Multiple sequence alignment - TraesCS2D01G044300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G044300 chr2D 100.000 4109 0 0 1 4109 16014681 16018789 0.000000e+00 7589
1 TraesCS2D01G044300 chr2D 84.818 685 97 6 2426 3108 16129830 16130509 0.000000e+00 682
2 TraesCS2D01G044300 chr2D 84.493 690 89 13 2426 3107 16237472 16238151 0.000000e+00 665
3 TraesCS2D01G044300 chr2D 87.273 550 61 3 1015 1561 16232552 16233095 1.620000e-173 619
4 TraesCS2D01G044300 chr2D 85.949 548 64 4 1036 1576 16124676 16125217 1.280000e-159 573
5 TraesCS2D01G044300 chr2D 83.871 434 70 0 1706 2139 16236991 16237424 8.220000e-112 414
6 TraesCS2D01G044300 chr2A 88.611 2476 239 17 1638 4109 17931299 17933735 0.000000e+00 2970
7 TraesCS2D01G044300 chr2A 95.683 973 36 2 616 1588 17929677 17930643 0.000000e+00 1559
8 TraesCS2D01G044300 chr2A 84.211 741 82 15 839 1578 17892979 17893685 0.000000e+00 688
9 TraesCS2D01G044300 chr2A 84.783 690 89 11 2426 3108 18010890 18011570 0.000000e+00 678
10 TraesCS2D01G044300 chr2A 85.759 639 89 2 2471 3108 17984974 17985611 0.000000e+00 675
11 TraesCS2D01G044300 chr2A 86.496 548 58 5 1036 1576 17981438 17981976 4.580000e-164 588
12 TraesCS2D01G044300 chr2A 82.949 434 74 0 1706 2139 17984449 17984882 3.850000e-105 392
13 TraesCS2D01G044300 chr2A 81.461 356 40 11 273 605 17929267 17929619 6.770000e-68 268
14 TraesCS2D01G044300 chr2B 90.904 1814 126 17 1629 3436 28272924 28274704 0.000000e+00 2399
15 TraesCS2D01G044300 chr2B 90.428 1776 117 19 1629 3386 28293146 28294886 0.000000e+00 2289
16 TraesCS2D01G044300 chr2B 90.462 975 40 22 616 1585 28271561 28272487 0.000000e+00 1236
17 TraesCS2D01G044300 chr2B 88.788 553 51 6 1036 1584 28292162 28292707 0.000000e+00 667
18 TraesCS2D01G044300 chr2B 85.220 636 92 2 2474 3108 28358228 28358862 0.000000e+00 652
19 TraesCS2D01G044300 chr2B 82.994 688 107 8 2426 3108 28339918 28340600 7.550000e-172 614
20 TraesCS2D01G044300 chr2B 86.496 548 61 4 1036 1576 28331659 28332200 1.270000e-164 590
21 TraesCS2D01G044300 chr2B 86.389 529 63 3 1036 1561 28349232 28349754 1.660000e-158 569
22 TraesCS2D01G044300 chr2B 85.221 521 67 2 3589 4109 28274859 28275369 1.010000e-145 527
23 TraesCS2D01G044300 chr2B 85.331 484 61 2 3626 4109 28295535 28296008 3.690000e-135 492
24 TraesCS2D01G044300 chr2B 84.793 434 66 0 1706 2139 28357704 28358137 1.750000e-118 436
25 TraesCS2D01G044300 chr3D 98.413 189 2 1 84 271 3541881 3542069 8.510000e-87 331
26 TraesCS2D01G044300 chr7D 98.907 183 1 1 90 271 433896562 433896380 3.960000e-85 326
27 TraesCS2D01G044300 chr7D 97.368 190 4 1 90 278 412100694 412100505 5.120000e-84 322
28 TraesCS2D01G044300 chr7D 94.975 199 9 1 85 282 45145963 45145765 1.110000e-80 311
29 TraesCS2D01G044300 chrUn 97.861 187 2 2 90 274 175473986 175473800 5.120000e-84 322
30 TraesCS2D01G044300 chr5D 97.861 187 2 2 90 274 149772577 149772391 5.120000e-84 322
31 TraesCS2D01G044300 chr5D 81.951 205 35 2 1717 1920 520839855 520840058 5.460000e-39 172
32 TraesCS2D01G044300 chr4D 96.373 193 6 1 80 271 508931222 508931030 2.380000e-82 316
33 TraesCS2D01G044300 chr5B 97.326 187 2 3 90 274 629650001 629649816 8.570000e-82 315
34 TraesCS2D01G044300 chr7B 95.876 194 6 2 86 277 129963824 129963631 3.080000e-81 313


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G044300 chr2D 16014681 16018789 4108 False 7589.000000 7589 100.000000 1 4109 1 chr2D.!!$F1 4108
1 TraesCS2D01G044300 chr2D 16129830 16130509 679 False 682.000000 682 84.818000 2426 3108 1 chr2D.!!$F3 682
2 TraesCS2D01G044300 chr2D 16124676 16125217 541 False 573.000000 573 85.949000 1036 1576 1 chr2D.!!$F2 540
3 TraesCS2D01G044300 chr2D 16232552 16238151 5599 False 566.000000 665 85.212333 1015 3107 3 chr2D.!!$F4 2092
4 TraesCS2D01G044300 chr2A 17929267 17933735 4468 False 1599.000000 2970 88.585000 273 4109 3 chr2A.!!$F3 3836
5 TraesCS2D01G044300 chr2A 17892979 17893685 706 False 688.000000 688 84.211000 839 1578 1 chr2A.!!$F1 739
6 TraesCS2D01G044300 chr2A 18010890 18011570 680 False 678.000000 678 84.783000 2426 3108 1 chr2A.!!$F2 682
7 TraesCS2D01G044300 chr2A 17981438 17985611 4173 False 551.666667 675 85.068000 1036 3108 3 chr2A.!!$F4 2072
8 TraesCS2D01G044300 chr2B 28271561 28275369 3808 False 1387.333333 2399 88.862333 616 4109 3 chr2B.!!$F4 3493
9 TraesCS2D01G044300 chr2B 28292162 28296008 3846 False 1149.333333 2289 88.182333 1036 4109 3 chr2B.!!$F5 3073
10 TraesCS2D01G044300 chr2B 28339918 28340600 682 False 614.000000 614 82.994000 2426 3108 1 chr2B.!!$F2 682
11 TraesCS2D01G044300 chr2B 28331659 28332200 541 False 590.000000 590 86.496000 1036 1576 1 chr2B.!!$F1 540
12 TraesCS2D01G044300 chr2B 28349232 28349754 522 False 569.000000 569 86.389000 1036 1561 1 chr2B.!!$F3 525
13 TraesCS2D01G044300 chr2B 28357704 28358862 1158 False 544.000000 652 85.006500 1706 3108 2 chr2B.!!$F6 1402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.105709 CCCAAAAAGTCCCACCCTGT 60.106 55.0 0.00 0.0 0.0 4.00 F
1008 1084 0.036105 ACTGATCAGCCATGTCGCAA 60.036 50.0 22.83 0.0 0.0 4.85 F
1497 1576 0.107945 GGCAGGTCAAGAAGATCGCT 60.108 55.0 0.00 0.0 30.6 4.93 F
1701 7110 0.323816 TGTGCTCACCTCCTCGATCT 60.324 55.0 0.00 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1576 0.038599 TGGTGAGGAGGTGCGTAGTA 59.961 55.0 0.00 0.0 0.00 1.82 R
2619 8043 0.171231 TGCTCAGATCGTCTTCGGTG 59.829 55.0 0.00 0.0 37.69 4.94 R
3060 8490 0.391793 GGAGCTTCTCCTTTCGGTGG 60.392 60.0 5.65 0.0 46.41 4.61 R
3586 9019 0.249405 GCTCTGCGAGAATGAGAGGG 60.249 60.0 9.32 0.0 34.87 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.303971 AGAATTTGGATCTAGATCTTGCGG 58.696 41.667 27.65 0.00 37.92 5.69
24 25 4.963318 ATTTGGATCTAGATCTTGCGGA 57.037 40.909 27.65 11.74 37.92 5.54
25 26 4.753516 TTTGGATCTAGATCTTGCGGAA 57.246 40.909 27.65 13.15 37.92 4.30
26 27 4.963318 TTGGATCTAGATCTTGCGGAAT 57.037 40.909 27.65 0.00 37.92 3.01
27 28 4.527509 TGGATCTAGATCTTGCGGAATC 57.472 45.455 27.65 11.57 37.92 2.52
28 29 3.259374 TGGATCTAGATCTTGCGGAATCC 59.741 47.826 27.65 12.59 37.92 3.01
29 30 3.368948 GGATCTAGATCTTGCGGAATCCC 60.369 52.174 27.65 7.65 37.92 3.85
30 31 2.964209 TCTAGATCTTGCGGAATCCCT 58.036 47.619 0.00 0.00 0.00 4.20
31 32 3.309296 TCTAGATCTTGCGGAATCCCTT 58.691 45.455 0.00 0.00 0.00 3.95
32 33 3.711704 TCTAGATCTTGCGGAATCCCTTT 59.288 43.478 0.00 0.00 0.00 3.11
33 34 3.372440 AGATCTTGCGGAATCCCTTTT 57.628 42.857 0.00 0.00 0.00 2.27
34 35 3.019564 AGATCTTGCGGAATCCCTTTTG 58.980 45.455 0.00 0.00 0.00 2.44
35 36 2.577606 TCTTGCGGAATCCCTTTTGA 57.422 45.000 0.00 0.00 0.00 2.69
36 37 2.436417 TCTTGCGGAATCCCTTTTGAG 58.564 47.619 0.00 0.00 0.00 3.02
37 38 2.039746 TCTTGCGGAATCCCTTTTGAGA 59.960 45.455 0.00 0.00 0.00 3.27
38 39 2.113860 TGCGGAATCCCTTTTGAGAG 57.886 50.000 0.00 0.00 0.00 3.20
39 40 0.735471 GCGGAATCCCTTTTGAGAGC 59.265 55.000 0.00 0.00 0.00 4.09
40 41 1.680249 GCGGAATCCCTTTTGAGAGCT 60.680 52.381 0.00 0.00 0.00 4.09
41 42 2.012673 CGGAATCCCTTTTGAGAGCTG 58.987 52.381 0.00 0.00 0.00 4.24
42 43 2.373224 GGAATCCCTTTTGAGAGCTGG 58.627 52.381 0.00 0.00 0.00 4.85
43 44 2.025887 GGAATCCCTTTTGAGAGCTGGA 60.026 50.000 0.00 0.00 0.00 3.86
44 45 3.562176 GGAATCCCTTTTGAGAGCTGGAA 60.562 47.826 0.00 0.00 0.00 3.53
45 46 3.814504 ATCCCTTTTGAGAGCTGGAAA 57.185 42.857 0.00 0.00 0.00 3.13
46 47 3.593442 TCCCTTTTGAGAGCTGGAAAA 57.407 42.857 0.00 0.00 0.00 2.29
47 48 3.909732 TCCCTTTTGAGAGCTGGAAAAA 58.090 40.909 0.00 0.00 0.00 1.94
48 49 3.891366 TCCCTTTTGAGAGCTGGAAAAAG 59.109 43.478 13.61 13.61 38.67 2.27
51 52 5.520376 CTTTTGAGAGCTGGAAAAAGGAA 57.480 39.130 13.06 0.00 36.45 3.36
52 53 5.906073 CTTTTGAGAGCTGGAAAAAGGAAA 58.094 37.500 13.06 0.00 36.45 3.13
53 54 5.520376 TTTGAGAGCTGGAAAAAGGAAAG 57.480 39.130 0.00 0.00 0.00 2.62
54 55 2.887152 TGAGAGCTGGAAAAAGGAAAGC 59.113 45.455 0.00 0.00 0.00 3.51
55 56 2.887152 GAGAGCTGGAAAAAGGAAAGCA 59.113 45.455 0.00 0.00 36.32 3.91
56 57 2.625314 AGAGCTGGAAAAAGGAAAGCAC 59.375 45.455 0.00 0.00 36.32 4.40
57 58 1.338020 AGCTGGAAAAAGGAAAGCACG 59.662 47.619 0.00 0.00 36.32 5.34
58 59 1.067060 GCTGGAAAAAGGAAAGCACGT 59.933 47.619 0.00 0.00 34.01 4.49
59 60 2.731217 CTGGAAAAAGGAAAGCACGTG 58.269 47.619 12.28 12.28 0.00 4.49
60 61 1.407258 TGGAAAAAGGAAAGCACGTGG 59.593 47.619 18.88 0.00 0.00 4.94
61 62 1.679153 GGAAAAAGGAAAGCACGTGGA 59.321 47.619 18.88 0.00 0.00 4.02
62 63 2.287608 GGAAAAAGGAAAGCACGTGGAG 60.288 50.000 18.88 0.00 0.00 3.86
63 64 2.341846 AAAAGGAAAGCACGTGGAGA 57.658 45.000 18.88 0.00 0.00 3.71
64 65 2.341846 AAAGGAAAGCACGTGGAGAA 57.658 45.000 18.88 0.00 0.00 2.87
65 66 2.568623 AAGGAAAGCACGTGGAGAAT 57.431 45.000 18.88 0.00 0.00 2.40
66 67 2.100605 AGGAAAGCACGTGGAGAATC 57.899 50.000 18.88 0.00 0.00 2.52
67 68 1.625818 AGGAAAGCACGTGGAGAATCT 59.374 47.619 18.88 0.97 33.73 2.40
68 69 2.832129 AGGAAAGCACGTGGAGAATCTA 59.168 45.455 18.88 0.00 33.73 1.98
69 70 3.260884 AGGAAAGCACGTGGAGAATCTAA 59.739 43.478 18.88 0.00 33.73 2.10
70 71 4.080863 AGGAAAGCACGTGGAGAATCTAAT 60.081 41.667 18.88 0.00 33.73 1.73
71 72 4.636206 GGAAAGCACGTGGAGAATCTAATT 59.364 41.667 18.88 0.00 33.73 1.40
72 73 5.123979 GGAAAGCACGTGGAGAATCTAATTT 59.876 40.000 18.88 0.00 33.73 1.82
73 74 5.551760 AAGCACGTGGAGAATCTAATTTG 57.448 39.130 18.88 0.00 33.73 2.32
74 75 3.941483 AGCACGTGGAGAATCTAATTTGG 59.059 43.478 18.88 0.00 33.73 3.28
75 76 3.065371 GCACGTGGAGAATCTAATTTGGG 59.935 47.826 18.88 0.00 33.73 4.12
76 77 4.513442 CACGTGGAGAATCTAATTTGGGA 58.487 43.478 7.95 0.00 33.73 4.37
77 78 4.572389 CACGTGGAGAATCTAATTTGGGAG 59.428 45.833 7.95 0.00 33.73 4.30
78 79 4.469945 ACGTGGAGAATCTAATTTGGGAGA 59.530 41.667 0.00 0.00 33.73 3.71
79 80 5.045869 ACGTGGAGAATCTAATTTGGGAGAA 60.046 40.000 0.00 0.00 33.73 2.87
80 81 5.294552 CGTGGAGAATCTAATTTGGGAGAAC 59.705 44.000 0.00 0.00 33.73 3.01
81 82 6.180472 GTGGAGAATCTAATTTGGGAGAACA 58.820 40.000 0.00 0.00 33.73 3.18
82 83 6.830838 GTGGAGAATCTAATTTGGGAGAACAT 59.169 38.462 0.00 0.00 33.73 2.71
83 84 6.830324 TGGAGAATCTAATTTGGGAGAACATG 59.170 38.462 0.00 0.00 33.73 3.21
84 85 7.056635 GGAGAATCTAATTTGGGAGAACATGA 58.943 38.462 0.00 0.00 33.73 3.07
85 86 7.723172 GGAGAATCTAATTTGGGAGAACATGAT 59.277 37.037 0.00 0.00 33.73 2.45
86 87 9.129532 GAGAATCTAATTTGGGAGAACATGATT 57.870 33.333 0.00 0.00 0.00 2.57
87 88 9.484806 AGAATCTAATTTGGGAGAACATGATTT 57.515 29.630 0.00 0.00 0.00 2.17
89 90 9.880157 AATCTAATTTGGGAGAACATGATTTTG 57.120 29.630 0.00 0.00 0.00 2.44
90 91 7.839907 TCTAATTTGGGAGAACATGATTTTGG 58.160 34.615 0.00 0.00 0.00 3.28
91 92 6.438186 AATTTGGGAGAACATGATTTTGGT 57.562 33.333 0.00 0.00 0.00 3.67
92 93 4.870123 TTGGGAGAACATGATTTTGGTG 57.130 40.909 0.00 0.00 0.00 4.17
93 94 3.164268 TGGGAGAACATGATTTTGGTGG 58.836 45.455 0.00 0.00 0.00 4.61
94 95 3.165071 GGGAGAACATGATTTTGGTGGT 58.835 45.455 0.00 0.00 0.00 4.16
95 96 3.056607 GGGAGAACATGATTTTGGTGGTG 60.057 47.826 0.00 0.00 0.00 4.17
96 97 3.573967 GGAGAACATGATTTTGGTGGTGT 59.426 43.478 0.00 0.00 0.00 4.16
97 98 4.039124 GGAGAACATGATTTTGGTGGTGTT 59.961 41.667 0.00 0.00 32.98 3.32
98 99 5.453198 GGAGAACATGATTTTGGTGGTGTTT 60.453 40.000 0.00 0.00 30.70 2.83
99 100 5.358922 AGAACATGATTTTGGTGGTGTTTG 58.641 37.500 0.00 0.00 30.70 2.93
100 101 4.070630 ACATGATTTTGGTGGTGTTTGG 57.929 40.909 0.00 0.00 0.00 3.28
101 102 3.454082 ACATGATTTTGGTGGTGTTTGGT 59.546 39.130 0.00 0.00 0.00 3.67
102 103 4.080638 ACATGATTTTGGTGGTGTTTGGTT 60.081 37.500 0.00 0.00 0.00 3.67
103 104 4.130286 TGATTTTGGTGGTGTTTGGTTC 57.870 40.909 0.00 0.00 0.00 3.62
104 105 3.772025 TGATTTTGGTGGTGTTTGGTTCT 59.228 39.130 0.00 0.00 0.00 3.01
105 106 3.878160 TTTTGGTGGTGTTTGGTTCTC 57.122 42.857 0.00 0.00 0.00 2.87
106 107 2.818751 TTGGTGGTGTTTGGTTCTCT 57.181 45.000 0.00 0.00 0.00 3.10
107 108 3.935818 TTGGTGGTGTTTGGTTCTCTA 57.064 42.857 0.00 0.00 0.00 2.43
108 109 3.485463 TGGTGGTGTTTGGTTCTCTAG 57.515 47.619 0.00 0.00 0.00 2.43
109 110 2.775384 TGGTGGTGTTTGGTTCTCTAGT 59.225 45.455 0.00 0.00 0.00 2.57
110 111 3.181458 TGGTGGTGTTTGGTTCTCTAGTC 60.181 47.826 0.00 0.00 0.00 2.59
111 112 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
112 113 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
113 114 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
114 115 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
115 116 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
116 117 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
117 118 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
149 150 4.615513 TCCCTGGGACTTTTTGAAAAAGA 58.384 39.130 30.55 12.07 0.00 2.52
150 151 4.404394 TCCCTGGGACTTTTTGAAAAAGAC 59.596 41.667 30.55 24.86 0.00 3.01
151 152 4.405680 CCCTGGGACTTTTTGAAAAAGACT 59.594 41.667 30.55 13.94 0.00 3.24
152 153 5.451937 CCCTGGGACTTTTTGAAAAAGACTC 60.452 44.000 30.55 25.34 0.00 3.36
153 154 5.360999 CCTGGGACTTTTTGAAAAAGACTCT 59.639 40.000 30.55 12.96 0.00 3.24
154 155 6.451064 TGGGACTTTTTGAAAAAGACTCTC 57.549 37.500 30.55 20.65 0.00 3.20
155 156 5.949354 TGGGACTTTTTGAAAAAGACTCTCA 59.051 36.000 30.55 22.55 0.00 3.27
156 157 6.435904 TGGGACTTTTTGAAAAAGACTCTCAA 59.564 34.615 30.55 11.11 0.00 3.02
157 158 6.975197 GGGACTTTTTGAAAAAGACTCTCAAG 59.025 38.462 30.55 7.82 31.11 3.02
158 159 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
159 160 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
160 161 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
161 162 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
162 163 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
163 164 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
164 165 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
165 166 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
166 167 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
167 168 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
168 169 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
169 170 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
170 171 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
171 172 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
172 173 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
173 174 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
174 175 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
175 176 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
176 177 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
177 178 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
178 179 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
179 180 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
180 181 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
181 182 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
182 183 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
183 184 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
184 185 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
185 186 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
186 187 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
198 199 7.609760 CTTTTAGCAAAAAGTCCCAAAAAGT 57.390 32.000 3.06 0.00 44.36 2.66
199 200 7.603963 TTTTAGCAAAAAGTCCCAAAAAGTC 57.396 32.000 0.00 0.00 31.04 3.01
200 201 4.137116 AGCAAAAAGTCCCAAAAAGTCC 57.863 40.909 0.00 0.00 0.00 3.85
201 202 3.118408 AGCAAAAAGTCCCAAAAAGTCCC 60.118 43.478 0.00 0.00 0.00 4.46
202 203 3.369997 GCAAAAAGTCCCAAAAAGTCCCA 60.370 43.478 0.00 0.00 0.00 4.37
203 204 4.188462 CAAAAAGTCCCAAAAAGTCCCAC 58.812 43.478 0.00 0.00 0.00 4.61
204 205 2.082140 AAGTCCCAAAAAGTCCCACC 57.918 50.000 0.00 0.00 0.00 4.61
205 206 0.187606 AGTCCCAAAAAGTCCCACCC 59.812 55.000 0.00 0.00 0.00 4.61
206 207 0.187606 GTCCCAAAAAGTCCCACCCT 59.812 55.000 0.00 0.00 0.00 4.34
207 208 0.187361 TCCCAAAAAGTCCCACCCTG 59.813 55.000 0.00 0.00 0.00 4.45
208 209 0.105709 CCCAAAAAGTCCCACCCTGT 60.106 55.000 0.00 0.00 0.00 4.00
209 210 1.691163 CCCAAAAAGTCCCACCCTGTT 60.691 52.381 0.00 0.00 0.00 3.16
210 211 2.115427 CCAAAAAGTCCCACCCTGTTT 58.885 47.619 0.00 0.00 0.00 2.83
211 212 2.158971 CCAAAAAGTCCCACCCTGTTTG 60.159 50.000 0.00 0.00 37.04 2.93
212 213 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
213 214 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
214 215 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
215 216 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
216 217 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
217 218 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
218 219 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
219 220 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
220 221 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
221 222 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
222 223 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
223 224 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
224 225 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
225 226 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
226 227 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
227 228 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
228 229 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
229 230 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
230 231 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
231 232 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
232 233 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
233 234 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
234 235 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
235 236 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
245 246 6.445357 GACTTTTTCTAGTCCCAACACAAA 57.555 37.500 0.00 0.00 38.88 2.83
246 247 6.844097 ACTTTTTCTAGTCCCAACACAAAA 57.156 33.333 0.00 0.00 0.00 2.44
247 248 7.234661 ACTTTTTCTAGTCCCAACACAAAAA 57.765 32.000 0.00 0.00 0.00 1.94
265 266 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
266 267 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
267 268 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.00 0.00 4.16
268 269 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
269 270 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
270 271 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
271 272 1.231641 CTGGAACCAAACACCCCCA 59.768 57.895 0.00 0.00 0.00 4.96
282 283 0.771755 ACACCCCCAAAGTCTTCCTC 59.228 55.000 0.00 0.00 0.00 3.71
283 284 1.068121 CACCCCCAAAGTCTTCCTCT 58.932 55.000 0.00 0.00 0.00 3.69
286 287 3.267031 CACCCCCAAAGTCTTCCTCTAAT 59.733 47.826 0.00 0.00 0.00 1.73
288 289 5.045140 CACCCCCAAAGTCTTCCTCTAATAA 60.045 44.000 0.00 0.00 0.00 1.40
290 291 6.122964 CCCCCAAAGTCTTCCTCTAATAAAG 58.877 44.000 0.00 0.00 0.00 1.85
313 314 3.068165 AGCAACTTGGCTTTTCAACTACC 59.932 43.478 0.00 0.00 42.71 3.18
315 316 3.306472 ACTTGGCTTTTCAACTACCCA 57.694 42.857 0.00 0.00 0.00 4.51
316 317 2.956333 ACTTGGCTTTTCAACTACCCAC 59.044 45.455 0.00 0.00 0.00 4.61
323 324 4.788521 GCTTTTCAACTACCCACTCGTTTG 60.789 45.833 0.00 0.00 0.00 2.93
324 325 1.873698 TCAACTACCCACTCGTTTGC 58.126 50.000 0.00 0.00 0.00 3.68
355 356 2.631160 TCAATGTGTTTCCACTCCGT 57.369 45.000 0.00 0.00 42.34 4.69
359 360 5.795972 TCAATGTGTTTCCACTCCGTATTA 58.204 37.500 0.00 0.00 42.34 0.98
364 365 5.872617 TGTGTTTCCACTCCGTATTAATGAG 59.127 40.000 0.00 0.00 42.34 2.90
370 371 4.369182 CACTCCGTATTAATGAGGTGTCC 58.631 47.826 12.71 0.00 0.00 4.02
371 372 4.028131 ACTCCGTATTAATGAGGTGTCCA 58.972 43.478 10.84 0.00 0.00 4.02
385 386 6.903516 TGAGGTGTCCATAATGAATCAGAAT 58.096 36.000 0.00 0.00 0.00 2.40
390 391 6.015940 GTGTCCATAATGAATCAGAATTCCCC 60.016 42.308 0.65 0.00 40.57 4.81
391 392 6.070656 GTCCATAATGAATCAGAATTCCCCA 58.929 40.000 0.65 0.00 40.57 4.96
393 394 5.047519 CCATAATGAATCAGAATTCCCCAGC 60.048 44.000 0.65 0.00 40.57 4.85
397 398 2.267174 ATCAGAATTCCCCAGCATCG 57.733 50.000 0.65 0.00 0.00 3.84
399 400 1.770658 TCAGAATTCCCCAGCATCGAT 59.229 47.619 0.65 0.00 0.00 3.59
400 401 2.972021 TCAGAATTCCCCAGCATCGATA 59.028 45.455 0.00 0.00 0.00 2.92
402 403 2.975489 AGAATTCCCCAGCATCGATAGT 59.025 45.455 0.00 0.00 37.40 2.12
403 404 4.021104 CAGAATTCCCCAGCATCGATAGTA 60.021 45.833 0.00 0.00 37.40 1.82
404 405 4.221703 AGAATTCCCCAGCATCGATAGTAG 59.778 45.833 0.00 0.00 37.40 2.57
405 406 2.677542 TCCCCAGCATCGATAGTAGT 57.322 50.000 0.00 0.00 37.40 2.73
406 407 3.801307 TCCCCAGCATCGATAGTAGTA 57.199 47.619 0.00 0.00 37.40 1.82
410 434 3.127895 CCCAGCATCGATAGTAGTAGAGC 59.872 52.174 0.00 0.00 37.40 4.09
414 438 5.639931 CAGCATCGATAGTAGTAGAGCAGTA 59.360 44.000 0.00 0.00 37.40 2.74
419 443 7.229581 TCGATAGTAGTAGAGCAGTATCTGA 57.770 40.000 0.66 0.00 32.76 3.27
426 450 6.403866 AGTAGAGCAGTATCTGATTTGGAG 57.596 41.667 0.00 0.00 32.44 3.86
427 451 5.896678 AGTAGAGCAGTATCTGATTTGGAGT 59.103 40.000 0.00 0.00 32.44 3.85
430 454 5.188555 AGAGCAGTATCTGATTTGGAGTTGA 59.811 40.000 0.00 0.00 32.44 3.18
443 467 4.755266 TGGAGTTGAATCCTAGTTAGGC 57.245 45.455 0.07 0.00 43.31 3.93
460 484 1.002087 AGGCGTGGCATAGGTATTAGC 59.998 52.381 0.00 0.00 0.00 3.09
467 491 3.056821 TGGCATAGGTATTAGCTACTGCG 60.057 47.826 19.40 7.85 45.42 5.18
515 539 4.141937 GCATGTCCTAAGTCATGGTGTCTA 60.142 45.833 7.15 0.00 39.18 2.59
518 542 5.023452 TGTCCTAAGTCATGGTGTCTACAT 58.977 41.667 0.00 0.00 0.00 2.29
524 548 3.251479 TCATGGTGTCTACATGAGCAC 57.749 47.619 0.00 2.56 46.99 4.40
555 579 4.320608 TTCAAGGAGTTTTGGCATGTTC 57.679 40.909 0.00 0.00 0.00 3.18
556 580 2.293122 TCAAGGAGTTTTGGCATGTTCG 59.707 45.455 0.00 0.00 0.00 3.95
557 581 1.981256 AGGAGTTTTGGCATGTTCGT 58.019 45.000 0.00 0.00 0.00 3.85
590 614 0.950116 GAGGTGCTAGTATACGGCGT 59.050 55.000 19.64 19.64 0.00 5.68
594 618 2.114825 GTGCTAGTATACGGCGTGTTC 58.885 52.381 24.86 14.45 0.00 3.18
605 629 4.368808 CGTGTTCTGTTGCCGCCG 62.369 66.667 0.00 0.00 0.00 6.46
607 631 4.243008 TGTTCTGTTGCCGCCGGA 62.243 61.111 7.68 0.00 0.00 5.14
609 633 3.936203 TTCTGTTGCCGCCGGACT 61.936 61.111 7.68 0.00 0.00 3.85
610 634 3.469863 TTCTGTTGCCGCCGGACTT 62.470 57.895 7.68 0.00 0.00 3.01
611 635 3.423154 CTGTTGCCGCCGGACTTC 61.423 66.667 7.68 0.00 0.00 3.01
614 638 3.936203 TTGCCGCCGGACTTCAGT 61.936 61.111 7.68 0.00 0.00 3.41
631 702 4.912395 TTGCCGGCTTGCCACCTT 62.912 61.111 29.70 0.00 0.00 3.50
708 780 4.563184 GCTCATCGACGTAAGATTCTGTTT 59.437 41.667 3.54 0.00 43.62 2.83
731 803 1.260561 GTTGAAGCGTGTCACAATCGT 59.739 47.619 3.42 0.00 0.00 3.73
816 888 9.402320 ACCACATGTGTAGTATGCAAATTAATA 57.598 29.630 23.79 0.00 27.52 0.98
994 1070 5.126067 CAATCCCTCATTCCGTAAACTGAT 58.874 41.667 0.00 0.00 0.00 2.90
1008 1084 0.036105 ACTGATCAGCCATGTCGCAA 60.036 50.000 22.83 0.00 0.00 4.85
1192 1271 1.065564 GGGAAGATCAGCTCAGCAAGT 60.066 52.381 0.00 0.00 0.00 3.16
1245 1324 4.742201 CACCTGCACCTCGTCGGG 62.742 72.222 0.00 0.00 36.97 5.14
1497 1576 0.107945 GGCAGGTCAAGAAGATCGCT 60.108 55.000 0.00 0.00 30.60 4.93
1500 1579 2.159170 GCAGGTCAAGAAGATCGCTACT 60.159 50.000 0.00 0.00 30.60 2.57
1588 1667 6.411630 ACCATCAATTTGAATTTGATTGCG 57.588 33.333 11.38 6.29 32.28 4.85
1593 3994 6.222389 TCAATTTGAATTTGATTGCGGTTCT 58.778 32.000 0.00 0.00 32.28 3.01
1594 3995 6.365789 TCAATTTGAATTTGATTGCGGTTCTC 59.634 34.615 0.00 0.00 32.28 2.87
1596 3997 4.844998 TGAATTTGATTGCGGTTCTCAA 57.155 36.364 0.00 0.00 0.00 3.02
1598 3999 5.595885 TGAATTTGATTGCGGTTCTCAAAA 58.404 33.333 1.57 0.00 40.94 2.44
1632 7041 4.603989 TGAATTTGATTGCACCATGTGT 57.396 36.364 0.00 0.00 35.75 3.72
1635 7044 7.401955 TGAATTTGATTGCACCATGTGTATA 57.598 32.000 0.00 0.00 35.75 1.47
1636 7045 8.009622 TGAATTTGATTGCACCATGTGTATAT 57.990 30.769 0.00 0.00 35.75 0.86
1689 7098 5.956068 TTAACTATTGTTGCATGTGCTCA 57.044 34.783 6.55 3.35 42.66 4.26
1701 7110 0.323816 TGTGCTCACCTCCTCGATCT 60.324 55.000 0.00 0.00 0.00 2.75
1721 7130 1.513858 ACAAGGTGAGGTTGGTGGTA 58.486 50.000 0.00 0.00 0.00 3.25
1797 7206 2.241880 AACGCCTTCACCAACGACG 61.242 57.895 0.00 0.00 0.00 5.12
1992 7401 1.073923 AGGTGAACAAGATGTGGGACC 59.926 52.381 0.00 0.00 0.00 4.46
2045 7454 4.379243 AGGCCCGCGTCAGAACAG 62.379 66.667 4.92 0.00 0.00 3.16
2166 7575 1.270465 ACAAACCGCACCTACCTACAC 60.270 52.381 0.00 0.00 0.00 2.90
2170 7579 1.753073 ACCGCACCTACCTACACATAC 59.247 52.381 0.00 0.00 0.00 2.39
2174 7583 4.498682 CCGCACCTACCTACACATACTAAC 60.499 50.000 0.00 0.00 0.00 2.34
2322 7746 4.564041 TGGTAACGACGCTAATTTGGTTA 58.436 39.130 0.00 0.00 42.51 2.85
2325 7749 4.394099 AACGACGCTAATTTGGTTACAC 57.606 40.909 0.00 0.00 0.00 2.90
2422 7846 9.687210 AAACTTTAAATAATTTGGAACGGAGAC 57.313 29.630 0.00 0.00 0.00 3.36
2598 8022 0.387202 CCGAGGTGAGGAGCACTATG 59.613 60.000 0.00 0.00 46.86 2.23
2739 8163 3.928375 CCATGGCTGACTGCAAAATTAAC 59.072 43.478 0.00 0.00 45.15 2.01
2856 8280 2.700773 GCGGTTCATGGAAGGTGGC 61.701 63.158 0.00 0.00 0.00 5.01
2904 8328 1.286248 ACGATTTCCCCTACTTGCCT 58.714 50.000 0.00 0.00 0.00 4.75
2962 8386 5.051816 ACTTTGCAATTGTGACCATTGAAG 58.948 37.500 12.91 10.31 0.00 3.02
3060 8490 5.010282 ACTGAATCATTTGGGGTAACAGTC 58.990 41.667 0.00 0.00 39.74 3.51
3095 8525 1.137282 GCTCCTACTTGTCCCTGTAGC 59.863 57.143 0.00 0.00 35.95 3.58
3108 8538 2.546795 CCCTGTAGCGCCAGAAGATTAG 60.547 54.545 14.35 0.00 34.23 1.73
3117 8547 6.403878 AGCGCCAGAAGATTAGTAAAAACTA 58.596 36.000 2.29 0.00 0.00 2.24
3136 8566 9.448587 AAAAACTAGTCCATATGACCTACCTAT 57.551 33.333 3.65 0.00 45.68 2.57
3219 8649 4.380841 AGCATTGCATCACAAATCGATT 57.619 36.364 11.91 4.39 42.86 3.34
3347 8777 6.903883 ACTCAACACTTACTTGTACAACTG 57.096 37.500 3.59 0.00 0.00 3.16
3388 8818 2.224606 CAACACTGCTCACTTCCACAT 58.775 47.619 0.00 0.00 0.00 3.21
3401 8831 7.523293 TCACTTCCACATGTCACAATTAAAT 57.477 32.000 0.00 0.00 0.00 1.40
3410 8840 7.066163 CACATGTCACAATTAAATAGCCTCTGA 59.934 37.037 0.00 0.00 0.00 3.27
3411 8841 6.985188 TGTCACAATTAAATAGCCTCTGAC 57.015 37.500 0.00 0.00 0.00 3.51
3446 8876 2.231235 CCTTCACCAAGGTAATTGCCAC 59.769 50.000 15.49 0.00 44.11 5.01
3469 8899 2.793288 TGAGATCATCAAGCTTGCCA 57.207 45.000 21.99 5.89 34.02 4.92
3470 8900 2.640184 TGAGATCATCAAGCTTGCCAG 58.360 47.619 21.99 13.11 34.02 4.85
3471 8901 3.262777 TGAGATCATCAAGCTTGCCAGC 61.263 50.000 21.99 10.08 38.64 4.85
3472 8902 6.751211 ATGAGATCATCAAGCTTGCCAGCT 62.751 45.833 21.99 14.58 45.70 4.24
3515 8945 1.398390 GGAAACATGCCTCACGTCATC 59.602 52.381 0.00 0.00 0.00 2.92
3517 8947 0.740868 AACATGCCTCACGTCATCGG 60.741 55.000 0.00 0.00 41.85 4.18
3521 8951 2.509336 CCTCACGTCATCGGGCAC 60.509 66.667 0.00 0.00 40.66 5.01
3535 8966 3.677648 GCACCACCTGCAGCCAAG 61.678 66.667 8.66 0.00 46.29 3.61
3539 8970 2.567497 CCACCTGCAGCCAAGGTTG 61.567 63.158 8.66 0.00 32.95 3.77
3653 9575 6.153510 TCTGAAGTGCTCTTAGTATGATGTGT 59.846 38.462 0.04 0.00 33.64 3.72
3682 9604 0.250295 ACACACCTCAATCCACACCG 60.250 55.000 0.00 0.00 0.00 4.94
3683 9605 0.250295 CACACCTCAATCCACACCGT 60.250 55.000 0.00 0.00 0.00 4.83
3684 9606 1.001520 CACACCTCAATCCACACCGTA 59.998 52.381 0.00 0.00 0.00 4.02
3685 9607 1.695242 ACACCTCAATCCACACCGTAA 59.305 47.619 0.00 0.00 0.00 3.18
3686 9608 2.304761 ACACCTCAATCCACACCGTAAT 59.695 45.455 0.00 0.00 0.00 1.89
3706 9628 6.904543 CGTAATTAATTCATTGCATCGTCACA 59.095 34.615 3.39 0.00 0.00 3.58
3717 9639 7.696035 TCATTGCATCGTCACAAACAATAATAC 59.304 33.333 0.00 0.00 0.00 1.89
3719 9641 6.903419 TGCATCGTCACAAACAATAATACAA 58.097 32.000 0.00 0.00 0.00 2.41
3720 9642 7.363431 TGCATCGTCACAAACAATAATACAAA 58.637 30.769 0.00 0.00 0.00 2.83
3759 9681 5.073311 GACTTAGTAGTCCTCACATTGCA 57.927 43.478 0.00 0.00 44.15 4.08
3769 9691 4.637534 GTCCTCACATTGCATAGTCATGTT 59.362 41.667 0.00 0.00 34.40 2.71
3780 9702 5.476254 TGCATAGTCATGTTGGAAAATGTCA 59.524 36.000 0.00 0.00 34.40 3.58
3793 9715 5.212934 GGAAAATGTCACTTCCGTTTTCTC 58.787 41.667 14.11 5.01 42.95 2.87
3807 9729 5.275494 CCGTTTTCTCGGTTTTACATTGTT 58.725 37.500 0.00 0.00 44.77 2.83
3811 9733 9.596677 CGTTTTCTCGGTTTTACATTGTTATTA 57.403 29.630 0.00 0.00 0.00 0.98
3825 9747 6.998673 ACATTGTTATTATACCCTCTCCAAGC 59.001 38.462 0.00 0.00 0.00 4.01
3897 9820 8.190784 CACAAGTAAACTCCTTTTTGTCTTGAT 58.809 33.333 15.47 4.88 36.44 2.57
3942 9865 3.923017 ATGCCTTGTTAAGTCTTGCAC 57.077 42.857 0.00 0.00 0.00 4.57
3944 9867 1.663161 GCCTTGTTAAGTCTTGCACGC 60.663 52.381 0.00 0.00 0.00 5.34
3954 9877 0.320421 TCTTGCACGCCTACTTCCAC 60.320 55.000 0.00 0.00 0.00 4.02
3965 9888 3.028850 CCTACTTCCACGACTCCCATAA 58.971 50.000 0.00 0.00 0.00 1.90
3982 9905 6.724893 CCCATAATTTACCTTGGGTTTAGG 57.275 41.667 5.68 0.00 43.25 2.69
4010 9933 2.039480 TGCAACATCAGAAGAGGCTCTT 59.961 45.455 28.94 28.94 39.87 2.85
4066 9989 5.437289 TTCAACATGATGTTCTTCACCAC 57.563 39.130 8.03 0.00 38.77 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.070981 TCCGCAAGATCTAGATCCAAATTCT 59.929 40.000 25.88 6.54 38.58 2.40
1 2 5.300752 TCCGCAAGATCTAGATCCAAATTC 58.699 41.667 25.88 10.75 38.58 2.17
2 3 5.296151 TCCGCAAGATCTAGATCCAAATT 57.704 39.130 25.88 12.98 38.58 1.82
3 4 4.963318 TCCGCAAGATCTAGATCCAAAT 57.037 40.909 25.88 7.66 38.58 2.32
6 7 3.259374 GGATTCCGCAAGATCTAGATCCA 59.741 47.826 25.88 5.33 38.58 3.41
7 8 3.368948 GGGATTCCGCAAGATCTAGATCC 60.369 52.174 25.88 12.20 38.58 3.36
8 9 3.513515 AGGGATTCCGCAAGATCTAGATC 59.486 47.826 22.92 22.92 43.02 2.75
9 10 3.515562 AGGGATTCCGCAAGATCTAGAT 58.484 45.455 4.47 4.47 43.02 1.98
10 11 2.964209 AGGGATTCCGCAAGATCTAGA 58.036 47.619 0.00 0.00 43.02 2.43
11 12 3.760580 AAGGGATTCCGCAAGATCTAG 57.239 47.619 0.00 0.00 43.02 2.43
12 13 4.080582 TCAAAAGGGATTCCGCAAGATCTA 60.081 41.667 0.00 0.00 43.02 1.98
13 14 3.019564 CAAAAGGGATTCCGCAAGATCT 58.980 45.455 0.00 0.00 43.02 2.75
14 15 3.016736 TCAAAAGGGATTCCGCAAGATC 58.983 45.455 0.00 0.00 43.02 2.75
15 16 3.019564 CTCAAAAGGGATTCCGCAAGAT 58.980 45.455 0.00 0.00 43.02 2.40
16 17 2.039746 TCTCAAAAGGGATTCCGCAAGA 59.960 45.455 0.00 0.00 43.02 3.02
17 18 2.421424 CTCTCAAAAGGGATTCCGCAAG 59.579 50.000 0.00 0.00 38.33 4.01
18 19 2.436417 CTCTCAAAAGGGATTCCGCAA 58.564 47.619 0.00 0.00 38.33 4.85
19 20 1.950484 GCTCTCAAAAGGGATTCCGCA 60.950 52.381 0.00 0.00 38.33 5.69
20 21 0.735471 GCTCTCAAAAGGGATTCCGC 59.265 55.000 0.00 0.00 38.33 5.54
21 22 2.012673 CAGCTCTCAAAAGGGATTCCG 58.987 52.381 0.00 0.00 38.33 4.30
22 23 2.025887 TCCAGCTCTCAAAAGGGATTCC 60.026 50.000 0.00 0.00 0.00 3.01
23 24 3.356529 TCCAGCTCTCAAAAGGGATTC 57.643 47.619 0.00 0.00 0.00 2.52
24 25 3.814504 TTCCAGCTCTCAAAAGGGATT 57.185 42.857 0.00 0.00 0.00 3.01
25 26 3.814504 TTTCCAGCTCTCAAAAGGGAT 57.185 42.857 0.00 0.00 0.00 3.85
26 27 3.593442 TTTTCCAGCTCTCAAAAGGGA 57.407 42.857 0.00 0.00 0.00 4.20
27 28 3.006217 CCTTTTTCCAGCTCTCAAAAGGG 59.994 47.826 21.96 15.29 46.28 3.95
28 29 4.248691 CCTTTTTCCAGCTCTCAAAAGG 57.751 45.455 18.72 18.72 45.41 3.11
29 30 5.520376 TTCCTTTTTCCAGCTCTCAAAAG 57.480 39.130 11.44 11.44 36.42 2.27
30 31 5.682212 GCTTTCCTTTTTCCAGCTCTCAAAA 60.682 40.000 0.00 0.00 0.00 2.44
31 32 4.202151 GCTTTCCTTTTTCCAGCTCTCAAA 60.202 41.667 0.00 0.00 0.00 2.69
32 33 3.319122 GCTTTCCTTTTTCCAGCTCTCAA 59.681 43.478 0.00 0.00 0.00 3.02
33 34 2.887152 GCTTTCCTTTTTCCAGCTCTCA 59.113 45.455 0.00 0.00 0.00 3.27
34 35 2.887152 TGCTTTCCTTTTTCCAGCTCTC 59.113 45.455 0.00 0.00 0.00 3.20
35 36 2.625314 GTGCTTTCCTTTTTCCAGCTCT 59.375 45.455 0.00 0.00 0.00 4.09
36 37 2.605580 CGTGCTTTCCTTTTTCCAGCTC 60.606 50.000 0.00 0.00 0.00 4.09
37 38 1.338020 CGTGCTTTCCTTTTTCCAGCT 59.662 47.619 0.00 0.00 0.00 4.24
38 39 1.067060 ACGTGCTTTCCTTTTTCCAGC 59.933 47.619 0.00 0.00 0.00 4.85
39 40 2.543653 CCACGTGCTTTCCTTTTTCCAG 60.544 50.000 10.91 0.00 0.00 3.86
40 41 1.407258 CCACGTGCTTTCCTTTTTCCA 59.593 47.619 10.91 0.00 0.00 3.53
41 42 1.679153 TCCACGTGCTTTCCTTTTTCC 59.321 47.619 10.91 0.00 0.00 3.13
42 43 2.616842 TCTCCACGTGCTTTCCTTTTTC 59.383 45.455 10.91 0.00 0.00 2.29
43 44 2.650322 TCTCCACGTGCTTTCCTTTTT 58.350 42.857 10.91 0.00 0.00 1.94
44 45 2.341846 TCTCCACGTGCTTTCCTTTT 57.658 45.000 10.91 0.00 0.00 2.27
45 46 2.341846 TTCTCCACGTGCTTTCCTTT 57.658 45.000 10.91 0.00 0.00 3.11
46 47 2.039084 AGATTCTCCACGTGCTTTCCTT 59.961 45.455 10.91 0.00 0.00 3.36
47 48 1.625818 AGATTCTCCACGTGCTTTCCT 59.374 47.619 10.91 0.00 0.00 3.36
48 49 2.100605 AGATTCTCCACGTGCTTTCC 57.899 50.000 10.91 0.00 0.00 3.13
49 50 5.803020 AATTAGATTCTCCACGTGCTTTC 57.197 39.130 10.91 2.20 0.00 2.62
50 51 5.106157 CCAAATTAGATTCTCCACGTGCTTT 60.106 40.000 10.91 0.00 0.00 3.51
51 52 4.396166 CCAAATTAGATTCTCCACGTGCTT 59.604 41.667 10.91 0.00 0.00 3.91
52 53 3.941483 CCAAATTAGATTCTCCACGTGCT 59.059 43.478 10.91 2.97 0.00 4.40
53 54 3.065371 CCCAAATTAGATTCTCCACGTGC 59.935 47.826 10.91 0.00 0.00 5.34
54 55 4.513442 TCCCAAATTAGATTCTCCACGTG 58.487 43.478 9.08 9.08 0.00 4.49
55 56 4.469945 TCTCCCAAATTAGATTCTCCACGT 59.530 41.667 0.00 0.00 0.00 4.49
56 57 5.023533 TCTCCCAAATTAGATTCTCCACG 57.976 43.478 0.00 0.00 0.00 4.94
57 58 6.180472 TGTTCTCCCAAATTAGATTCTCCAC 58.820 40.000 0.00 0.00 0.00 4.02
58 59 6.387192 TGTTCTCCCAAATTAGATTCTCCA 57.613 37.500 0.00 0.00 0.00 3.86
59 60 7.056635 TCATGTTCTCCCAAATTAGATTCTCC 58.943 38.462 0.00 0.00 0.00 3.71
60 61 8.688747 ATCATGTTCTCCCAAATTAGATTCTC 57.311 34.615 0.00 0.00 0.00 2.87
61 62 9.484806 AAATCATGTTCTCCCAAATTAGATTCT 57.515 29.630 0.00 0.00 0.00 2.40
63 64 9.880157 CAAAATCATGTTCTCCCAAATTAGATT 57.120 29.630 0.00 0.00 0.00 2.40
64 65 8.480501 CCAAAATCATGTTCTCCCAAATTAGAT 58.519 33.333 0.00 0.00 0.00 1.98
65 66 7.454380 ACCAAAATCATGTTCTCCCAAATTAGA 59.546 33.333 0.00 0.00 0.00 2.10
66 67 7.546667 CACCAAAATCATGTTCTCCCAAATTAG 59.453 37.037 0.00 0.00 0.00 1.73
67 68 7.385267 CACCAAAATCATGTTCTCCCAAATTA 58.615 34.615 0.00 0.00 0.00 1.40
68 69 6.232692 CACCAAAATCATGTTCTCCCAAATT 58.767 36.000 0.00 0.00 0.00 1.82
69 70 5.280113 CCACCAAAATCATGTTCTCCCAAAT 60.280 40.000 0.00 0.00 0.00 2.32
70 71 4.040217 CCACCAAAATCATGTTCTCCCAAA 59.960 41.667 0.00 0.00 0.00 3.28
71 72 3.577848 CCACCAAAATCATGTTCTCCCAA 59.422 43.478 0.00 0.00 0.00 4.12
72 73 3.164268 CCACCAAAATCATGTTCTCCCA 58.836 45.455 0.00 0.00 0.00 4.37
73 74 3.056607 CACCACCAAAATCATGTTCTCCC 60.057 47.826 0.00 0.00 0.00 4.30
74 75 3.573967 ACACCACCAAAATCATGTTCTCC 59.426 43.478 0.00 0.00 0.00 3.71
75 76 4.853924 ACACCACCAAAATCATGTTCTC 57.146 40.909 0.00 0.00 0.00 2.87
76 77 5.358922 CAAACACCACCAAAATCATGTTCT 58.641 37.500 0.00 0.00 30.26 3.01
77 78 4.511082 CCAAACACCACCAAAATCATGTTC 59.489 41.667 0.00 0.00 30.26 3.18
78 79 4.080638 ACCAAACACCACCAAAATCATGTT 60.081 37.500 0.00 0.00 31.82 2.71
79 80 3.454082 ACCAAACACCACCAAAATCATGT 59.546 39.130 0.00 0.00 0.00 3.21
80 81 4.070630 ACCAAACACCACCAAAATCATG 57.929 40.909 0.00 0.00 0.00 3.07
81 82 4.408596 AGAACCAAACACCACCAAAATCAT 59.591 37.500 0.00 0.00 0.00 2.45
82 83 3.772025 AGAACCAAACACCACCAAAATCA 59.228 39.130 0.00 0.00 0.00 2.57
83 84 4.099419 AGAGAACCAAACACCACCAAAATC 59.901 41.667 0.00 0.00 0.00 2.17
84 85 4.030216 AGAGAACCAAACACCACCAAAAT 58.970 39.130 0.00 0.00 0.00 1.82
85 86 3.436243 AGAGAACCAAACACCACCAAAA 58.564 40.909 0.00 0.00 0.00 2.44
86 87 3.094484 AGAGAACCAAACACCACCAAA 57.906 42.857 0.00 0.00 0.00 3.28
87 88 2.818751 AGAGAACCAAACACCACCAA 57.181 45.000 0.00 0.00 0.00 3.67
88 89 2.775384 ACTAGAGAACCAAACACCACCA 59.225 45.455 0.00 0.00 0.00 4.17
89 90 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
90 91 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
91 92 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
92 93 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
93 94 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
94 95 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
95 96 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
127 128 4.404394 GTCTTTTTCAAAAAGTCCCAGGGA 59.596 41.667 19.82 3.01 0.00 4.20
128 129 4.405680 AGTCTTTTTCAAAAAGTCCCAGGG 59.594 41.667 19.82 0.00 0.00 4.45
129 130 5.360999 AGAGTCTTTTTCAAAAAGTCCCAGG 59.639 40.000 19.82 0.00 0.00 4.45
130 131 6.095440 TGAGAGTCTTTTTCAAAAAGTCCCAG 59.905 38.462 19.82 0.00 0.00 4.45
131 132 5.949354 TGAGAGTCTTTTTCAAAAAGTCCCA 59.051 36.000 19.82 7.68 0.00 4.37
132 133 6.451064 TGAGAGTCTTTTTCAAAAAGTCCC 57.549 37.500 19.82 7.71 0.00 4.46
133 134 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
134 135 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
135 136 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
136 137 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
137 138 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
138 139 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
139 140 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
140 141 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
141 142 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
142 143 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
143 144 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
144 145 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
145 146 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
146 147 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
147 148 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
148 149 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
149 150 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
150 151 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
151 152 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
152 153 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
153 154 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
154 155 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
155 156 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
156 157 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
157 158 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
158 159 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
159 160 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
160 161 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
161 162 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
162 163 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
163 164 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
175 176 6.596106 GGACTTTTTGGGACTTTTTGCTAAAA 59.404 34.615 5.93 5.93 34.77 1.52
176 177 6.110033 GGACTTTTTGGGACTTTTTGCTAAA 58.890 36.000 0.00 0.00 0.00 1.85
177 178 5.395879 GGGACTTTTTGGGACTTTTTGCTAA 60.396 40.000 0.00 0.00 0.00 3.09
178 179 4.100344 GGGACTTTTTGGGACTTTTTGCTA 59.900 41.667 0.00 0.00 0.00 3.49
179 180 3.118408 GGGACTTTTTGGGACTTTTTGCT 60.118 43.478 0.00 0.00 0.00 3.91
180 181 3.202906 GGGACTTTTTGGGACTTTTTGC 58.797 45.455 0.00 0.00 0.00 3.68
181 182 4.188462 GTGGGACTTTTTGGGACTTTTTG 58.812 43.478 0.00 0.00 0.00 2.44
182 183 3.199071 GGTGGGACTTTTTGGGACTTTTT 59.801 43.478 0.00 0.00 0.00 1.94
183 184 2.769663 GGTGGGACTTTTTGGGACTTTT 59.230 45.455 0.00 0.00 0.00 2.27
184 185 2.394632 GGTGGGACTTTTTGGGACTTT 58.605 47.619 0.00 0.00 0.00 2.66
185 186 1.412505 GGGTGGGACTTTTTGGGACTT 60.413 52.381 0.00 0.00 0.00 3.01
186 187 0.187606 GGGTGGGACTTTTTGGGACT 59.812 55.000 0.00 0.00 0.00 3.85
187 188 0.187606 AGGGTGGGACTTTTTGGGAC 59.812 55.000 0.00 0.00 0.00 4.46
188 189 0.187361 CAGGGTGGGACTTTTTGGGA 59.813 55.000 0.00 0.00 0.00 4.37
189 190 0.105709 ACAGGGTGGGACTTTTTGGG 60.106 55.000 0.00 0.00 0.00 4.12
190 191 1.788229 AACAGGGTGGGACTTTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
191 192 2.158971 CCAAACAGGGTGGGACTTTTTG 60.159 50.000 0.00 0.00 36.11 2.44
192 193 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
193 194 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
194 195 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
195 196 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
196 197 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
197 198 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
198 199 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
199 200 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
200 201 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
201 202 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
202 203 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
203 204 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
204 205 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
205 206 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
206 207 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
207 208 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
208 209 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
209 210 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
210 211 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
211 212 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
212 213 6.483385 GACTAGAAAAAGTCCCTAGCAAAC 57.517 41.667 0.00 0.00 40.06 2.93
222 223 6.445357 TTTGTGTTGGGACTAGAAAAAGTC 57.555 37.500 0.00 0.00 44.31 3.01
223 224 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
244 245 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
245 246 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
246 247 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
247 248 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
248 249 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
249 250 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
250 251 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
251 252 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
252 253 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
253 254 0.397816 TTGGGGGTGTTTGGTTCCAG 60.398 55.000 0.00 0.00 0.00 3.86
254 255 0.042731 TTTGGGGGTGTTTGGTTCCA 59.957 50.000 0.00 0.00 0.00 3.53
255 256 0.756294 CTTTGGGGGTGTTTGGTTCC 59.244 55.000 0.00 0.00 0.00 3.62
256 257 1.411246 GACTTTGGGGGTGTTTGGTTC 59.589 52.381 0.00 0.00 0.00 3.62
257 258 1.007842 AGACTTTGGGGGTGTTTGGTT 59.992 47.619 0.00 0.00 0.00 3.67
258 259 0.634465 AGACTTTGGGGGTGTTTGGT 59.366 50.000 0.00 0.00 0.00 3.67
259 260 1.686587 GAAGACTTTGGGGGTGTTTGG 59.313 52.381 0.00 0.00 0.00 3.28
260 261 1.686587 GGAAGACTTTGGGGGTGTTTG 59.313 52.381 0.00 0.00 0.00 2.93
261 262 1.573857 AGGAAGACTTTGGGGGTGTTT 59.426 47.619 0.00 0.00 0.00 2.83
262 263 1.145119 GAGGAAGACTTTGGGGGTGTT 59.855 52.381 0.00 0.00 0.00 3.32
263 264 0.771755 GAGGAAGACTTTGGGGGTGT 59.228 55.000 0.00 0.00 0.00 4.16
264 265 1.068121 AGAGGAAGACTTTGGGGGTG 58.932 55.000 0.00 0.00 0.00 4.61
265 266 2.735259 TAGAGGAAGACTTTGGGGGT 57.265 50.000 0.00 0.00 0.00 4.95
266 267 5.710409 TTATTAGAGGAAGACTTTGGGGG 57.290 43.478 0.00 0.00 0.00 5.40
267 268 6.958767 TCTTTATTAGAGGAAGACTTTGGGG 58.041 40.000 0.00 0.00 0.00 4.96
268 269 7.798114 TGCTCTTTATTAGAGGAAGACTTTGGG 60.798 40.741 4.16 0.00 46.88 4.12
269 270 7.106239 TGCTCTTTATTAGAGGAAGACTTTGG 58.894 38.462 4.16 0.00 46.88 3.28
282 283 7.370383 TGAAAAGCCAAGTTGCTCTTTATTAG 58.630 34.615 16.56 0.00 41.80 1.73
283 284 7.283625 TGAAAAGCCAAGTTGCTCTTTATTA 57.716 32.000 16.56 7.85 41.80 0.98
286 287 5.127031 AGTTGAAAAGCCAAGTTGCTCTTTA 59.873 36.000 16.56 5.18 41.80 1.85
288 289 3.448660 AGTTGAAAAGCCAAGTTGCTCTT 59.551 39.130 0.00 0.18 41.80 2.85
290 291 3.443099 AGTTGAAAAGCCAAGTTGCTC 57.557 42.857 0.00 0.00 41.80 4.26
300 301 2.490991 ACGAGTGGGTAGTTGAAAAGC 58.509 47.619 0.00 0.00 0.00 3.51
313 314 2.927004 TGCTTAGGCAAACGAGTGG 58.073 52.632 0.00 0.00 46.36 4.00
323 324 3.077359 ACACATTGAAGAGTGCTTAGGC 58.923 45.455 1.15 0.00 39.30 3.93
324 325 5.335191 GGAAACACATTGAAGAGTGCTTAGG 60.335 44.000 1.15 0.00 39.30 2.69
359 360 6.903516 TCTGATTCATTATGGACACCTCATT 58.096 36.000 0.00 0.00 0.00 2.57
364 365 6.015940 GGGAATTCTGATTCATTATGGACACC 60.016 42.308 5.23 0.00 42.82 4.16
370 371 5.537295 TGCTGGGGAATTCTGATTCATTATG 59.463 40.000 5.23 0.00 42.82 1.90
371 372 5.708544 TGCTGGGGAATTCTGATTCATTAT 58.291 37.500 5.23 0.00 42.82 1.28
385 386 2.958818 ACTACTATCGATGCTGGGGAA 58.041 47.619 8.54 0.00 0.00 3.97
390 391 4.454161 ACTGCTCTACTACTATCGATGCTG 59.546 45.833 8.54 6.09 0.00 4.41
391 392 4.647611 ACTGCTCTACTACTATCGATGCT 58.352 43.478 8.54 0.00 0.00 3.79
393 394 7.762159 TCAGATACTGCTCTACTACTATCGATG 59.238 40.741 8.54 0.52 0.00 3.84
399 400 8.218488 TCCAAATCAGATACTGCTCTACTACTA 58.782 37.037 0.00 0.00 0.00 1.82
400 401 7.063593 TCCAAATCAGATACTGCTCTACTACT 58.936 38.462 0.00 0.00 0.00 2.57
402 403 7.063593 ACTCCAAATCAGATACTGCTCTACTA 58.936 38.462 0.00 0.00 0.00 1.82
403 404 5.896678 ACTCCAAATCAGATACTGCTCTACT 59.103 40.000 0.00 0.00 0.00 2.57
404 405 6.155475 ACTCCAAATCAGATACTGCTCTAC 57.845 41.667 0.00 0.00 0.00 2.59
405 406 6.381133 TCAACTCCAAATCAGATACTGCTCTA 59.619 38.462 0.00 0.00 0.00 2.43
406 407 5.188555 TCAACTCCAAATCAGATACTGCTCT 59.811 40.000 0.00 0.00 0.00 4.09
410 434 7.052873 AGGATTCAACTCCAAATCAGATACTG 58.947 38.462 0.00 0.00 37.81 2.74
414 438 7.205515 ACTAGGATTCAACTCCAAATCAGAT 57.794 36.000 0.00 0.00 37.81 2.90
419 443 6.122964 GCCTAACTAGGATTCAACTCCAAAT 58.877 40.000 6.98 0.00 46.63 2.32
426 450 3.195661 CCACGCCTAACTAGGATTCAAC 58.804 50.000 6.98 0.00 46.63 3.18
427 451 2.419574 GCCACGCCTAACTAGGATTCAA 60.420 50.000 6.98 0.00 46.63 2.69
430 454 1.200519 TGCCACGCCTAACTAGGATT 58.799 50.000 6.98 0.00 46.63 3.01
443 467 4.486090 CAGTAGCTAATACCTATGCCACG 58.514 47.826 0.00 0.00 34.67 4.94
460 484 0.744414 CACCACCAATCCCGCAGTAG 60.744 60.000 0.00 0.00 0.00 2.57
467 491 2.040544 CACTCGCACCACCAATCCC 61.041 63.158 0.00 0.00 0.00 3.85
515 539 3.245016 TGAAATCTCCCAAGTGCTCATGT 60.245 43.478 0.00 0.00 0.00 3.21
518 542 3.415212 CTTGAAATCTCCCAAGTGCTCA 58.585 45.455 0.00 0.00 36.08 4.26
524 548 5.279156 CCAAAACTCCTTGAAATCTCCCAAG 60.279 44.000 0.00 0.00 39.43 3.61
556 580 4.243270 AGCACCTCAACTTCGTTATGTAC 58.757 43.478 0.00 0.00 0.00 2.90
557 581 4.530710 AGCACCTCAACTTCGTTATGTA 57.469 40.909 0.00 0.00 0.00 2.29
574 598 2.114825 GAACACGCCGTATACTAGCAC 58.885 52.381 13.28 0.00 0.00 4.40
590 614 4.243008 TCCGGCGGCAACAGAACA 62.243 61.111 23.83 0.00 0.00 3.18
594 618 3.423154 GAAGTCCGGCGGCAACAG 61.423 66.667 23.83 0.00 0.00 3.16
605 629 1.600916 AAGCCGGCAACTGAAGTCC 60.601 57.895 31.54 0.00 0.00 3.85
607 631 2.555547 GCAAGCCGGCAACTGAAGT 61.556 57.895 31.54 0.76 0.00 3.01
609 633 3.294493 GGCAAGCCGGCAACTGAA 61.294 61.111 31.54 0.00 40.76 3.02
630 701 2.920912 ACCGCCCGTCTCTTGGAA 60.921 61.111 0.00 0.00 0.00 3.53
631 702 3.691342 CACCGCCCGTCTCTTGGA 61.691 66.667 0.00 0.00 0.00 3.53
632 703 4.003788 ACACCGCCCGTCTCTTGG 62.004 66.667 0.00 0.00 0.00 3.61
633 704 2.738521 CACACCGCCCGTCTCTTG 60.739 66.667 0.00 0.00 0.00 3.02
708 780 3.183574 CGATTGTGACACGCTTCAACTAA 59.816 43.478 0.22 0.00 0.00 2.24
731 803 1.305802 ACCTCACACGATAGCCCCA 60.306 57.895 0.00 0.00 42.67 4.96
816 888 2.581354 GACACCATGAGAGGCGCT 59.419 61.111 7.64 0.00 0.00 5.92
919 991 6.929625 TCAGCTGGCTTATTTATAGCTAGAG 58.070 40.000 15.13 4.21 46.54 2.43
994 1070 2.327343 GCACTTGCGACATGGCTGA 61.327 57.895 0.00 0.00 0.00 4.26
1008 1084 1.222936 GTGGAGGCTATGCTGCACT 59.777 57.895 3.57 0.00 38.58 4.40
1062 1138 3.011517 ACTAGGGCTGCCTGTGGG 61.012 66.667 19.68 7.30 0.00 4.61
1192 1271 1.845627 CTGCTGGGAGGAGAAGGCAA 61.846 60.000 0.00 0.00 35.49 4.52
1497 1576 0.038599 TGGTGAGGAGGTGCGTAGTA 59.961 55.000 0.00 0.00 0.00 1.82
1500 1579 1.116536 TGTTGGTGAGGAGGTGCGTA 61.117 55.000 0.00 0.00 0.00 4.42
1604 4775 9.233649 ACATGGTGCAATCAAATTCATTTTATT 57.766 25.926 0.00 0.00 0.00 1.40
1606 4777 7.660617 ACACATGGTGCAATCAAATTCATTTTA 59.339 29.630 0.00 0.00 36.98 1.52
1622 4793 7.065803 GGTGGACAATATATATACACATGGTGC 59.934 40.741 12.25 0.89 36.98 5.01
1625 4796 8.539544 TGAGGTGGACAATATATATACACATGG 58.460 37.037 12.25 0.00 0.00 3.66
1681 7090 0.749649 GATCGAGGAGGTGAGCACAT 59.250 55.000 2.75 0.00 0.00 3.21
1683 7092 1.335496 GTAGATCGAGGAGGTGAGCAC 59.665 57.143 0.00 0.00 0.00 4.40
1701 7110 1.513858 ACCACCAACCTCACCTTGTA 58.486 50.000 0.00 0.00 0.00 2.41
1721 7130 3.483869 GCCTCCCGGATCTTGGCT 61.484 66.667 0.73 0.00 40.36 4.75
1811 7220 0.882927 TGAAAAGCTTCCCGGACACG 60.883 55.000 0.73 0.00 40.55 4.49
1820 7229 3.384668 GCCTTGTTTCCTGAAAAGCTTC 58.615 45.455 0.00 0.00 31.33 3.86
2016 7425 4.143333 GGGCCTGCTTGCATGCTG 62.143 66.667 23.31 21.73 0.00 4.41
2072 7481 3.077229 TGTTGAATGGAAAGCAACACG 57.923 42.857 0.00 0.00 44.73 4.49
2153 7562 4.096984 ACGTTAGTATGTGTAGGTAGGTGC 59.903 45.833 0.00 0.00 0.00 5.01
2290 7714 9.485206 AATTAGCGTCGTTACCAAATATATTCT 57.515 29.630 0.00 0.00 0.00 2.40
2301 7725 4.388469 TGTAACCAAATTAGCGTCGTTACC 59.612 41.667 0.00 0.00 36.38 2.85
2309 7733 9.997482 AACAATATTAGTGTAACCAAATTAGCG 57.003 29.630 0.00 0.00 37.80 4.26
2598 8022 4.158579 GTGATCATTTCTTTCCCCTTGGAC 59.841 45.833 0.00 0.00 41.57 4.02
2619 8043 0.171231 TGCTCAGATCGTCTTCGGTG 59.829 55.000 0.00 0.00 37.69 4.94
2739 8163 1.335964 CCTGATGGTATCGTGTAGCCG 60.336 57.143 0.00 0.00 0.00 5.52
2856 8280 0.742281 AGTCCATAGTTGCAGCGCTG 60.742 55.000 32.83 32.83 0.00 5.18
2904 8328 2.434331 CTCCGCCCAGTCCCAAAA 59.566 61.111 0.00 0.00 0.00 2.44
2962 8386 5.049818 GGTACATGAGATTTGCTAGCATGAC 60.050 44.000 20.13 12.32 38.82 3.06
3060 8490 0.391793 GGAGCTTCTCCTTTCGGTGG 60.392 60.000 5.65 0.00 46.41 4.61
3081 8511 2.172483 CTGGCGCTACAGGGACAAGT 62.172 60.000 7.64 0.00 45.77 3.16
3095 8525 7.010275 GGACTAGTTTTTACTAATCTTCTGGCG 59.990 40.741 0.00 0.00 0.00 5.69
3108 8538 8.702819 AGGTAGGTCATATGGACTAGTTTTTAC 58.297 37.037 2.13 0.00 46.16 2.01
3189 8619 7.593875 TTTGTGATGCAATGCTTTATTTACC 57.406 32.000 6.82 0.00 36.89 2.85
3245 8675 5.105513 TCCAAATGAGCGTTCATGTACTAGA 60.106 40.000 15.91 4.83 43.20 2.43
3319 8749 8.823818 GTTGTACAAGTAAGTGTTGAGTATTGT 58.176 33.333 8.98 0.00 34.33 2.71
3335 8765 8.756486 ATTACTAAAAACCCAGTTGTACAAGT 57.244 30.769 8.98 9.66 0.00 3.16
3373 8803 1.802960 GTGACATGTGGAAGTGAGCAG 59.197 52.381 1.15 0.00 0.00 4.24
3378 8808 7.485913 GCTATTTAATTGTGACATGTGGAAGTG 59.514 37.037 1.15 0.00 0.00 3.16
3388 8818 5.580691 CGTCAGAGGCTATTTAATTGTGACA 59.419 40.000 5.79 0.00 33.01 3.58
3410 8840 1.203001 TGAAGGAAAATGGAAGCCCGT 60.203 47.619 0.00 0.00 34.29 5.28
3411 8841 1.202348 GTGAAGGAAAATGGAAGCCCG 59.798 52.381 0.00 0.00 34.29 6.13
3475 8905 6.800072 TTCCAATACAAGGTCCAACTTTTT 57.200 33.333 0.00 0.00 0.00 1.94
3476 8906 6.155393 TGTTTCCAATACAAGGTCCAACTTTT 59.845 34.615 0.00 0.00 0.00 2.27
3477 8907 5.659079 TGTTTCCAATACAAGGTCCAACTTT 59.341 36.000 0.00 0.00 0.00 2.66
3478 8908 5.205056 TGTTTCCAATACAAGGTCCAACTT 58.795 37.500 0.00 0.00 0.00 2.66
3479 8909 4.798882 TGTTTCCAATACAAGGTCCAACT 58.201 39.130 0.00 0.00 0.00 3.16
3480 8910 5.469479 CATGTTTCCAATACAAGGTCCAAC 58.531 41.667 0.00 0.00 0.00 3.77
3483 8913 3.119137 GGCATGTTTCCAATACAAGGTCC 60.119 47.826 0.00 0.00 0.00 4.46
3490 8920 2.747446 ACGTGAGGCATGTTTCCAATAC 59.253 45.455 0.00 0.00 28.11 1.89
3521 8951 2.203538 AACCTTGGCTGCAGGTGG 60.204 61.111 17.12 5.69 44.48 4.61
3535 8966 1.792632 GCGTATGCGTTAAAGCCAACC 60.793 52.381 10.95 0.89 40.81 3.77
3584 9017 1.045350 TCTGCGAGAATGAGAGGGGG 61.045 60.000 0.00 0.00 0.00 5.40
3585 9018 0.388659 CTCTGCGAGAATGAGAGGGG 59.611 60.000 0.00 0.00 31.30 4.79
3586 9019 0.249405 GCTCTGCGAGAATGAGAGGG 60.249 60.000 9.32 0.00 34.87 4.30
3587 9020 0.249405 GGCTCTGCGAGAATGAGAGG 60.249 60.000 9.32 0.00 34.87 3.69
3682 9604 8.613613 TTGTGACGATGCAATGAATTAATTAC 57.386 30.769 0.00 0.00 0.00 1.89
3683 9605 9.071221 GTTTGTGACGATGCAATGAATTAATTA 57.929 29.630 0.00 0.00 0.00 1.40
3684 9606 7.598118 TGTTTGTGACGATGCAATGAATTAATT 59.402 29.630 0.00 0.00 0.00 1.40
3685 9607 7.089538 TGTTTGTGACGATGCAATGAATTAAT 58.910 30.769 0.00 0.00 0.00 1.40
3686 9608 6.442112 TGTTTGTGACGATGCAATGAATTAA 58.558 32.000 0.00 0.00 0.00 1.40
3741 9663 5.891551 TGACTATGCAATGTGAGGACTACTA 59.108 40.000 0.00 0.00 0.00 1.82
3758 9680 7.149569 AGTGACATTTTCCAACATGACTATG 57.850 36.000 0.00 0.00 40.24 2.23
3759 9681 7.094205 GGAAGTGACATTTTCCAACATGACTAT 60.094 37.037 13.81 0.00 41.97 2.12
3793 9715 9.333724 AGAGGGTATAATAACAATGTAAAACCG 57.666 33.333 0.00 0.00 0.00 4.44
3802 9724 7.293535 AGAGCTTGGAGAGGGTATAATAACAAT 59.706 37.037 0.00 0.00 0.00 2.71
3807 9729 6.046168 AGAGAGAGCTTGGAGAGGGTATAATA 59.954 42.308 0.00 0.00 0.00 0.98
3811 9733 2.517980 AGAGAGAGCTTGGAGAGGGTAT 59.482 50.000 0.00 0.00 0.00 2.73
3825 9747 9.251792 GAATGATTGCATGCTATATAGAGAGAG 57.748 37.037 20.33 0.00 34.26 3.20
3857 9780 3.737559 ACTTGTGGCAATCCAGGATAA 57.262 42.857 1.02 0.00 44.48 1.75
3859 9782 3.737559 TTACTTGTGGCAATCCAGGAT 57.262 42.857 0.00 0.00 44.48 3.24
3942 9865 1.139095 GGAGTCGTGGAAGTAGGCG 59.861 63.158 0.00 0.00 0.00 5.52
3944 9867 1.486211 ATGGGAGTCGTGGAAGTAGG 58.514 55.000 0.00 0.00 0.00 3.18
3965 9888 4.120946 TGTGCCTAAACCCAAGGTAAAT 57.879 40.909 0.00 0.00 33.12 1.40
4035 9958 9.635520 GAAGAACATCATGTTGAATGAAGAATT 57.364 29.630 8.05 0.00 41.28 2.17
4066 9989 2.416901 GGTAGGCCGACACTAGAGG 58.583 63.158 18.37 0.00 0.00 3.69
4085 10008 3.725740 CACTCAGCAATTCACGTTCAAAC 59.274 43.478 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.