATGCACGAGCTCCTTT 61.103 57.895 8.47 0.00 45.77 3.11
547 548 2.510238 GCGATGCACGAGCTCCTT 60.510 61.111 8.47 0.00 45.77 3.36
548 549 4.862092 CGCGATGCACGAGCTCCT 62.862 66.667 8.47 0.00 45.77 3.69
550 551 3.611792 GACGCGATGCACGAGCTC 61.612 66.667 15.93 2.73 45.03 4.09
553 554 4.498520 AGGGACGCGATGCACGAG 62.499 66.667 15.93 10.88 45.77 4.18
554 555 4.492160 GAGGGACGCGATGCACGA 62.492 66.667 15.93 0.00 45.77 4.35
555 556 4.794439 TGAGGGACGCGATGCACG 62.794 66.667 15.93 0.00 45.66 5.34
556 557 3.188786 GTGAGGGACGCGATGCAC 61.189 66.667 15.93 9.77 0.00 4.57
557 558 3.647649 CTGTGAGGGACGCGATGCA 62.648 63.158 15.93 0.00 0.00 3.96
558 559 2.887568 CTGTGAGGGACGCGATGC 60.888 66.667 15.93 1.70 0.00 3.91
559 560 1.807165 CACTGTGAGGGACGCGATG 60.807 63.158 15.93 0.00 0.00 3.84
560 561 1.938657 CTCACTGTGAGGGACGCGAT 61.939 60.000 26.36 0.00 40.71 4.58
561 562 2.596338 TCACTGTGAGGGACGCGA 60.596 61.111 15.93 0.00 0.00 5.87
562 563 2.126307 CTCACTGTGAGGGACGCG 60.126 66.667 26.36 3.53 40.71 6.01
569 570 1.517242 GGCAAGAACCTCACTGTGAG 58.483 55.000 26.94 26.94 43.91 3.51
570 571 0.108585 GGGCAAGAACCTCACTGTGA 59.891 55.000 10.50 10.50 0.00 3.58
571 572 0.109342 AGGGCAAGAACCTCACTGTG 59.891 55.000 0.17 0.17 31.01 3.66
572 573 0.846693 AAGGGCAAGAACCTCACTGT 59.153 50.000 0.00 0.00 37.35 3.55
573 574 1.242076 CAAGGGCAAGAACCTCACTG 58.758 55.000 0.00 0.00 37.35 3.66
574 575 0.111253 CCAAGGGCAAGAACCTCACT 59.889 55.000 0.00 0.00 37.35 3.41
575 576 0.110486 TCCAAGGGCAAGAACCTCAC 59.890 55.000 0.00 0.00 37.35 3.51
576 577 0.850100 TTCCAAGGGCAAGAACCTCA 59.150 50.000 0.00 0.00 37.35 3.86
577 578 1.995376 TTTCCAAGGGCAAGAACCTC 58.005 50.000 0.00 0.00 37.35 3.85
578 579 2.702270 ATTTCCAAGGGCAAGAACCT 57.298 45.000 0.00 0.00 40.96 3.50
579 580 3.664107 GAAATTTCCAAGGGCAAGAACC 58.336 45.455 6.95 0.00 0.00 3.62
580 581 3.005367 TCGAAATTTCCAAGGGCAAGAAC 59.995 43.478 12.54 0.00 0.00 3.01
581 582 3.226777 TCGAAATTTCCAAGGGCAAGAA 58.773 40.909 12.54 0.00 0.00 2.52
582 583 2.870175 TCGAAATTTCCAAGGGCAAGA 58.130 42.857 12.54 0.00 0.00 3.02
583 584 3.255642 TCTTCGAAATTTCCAAGGGCAAG 59.744 43.478 20.86 9.02 0.00 4.01
584 585 3.226777 TCTTCGAAATTTCCAAGGGCAA 58.773 40.909 20.86 3.80 0.00 4.52
585 586 2.870175 TCTTCGAAATTTCCAAGGGCA 58.130 42.857 20.86 4.10 0.00 5.36
586 587 3.443681 TGATCTTCGAAATTTCCAAGGGC 59.556 43.478 20.86 14.80 0.00 5.19
587 588 4.943705 TCTGATCTTCGAAATTTCCAAGGG 59.056 41.667 20.86 11.54 0.00 3.95
588 589 5.065731 CCTCTGATCTTCGAAATTTCCAAGG 59.934 44.000 20.86 12.71 0.00 3.61
589 590 5.877012 TCCTCTGATCTTCGAAATTTCCAAG 59.123 40.000 16.73 16.73 0.00 3.61
590 591 5.804639 TCCTCTGATCTTCGAAATTTCCAA 58.195 37.500 12.54 5.35 0.00 3.53
591 592 5.420725 TCCTCTGATCTTCGAAATTTCCA 57.579 39.130 12.54 0.00 0.00 3.53
592 593 4.272261 GCTCCTCTGATCTTCGAAATTTCC 59.728 45.833 12.54 0.00 0.00 3.13
593 594 4.026145 CGCTCCTCTGATCTTCGAAATTTC 60.026 45.833 8.20 8.20 0.00 2.17
594 595 3.868077 CGCTCCTCTGATCTTCGAAATTT 59.132 43.478 0.00 0.00 0.00 1.82
595 596 3.131223 TCGCTCCTCTGATCTTCGAAATT 59.869 43.478 0.00 0.00 0.00 1.82
596 597 2.690497 TCGCTCCTCTGATCTTCGAAAT 59.310 45.455 0.00 0.00 0.00 2.17
597 598 2.092323 TCGCTCCTCTGATCTTCGAAA 58.908 47.619 0.00 0.00 0.00 3.46
598 599 1.751437 TCGCTCCTCTGATCTTCGAA 58.249 50.000 0.00 0.00 0.00 3.71
599 600 1.606189 CATCGCTCCTCTGATCTTCGA 59.394 52.381 0.00 0.00 0.00 3.71
600 601 1.336440 ACATCGCTCCTCTGATCTTCG 59.664 52.381 0.00 0.00 0.00 3.79
601 602 2.288152 GGACATCGCTCCTCTGATCTTC 60.288 54.545 0.00 0.00 0.00 2.87
602 603 1.686052 GGACATCGCTCCTCTGATCTT 59.314 52.381 0.00 0.00 0.00 2.40
603 604 1.327303 GGACATCGCTCCTCTGATCT 58.673 55.000 0.00 0.00 0.00 2.75
604 605 0.316841 GGGACATCGCTCCTCTGATC 59.683 60.000 0.00 0.00 0.00 2.92
605 606 0.105760 AGGGACATCGCTCCTCTGAT 60.106 55.000 0.00 0.00 33.57 2.90
606 607 0.551396 TAGGGACATCGCTCCTCTGA 59.449 55.000 1.15 0.00 39.91 3.27
607 608 0.958091 CTAGGGACATCGCTCCTCTG 59.042 60.000 1.15 0.00 39.91 3.35
608 609 0.178975 CCTAGGGACATCGCTCCTCT 60.179 60.000 0.00 0.00 39.91 3.69
609 610 1.811645 GCCTAGGGACATCGCTCCTC 61.812 65.000 11.72 0.00 39.91 3.71
610 611 1.834822 GCCTAGGGACATCGCTCCT 60.835 63.158 11.72 0.00 39.91 3.69
611 612 1.403687 AAGCCTAGGGACATCGCTCC 61.404 60.000 11.72 0.00 39.91 4.70
612 613 0.249657 CAAGCCTAGGGACATCGCTC 60.250 60.000 11.72 0.00 39.91 5.03
613 614 1.690219 CCAAGCCTAGGGACATCGCT 61.690 60.000 11.72 3.75 42.15 4.93
614 615 1.227674 CCAAGCCTAGGGACATCGC 60.228 63.158 11.72 0.00 0.00 4.58
634 635 1.152673 GGAGCTATTGGCCCTTGGG 60.153 63.158 0.00 0.32 43.05 4.12
635 636 0.466922 CAGGAGCTATTGGCCCTTGG 60.467 60.000 0.00 0.00 43.05 3.61
636 637 0.257039 ACAGGAGCTATTGGCCCTTG 59.743 55.000 0.00 0.00 43.05 3.61
688 689 7.035004 CCACAACCATTCATTCGAATTACATT 58.965 34.615 8.21 0.00 39.96 2.71
694 695 3.367292 GCACCACAACCATTCATTCGAAT 60.367 43.478 4.39 4.39 42.81 3.34
713 714 2.668280 GGCTTCGAAGACGTGGCAC 61.668 63.158 28.95 7.79 40.69 5.01
717 718 0.934496 TTGTTGGCTTCGAAGACGTG 59.066 50.000 28.95 2.90 36.62 4.49
941 951 0.039764 GAAGAAGGTGGGAAAGGGGG 59.960 60.000 0.00 0.00 0.00 5.40
990 1005 0.748367 AGCTAGACATCACTCGCCGA 60.748 55.000 0.00 0.00 30.50 5.54
1205 1220 7.978925 AGAAATCGGGAGAAATTAGACCATAT 58.021 34.615 0.00 0.00 45.37 1.78
1301 1318 7.172757 CACATTTCTTCAAAACCTGAAAAACG 58.827 34.615 0.00 0.00 43.54 3.60
1359 1376 1.818060 TGATGCCTCCAATTTCAACCG 59.182 47.619 0.00 0.00 0.00 4.44
1447 1464 1.135046 GTGCATCATCGGATCGACTG 58.865 55.000 0.00 0.00 39.18 3.51
1450 1467 0.746659 ACTGTGCATCATCGGATCGA 59.253 50.000 0.00 0.00 41.13 3.59
1515 1532 4.696455 TGCTGCTTCAAATCGATCAGATA 58.304 39.130 12.33 0.10 38.98 1.98
1599 1618 4.631813 ACAAATTCTAGCGAGTGATGAACC 59.368 41.667 0.00 0.00 0.00 3.62
1930 1974 1.204146 GGTGGGCTGGTCTCTATTGA 58.796 55.000 0.00 0.00 0.00 2.57
1931 1976 0.181350 GGGTGGGCTGGTCTCTATTG 59.819 60.000 0.00 0.00 0.00 1.90
2006 2104 3.704061 AGTGCAAGAAAAAGGCCAAAGTA 59.296 39.130 5.01 0.00 0.00 2.24
2095 2197 5.183904 GCAACTCATTTAGTTCATGGAACCT 59.816 40.000 5.54 0.00 45.64 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.