Multiple sequence alignment - TraesCS2D01G044200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G044200 chr2D 100.000 4157 0 0 1 4157 15992928 15988772 0.000000e+00 7677.0
1 TraesCS2D01G044200 chr2D 82.942 1876 298 13 1416 3282 15935428 15933566 0.000000e+00 1672.0
2 TraesCS2D01G044200 chr2D 80.806 422 50 10 3458 3850 15965110 15964691 6.750000e-78 302.0
3 TraesCS2D01G044200 chr2D 89.262 149 15 1 3702 3850 15965846 15965699 7.100000e-43 185.0
4 TraesCS2D01G044200 chr2D 78.341 217 41 4 376 589 554304633 554304846 7.250000e-28 135.0
5 TraesCS2D01G044200 chr2D 79.670 182 31 4 398 578 508732167 508732343 4.360000e-25 126.0
6 TraesCS2D01G044200 chr2A 96.076 2064 51 15 1411 3448 17871024 17868965 0.000000e+00 3336.0
7 TraesCS2D01G044200 chr2A 92.358 458 32 2 757 1213 17871973 17871518 0.000000e+00 649.0
8 TraesCS2D01G044200 chr2A 89.087 504 21 10 3457 3927 17866724 17866222 2.770000e-166 595.0
9 TraesCS2D01G044200 chr2A 80.000 420 53 10 3460 3850 17856311 17855894 8.800000e-72 281.0
10 TraesCS2D01G044200 chr2A 97.297 74 2 0 4084 4157 17865804 17865731 4.360000e-25 126.0
11 TraesCS2D01G044200 chr2A 100.000 42 0 0 3998 4039 17865850 17865809 1.240000e-10 78.7
12 TraesCS2D01G044200 chr2A 100.000 35 0 0 3965 3999 17866045 17866011 9.650000e-07 65.8
13 TraesCS2D01G044200 chr2B 94.471 1917 96 8 1408 3317 28175429 28173516 0.000000e+00 2944.0
14 TraesCS2D01G044200 chr2B 83.631 1790 281 5 1499 3282 28095177 28093394 0.000000e+00 1672.0
15 TraesCS2D01G044200 chr2B 89.030 711 61 9 693 1392 28176312 28175608 0.000000e+00 865.0
16 TraesCS2D01G044200 chr2B 94.843 446 19 3 3628 4073 28173245 28172804 0.000000e+00 693.0
17 TraesCS2D01G044200 chr2B 94.059 101 6 0 594 694 629108529 629108629 2.000000e-33 154.0
18 TraesCS2D01G044200 chr2B 86.364 110 6 2 3348 3448 28173437 28173328 1.220000e-20 111.0
19 TraesCS2D01G044200 chr2B 95.161 62 3 0 28 89 28177215 28177154 9.510000e-17 99.0
20 TraesCS2D01G044200 chr2B 82.609 69 12 0 398 466 201950043 201949975 1.250000e-05 62.1
21 TraesCS2D01G044200 chr5D 83.250 1594 256 8 1506 3089 6822536 6820944 0.000000e+00 1454.0
22 TraesCS2D01G044200 chr5A 83.145 1590 253 12 1506 3083 3086901 3088487 0.000000e+00 1437.0
23 TraesCS2D01G044200 chr5B 82.884 1595 260 10 1506 3089 862685 861093 0.000000e+00 1421.0
24 TraesCS2D01G044200 chr5B 81.448 1644 291 11 1501 3131 44140300 44141942 0.000000e+00 1334.0
25 TraesCS2D01G044200 chr5B 94.000 100 6 0 596 695 272169003 272169102 7.200000e-33 152.0
26 TraesCS2D01G044200 chr4A 80.312 1605 272 28 1500 3078 657071329 657072915 0.000000e+00 1173.0
27 TraesCS2D01G044200 chr4A 93.333 105 7 0 598 702 631569193 631569297 5.560000e-34 156.0
28 TraesCS2D01G044200 chr4A 85.455 55 8 0 494 548 736819750 736819696 1.610000e-04 58.4
29 TraesCS2D01G044200 chr7A 82.556 1158 188 12 1934 3083 47511682 47512833 0.000000e+00 1007.0
30 TraesCS2D01G044200 chr7A 93.269 104 7 0 595 698 629780018 629780121 2.000000e-33 154.0
31 TraesCS2D01G044200 chr7A 94.898 98 5 0 598 695 666188169 666188266 2.000000e-33 154.0
32 TraesCS2D01G044200 chr3D 92.381 105 8 0 590 694 290583811 290583915 2.590000e-32 150.0
33 TraesCS2D01G044200 chr3D 91.743 109 7 2 590 697 462197518 462197411 2.590000e-32 150.0
34 TraesCS2D01G044200 chr3D 88.793 116 12 1 596 711 511299115 511299001 1.560000e-29 141.0
35 TraesCS2D01G044200 chrUn 88.793 116 12 1 596 711 338411894 338411780 1.560000e-29 141.0
36 TraesCS2D01G044200 chr1D 84.946 93 14 0 374 466 307664813 307664905 1.230000e-15 95.3
37 TraesCS2D01G044200 chr4D 76.506 166 35 3 373 536 360463556 360463393 2.060000e-13 87.9
38 TraesCS2D01G044200 chr7B 77.027 148 26 5 434 579 17851739 17851880 1.240000e-10 78.7
39 TraesCS2D01G044200 chr7B 89.796 49 4 1 378 425 725025869 725025917 1.250000e-05 62.1
40 TraesCS2D01G044200 chr7D 100.000 29 0 0 3248 3276 163386185 163386213 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G044200 chr2D 15988772 15992928 4156 True 7677.000000 7677 100.0000 1 4157 1 chr2D.!!$R2 4156
1 TraesCS2D01G044200 chr2D 15933566 15935428 1862 True 1672.000000 1672 82.9420 1416 3282 1 chr2D.!!$R1 1866
2 TraesCS2D01G044200 chr2D 15964691 15965846 1155 True 243.500000 302 85.0340 3458 3850 2 chr2D.!!$R3 392
3 TraesCS2D01G044200 chr2A 17865731 17871973 6242 True 808.416667 3336 95.8030 757 4157 6 chr2A.!!$R2 3400
4 TraesCS2D01G044200 chr2B 28093394 28095177 1783 True 1672.000000 1672 83.6310 1499 3282 1 chr2B.!!$R1 1783
5 TraesCS2D01G044200 chr2B 28172804 28177215 4411 True 942.400000 2944 91.9738 28 4073 5 chr2B.!!$R3 4045
6 TraesCS2D01G044200 chr5D 6820944 6822536 1592 True 1454.000000 1454 83.2500 1506 3089 1 chr5D.!!$R1 1583
7 TraesCS2D01G044200 chr5A 3086901 3088487 1586 False 1437.000000 1437 83.1450 1506 3083 1 chr5A.!!$F1 1577
8 TraesCS2D01G044200 chr5B 861093 862685 1592 True 1421.000000 1421 82.8840 1506 3089 1 chr5B.!!$R1 1583
9 TraesCS2D01G044200 chr5B 44140300 44141942 1642 False 1334.000000 1334 81.4480 1501 3131 1 chr5B.!!$F1 1630
10 TraesCS2D01G044200 chr4A 657071329 657072915 1586 False 1173.000000 1173 80.3120 1500 3078 1 chr4A.!!$F2 1578
11 TraesCS2D01G044200 chr7A 47511682 47512833 1151 False 1007.000000 1007 82.5560 1934 3083 1 chr7A.!!$F1 1149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1206 0.178995 CCTCTCCTCCCCGTACTACC 60.179 65.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3172 3771 7.977818 TGTCCATTAATCTACCAATCTATGCT 58.022 34.615 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.400529 TGGAAGAAAAGGGAAAAGCAAC 57.599 40.909 0.00 0.00 0.00 4.17
22 23 3.181480 TGGAAGAAAAGGGAAAAGCAACG 60.181 43.478 0.00 0.00 0.00 4.10
24 25 2.384828 AGAAAAGGGAAAAGCAACGGT 58.615 42.857 0.00 0.00 0.00 4.83
26 27 1.480789 AAAGGGAAAAGCAACGGTGT 58.519 45.000 0.66 0.00 0.00 4.16
64 65 0.663153 AAGAAAGCAACGGTGTCTGC 59.337 50.000 0.66 0.00 38.91 4.26
65 66 1.166531 AGAAAGCAACGGTGTCTGCC 61.167 55.000 0.66 0.00 39.47 4.85
98 126 3.829948 CAAGGTGTCTCAATTGCATCAC 58.170 45.455 0.00 8.97 0.00 3.06
101 129 1.131126 GTGTCTCAATTGCATCACCCG 59.869 52.381 0.00 0.00 0.00 5.28
120 148 5.176223 CACCCGTATATTAAGCGTAGTTTGG 59.824 44.000 0.00 0.00 30.33 3.28
123 151 4.151157 CGTATATTAAGCGTAGTTTGGCCC 59.849 45.833 0.00 0.00 30.33 5.80
132 160 0.404040 TAGTTTGGCCCAACCTGAGG 59.596 55.000 15.79 0.00 40.22 3.86
135 163 1.943730 TTTGGCCCAACCTGAGGTGT 61.944 55.000 4.15 0.00 40.22 4.16
136 164 1.943730 TTGGCCCAACCTGAGGTGTT 61.944 55.000 4.15 0.00 40.22 3.32
138 166 1.456287 GCCCAACCTGAGGTGTTCT 59.544 57.895 4.15 0.00 35.34 3.01
146 174 5.817816 CCAACCTGAGGTGTTCTATGATTAC 59.182 44.000 4.15 0.00 35.34 1.89
148 176 5.978814 ACCTGAGGTGTTCTATGATTACAC 58.021 41.667 1.77 0.00 41.01 2.90
152 180 8.424918 CCTGAGGTGTTCTATGATTACACTATT 58.575 37.037 0.00 0.00 41.37 1.73
177 205 9.590451 TTAATAAGACCTACCACTAAATCAACG 57.410 33.333 0.00 0.00 0.00 4.10
178 206 5.733620 AAGACCTACCACTAAATCAACGA 57.266 39.130 0.00 0.00 0.00 3.85
180 208 5.721232 AGACCTACCACTAAATCAACGAAG 58.279 41.667 0.00 0.00 0.00 3.79
186 214 4.039973 ACCACTAAATCAACGAAGGAGACA 59.960 41.667 0.00 0.00 0.00 3.41
189 217 6.149474 CCACTAAATCAACGAAGGAGACAATT 59.851 38.462 0.00 0.00 0.00 2.32
190 218 7.237173 CACTAAATCAACGAAGGAGACAATTC 58.763 38.462 0.00 0.00 0.00 2.17
193 221 3.067106 TCAACGAAGGAGACAATTCAGC 58.933 45.455 0.00 0.00 0.00 4.26
195 223 4.021456 TCAACGAAGGAGACAATTCAGCTA 60.021 41.667 0.00 0.00 0.00 3.32
196 224 4.116747 ACGAAGGAGACAATTCAGCTAG 57.883 45.455 0.00 0.00 0.00 3.42
201 229 3.055530 AGGAGACAATTCAGCTAGTGTGG 60.056 47.826 0.00 0.00 0.00 4.17
202 230 3.055819 GGAGACAATTCAGCTAGTGTGGA 60.056 47.826 0.00 0.00 0.00 4.02
206 234 3.244078 ACAATTCAGCTAGTGTGGACGAA 60.244 43.478 0.00 0.00 0.00 3.85
207 235 2.433868 TTCAGCTAGTGTGGACGAAC 57.566 50.000 0.00 0.00 0.00 3.95
209 237 1.961394 TCAGCTAGTGTGGACGAACTT 59.039 47.619 0.00 0.00 0.00 2.66
210 238 2.061773 CAGCTAGTGTGGACGAACTTG 58.938 52.381 0.00 0.00 0.00 3.16
214 242 2.169832 AGTGTGGACGAACTTGATGG 57.830 50.000 0.00 0.00 0.00 3.51
217 245 1.202758 TGTGGACGAACTTGATGGCTT 60.203 47.619 0.00 0.00 0.00 4.35
219 247 3.270877 GTGGACGAACTTGATGGCTTAT 58.729 45.455 0.00 0.00 0.00 1.73
228 256 8.952278 ACGAACTTGATGGCTTATTATAACAAA 58.048 29.630 0.00 0.00 0.00 2.83
252 280 5.796350 AAAAAGTATCCTACACGTGATGC 57.204 39.130 25.01 8.77 0.00 3.91
254 282 4.737855 AAGTATCCTACACGTGATGCTT 57.262 40.909 25.01 16.47 38.54 3.91
256 284 3.954904 AGTATCCTACACGTGATGCTTCT 59.045 43.478 25.01 9.02 31.01 2.85
258 286 2.447443 TCCTACACGTGATGCTTCTCT 58.553 47.619 25.01 0.00 0.00 3.10
260 288 3.258372 TCCTACACGTGATGCTTCTCTTT 59.742 43.478 25.01 0.00 0.00 2.52
261 289 3.614616 CCTACACGTGATGCTTCTCTTTC 59.385 47.826 25.01 0.00 0.00 2.62
262 290 3.393089 ACACGTGATGCTTCTCTTTCT 57.607 42.857 25.01 0.00 0.00 2.52
263 291 3.733337 ACACGTGATGCTTCTCTTTCTT 58.267 40.909 25.01 0.00 0.00 2.52
266 329 4.212004 CACGTGATGCTTCTCTTTCTTTCA 59.788 41.667 10.90 0.00 0.00 2.69
267 330 4.212214 ACGTGATGCTTCTCTTTCTTTCAC 59.788 41.667 0.88 0.00 0.00 3.18
269 332 5.614231 CGTGATGCTTCTCTTTCTTTCACAG 60.614 44.000 0.88 0.00 33.56 3.66
270 333 5.468072 GTGATGCTTCTCTTTCTTTCACAGA 59.532 40.000 0.88 0.00 34.01 3.41
276 339 8.314021 TGCTTCTCTTTCTTTCACAGATACATA 58.686 33.333 0.00 0.00 0.00 2.29
303 366 2.435410 GGTAACCCGGCGAACCTG 60.435 66.667 9.30 0.00 0.00 4.00
305 368 1.739196 GTAACCCGGCGAACCTGTC 60.739 63.158 9.30 0.00 0.00 3.51
306 369 2.946346 TAACCCGGCGAACCTGTCC 61.946 63.158 9.30 0.00 0.00 4.02
308 371 3.072468 CCCGGCGAACCTGTCCTA 61.072 66.667 9.30 0.00 0.00 2.94
309 372 2.652095 CCCGGCGAACCTGTCCTAA 61.652 63.158 9.30 0.00 0.00 2.69
310 373 1.294138 CCGGCGAACCTGTCCTAAA 59.706 57.895 9.30 0.00 0.00 1.85
311 374 0.320946 CCGGCGAACCTGTCCTAAAA 60.321 55.000 9.30 0.00 0.00 1.52
312 375 1.076332 CGGCGAACCTGTCCTAAAAG 58.924 55.000 0.00 0.00 0.00 2.27
313 376 1.607251 CGGCGAACCTGTCCTAAAAGT 60.607 52.381 0.00 0.00 0.00 2.66
314 377 2.501261 GGCGAACCTGTCCTAAAAGTT 58.499 47.619 0.00 0.00 0.00 2.66
316 379 3.135994 GCGAACCTGTCCTAAAAGTTGA 58.864 45.455 0.00 0.00 0.00 3.18
318 381 4.035909 GCGAACCTGTCCTAAAAGTTGAAA 59.964 41.667 0.00 0.00 0.00 2.69
319 382 5.449451 GCGAACCTGTCCTAAAAGTTGAAAA 60.449 40.000 0.00 0.00 0.00 2.29
332 395 2.312722 TTGAAAACACCGAACCGAGA 57.687 45.000 0.00 0.00 0.00 4.04
335 398 3.207778 TGAAAACACCGAACCGAGAAAT 58.792 40.909 0.00 0.00 0.00 2.17
336 399 4.378774 TGAAAACACCGAACCGAGAAATA 58.621 39.130 0.00 0.00 0.00 1.40
337 400 4.998672 TGAAAACACCGAACCGAGAAATAT 59.001 37.500 0.00 0.00 0.00 1.28
338 401 5.121142 TGAAAACACCGAACCGAGAAATATC 59.879 40.000 0.00 0.00 0.00 1.63
339 402 3.880047 ACACCGAACCGAGAAATATCA 57.120 42.857 0.00 0.00 0.00 2.15
340 403 4.196626 ACACCGAACCGAGAAATATCAA 57.803 40.909 0.00 0.00 0.00 2.57
341 404 4.181578 ACACCGAACCGAGAAATATCAAG 58.818 43.478 0.00 0.00 0.00 3.02
342 405 3.555956 CACCGAACCGAGAAATATCAAGG 59.444 47.826 0.00 0.00 0.00 3.61
345 408 3.871594 CGAACCGAGAAATATCAAGGCTT 59.128 43.478 0.00 0.00 0.00 4.35
346 409 4.332819 CGAACCGAGAAATATCAAGGCTTT 59.667 41.667 0.00 0.00 0.00 3.51
347 410 5.502544 CGAACCGAGAAATATCAAGGCTTTC 60.503 44.000 0.00 0.00 0.00 2.62
350 413 5.047847 CCGAGAAATATCAAGGCTTTCGTA 58.952 41.667 11.36 0.52 34.77 3.43
351 414 5.175856 CCGAGAAATATCAAGGCTTTCGTAG 59.824 44.000 11.36 0.00 34.77 3.51
352 415 5.977725 CGAGAAATATCAAGGCTTTCGTAGA 59.022 40.000 0.00 0.00 34.77 2.59
355 418 5.615925 AATATCAAGGCTTTCGTAGACCT 57.384 39.130 0.00 0.00 34.32 3.85
356 419 6.726490 AATATCAAGGCTTTCGTAGACCTA 57.274 37.500 0.00 0.00 34.32 3.08
357 420 6.726490 ATATCAAGGCTTTCGTAGACCTAA 57.274 37.500 0.00 0.00 34.32 2.69
358 421 4.184079 TCAAGGCTTTCGTAGACCTAAC 57.816 45.455 0.00 0.00 34.32 2.34
359 422 3.575256 TCAAGGCTTTCGTAGACCTAACA 59.425 43.478 0.00 0.00 34.32 2.41
361 424 4.820894 AGGCTTTCGTAGACCTAACATT 57.179 40.909 0.00 0.00 34.32 2.71
362 425 4.504858 AGGCTTTCGTAGACCTAACATTG 58.495 43.478 0.00 0.00 34.32 2.82
363 426 4.222145 AGGCTTTCGTAGACCTAACATTGA 59.778 41.667 0.00 0.00 34.32 2.57
364 427 5.104900 AGGCTTTCGTAGACCTAACATTGAT 60.105 40.000 0.00 0.00 34.32 2.57
365 428 5.006746 GGCTTTCGTAGACCTAACATTGATG 59.993 44.000 0.00 0.00 34.32 3.07
366 429 5.581085 GCTTTCGTAGACCTAACATTGATGT 59.419 40.000 0.00 0.00 38.74 3.06
368 431 7.591006 TTTCGTAGACCTAACATTGATGTTC 57.409 36.000 12.28 0.00 43.44 3.18
369 432 5.803461 TTCGTAGACCTAACATTGATGTTCG 59.197 40.000 12.28 6.96 43.44 3.95
370 433 7.602032 TTCGTAGACCTAACATTGATGTTCGC 61.602 42.308 12.28 2.43 43.44 4.70
379 442 5.075858 ACATTGATGTTCGCATTGGATTT 57.924 34.783 0.00 0.00 37.90 2.17
380 443 6.206395 ACATTGATGTTCGCATTGGATTTA 57.794 33.333 0.00 0.00 37.90 1.40
381 444 6.808829 ACATTGATGTTCGCATTGGATTTAT 58.191 32.000 0.00 0.00 37.90 1.40
384 447 7.754069 TTGATGTTCGCATTGGATTTATTTC 57.246 32.000 0.00 0.00 38.08 2.17
385 448 6.861144 TGATGTTCGCATTGGATTTATTTCA 58.139 32.000 0.00 0.00 38.08 2.69
386 449 6.974048 TGATGTTCGCATTGGATTTATTTCAG 59.026 34.615 0.00 0.00 38.08 3.02
388 451 5.184864 TGTTCGCATTGGATTTATTTCAGGT 59.815 36.000 0.00 0.00 0.00 4.00
389 452 5.499139 TCGCATTGGATTTATTTCAGGTC 57.501 39.130 0.00 0.00 0.00 3.85
390 453 5.192927 TCGCATTGGATTTATTTCAGGTCT 58.807 37.500 0.00 0.00 0.00 3.85
391 454 5.652014 TCGCATTGGATTTATTTCAGGTCTT 59.348 36.000 0.00 0.00 0.00 3.01
392 455 6.152661 TCGCATTGGATTTATTTCAGGTCTTT 59.847 34.615 0.00 0.00 0.00 2.52
393 456 6.473455 CGCATTGGATTTATTTCAGGTCTTTC 59.527 38.462 0.00 0.00 0.00 2.62
394 457 6.473455 GCATTGGATTTATTTCAGGTCTTTCG 59.527 38.462 0.00 0.00 0.00 3.46
396 459 5.566469 TGGATTTATTTCAGGTCTTTCGGT 58.434 37.500 0.00 0.00 0.00 4.69
397 460 5.414454 TGGATTTATTTCAGGTCTTTCGGTG 59.586 40.000 0.00 0.00 0.00 4.94
400 463 6.494893 TTTATTTCAGGTCTTTCGGTGATG 57.505 37.500 0.00 0.00 0.00 3.07
401 464 3.485463 TTTCAGGTCTTTCGGTGATGT 57.515 42.857 0.00 0.00 0.00 3.06
403 466 1.691976 TCAGGTCTTTCGGTGATGTGT 59.308 47.619 0.00 0.00 0.00 3.72
405 468 1.416401 AGGTCTTTCGGTGATGTGTGT 59.584 47.619 0.00 0.00 0.00 3.72
406 469 2.158813 AGGTCTTTCGGTGATGTGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
410 473 2.613026 TTCGGTGATGTGTGTTCAGT 57.387 45.000 0.00 0.00 0.00 3.41
411 474 1.864565 TCGGTGATGTGTGTTCAGTG 58.135 50.000 0.00 0.00 0.00 3.66
412 475 1.410882 TCGGTGATGTGTGTTCAGTGA 59.589 47.619 0.00 0.00 0.00 3.41
413 476 2.159028 TCGGTGATGTGTGTTCAGTGAA 60.159 45.455 0.08 0.08 0.00 3.18
415 478 3.303329 CGGTGATGTGTGTTCAGTGAAAG 60.303 47.826 7.25 0.00 0.00 2.62
416 479 3.003689 GGTGATGTGTGTTCAGTGAAAGG 59.996 47.826 7.25 0.00 0.00 3.11
417 480 3.876914 GTGATGTGTGTTCAGTGAAAGGA 59.123 43.478 7.25 0.00 0.00 3.36
419 482 3.904800 TGTGTGTTCAGTGAAAGGAGA 57.095 42.857 7.25 0.00 0.00 3.71
420 483 3.531538 TGTGTGTTCAGTGAAAGGAGAC 58.468 45.455 7.25 4.38 0.00 3.36
422 485 2.167693 TGTGTTCAGTGAAAGGAGACGT 59.832 45.455 7.25 0.00 0.00 4.34
423 486 3.195661 GTGTTCAGTGAAAGGAGACGTT 58.804 45.455 7.25 0.00 33.60 3.99
425 488 2.801111 GTTCAGTGAAAGGAGACGTTCC 59.199 50.000 7.25 8.26 46.58 3.62
440 503 2.268298 CGTTCCCGTTGACTATGAAGG 58.732 52.381 0.00 0.00 0.00 3.46
441 504 2.007608 GTTCCCGTTGACTATGAAGGC 58.992 52.381 0.00 0.00 0.00 4.35
443 506 1.837439 TCCCGTTGACTATGAAGGCAT 59.163 47.619 0.00 0.00 41.63 4.40
444 507 3.035363 TCCCGTTGACTATGAAGGCATA 58.965 45.455 0.00 0.00 41.63 3.14
445 508 3.646162 TCCCGTTGACTATGAAGGCATAT 59.354 43.478 0.00 0.00 41.63 1.78
446 509 4.836175 TCCCGTTGACTATGAAGGCATATA 59.164 41.667 0.00 0.00 41.63 0.86
447 510 5.483937 TCCCGTTGACTATGAAGGCATATAT 59.516 40.000 0.00 0.00 41.63 0.86
448 511 5.582269 CCCGTTGACTATGAAGGCATATATG 59.418 44.000 8.45 8.45 41.63 1.78
449 512 5.582269 CCGTTGACTATGAAGGCATATATGG 59.418 44.000 14.51 0.00 41.63 2.74
462 525 6.199937 GGCATATATGGCGATTTCTTCAAT 57.800 37.500 21.95 0.00 43.58 2.57
463 526 6.261118 GGCATATATGGCGATTTCTTCAATC 58.739 40.000 21.95 0.00 43.58 2.67
464 527 6.094603 GGCATATATGGCGATTTCTTCAATCT 59.905 38.462 21.95 0.00 43.58 2.40
465 528 7.185453 GCATATATGGCGATTTCTTCAATCTC 58.815 38.462 14.51 0.00 39.50 2.75
466 529 7.678218 GCATATATGGCGATTTCTTCAATCTCC 60.678 40.741 14.51 0.00 44.34 3.71
470 533 5.254339 GGCGATTTCTTCAATCTCCAAAT 57.746 39.130 0.00 0.00 43.76 2.32
471 534 5.039333 GGCGATTTCTTCAATCTCCAAATG 58.961 41.667 0.00 0.00 43.76 2.32
472 535 4.501921 GCGATTTCTTCAATCTCCAAATGC 59.498 41.667 0.00 0.00 39.50 3.56
473 536 5.678107 GCGATTTCTTCAATCTCCAAATGCT 60.678 40.000 0.00 0.00 39.50 3.79
474 537 5.742453 CGATTTCTTCAATCTCCAAATGCTG 59.258 40.000 0.00 0.00 39.50 4.41
475 538 4.445452 TTCTTCAATCTCCAAATGCTGC 57.555 40.909 0.00 0.00 0.00 5.25
476 539 2.421073 TCTTCAATCTCCAAATGCTGCG 59.579 45.455 0.00 0.00 0.00 5.18
477 540 0.452987 TCAATCTCCAAATGCTGCGC 59.547 50.000 0.00 0.00 0.00 6.09
483 546 4.842091 CAAATGCTGCGCCGGCTC 62.842 66.667 26.68 18.89 40.82 4.70
489 552 3.869272 CTGCGCCGGCTCAATGTC 61.869 66.667 26.68 5.39 40.82 3.06
495 558 2.202932 CGGCTCAATGTCCCGGAG 60.203 66.667 0.73 0.00 38.42 4.63
497 560 1.832912 GGCTCAATGTCCCGGAGAT 59.167 57.895 0.73 0.00 0.00 2.75
498 561 0.533755 GGCTCAATGTCCCGGAGATG 60.534 60.000 0.73 0.00 0.00 2.90
499 562 1.162800 GCTCAATGTCCCGGAGATGC 61.163 60.000 0.73 0.00 0.00 3.91
500 563 0.467384 CTCAATGTCCCGGAGATGCT 59.533 55.000 0.73 0.00 0.00 3.79
501 564 0.465705 TCAATGTCCCGGAGATGCTC 59.534 55.000 0.73 0.00 0.00 4.26
503 566 1.135094 AATGTCCCGGAGATGCTCAT 58.865 50.000 0.73 0.00 31.08 2.90
504 567 2.015456 ATGTCCCGGAGATGCTCATA 57.985 50.000 0.73 0.00 31.08 2.15
505 568 1.332195 TGTCCCGGAGATGCTCATAG 58.668 55.000 0.73 0.00 31.08 2.23
506 569 0.605589 GTCCCGGAGATGCTCATAGG 59.394 60.000 0.73 0.00 31.08 2.57
507 570 0.542938 TCCCGGAGATGCTCATAGGG 60.543 60.000 0.73 12.62 40.21 3.53
508 571 0.542938 CCCGGAGATGCTCATAGGGA 60.543 60.000 0.73 0.00 40.82 4.20
509 572 1.566211 CCGGAGATGCTCATAGGGAT 58.434 55.000 0.00 0.00 31.08 3.85
510 573 2.624293 CCCGGAGATGCTCATAGGGATA 60.624 54.545 0.73 0.00 40.82 2.59
511 574 2.692557 CCGGAGATGCTCATAGGGATAG 59.307 54.545 0.00 0.00 31.08 2.08
512 575 2.692557 CGGAGATGCTCATAGGGATAGG 59.307 54.545 0.00 0.00 31.08 2.57
513 576 3.718723 GGAGATGCTCATAGGGATAGGT 58.281 50.000 0.00 0.00 31.08 3.08
514 577 4.100373 GGAGATGCTCATAGGGATAGGTT 58.900 47.826 0.00 0.00 31.08 3.50
515 578 5.273208 GGAGATGCTCATAGGGATAGGTTA 58.727 45.833 0.00 0.00 31.08 2.85
516 579 5.902431 GGAGATGCTCATAGGGATAGGTTAT 59.098 44.000 0.00 0.00 31.08 1.89
517 580 6.183360 GGAGATGCTCATAGGGATAGGTTATG 60.183 46.154 0.00 0.00 31.08 1.90
518 581 4.826274 TGCTCATAGGGATAGGTTATGC 57.174 45.455 0.00 0.00 0.00 3.14
519 582 4.167319 TGCTCATAGGGATAGGTTATGCA 58.833 43.478 0.00 0.00 0.00 3.96
520 583 4.784838 TGCTCATAGGGATAGGTTATGCAT 59.215 41.667 3.79 3.79 0.00 3.96
521 584 5.121811 GCTCATAGGGATAGGTTATGCATG 58.878 45.833 10.16 0.00 0.00 4.06
523 586 2.479566 AGGGATAGGTTATGCATGCG 57.520 50.000 14.09 0.00 0.00 4.73
534 597 2.645628 GCATGCGTGCGTTCATCG 60.646 61.111 16.43 0.00 42.28 3.84
535 598 2.021793 CATGCGTGCGTTCATCGG 59.978 61.111 0.00 0.00 40.26 4.18
536 599 2.125713 ATGCGTGCGTTCATCGGA 60.126 55.556 0.00 0.00 40.26 4.55
537 600 2.167219 ATGCGTGCGTTCATCGGAG 61.167 57.895 0.00 0.00 41.14 4.63
538 601 2.809601 GCGTGCGTTCATCGGAGT 60.810 61.111 0.00 0.00 41.14 3.85
539 602 3.071459 GCGTGCGTTCATCGGAGTG 62.071 63.158 0.00 0.00 41.14 3.51
540 603 1.443702 CGTGCGTTCATCGGAGTGA 60.444 57.895 0.00 0.00 41.14 3.41
541 604 1.006825 CGTGCGTTCATCGGAGTGAA 61.007 55.000 0.00 0.00 41.14 3.18
542 605 1.359848 GTGCGTTCATCGGAGTGAAT 58.640 50.000 6.27 0.00 41.14 2.57
543 606 1.061131 GTGCGTTCATCGGAGTGAATG 59.939 52.381 13.44 13.44 44.27 2.67
547 610 3.060272 GCGTTCATCGGAGTGAATGTATG 60.060 47.826 16.51 0.00 43.66 2.39
549 612 4.026558 CGTTCATCGGAGTGAATGTATGTG 60.027 45.833 11.18 0.00 39.99 3.21
551 614 3.118811 TCATCGGAGTGAATGTATGTGCA 60.119 43.478 0.00 0.00 0.00 4.57
552 615 3.541996 TCGGAGTGAATGTATGTGCAT 57.458 42.857 0.00 0.00 0.00 3.96
553 616 4.664150 TCGGAGTGAATGTATGTGCATA 57.336 40.909 0.00 0.00 0.00 3.14
555 618 4.990426 TCGGAGTGAATGTATGTGCATATG 59.010 41.667 6.16 0.00 0.00 1.78
556 619 4.751600 CGGAGTGAATGTATGTGCATATGT 59.248 41.667 6.16 0.00 0.00 2.29
557 620 5.333568 CGGAGTGAATGTATGTGCATATGTG 60.334 44.000 6.16 0.00 0.00 3.21
558 621 5.528690 GGAGTGAATGTATGTGCATATGTGT 59.471 40.000 6.16 0.00 0.00 3.72
559 622 6.367686 AGTGAATGTATGTGCATATGTGTG 57.632 37.500 6.16 0.00 0.00 3.82
560 623 6.114767 AGTGAATGTATGTGCATATGTGTGA 58.885 36.000 6.16 0.00 0.00 3.58
561 624 6.259387 AGTGAATGTATGTGCATATGTGTGAG 59.741 38.462 6.16 0.00 0.00 3.51
562 625 5.007921 TGAATGTATGTGCATATGTGTGAGC 59.992 40.000 6.16 0.00 0.00 4.26
563 626 2.865551 TGTATGTGCATATGTGTGAGCG 59.134 45.455 6.16 0.00 0.00 5.03
564 627 2.028420 ATGTGCATATGTGTGAGCGT 57.972 45.000 4.29 0.00 0.00 5.07
567 630 2.002586 GTGCATATGTGTGAGCGTCTT 58.997 47.619 4.29 0.00 0.00 3.01
568 631 2.029728 GTGCATATGTGTGAGCGTCTTC 59.970 50.000 4.29 0.00 0.00 2.87
569 632 1.256376 GCATATGTGTGAGCGTCTTCG 59.744 52.381 4.29 0.00 40.37 3.79
570 633 2.530177 CATATGTGTGAGCGTCTTCGT 58.470 47.619 0.00 0.00 39.49 3.85
571 634 2.257974 TATGTGTGAGCGTCTTCGTC 57.742 50.000 0.00 0.00 39.49 4.20
572 635 0.598562 ATGTGTGAGCGTCTTCGTCT 59.401 50.000 0.00 0.00 39.49 4.18
573 636 0.317854 TGTGTGAGCGTCTTCGTCTG 60.318 55.000 0.00 0.00 39.49 3.51
574 637 0.317938 GTGTGAGCGTCTTCGTCTGT 60.318 55.000 0.00 0.00 39.49 3.41
575 638 1.069432 GTGTGAGCGTCTTCGTCTGTA 60.069 52.381 0.00 0.00 39.49 2.74
576 639 1.069432 TGTGAGCGTCTTCGTCTGTAC 60.069 52.381 0.00 0.00 39.49 2.90
577 640 1.197264 GTGAGCGTCTTCGTCTGTACT 59.803 52.381 0.00 0.00 39.49 2.73
578 641 2.414481 GTGAGCGTCTTCGTCTGTACTA 59.586 50.000 0.00 0.00 39.49 1.82
579 642 3.069289 TGAGCGTCTTCGTCTGTACTAA 58.931 45.455 0.00 0.00 39.49 2.24
580 643 3.124806 TGAGCGTCTTCGTCTGTACTAAG 59.875 47.826 0.00 0.00 39.49 2.18
581 644 3.332919 AGCGTCTTCGTCTGTACTAAGA 58.667 45.455 0.00 0.00 35.65 2.10
582 645 3.750130 AGCGTCTTCGTCTGTACTAAGAA 59.250 43.478 0.00 0.00 38.65 2.52
583 646 4.214971 AGCGTCTTCGTCTGTACTAAGAAA 59.785 41.667 0.00 0.00 38.65 2.52
584 647 4.913924 GCGTCTTCGTCTGTACTAAGAAAA 59.086 41.667 0.00 0.00 38.65 2.29
585 648 5.400485 GCGTCTTCGTCTGTACTAAGAAAAA 59.600 40.000 0.00 0.00 38.65 1.94
609 672 3.838903 AGTTCTCAATTACTCCCTCCGTT 59.161 43.478 0.00 0.00 0.00 4.44
611 674 2.764572 TCTCAATTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
612 675 2.500098 CTCAATTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
613 676 2.907696 TCAATTACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
616 679 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
617 680 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
618 681 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
622 685 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
628 721 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
629 722 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
632 725 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
633 726 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
636 729 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
645 738 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
647 740 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
680 820 9.106070 AGTATAAAGTTAAGTCGCCTATTTTGG 57.894 33.333 0.00 0.00 0.00 3.28
681 821 9.101655 GTATAAAGTTAAGTCGCCTATTTTGGA 57.898 33.333 0.00 0.00 0.00 3.53
682 822 6.887626 AAAGTTAAGTCGCCTATTTTGGAA 57.112 33.333 0.00 0.00 0.00 3.53
683 823 5.874895 AGTTAAGTCGCCTATTTTGGAAC 57.125 39.130 0.00 0.00 0.00 3.62
684 824 4.390909 AGTTAAGTCGCCTATTTTGGAACG 59.609 41.667 0.00 0.00 0.00 3.95
685 825 1.734163 AGTCGCCTATTTTGGAACGG 58.266 50.000 0.00 0.00 0.00 4.44
686 826 1.276989 AGTCGCCTATTTTGGAACGGA 59.723 47.619 0.00 0.00 0.00 4.69
687 827 1.664151 GTCGCCTATTTTGGAACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
689 829 1.933853 CGCCTATTTTGGAACGGAGAG 59.066 52.381 0.00 0.00 0.00 3.20
690 830 2.418197 CGCCTATTTTGGAACGGAGAGA 60.418 50.000 0.00 0.00 0.00 3.10
704 964 1.488393 GGAGAGAGTATTTGCCTGGCT 59.512 52.381 21.03 1.67 0.00 4.75
705 965 2.092699 GGAGAGAGTATTTGCCTGGCTT 60.093 50.000 21.03 7.38 0.00 4.35
706 966 3.134804 GGAGAGAGTATTTGCCTGGCTTA 59.865 47.826 21.03 8.02 0.00 3.09
707 967 4.202409 GGAGAGAGTATTTGCCTGGCTTAT 60.202 45.833 21.03 14.74 0.00 1.73
714 974 5.998363 AGTATTTGCCTGGCTTATAGCTTAC 59.002 40.000 21.03 9.81 41.99 2.34
721 981 5.278512 GCCTGGCTTATAGCTTACCAAAATC 60.279 44.000 12.43 0.00 41.99 2.17
723 983 6.016777 CCTGGCTTATAGCTTACCAAAATCAG 60.017 42.308 0.00 0.00 41.99 2.90
736 996 2.742053 CAAAATCAGATCGTGAACCGGT 59.258 45.455 0.00 0.00 39.19 5.28
745 1005 1.292541 GTGAACCGGTCTCCCTCAC 59.707 63.158 17.98 17.98 0.00 3.51
798 1066 4.322049 CGTATCTCAGGTTTCCTCAACAGT 60.322 45.833 0.00 0.00 37.07 3.55
804 1072 3.815401 CAGGTTTCCTCAACAGTTAGTGG 59.185 47.826 0.00 0.00 37.07 4.00
827 1095 5.505819 GGGTGAAAGACAGAAACTTTGCTAC 60.506 44.000 0.00 0.00 37.64 3.58
882 1150 2.054232 AGCAAAGATCCCATGCTCTG 57.946 50.000 10.70 0.00 46.98 3.35
884 1152 1.684248 GCAAAGATCCCATGCTCTGGT 60.684 52.381 7.51 0.00 44.30 4.00
887 1155 3.853355 AAGATCCCATGCTCTGGTTAG 57.147 47.619 5.35 0.00 44.30 2.34
938 1206 0.178995 CCTCTCCTCCCCGTACTACC 60.179 65.000 0.00 0.00 0.00 3.18
1028 1296 1.144716 CTAAGCCTGATCTGCCGCA 59.855 57.895 0.00 0.00 0.00 5.69
1079 1347 3.058450 GCATCATCATGGAGAAGACGAG 58.942 50.000 0.00 0.00 0.00 4.18
1122 1390 2.125673 CCAGTCCGCAACTACCGG 60.126 66.667 0.00 0.00 46.88 5.28
1165 1433 3.019564 GTCATAGGTGAGCTTTGCCATT 58.980 45.455 0.00 0.00 34.36 3.16
1173 1441 2.305009 GAGCTTTGCCATTCCAGCTAT 58.695 47.619 0.00 0.00 42.80 2.97
1178 1446 0.179009 TGCCATTCCAGCTATCTGCC 60.179 55.000 0.00 0.00 44.23 4.85
1204 1472 7.506296 CTGTTTGTTTTCCTTGAAACAGTAC 57.494 36.000 13.01 6.94 46.60 2.73
1210 1478 2.734670 TCCTTGAAACAGTACGACGTG 58.265 47.619 11.56 0.00 0.00 4.49
1240 1508 8.550585 ACTCTGAACACTACTAACTAGGAGTAT 58.449 37.037 1.17 0.00 45.55 2.12
1252 1640 2.473576 AGGAGTATCAGGGGTACACC 57.526 55.000 5.83 5.83 36.25 4.16
1253 1641 1.938069 AGGAGTATCAGGGGTACACCT 59.062 52.381 12.16 12.16 43.08 4.00
1257 1645 4.284178 GAGTATCAGGGGTACACCTACAA 58.716 47.826 18.59 5.89 39.34 2.41
1258 1646 4.892198 AGTATCAGGGGTACACCTACAAT 58.108 43.478 18.59 13.22 39.34 2.71
1260 1648 6.631107 AGTATCAGGGGTACACCTACAATAT 58.369 40.000 18.59 8.21 39.34 1.28
1270 1658 6.202188 GGTACACCTACAATATGATTTCGGTG 59.798 42.308 0.00 0.00 44.58 4.94
1272 1660 6.049149 ACACCTACAATATGATTTCGGTGAG 58.951 40.000 11.60 0.00 42.36 3.51
1371 1762 7.504403 CAGTAGTAAGAATCCATGGTCTTGAT 58.496 38.462 22.04 14.62 35.69 2.57
1383 1774 5.303971 CATGGTCTTGATTCTCTGTATCCC 58.696 45.833 0.00 0.00 0.00 3.85
1392 1783 1.063942 TCTCTGTATCCCGCCTCTTCA 60.064 52.381 0.00 0.00 0.00 3.02
1397 1788 2.037641 TGTATCCCGCCTCTTCATCATG 59.962 50.000 0.00 0.00 0.00 3.07
1399 1790 1.153107 CCCGCCTCTTCATCATGCA 60.153 57.895 0.00 0.00 0.00 3.96
1400 1791 0.749091 CCCGCCTCTTCATCATGCAA 60.749 55.000 0.00 0.00 0.00 4.08
1401 1792 1.097232 CCGCCTCTTCATCATGCAAA 58.903 50.000 0.00 0.00 0.00 3.68
1402 1793 1.679680 CCGCCTCTTCATCATGCAAAT 59.320 47.619 0.00 0.00 0.00 2.32
1403 1794 2.543031 CCGCCTCTTCATCATGCAAATG 60.543 50.000 6.18 6.18 0.00 2.32
1406 1797 4.201940 CGCCTCTTCATCATGCAAATGTAA 60.202 41.667 11.05 5.33 0.00 2.41
1449 2021 8.703604 TGCTGAATTACAACTAGTGACTAATC 57.296 34.615 0.00 0.00 0.00 1.75
1470 2042 4.081406 TCAAAATGGAGATTGGACAGTGG 58.919 43.478 0.00 0.00 0.00 4.00
1563 2139 3.003480 GACACTATGGAACTTGCTGGTC 58.997 50.000 0.00 0.00 0.00 4.02
1659 2235 4.175337 GCCACCATCCTAGGCGCA 62.175 66.667 10.83 0.00 38.86 6.09
2751 3350 4.276678 GCTATGATGTCATGCTTTTGGCTA 59.723 41.667 5.78 0.00 42.39 3.93
3172 3771 6.256321 GCCGGTTTAGTTTAATCTATCACGAA 59.744 38.462 1.90 0.00 0.00 3.85
3285 3893 3.570975 GTGGGAATGATCAAGCATGCATA 59.429 43.478 21.98 4.64 0.00 3.14
3287 3895 3.367087 GGGAATGATCAAGCATGCATAGC 60.367 47.826 21.98 7.86 0.00 2.97
3296 3906 2.921821 AGCATGCATAGCACATGTGTA 58.078 42.857 26.01 16.88 45.40 2.90
3306 3916 3.933155 GCACATGTGTAGTATGAGTGC 57.067 47.619 26.01 4.27 43.08 4.40
3322 3947 0.309922 GTGCGATGAGGAATGCATGG 59.690 55.000 0.00 0.00 39.85 3.66
3431 4099 1.404748 GACTGACTACTACTTCCGCCC 59.595 57.143 0.00 0.00 0.00 6.13
3445 4113 1.837439 TCCGCCCAGTTGTATTCATCT 59.163 47.619 0.00 0.00 0.00 2.90
3448 4116 3.131396 CGCCCAGTTGTATTCATCTACC 58.869 50.000 0.00 0.00 0.00 3.18
3449 4117 3.431626 CGCCCAGTTGTATTCATCTACCA 60.432 47.826 0.00 0.00 0.00 3.25
3450 4118 4.523083 GCCCAGTTGTATTCATCTACCAA 58.477 43.478 0.00 0.00 0.00 3.67
3451 4119 4.335594 GCCCAGTTGTATTCATCTACCAAC 59.664 45.833 0.00 0.00 0.00 3.77
3453 4121 5.943416 CCCAGTTGTATTCATCTACCAACAA 59.057 40.000 0.00 0.00 0.00 2.83
3455 4123 7.773224 CCCAGTTGTATTCATCTACCAACAATA 59.227 37.037 0.00 0.00 0.00 1.90
3456 4124 9.173021 CCAGTTGTATTCATCTACCAACAATAA 57.827 33.333 0.00 0.00 0.00 1.40
3500 6401 6.652900 TCGTCAAATTCATCTACCAACAATCA 59.347 34.615 0.00 0.00 0.00 2.57
3712 6645 2.534298 TGTTGTTTGTCATGTTTGGCG 58.466 42.857 0.00 0.00 0.00 5.69
3885 6832 3.976793 GTCTCGGTTGACGTGGATATA 57.023 47.619 0.00 0.00 44.69 0.86
3932 6879 9.542462 TCAACATACAAGTATGAAGTATTAGCC 57.458 33.333 23.02 0.00 44.22 3.93
3944 6891 3.579709 AGTATTAGCCGAGCAATCATCG 58.420 45.455 0.00 0.00 39.86 3.84
3954 6901 1.498865 GCAATCATCGGCGTAGGGTG 61.499 60.000 6.85 2.48 0.00 4.61
3955 6902 0.179084 CAATCATCGGCGTAGGGTGT 60.179 55.000 6.85 0.00 0.00 4.16
3956 6903 0.104304 AATCATCGGCGTAGGGTGTC 59.896 55.000 6.85 0.00 0.00 3.67
3957 6904 0.755698 ATCATCGGCGTAGGGTGTCT 60.756 55.000 6.85 0.00 0.00 3.41
3958 6905 0.968901 TCATCGGCGTAGGGTGTCTT 60.969 55.000 6.85 0.00 0.00 3.01
3959 6906 0.806102 CATCGGCGTAGGGTGTCTTG 60.806 60.000 6.85 0.00 0.00 3.02
3960 6907 0.968901 ATCGGCGTAGGGTGTCTTGA 60.969 55.000 6.85 0.00 0.00 3.02
3961 6908 0.968901 TCGGCGTAGGGTGTCTTGAT 60.969 55.000 6.85 0.00 0.00 2.57
3962 6909 0.806102 CGGCGTAGGGTGTCTTGATG 60.806 60.000 0.00 0.00 0.00 3.07
3963 6910 1.090052 GGCGTAGGGTGTCTTGATGC 61.090 60.000 0.00 0.00 0.00 3.91
4073 7321 8.722480 ACTACTAGATAACGTACATGTACACA 57.278 34.615 30.17 17.28 35.87 3.72
4074 7322 9.334947 ACTACTAGATAACGTACATGTACACAT 57.665 33.333 30.17 20.52 35.87 3.21
4075 7323 9.808808 CTACTAGATAACGTACATGTACACATC 57.191 37.037 30.17 25.57 35.87 3.06
4076 7324 7.646314 ACTAGATAACGTACATGTACACATCC 58.354 38.462 30.17 17.73 35.87 3.51
4077 7325 6.710597 AGATAACGTACATGTACACATCCT 57.289 37.500 30.17 19.31 35.87 3.24
4078 7326 7.812690 AGATAACGTACATGTACACATCCTA 57.187 36.000 30.17 14.47 35.87 2.94
4079 7327 7.646314 AGATAACGTACATGTACACATCCTAC 58.354 38.462 30.17 15.42 35.87 3.18
4080 7328 4.282950 ACGTACATGTACACATCCTACG 57.717 45.455 30.17 20.13 41.34 3.51
4081 7329 3.691118 ACGTACATGTACACATCCTACGT 59.309 43.478 30.17 20.72 42.46 3.57
4082 7330 4.201851 ACGTACATGTACACATCCTACGTC 60.202 45.833 30.17 4.35 43.03 4.34
4131 7379 1.065551 TGCATCCACACTCTATCGACG 59.934 52.381 0.00 0.00 0.00 5.12
4141 7389 3.122278 CACTCTATCGACGACTAGCTAGC 59.878 52.174 20.91 6.62 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.381045 CGTTGCTTTTCCCTTTTCTTCC 58.619 45.455 0.00 0.00 0.00 3.46
2 3 3.181479 ACCGTTGCTTTTCCCTTTTCTTC 60.181 43.478 0.00 0.00 0.00 2.87
3 4 2.764010 ACCGTTGCTTTTCCCTTTTCTT 59.236 40.909 0.00 0.00 0.00 2.52
5 6 2.159156 ACACCGTTGCTTTTCCCTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
6 7 1.828595 ACACCGTTGCTTTTCCCTTTT 59.171 42.857 0.00 0.00 0.00 2.27
7 8 1.136110 CACACCGTTGCTTTTCCCTTT 59.864 47.619 0.00 0.00 0.00 3.11
8 9 0.744281 CACACCGTTGCTTTTCCCTT 59.256 50.000 0.00 0.00 0.00 3.95
9 10 1.734388 GCACACCGTTGCTTTTCCCT 61.734 55.000 0.00 0.00 39.59 4.20
10 11 1.299850 GCACACCGTTGCTTTTCCC 60.300 57.895 0.00 0.00 39.59 3.97
11 12 0.179124 TTGCACACCGTTGCTTTTCC 60.179 50.000 0.00 0.00 43.41 3.13
13 14 1.408702 AGATTGCACACCGTTGCTTTT 59.591 42.857 0.00 0.00 43.41 2.27
15 16 0.593128 GAGATTGCACACCGTTGCTT 59.407 50.000 0.00 0.00 43.41 3.91
16 17 1.237285 GGAGATTGCACACCGTTGCT 61.237 55.000 0.00 0.00 43.41 3.91
17 18 1.210155 GGAGATTGCACACCGTTGC 59.790 57.895 0.00 0.00 43.31 4.17
18 19 0.950836 TTGGAGATTGCACACCGTTG 59.049 50.000 0.00 0.00 0.00 4.10
20 21 1.812571 GATTTGGAGATTGCACACCGT 59.187 47.619 0.00 0.00 0.00 4.83
21 22 1.811965 TGATTTGGAGATTGCACACCG 59.188 47.619 0.00 0.00 0.00 4.94
22 23 4.082081 TGAATGATTTGGAGATTGCACACC 60.082 41.667 0.00 0.00 0.00 4.16
24 25 5.477637 TCTTGAATGATTTGGAGATTGCACA 59.522 36.000 0.00 0.00 0.00 4.57
26 27 6.593268 TTCTTGAATGATTTGGAGATTGCA 57.407 33.333 0.00 0.00 0.00 4.08
65 66 4.340950 TGAGACACCTTGCCCTTTTAAAAG 59.659 41.667 19.19 19.19 35.79 2.27
95 123 5.772825 AACTACGCTTAATATACGGGTGA 57.227 39.130 0.00 0.00 0.00 4.02
98 126 4.151157 GCCAAACTACGCTTAATATACGGG 59.849 45.833 0.00 0.00 0.00 5.28
101 129 5.058490 TGGGCCAAACTACGCTTAATATAC 58.942 41.667 2.13 0.00 0.00 1.47
120 148 0.690762 TAGAACACCTCAGGTTGGGC 59.309 55.000 0.00 0.00 31.02 5.36
123 151 6.313905 GTGTAATCATAGAACACCTCAGGTTG 59.686 42.308 0.00 0.00 38.02 3.77
152 180 8.970020 TCGTTGATTTAGTGGTAGGTCTTATTA 58.030 33.333 0.00 0.00 0.00 0.98
153 181 7.844009 TCGTTGATTTAGTGGTAGGTCTTATT 58.156 34.615 0.00 0.00 0.00 1.40
158 186 4.868734 CCTTCGTTGATTTAGTGGTAGGTC 59.131 45.833 0.00 0.00 0.00 3.85
159 187 4.529377 TCCTTCGTTGATTTAGTGGTAGGT 59.471 41.667 0.00 0.00 0.00 3.08
163 191 4.039973 TGTCTCCTTCGTTGATTTAGTGGT 59.960 41.667 0.00 0.00 0.00 4.16
164 192 4.566004 TGTCTCCTTCGTTGATTTAGTGG 58.434 43.478 0.00 0.00 0.00 4.00
165 193 6.727824 ATTGTCTCCTTCGTTGATTTAGTG 57.272 37.500 0.00 0.00 0.00 2.74
168 196 6.128282 GCTGAATTGTCTCCTTCGTTGATTTA 60.128 38.462 0.00 0.00 0.00 1.40
169 197 5.335191 GCTGAATTGTCTCCTTCGTTGATTT 60.335 40.000 0.00 0.00 0.00 2.17
174 202 3.409026 AGCTGAATTGTCTCCTTCGTT 57.591 42.857 0.00 0.00 0.00 3.85
175 203 3.511934 ACTAGCTGAATTGTCTCCTTCGT 59.488 43.478 0.00 0.00 0.00 3.85
176 204 3.862267 CACTAGCTGAATTGTCTCCTTCG 59.138 47.826 0.00 0.00 0.00 3.79
177 205 4.629200 CACACTAGCTGAATTGTCTCCTTC 59.371 45.833 0.00 0.00 0.00 3.46
178 206 4.564406 CCACACTAGCTGAATTGTCTCCTT 60.564 45.833 0.00 0.00 0.00 3.36
180 208 3.055819 TCCACACTAGCTGAATTGTCTCC 60.056 47.826 0.00 0.00 0.00 3.71
186 214 3.006967 AGTTCGTCCACACTAGCTGAATT 59.993 43.478 0.00 0.00 0.00 2.17
189 217 1.617322 AGTTCGTCCACACTAGCTGA 58.383 50.000 0.00 0.00 0.00 4.26
190 218 2.061773 CAAGTTCGTCCACACTAGCTG 58.938 52.381 0.00 0.00 0.00 4.24
193 221 3.254060 CCATCAAGTTCGTCCACACTAG 58.746 50.000 0.00 0.00 0.00 2.57
195 223 1.878102 GCCATCAAGTTCGTCCACACT 60.878 52.381 0.00 0.00 0.00 3.55
196 224 0.517316 GCCATCAAGTTCGTCCACAC 59.483 55.000 0.00 0.00 0.00 3.82
201 229 8.138365 TGTTATAATAAGCCATCAAGTTCGTC 57.862 34.615 0.00 0.00 0.00 4.20
202 230 8.500753 TTGTTATAATAAGCCATCAAGTTCGT 57.499 30.769 0.00 0.00 0.00 3.85
239 267 2.949451 AGAGAAGCATCACGTGTAGG 57.051 50.000 16.51 7.44 0.00 3.18
240 268 4.489810 AGAAAGAGAAGCATCACGTGTAG 58.510 43.478 16.51 10.40 0.00 2.74
241 269 4.521130 AGAAAGAGAAGCATCACGTGTA 57.479 40.909 16.51 2.58 0.00 2.90
242 270 3.393089 AGAAAGAGAAGCATCACGTGT 57.607 42.857 16.51 0.00 0.00 4.49
243 271 4.212004 TGAAAGAAAGAGAAGCATCACGTG 59.788 41.667 9.94 9.94 0.00 4.49
244 272 4.212214 GTGAAAGAAAGAGAAGCATCACGT 59.788 41.667 0.00 0.00 0.00 4.49
245 273 4.212004 TGTGAAAGAAAGAGAAGCATCACG 59.788 41.667 0.00 0.00 38.93 4.35
246 274 5.468072 TCTGTGAAAGAAAGAGAAGCATCAC 59.532 40.000 0.00 0.00 37.15 3.06
248 276 6.740411 ATCTGTGAAAGAAAGAGAAGCATC 57.260 37.500 0.00 0.00 38.79 3.91
251 279 7.608308 ATGTATCTGTGAAAGAAAGAGAAGC 57.392 36.000 0.00 0.00 38.79 3.86
252 280 9.645059 TGTATGTATCTGTGAAAGAAAGAGAAG 57.355 33.333 0.00 0.00 38.79 2.85
254 282 9.591792 CATGTATGTATCTGTGAAAGAAAGAGA 57.408 33.333 0.00 0.00 38.79 3.10
270 333 6.290294 GGGTTACCCGATACATGTATGTAT 57.710 41.667 22.93 15.38 43.97 2.29
285 348 3.709633 AGGTTCGCCGGGTTACCC 61.710 66.667 11.09 11.09 43.66 3.69
288 351 2.658422 GACAGGTTCGCCGGGTTA 59.342 61.111 2.18 0.00 43.66 2.85
289 352 4.324991 GGACAGGTTCGCCGGGTT 62.325 66.667 2.18 0.00 43.66 4.11
293 356 1.076332 CTTTTAGGACAGGTTCGCCG 58.924 55.000 0.00 0.00 43.66 6.46
294 357 2.180432 ACTTTTAGGACAGGTTCGCC 57.820 50.000 0.00 0.00 37.60 5.54
296 359 5.744666 TTTCAACTTTTAGGACAGGTTCG 57.255 39.130 0.00 0.00 0.00 3.95
299 362 5.126545 GGTGTTTTCAACTTTTAGGACAGGT 59.873 40.000 0.00 0.00 34.17 4.00
301 364 5.065474 TCGGTGTTTTCAACTTTTAGGACAG 59.935 40.000 0.00 0.00 34.95 3.51
302 365 4.942483 TCGGTGTTTTCAACTTTTAGGACA 59.058 37.500 0.00 0.00 34.95 4.02
303 366 5.488645 TCGGTGTTTTCAACTTTTAGGAC 57.511 39.130 0.00 0.00 34.95 3.85
305 368 5.038683 GGTTCGGTGTTTTCAACTTTTAGG 58.961 41.667 0.00 0.00 34.95 2.69
306 369 4.731480 CGGTTCGGTGTTTTCAACTTTTAG 59.269 41.667 0.00 0.00 34.95 1.85
307 370 4.394300 TCGGTTCGGTGTTTTCAACTTTTA 59.606 37.500 0.00 0.00 34.95 1.52
308 371 3.190953 TCGGTTCGGTGTTTTCAACTTTT 59.809 39.130 0.00 0.00 34.95 2.27
309 372 2.748532 TCGGTTCGGTGTTTTCAACTTT 59.251 40.909 0.00 0.00 34.95 2.66
310 373 2.353579 CTCGGTTCGGTGTTTTCAACTT 59.646 45.455 0.00 0.00 34.95 2.66
311 374 1.937899 CTCGGTTCGGTGTTTTCAACT 59.062 47.619 0.00 0.00 34.95 3.16
312 375 1.935199 TCTCGGTTCGGTGTTTTCAAC 59.065 47.619 0.00 0.00 0.00 3.18
313 376 2.312722 TCTCGGTTCGGTGTTTTCAA 57.687 45.000 0.00 0.00 0.00 2.69
314 377 2.312722 TTCTCGGTTCGGTGTTTTCA 57.687 45.000 0.00 0.00 0.00 2.69
316 379 4.998672 TGATATTTCTCGGTTCGGTGTTTT 59.001 37.500 0.00 0.00 0.00 2.43
318 381 4.196626 TGATATTTCTCGGTTCGGTGTT 57.803 40.909 0.00 0.00 0.00 3.32
319 382 3.880047 TGATATTTCTCGGTTCGGTGT 57.120 42.857 0.00 0.00 0.00 4.16
320 383 3.555956 CCTTGATATTTCTCGGTTCGGTG 59.444 47.826 0.00 0.00 0.00 4.94
321 384 3.793559 CCTTGATATTTCTCGGTTCGGT 58.206 45.455 0.00 0.00 0.00 4.69
322 385 2.544267 GCCTTGATATTTCTCGGTTCGG 59.456 50.000 0.00 0.00 0.00 4.30
323 386 3.458189 AGCCTTGATATTTCTCGGTTCG 58.542 45.455 0.00 0.00 0.00 3.95
324 387 5.502544 CGAAAGCCTTGATATTTCTCGGTTC 60.503 44.000 0.00 0.00 32.08 3.62
325 388 4.332819 CGAAAGCCTTGATATTTCTCGGTT 59.667 41.667 0.00 0.00 32.08 4.44
326 389 3.871594 CGAAAGCCTTGATATTTCTCGGT 59.128 43.478 0.00 0.00 32.08 4.69
330 393 6.049790 GGTCTACGAAAGCCTTGATATTTCT 58.950 40.000 0.00 0.00 32.08 2.52
331 394 6.049790 AGGTCTACGAAAGCCTTGATATTTC 58.950 40.000 0.00 0.00 30.32 2.17
332 395 5.990668 AGGTCTACGAAAGCCTTGATATTT 58.009 37.500 0.00 0.00 30.32 1.40
335 398 5.419788 TGTTAGGTCTACGAAAGCCTTGATA 59.580 40.000 0.00 0.00 34.68 2.15
336 399 4.222145 TGTTAGGTCTACGAAAGCCTTGAT 59.778 41.667 0.00 0.00 34.68 2.57
337 400 3.575256 TGTTAGGTCTACGAAAGCCTTGA 59.425 43.478 0.00 0.00 34.68 3.02
338 401 3.921677 TGTTAGGTCTACGAAAGCCTTG 58.078 45.455 0.00 0.00 34.68 3.61
339 402 4.820894 ATGTTAGGTCTACGAAAGCCTT 57.179 40.909 0.00 0.00 34.68 4.35
340 403 4.222145 TCAATGTTAGGTCTACGAAAGCCT 59.778 41.667 0.00 0.36 36.24 4.58
341 404 4.501071 TCAATGTTAGGTCTACGAAAGCC 58.499 43.478 0.00 0.00 0.00 4.35
342 405 5.581085 ACATCAATGTTAGGTCTACGAAAGC 59.419 40.000 0.00 0.00 37.90 3.51
357 420 4.724074 AATCCAATGCGAACATCAATGT 57.276 36.364 0.00 0.00 44.20 2.71
358 421 7.703298 AATAAATCCAATGCGAACATCAATG 57.297 32.000 0.00 0.00 34.62 2.82
359 422 7.980662 TGAAATAAATCCAATGCGAACATCAAT 59.019 29.630 0.00 0.00 34.62 2.57
361 424 6.861144 TGAAATAAATCCAATGCGAACATCA 58.139 32.000 0.00 0.00 34.62 3.07
362 425 6.418819 CCTGAAATAAATCCAATGCGAACATC 59.581 38.462 0.00 0.00 34.62 3.06
363 426 6.127366 ACCTGAAATAAATCCAATGCGAACAT 60.127 34.615 0.00 0.00 38.49 2.71
364 427 5.184864 ACCTGAAATAAATCCAATGCGAACA 59.815 36.000 0.00 0.00 0.00 3.18
365 428 5.650543 ACCTGAAATAAATCCAATGCGAAC 58.349 37.500 0.00 0.00 0.00 3.95
366 429 5.652014 AGACCTGAAATAAATCCAATGCGAA 59.348 36.000 0.00 0.00 0.00 4.70
368 431 5.505173 AGACCTGAAATAAATCCAATGCG 57.495 39.130 0.00 0.00 0.00 4.73
369 432 6.473455 CGAAAGACCTGAAATAAATCCAATGC 59.527 38.462 0.00 0.00 0.00 3.56
370 433 6.974622 CCGAAAGACCTGAAATAAATCCAATG 59.025 38.462 0.00 0.00 0.00 2.82
372 435 6.007703 ACCGAAAGACCTGAAATAAATCCAA 58.992 36.000 0.00 0.00 0.00 3.53
373 436 5.414454 CACCGAAAGACCTGAAATAAATCCA 59.586 40.000 0.00 0.00 0.00 3.41
374 437 5.646360 TCACCGAAAGACCTGAAATAAATCC 59.354 40.000 0.00 0.00 0.00 3.01
375 438 6.737254 TCACCGAAAGACCTGAAATAAATC 57.263 37.500 0.00 0.00 0.00 2.17
376 439 6.659242 ACATCACCGAAAGACCTGAAATAAAT 59.341 34.615 0.00 0.00 0.00 1.40
379 442 4.935205 CACATCACCGAAAGACCTGAAATA 59.065 41.667 0.00 0.00 0.00 1.40
380 443 3.753272 CACATCACCGAAAGACCTGAAAT 59.247 43.478 0.00 0.00 0.00 2.17
381 444 3.138304 CACATCACCGAAAGACCTGAAA 58.862 45.455 0.00 0.00 0.00 2.69
384 447 1.800586 CACACATCACCGAAAGACCTG 59.199 52.381 0.00 0.00 0.00 4.00
385 448 1.416401 ACACACATCACCGAAAGACCT 59.584 47.619 0.00 0.00 0.00 3.85
386 449 1.878953 ACACACATCACCGAAAGACC 58.121 50.000 0.00 0.00 0.00 3.85
388 451 3.130633 CTGAACACACATCACCGAAAGA 58.869 45.455 0.00 0.00 0.00 2.52
389 452 2.872245 ACTGAACACACATCACCGAAAG 59.128 45.455 0.00 0.00 0.00 2.62
390 453 2.611751 CACTGAACACACATCACCGAAA 59.388 45.455 0.00 0.00 0.00 3.46
391 454 2.159028 TCACTGAACACACATCACCGAA 60.159 45.455 0.00 0.00 0.00 4.30
392 455 1.410882 TCACTGAACACACATCACCGA 59.589 47.619 0.00 0.00 0.00 4.69
393 456 1.864565 TCACTGAACACACATCACCG 58.135 50.000 0.00 0.00 0.00 4.94
394 457 3.003689 CCTTTCACTGAACACACATCACC 59.996 47.826 0.00 0.00 0.00 4.02
396 459 4.129380 CTCCTTTCACTGAACACACATCA 58.871 43.478 0.00 0.00 0.00 3.07
397 460 4.212214 GTCTCCTTTCACTGAACACACATC 59.788 45.833 0.00 0.00 0.00 3.06
400 463 2.540101 CGTCTCCTTTCACTGAACACAC 59.460 50.000 0.00 0.00 0.00 3.82
401 464 2.167693 ACGTCTCCTTTCACTGAACACA 59.832 45.455 0.00 0.00 0.00 3.72
403 466 3.454375 GAACGTCTCCTTTCACTGAACA 58.546 45.455 0.00 0.00 0.00 3.18
405 468 2.224209 GGGAACGTCTCCTTTCACTGAA 60.224 50.000 13.94 0.00 44.68 3.02
406 469 1.343465 GGGAACGTCTCCTTTCACTGA 59.657 52.381 13.94 0.00 44.68 3.41
420 483 7.907056 TATGCCTTCATAGTCAACGGGAACG 62.907 48.000 0.00 0.00 46.27 3.95
422 485 1.626321 TGCCTTCATAGTCAACGGGAA 59.374 47.619 0.00 0.00 0.00 3.97
423 486 1.271856 TGCCTTCATAGTCAACGGGA 58.728 50.000 0.00 0.00 0.00 5.14
425 488 5.582269 CCATATATGCCTTCATAGTCAACGG 59.418 44.000 7.24 0.00 38.46 4.44
426 489 5.063944 GCCATATATGCCTTCATAGTCAACG 59.936 44.000 7.24 0.00 38.46 4.10
427 490 5.063944 CGCCATATATGCCTTCATAGTCAAC 59.936 44.000 7.24 0.00 38.46 3.18
429 492 4.466015 TCGCCATATATGCCTTCATAGTCA 59.534 41.667 7.24 0.00 38.46 3.41
430 493 5.011090 TCGCCATATATGCCTTCATAGTC 57.989 43.478 7.24 0.00 38.46 2.59
431 494 5.620738 ATCGCCATATATGCCTTCATAGT 57.379 39.130 7.24 0.00 38.46 2.12
433 496 6.653020 AGAAATCGCCATATATGCCTTCATA 58.347 36.000 7.24 0.00 39.31 2.15
436 499 5.412594 TGAAGAAATCGCCATATATGCCTTC 59.587 40.000 7.24 10.14 0.00 3.46
437 500 5.316167 TGAAGAAATCGCCATATATGCCTT 58.684 37.500 7.24 2.35 0.00 4.35
438 501 4.910195 TGAAGAAATCGCCATATATGCCT 58.090 39.130 7.24 0.00 0.00 4.75
439 502 5.627499 TTGAAGAAATCGCCATATATGCC 57.373 39.130 7.24 0.00 0.00 4.40
453 516 4.616604 CGCAGCATTTGGAGATTGAAGAAA 60.617 41.667 0.00 0.00 0.00 2.52
454 517 3.119743 CGCAGCATTTGGAGATTGAAGAA 60.120 43.478 0.00 0.00 0.00 2.52
455 518 2.421073 CGCAGCATTTGGAGATTGAAGA 59.579 45.455 0.00 0.00 0.00 2.87
456 519 2.793933 CGCAGCATTTGGAGATTGAAG 58.206 47.619 0.00 0.00 0.00 3.02
472 535 3.869272 GACATTGAGCCGGCGCAG 61.869 66.667 31.41 23.41 37.52 5.18
477 540 3.740128 CTCCGGGACATTGAGCCGG 62.740 68.421 0.00 0.00 42.44 6.13
481 544 0.467384 AGCATCTCCGGGACATTGAG 59.533 55.000 0.00 0.00 0.00 3.02
482 545 0.465705 GAGCATCTCCGGGACATTGA 59.534 55.000 0.00 0.00 0.00 2.57
483 546 0.178767 TGAGCATCTCCGGGACATTG 59.821 55.000 0.00 0.00 34.92 2.82
484 547 1.135094 ATGAGCATCTCCGGGACATT 58.865 50.000 0.00 0.00 34.92 2.71
485 548 1.898472 CTATGAGCATCTCCGGGACAT 59.102 52.381 0.00 0.00 34.92 3.06
486 549 1.332195 CTATGAGCATCTCCGGGACA 58.668 55.000 0.00 0.00 34.92 4.02
487 550 0.605589 CCTATGAGCATCTCCGGGAC 59.394 60.000 0.00 0.00 34.92 4.46
489 552 0.542938 TCCCTATGAGCATCTCCGGG 60.543 60.000 0.00 0.00 34.76 5.73
490 553 1.566211 ATCCCTATGAGCATCTCCGG 58.434 55.000 0.00 0.00 34.92 5.14
491 554 2.692557 CCTATCCCTATGAGCATCTCCG 59.307 54.545 0.00 0.00 34.92 4.63
492 555 3.718723 ACCTATCCCTATGAGCATCTCC 58.281 50.000 0.00 0.00 34.92 3.71
493 556 6.685116 GCATAACCTATCCCTATGAGCATCTC 60.685 46.154 0.00 0.00 34.92 2.75
494 557 5.130145 GCATAACCTATCCCTATGAGCATCT 59.870 44.000 0.00 0.00 34.92 2.90
495 558 5.104776 TGCATAACCTATCCCTATGAGCATC 60.105 44.000 0.00 0.00 0.00 3.91
497 560 4.167319 TGCATAACCTATCCCTATGAGCA 58.833 43.478 0.00 0.00 0.00 4.26
498 561 4.826274 TGCATAACCTATCCCTATGAGC 57.174 45.455 0.00 0.00 0.00 4.26
499 562 5.121811 GCATGCATAACCTATCCCTATGAG 58.878 45.833 14.21 0.00 0.00 2.90
500 563 4.383010 CGCATGCATAACCTATCCCTATGA 60.383 45.833 19.57 0.00 0.00 2.15
501 564 3.873361 CGCATGCATAACCTATCCCTATG 59.127 47.826 19.57 0.00 0.00 2.23
503 566 2.903784 ACGCATGCATAACCTATCCCTA 59.096 45.455 19.57 0.00 0.00 3.53
504 567 1.699634 ACGCATGCATAACCTATCCCT 59.300 47.619 19.57 0.00 0.00 4.20
505 568 1.806542 CACGCATGCATAACCTATCCC 59.193 52.381 19.57 0.00 0.00 3.85
518 581 2.021793 CCGATGAACGCACGCATG 59.978 61.111 0.00 0.00 41.07 4.06
519 582 2.125713 TCCGATGAACGCACGCAT 60.126 55.556 0.00 0.00 41.07 4.73
520 583 2.809174 CTCCGATGAACGCACGCA 60.809 61.111 0.00 0.00 41.07 5.24
521 584 2.809601 ACTCCGATGAACGCACGC 60.810 61.111 0.00 0.00 41.07 5.34
523 586 1.061131 CATTCACTCCGATGAACGCAC 59.939 52.381 0.00 0.00 41.29 5.34
526 589 4.026558 CACATACATTCACTCCGATGAACG 60.027 45.833 0.00 0.00 41.29 3.95
529 592 3.118811 TGCACATACATTCACTCCGATGA 60.119 43.478 0.00 0.00 0.00 2.92
531 594 3.541996 TGCACATACATTCACTCCGAT 57.458 42.857 0.00 0.00 0.00 4.18
532 595 3.541996 ATGCACATACATTCACTCCGA 57.458 42.857 0.00 0.00 0.00 4.55
533 596 4.751600 ACATATGCACATACATTCACTCCG 59.248 41.667 1.58 0.00 0.00 4.63
534 597 5.528690 ACACATATGCACATACATTCACTCC 59.471 40.000 1.58 0.00 0.00 3.85
535 598 6.258507 TCACACATATGCACATACATTCACTC 59.741 38.462 1.58 0.00 0.00 3.51
536 599 6.114767 TCACACATATGCACATACATTCACT 58.885 36.000 1.58 0.00 0.00 3.41
537 600 6.362210 TCACACATATGCACATACATTCAC 57.638 37.500 1.58 0.00 0.00 3.18
538 601 5.007921 GCTCACACATATGCACATACATTCA 59.992 40.000 1.58 0.00 0.00 2.57
539 602 5.446709 GCTCACACATATGCACATACATTC 58.553 41.667 1.58 0.00 0.00 2.67
540 603 4.024641 CGCTCACACATATGCACATACATT 60.025 41.667 1.58 0.00 0.00 2.71
541 604 3.495753 CGCTCACACATATGCACATACAT 59.504 43.478 1.58 0.00 0.00 2.29
542 605 2.865551 CGCTCACACATATGCACATACA 59.134 45.455 1.58 0.00 0.00 2.29
543 606 2.866156 ACGCTCACACATATGCACATAC 59.134 45.455 1.58 0.00 0.00 2.39
547 610 1.645034 AGACGCTCACACATATGCAC 58.355 50.000 1.58 0.00 0.00 4.57
549 612 1.256376 CGAAGACGCTCACACATATGC 59.744 52.381 1.58 0.00 0.00 3.14
551 614 2.423892 AGACGAAGACGCTCACACATAT 59.576 45.455 0.00 0.00 43.96 1.78
552 615 1.810755 AGACGAAGACGCTCACACATA 59.189 47.619 0.00 0.00 43.96 2.29
553 616 0.598562 AGACGAAGACGCTCACACAT 59.401 50.000 0.00 0.00 43.96 3.21
555 618 0.317938 ACAGACGAAGACGCTCACAC 60.318 55.000 0.00 0.00 43.96 3.82
556 619 1.069432 GTACAGACGAAGACGCTCACA 60.069 52.381 0.00 0.00 43.96 3.58
557 620 1.197264 AGTACAGACGAAGACGCTCAC 59.803 52.381 0.00 0.00 43.96 3.51
558 621 1.520494 AGTACAGACGAAGACGCTCA 58.480 50.000 0.00 0.00 43.96 4.26
559 622 3.370366 TCTTAGTACAGACGAAGACGCTC 59.630 47.826 0.00 0.00 40.94 5.03
560 623 3.332919 TCTTAGTACAGACGAAGACGCT 58.667 45.455 0.00 0.00 40.94 5.07
561 624 3.736530 TCTTAGTACAGACGAAGACGC 57.263 47.619 0.00 0.00 40.94 5.19
562 625 6.981379 TTTTTCTTAGTACAGACGAAGACG 57.019 37.500 0.00 0.00 44.13 4.18
583 646 5.705905 CGGAGGGAGTAATTGAGAACTTTTT 59.294 40.000 0.00 0.00 0.00 1.94
584 647 5.221864 ACGGAGGGAGTAATTGAGAACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
585 648 4.286291 ACGGAGGGAGTAATTGAGAACTTT 59.714 41.667 0.00 0.00 0.00 2.66
586 649 3.838903 ACGGAGGGAGTAATTGAGAACTT 59.161 43.478 0.00 0.00 0.00 2.66
587 650 3.442076 ACGGAGGGAGTAATTGAGAACT 58.558 45.455 0.00 0.00 0.00 3.01
588 651 3.889520 ACGGAGGGAGTAATTGAGAAC 57.110 47.619 0.00 0.00 0.00 3.01
589 652 3.197116 GGAACGGAGGGAGTAATTGAGAA 59.803 47.826 0.00 0.00 0.00 2.87
590 653 2.764572 GGAACGGAGGGAGTAATTGAGA 59.235 50.000 0.00 0.00 0.00 3.27
591 654 2.500098 TGGAACGGAGGGAGTAATTGAG 59.500 50.000 0.00 0.00 0.00 3.02
592 655 2.542550 TGGAACGGAGGGAGTAATTGA 58.457 47.619 0.00 0.00 0.00 2.57
595 658 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
609 672 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
617 680 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
618 681 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
655 795 9.101655 TCCAAAATAGGCGACTTAACTTTATAC 57.898 33.333 0.00 0.00 43.67 1.47
662 802 4.436451 CCGTTCCAAAATAGGCGACTTAAC 60.436 45.833 0.00 0.00 43.67 2.01
663 803 3.685756 CCGTTCCAAAATAGGCGACTTAA 59.314 43.478 0.00 0.00 43.67 1.85
668 808 1.551430 TCTCCGTTCCAAAATAGGCGA 59.449 47.619 0.00 0.00 0.00 5.54
670 810 3.198872 CTCTCTCCGTTCCAAAATAGGC 58.801 50.000 0.00 0.00 0.00 3.93
671 811 4.473477 ACTCTCTCCGTTCCAAAATAGG 57.527 45.455 0.00 0.00 0.00 2.57
675 815 4.454504 GCAAATACTCTCTCCGTTCCAAAA 59.545 41.667 0.00 0.00 0.00 2.44
680 820 3.190874 CAGGCAAATACTCTCTCCGTTC 58.809 50.000 0.00 0.00 0.00 3.95
681 821 2.093447 CCAGGCAAATACTCTCTCCGTT 60.093 50.000 0.00 0.00 0.00 4.44
682 822 1.482593 CCAGGCAAATACTCTCTCCGT 59.517 52.381 0.00 0.00 0.00 4.69
683 823 1.808133 GCCAGGCAAATACTCTCTCCG 60.808 57.143 6.55 0.00 0.00 4.63
684 824 1.488393 AGCCAGGCAAATACTCTCTCC 59.512 52.381 15.80 0.00 0.00 3.71
685 825 2.998316 AGCCAGGCAAATACTCTCTC 57.002 50.000 15.80 0.00 0.00 3.20
686 826 5.512232 GCTATAAGCCAGGCAAATACTCTCT 60.512 44.000 15.80 0.00 34.48 3.10
687 827 4.693095 GCTATAAGCCAGGCAAATACTCTC 59.307 45.833 15.80 0.00 34.48 3.20
689 829 4.646572 AGCTATAAGCCAGGCAAATACTC 58.353 43.478 15.80 3.81 43.77 2.59
690 830 4.713792 AGCTATAAGCCAGGCAAATACT 57.286 40.909 15.80 7.95 43.77 2.12
704 964 8.201464 TCACGATCTGATTTTGGTAAGCTATAA 58.799 33.333 0.00 0.00 0.00 0.98
705 965 7.722363 TCACGATCTGATTTTGGTAAGCTATA 58.278 34.615 0.00 0.00 0.00 1.31
706 966 6.582636 TCACGATCTGATTTTGGTAAGCTAT 58.417 36.000 0.00 0.00 0.00 2.97
707 967 5.972935 TCACGATCTGATTTTGGTAAGCTA 58.027 37.500 0.00 0.00 0.00 3.32
736 996 0.473694 TTGAGCCAAGGTGAGGGAGA 60.474 55.000 0.00 0.00 0.00 3.71
745 1005 2.159476 CGACATCATGTTTGAGCCAAGG 60.159 50.000 0.00 0.00 34.73 3.61
798 1066 5.367945 AGTTTCTGTCTTTCACCCACTAA 57.632 39.130 0.00 0.00 0.00 2.24
804 1072 4.639135 AGCAAAGTTTCTGTCTTTCACC 57.361 40.909 0.00 0.00 33.58 4.02
827 1095 4.710324 AGAGAGATACGAACAGAGGTAGG 58.290 47.826 0.00 0.00 0.00 3.18
882 1150 6.091849 GCCGTATAAATAGGCTAAAGCTAACC 59.908 42.308 0.00 0.00 46.83 2.85
1030 1298 3.474570 ATCGTGCCCCTCCAGCTC 61.475 66.667 0.00 0.00 0.00 4.09
1034 1302 2.220586 TTGTCATCGTGCCCCTCCA 61.221 57.895 0.00 0.00 0.00 3.86
1040 1308 1.715585 CCATCGTTGTCATCGTGCC 59.284 57.895 3.38 0.00 0.00 5.01
1064 1332 0.532573 GGTGCTCGTCTTCTCCATGA 59.467 55.000 0.00 0.00 0.00 3.07
1143 1411 1.350684 TGGCAAAGCTCACCTATGACA 59.649 47.619 0.00 0.00 0.00 3.58
1165 1433 1.871418 AACAGAGGCAGATAGCTGGA 58.129 50.000 10.52 0.00 44.79 3.86
1173 1441 3.297134 AGGAAAACAAACAGAGGCAGA 57.703 42.857 0.00 0.00 0.00 4.26
1204 1472 3.748107 GTGTTCAGAGTAAACACGTCG 57.252 47.619 3.66 0.00 44.82 5.12
1210 1478 9.007901 TCCTAGTTAGTAGTGTTCAGAGTAAAC 57.992 37.037 0.00 0.00 0.00 2.01
1231 1499 3.140519 AGGTGTACCCCTGATACTCCTAG 59.859 52.174 0.00 0.00 42.17 3.02
1240 1508 4.886163 TCATATTGTAGGTGTACCCCTGA 58.114 43.478 7.22 0.00 35.97 3.86
1252 1640 8.196802 TGAAACTCACCGAAATCATATTGTAG 57.803 34.615 0.00 0.00 0.00 2.74
1253 1641 8.554835 TTGAAACTCACCGAAATCATATTGTA 57.445 30.769 0.00 0.00 0.00 2.41
1257 1645 5.647658 TGCTTGAAACTCACCGAAATCATAT 59.352 36.000 0.00 0.00 0.00 1.78
1258 1646 5.000591 TGCTTGAAACTCACCGAAATCATA 58.999 37.500 0.00 0.00 0.00 2.15
1260 1648 3.210227 TGCTTGAAACTCACCGAAATCA 58.790 40.909 0.00 0.00 0.00 2.57
1304 1692 5.121454 ACGCAAACAACACATCACAAATTTT 59.879 32.000 0.00 0.00 0.00 1.82
1342 1733 5.186198 ACCATGGATTCTTACTACTGCAAC 58.814 41.667 21.47 0.00 0.00 4.17
1371 1762 2.032620 GAAGAGGCGGGATACAGAGAA 58.967 52.381 0.00 0.00 39.74 2.87
1383 1774 2.098607 ACATTTGCATGATGAAGAGGCG 59.901 45.455 15.21 0.00 34.11 5.52
1401 1792 9.638239 AGCAAAATTCATCGTACAAATTTACAT 57.362 25.926 0.00 0.00 32.84 2.29
1402 1793 8.910666 CAGCAAAATTCATCGTACAAATTTACA 58.089 29.630 0.00 0.00 32.84 2.41
1403 1794 9.123709 TCAGCAAAATTCATCGTACAAATTTAC 57.876 29.630 0.00 0.00 32.84 2.01
1406 1797 8.761575 ATTCAGCAAAATTCATCGTACAAATT 57.238 26.923 0.00 0.00 0.00 1.82
1449 2021 3.828451 ACCACTGTCCAATCTCCATTTTG 59.172 43.478 0.00 0.00 0.00 2.44
1490 2062 9.699410 TCTCATTCCCTGTAACAATTCATTATT 57.301 29.630 0.00 0.00 0.00 1.40
1491 2063 9.125026 GTCTCATTCCCTGTAACAATTCATTAT 57.875 33.333 0.00 0.00 0.00 1.28
1563 2139 2.156917 TGGTACACTGTCGTCAGGTAG 58.843 52.381 14.13 6.13 45.14 3.18
1659 2235 2.111384 AGGTAGGTGTCGCTGATGAAT 58.889 47.619 0.00 0.00 0.00 2.57
3172 3771 7.977818 TGTCCATTAATCTACCAATCTATGCT 58.022 34.615 0.00 0.00 0.00 3.79
3211 3813 6.252233 TGTTGATTCCCAAGGATCAACAATA 58.748 36.000 23.36 9.45 45.41 1.90
3285 3893 3.525537 GCACTCATACTACACATGTGCT 58.474 45.455 25.68 14.82 43.79 4.40
3287 3895 3.769536 TCGCACTCATACTACACATGTG 58.230 45.455 24.25 24.25 0.00 3.21
3296 3906 3.801638 GCATTCCTCATCGCACTCATACT 60.802 47.826 0.00 0.00 0.00 2.12
3306 3916 1.202734 ACTCCCATGCATTCCTCATCG 60.203 52.381 0.00 0.00 0.00 3.84
3322 3947 1.869767 GTGCTGTGCATATGCTACTCC 59.130 52.381 27.13 16.83 41.91 3.85
3331 3956 1.167851 GCTTTGAGGTGCTGTGCATA 58.832 50.000 0.00 0.00 41.91 3.14
3416 4084 1.549170 CAACTGGGCGGAAGTAGTAGT 59.451 52.381 0.00 0.00 0.00 2.73
3445 4113 9.515226 GATTGGCCTATCTATTTATTGTTGGTA 57.485 33.333 18.62 0.00 0.00 3.25
3451 4119 9.307121 CGAGTAGATTGGCCTATCTATTTATTG 57.693 37.037 31.06 19.81 38.87 1.90
3453 4121 8.596781 ACGAGTAGATTGGCCTATCTATTTAT 57.403 34.615 31.06 20.47 38.87 1.40
3455 4123 6.493802 TGACGAGTAGATTGGCCTATCTATTT 59.506 38.462 31.06 23.94 38.87 1.40
3456 4124 6.010850 TGACGAGTAGATTGGCCTATCTATT 58.989 40.000 31.06 28.04 38.87 1.73
3457 4125 5.571285 TGACGAGTAGATTGGCCTATCTAT 58.429 41.667 31.06 22.05 38.87 1.98
3458 4126 4.981812 TGACGAGTAGATTGGCCTATCTA 58.018 43.478 26.87 26.87 36.34 1.98
3460 4128 4.585955 TTGACGAGTAGATTGGCCTATC 57.414 45.455 18.29 18.29 0.00 2.08
3461 4129 5.552870 ATTTGACGAGTAGATTGGCCTAT 57.447 39.130 3.32 0.02 0.00 2.57
3500 6401 7.595819 TCCCTGCCGATAATTTATTTGATTT 57.404 32.000 0.00 0.00 0.00 2.17
3521 6422 2.821969 GTGTAATCCATGCATCCATCCC 59.178 50.000 0.00 0.00 0.00 3.85
3712 6645 2.415426 GGCTCTAGTCAGCTCCGC 59.585 66.667 3.67 0.00 39.58 5.54
3782 6728 4.069304 CACTCCACCGTTCCTTGATTTAA 58.931 43.478 0.00 0.00 0.00 1.52
3932 6879 1.278172 CCTACGCCGATGATTGCTCG 61.278 60.000 0.00 0.00 35.92 5.03
3944 6891 1.090052 GCATCAAGACACCCTACGCC 61.090 60.000 0.00 0.00 0.00 5.68
3954 6901 4.340894 TTCGTTAAGCATGCATCAAGAC 57.659 40.909 21.98 8.34 0.00 3.01
3955 6902 5.369685 TTTTCGTTAAGCATGCATCAAGA 57.630 34.783 21.98 10.63 0.00 3.02
3956 6903 4.560035 CCTTTTCGTTAAGCATGCATCAAG 59.440 41.667 21.98 8.28 0.00 3.02
3957 6904 4.217334 TCCTTTTCGTTAAGCATGCATCAA 59.783 37.500 21.98 7.51 0.00 2.57
3958 6905 3.755905 TCCTTTTCGTTAAGCATGCATCA 59.244 39.130 21.98 0.00 0.00 3.07
3959 6906 4.346129 CTCCTTTTCGTTAAGCATGCATC 58.654 43.478 21.98 5.94 0.00 3.91
3960 6907 3.129287 CCTCCTTTTCGTTAAGCATGCAT 59.871 43.478 21.98 11.22 0.00 3.96
3961 6908 2.487762 CCTCCTTTTCGTTAAGCATGCA 59.512 45.455 21.98 0.00 0.00 3.96
3962 6909 2.488153 ACCTCCTTTTCGTTAAGCATGC 59.512 45.455 10.51 10.51 0.00 4.06
3963 6910 4.766404 AACCTCCTTTTCGTTAAGCATG 57.234 40.909 0.00 0.00 0.00 4.06
4061 7309 5.496133 AGACGTAGGATGTGTACATGTAC 57.504 43.478 25.99 25.99 36.57 2.90
4081 7329 2.987232 TCTGCGAGTAAGTCAGCTAGA 58.013 47.619 0.00 0.00 0.00 2.43
4082 7330 3.980646 ATCTGCGAGTAAGTCAGCTAG 57.019 47.619 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.