Multiple sequence alignment - TraesCS2D01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G043700 chr2D 100.000 4758 0 0 419 5176 15734798 15730041 0.000000e+00 8787.0
1 TraesCS2D01G043700 chr2D 100.000 191 0 0 1 191 15735216 15735026 2.290000e-93 353.0
2 TraesCS2D01G043700 chr2D 92.800 125 8 1 3252 3376 607600291 607600168 4.120000e-41 180.0
3 TraesCS2D01G043700 chr2A 91.080 4249 181 80 419 4597 17742190 17738070 0.000000e+00 5565.0
4 TraesCS2D01G043700 chr2A 89.593 615 15 20 4594 5176 17738040 17737443 0.000000e+00 736.0
5 TraesCS2D01G043700 chr2B 92.267 2431 102 34 2131 4490 27898287 27895872 0.000000e+00 3369.0
6 TraesCS2D01G043700 chr2B 85.509 973 69 38 499 1438 27899794 27898861 0.000000e+00 950.0
7 TraesCS2D01G043700 chr2B 90.345 145 11 3 1898 2039 27898483 27898339 2.460000e-43 187.0
8 TraesCS2D01G043700 chr2B 74.862 545 35 44 4594 5040 27895632 27895092 2.500000e-33 154.0
9 TraesCS2D01G043700 chr5B 79.842 506 25 36 4594 5039 325918137 325918625 1.090000e-76 298.0
10 TraesCS2D01G043700 chr5B 88.793 116 12 1 3848 3962 319313590 319313705 1.940000e-29 141.0
11 TraesCS2D01G043700 chr5B 84.848 99 8 6 2491 2589 13377725 13377816 5.520000e-15 93.5
12 TraesCS2D01G043700 chr1B 88.745 231 22 2 3146 3376 83213094 83212868 3.950000e-71 279.0
13 TraesCS2D01G043700 chr1B 83.750 320 23 11 1861 2166 50129208 50128904 5.110000e-70 276.0
14 TraesCS2D01G043700 chr1B 78.804 368 34 24 1467 1828 50129538 50129209 1.890000e-49 207.0
15 TraesCS2D01G043700 chr1B 95.506 89 4 0 3010 3098 83213183 83213095 5.400000e-30 143.0
16 TraesCS2D01G043700 chr1B 90.654 107 6 4 1320 1424 50129639 50129535 6.990000e-29 139.0
17 TraesCS2D01G043700 chr1B 91.935 62 1 1 4134 4195 83212672 83212615 3.320000e-12 84.2
18 TraesCS2D01G043700 chrUn 93.333 165 8 3 2 164 171049329 171049492 1.860000e-59 241.0
19 TraesCS2D01G043700 chrUn 92.683 164 11 1 2 164 189398084 189398247 8.660000e-58 235.0
20 TraesCS2D01G043700 chrUn 92.683 164 11 1 2 164 413475982 413476145 8.660000e-58 235.0
21 TraesCS2D01G043700 chr7D 92.683 164 11 1 2 164 203505594 203505757 8.660000e-58 235.0
22 TraesCS2D01G043700 chr7D 91.489 47 4 0 3058 3104 523826456 523826502 1.200000e-06 65.8
23 TraesCS2D01G043700 chr6D 92.683 164 11 1 2 164 124523124 124523287 8.660000e-58 235.0
24 TraesCS2D01G043700 chr4D 92.683 164 11 1 2 164 123418423 123418586 8.660000e-58 235.0
25 TraesCS2D01G043700 chr4D 92.683 164 11 1 2 164 398041321 398041158 8.660000e-58 235.0
26 TraesCS2D01G043700 chr4A 92.683 164 11 1 2 164 67581988 67581825 8.660000e-58 235.0
27 TraesCS2D01G043700 chr1D 92.683 164 11 1 2 164 185774997 185775160 8.660000e-58 235.0
28 TraesCS2D01G043700 chr5A 92.683 123 9 0 3826 3948 367753951 367754073 1.480000e-40 178.0
29 TraesCS2D01G043700 chr5A 92.000 125 10 0 3824 3948 367753838 367753962 5.330000e-40 176.0
30 TraesCS2D01G043700 chr3B 82.667 150 22 3 3061 3206 127309194 127309343 4.210000e-26 130.0
31 TraesCS2D01G043700 chr3B 92.000 50 4 0 2884 2933 143573202 143573153 2.590000e-08 71.3
32 TraesCS2D01G043700 chr3D 95.455 44 2 0 2884 2927 92868702 92868745 2.590000e-08 71.3
33 TraesCS2D01G043700 chr3D 95.455 44 2 0 2884 2927 92880261 92880304 2.590000e-08 71.3
34 TraesCS2D01G043700 chr3D 100.000 28 0 0 1143 1170 318833 318860 9.000000e-03 52.8
35 TraesCS2D01G043700 chr3A 100.000 28 0 0 1143 1170 9299640 9299613 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G043700 chr2D 15730041 15735216 5175 True 4570.000000 8787 100.000000 1 5176 2 chr2D.!!$R2 5175
1 TraesCS2D01G043700 chr2A 17737443 17742190 4747 True 3150.500000 5565 90.336500 419 5176 2 chr2A.!!$R1 4757
2 TraesCS2D01G043700 chr2B 27895092 27899794 4702 True 1165.000000 3369 85.745750 499 5040 4 chr2B.!!$R1 4541
3 TraesCS2D01G043700 chr1B 50128904 50129639 735 True 207.333333 276 84.402667 1320 2166 3 chr1B.!!$R1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 698 0.031515 ACCCCCTATCACATGACGGA 60.032 55.0 0.00 0.0 0.00 4.69 F
1890 1979 0.178975 ATTGTTCCCACGGAAGCCAA 60.179 50.0 0.00 0.0 42.88 4.52 F
2102 2221 0.249911 CTTCGATTCGACCCCATCCC 60.250 60.0 8.55 0.0 34.89 3.85 F
3305 3458 1.635817 CCCACGTGGAGATCCCCATT 61.636 60.0 36.07 0.0 38.66 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2202 0.249911 GGGATGGGGTCGAATCGAAG 60.250 60.000 7.01 0.00 37.72 3.79 R
3413 3575 1.212751 CATGACCACGCTCACGAGA 59.787 57.895 0.00 0.00 43.93 4.04 R
3467 3629 1.585521 GTACACCGCCGTGATCTCG 60.586 63.158 12.29 10.15 43.14 4.04 R
4301 4484 0.107312 AATGGCAGCAGCACCTCTAG 60.107 55.000 2.65 0.00 44.61 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.537015 GTCCAGAAAAAGATCCAAACACG 58.463 43.478 0.00 0.00 0.00 4.49
23 24 4.036380 GTCCAGAAAAAGATCCAAACACGT 59.964 41.667 0.00 0.00 0.00 4.49
24 25 5.237779 GTCCAGAAAAAGATCCAAACACGTA 59.762 40.000 0.00 0.00 0.00 3.57
25 26 5.823570 TCCAGAAAAAGATCCAAACACGTAA 59.176 36.000 0.00 0.00 0.00 3.18
27 28 6.017440 CCAGAAAAAGATCCAAACACGTAAGA 60.017 38.462 0.00 0.00 43.62 2.10
28 29 7.414436 CAGAAAAAGATCCAAACACGTAAGAA 58.586 34.615 0.00 0.00 43.62 2.52
29 30 8.076178 CAGAAAAAGATCCAAACACGTAAGAAT 58.924 33.333 0.00 0.00 43.62 2.40
30 31 8.290325 AGAAAAAGATCCAAACACGTAAGAATC 58.710 33.333 0.00 0.00 43.62 2.52
31 32 7.745620 AAAAGATCCAAACACGTAAGAATCT 57.254 32.000 0.00 0.00 43.62 2.40
32 33 8.842358 AAAAGATCCAAACACGTAAGAATCTA 57.158 30.769 0.00 0.00 43.62 1.98
33 34 7.829378 AAGATCCAAACACGTAAGAATCTAC 57.171 36.000 0.00 0.00 43.62 2.59
34 35 6.338937 AGATCCAAACACGTAAGAATCTACC 58.661 40.000 0.00 0.00 43.62 3.18
35 36 5.733620 TCCAAACACGTAAGAATCTACCT 57.266 39.130 0.00 0.00 43.62 3.08
36 37 6.105397 TCCAAACACGTAAGAATCTACCTT 57.895 37.500 0.00 0.00 43.62 3.50
37 38 7.230849 TCCAAACACGTAAGAATCTACCTTA 57.769 36.000 0.00 0.00 43.62 2.69
38 39 7.669427 TCCAAACACGTAAGAATCTACCTTAA 58.331 34.615 0.00 0.00 43.62 1.85
39 40 8.149647 TCCAAACACGTAAGAATCTACCTTAAA 58.850 33.333 0.00 0.00 43.62 1.52
40 41 8.440833 CCAAACACGTAAGAATCTACCTTAAAG 58.559 37.037 0.00 0.00 43.62 1.85
41 42 7.592439 AACACGTAAGAATCTACCTTAAAGC 57.408 36.000 0.00 0.00 43.62 3.51
42 43 6.694447 ACACGTAAGAATCTACCTTAAAGCA 58.306 36.000 0.00 0.00 43.62 3.91
43 44 7.156673 ACACGTAAGAATCTACCTTAAAGCAA 58.843 34.615 0.00 0.00 43.62 3.91
44 45 7.331193 ACACGTAAGAATCTACCTTAAAGCAAG 59.669 37.037 0.00 0.00 43.62 4.01
57 58 6.541111 CTTAAAGCAAGGTTTCTACTCGTT 57.459 37.500 0.00 0.00 0.00 3.85
58 59 7.647907 CTTAAAGCAAGGTTTCTACTCGTTA 57.352 36.000 0.00 0.00 0.00 3.18
59 60 8.252964 CTTAAAGCAAGGTTTCTACTCGTTAT 57.747 34.615 0.00 0.00 0.00 1.89
60 61 8.611654 TTAAAGCAAGGTTTCTACTCGTTATT 57.388 30.769 0.00 0.00 0.00 1.40
61 62 6.481954 AAGCAAGGTTTCTACTCGTTATTG 57.518 37.500 0.00 0.00 0.00 1.90
62 63 4.392138 AGCAAGGTTTCTACTCGTTATTGC 59.608 41.667 0.00 0.00 40.50 3.56
63 64 4.392138 GCAAGGTTTCTACTCGTTATTGCT 59.608 41.667 0.00 0.00 37.95 3.91
64 65 5.106673 GCAAGGTTTCTACTCGTTATTGCTT 60.107 40.000 0.00 0.00 37.95 3.91
65 66 6.534934 CAAGGTTTCTACTCGTTATTGCTTC 58.465 40.000 0.00 0.00 0.00 3.86
66 67 5.176592 AGGTTTCTACTCGTTATTGCTTCC 58.823 41.667 0.00 0.00 0.00 3.46
67 68 4.933400 GGTTTCTACTCGTTATTGCTTCCA 59.067 41.667 0.00 0.00 0.00 3.53
68 69 5.163884 GGTTTCTACTCGTTATTGCTTCCAC 60.164 44.000 0.00 0.00 0.00 4.02
69 70 4.119442 TCTACTCGTTATTGCTTCCACC 57.881 45.455 0.00 0.00 0.00 4.61
70 71 2.109425 ACTCGTTATTGCTTCCACCC 57.891 50.000 0.00 0.00 0.00 4.61
71 72 1.628846 ACTCGTTATTGCTTCCACCCT 59.371 47.619 0.00 0.00 0.00 4.34
72 73 2.835764 ACTCGTTATTGCTTCCACCCTA 59.164 45.455 0.00 0.00 0.00 3.53
73 74 3.195661 CTCGTTATTGCTTCCACCCTAC 58.804 50.000 0.00 0.00 0.00 3.18
74 75 2.835764 TCGTTATTGCTTCCACCCTACT 59.164 45.455 0.00 0.00 0.00 2.57
75 76 2.936498 CGTTATTGCTTCCACCCTACTG 59.064 50.000 0.00 0.00 0.00 2.74
76 77 3.369052 CGTTATTGCTTCCACCCTACTGA 60.369 47.826 0.00 0.00 0.00 3.41
77 78 4.683400 CGTTATTGCTTCCACCCTACTGAT 60.683 45.833 0.00 0.00 0.00 2.90
78 79 2.787473 TTGCTTCCACCCTACTGATG 57.213 50.000 0.00 0.00 0.00 3.07
79 80 1.951209 TGCTTCCACCCTACTGATGA 58.049 50.000 0.00 0.00 0.00 2.92
80 81 1.555075 TGCTTCCACCCTACTGATGAC 59.445 52.381 0.00 0.00 0.00 3.06
81 82 1.555075 GCTTCCACCCTACTGATGACA 59.445 52.381 0.00 0.00 0.00 3.58
83 84 1.195115 TCCACCCTACTGATGACAGC 58.805 55.000 0.00 0.00 46.95 4.40
84 85 1.198713 CCACCCTACTGATGACAGCT 58.801 55.000 0.00 0.00 46.95 4.24
85 86 2.024369 TCCACCCTACTGATGACAGCTA 60.024 50.000 0.00 0.00 46.95 3.32
86 87 2.766263 CCACCCTACTGATGACAGCTAA 59.234 50.000 0.00 0.00 46.95 3.09
87 88 3.389329 CCACCCTACTGATGACAGCTAAT 59.611 47.826 0.00 0.00 46.95 1.73
88 89 4.375272 CACCCTACTGATGACAGCTAATG 58.625 47.826 0.00 0.00 46.95 1.90
89 90 4.033709 ACCCTACTGATGACAGCTAATGT 58.966 43.478 0.00 0.00 46.95 2.71
90 91 4.471386 ACCCTACTGATGACAGCTAATGTT 59.529 41.667 0.00 0.00 46.95 2.71
91 92 5.661312 ACCCTACTGATGACAGCTAATGTTA 59.339 40.000 0.00 0.00 46.95 2.41
92 93 5.986135 CCCTACTGATGACAGCTAATGTTAC 59.014 44.000 0.00 0.00 46.95 2.50
93 94 6.183360 CCCTACTGATGACAGCTAATGTTACT 60.183 42.308 0.00 0.00 46.95 2.24
94 95 7.014326 CCCTACTGATGACAGCTAATGTTACTA 59.986 40.741 0.00 0.00 46.95 1.82
95 96 8.414003 CCTACTGATGACAGCTAATGTTACTAA 58.586 37.037 0.00 0.00 46.95 2.24
96 97 9.803315 CTACTGATGACAGCTAATGTTACTAAA 57.197 33.333 0.00 0.00 46.95 1.85
98 99 9.155975 ACTGATGACAGCTAATGTTACTAAAAG 57.844 33.333 0.00 0.00 46.95 2.27
99 100 7.974675 TGATGACAGCTAATGTTACTAAAAGC 58.025 34.615 0.00 0.00 44.17 3.51
100 101 7.824289 TGATGACAGCTAATGTTACTAAAAGCT 59.176 33.333 0.00 0.00 44.17 3.74
101 102 7.979444 TGACAGCTAATGTTACTAAAAGCTT 57.021 32.000 0.00 0.00 44.17 3.74
102 103 9.667107 ATGACAGCTAATGTTACTAAAAGCTTA 57.333 29.630 0.00 0.00 44.17 3.09
103 104 9.151471 TGACAGCTAATGTTACTAAAAGCTTAG 57.849 33.333 0.00 0.00 44.17 2.18
104 105 9.367444 GACAGCTAATGTTACTAAAAGCTTAGA 57.633 33.333 0.00 0.00 44.17 2.10
105 106 9.892130 ACAGCTAATGTTACTAAAAGCTTAGAT 57.108 29.630 0.00 0.00 39.96 1.98
116 117 8.262715 ACTAAAAGCTTAGATGAAGAAAGAGC 57.737 34.615 0.00 0.00 38.35 4.09
117 118 8.100164 ACTAAAAGCTTAGATGAAGAAAGAGCT 58.900 33.333 0.00 0.00 40.41 4.09
119 120 6.983474 AAGCTTAGATGAAGAAAGAGCTTC 57.017 37.500 0.00 0.00 43.26 3.86
120 121 6.298441 AGCTTAGATGAAGAAAGAGCTTCT 57.702 37.500 0.00 0.00 46.92 2.85
121 122 6.108015 AGCTTAGATGAAGAAAGAGCTTCTG 58.892 40.000 0.00 0.00 44.00 3.02
122 123 6.070881 AGCTTAGATGAAGAAAGAGCTTCTGA 60.071 38.462 0.00 0.00 44.00 3.27
123 124 6.256321 GCTTAGATGAAGAAAGAGCTTCTGAG 59.744 42.308 0.00 0.00 44.00 3.35
124 125 4.506758 AGATGAAGAAAGAGCTTCTGAGC 58.493 43.478 0.00 0.00 44.00 4.26
125 126 8.830328 CTTAGATGAAGAAAGAGCTTCTGAGCG 61.830 44.444 0.00 0.00 44.00 5.03
140 141 2.985847 GCGAGGGCTTGTTGGCTT 60.986 61.111 0.00 0.00 41.48 4.35
141 142 2.564721 GCGAGGGCTTGTTGGCTTT 61.565 57.895 0.00 0.00 41.48 3.51
142 143 1.286880 CGAGGGCTTGTTGGCTTTG 59.713 57.895 0.00 0.00 41.48 2.77
143 144 1.005748 GAGGGCTTGTTGGCTTTGC 60.006 57.895 0.00 0.00 41.48 3.68
144 145 1.458209 AGGGCTTGTTGGCTTTGCT 60.458 52.632 0.00 0.00 41.48 3.91
145 146 1.050421 AGGGCTTGTTGGCTTTGCTT 61.050 50.000 0.00 0.00 41.48 3.91
146 147 0.881600 GGGCTTGTTGGCTTTGCTTG 60.882 55.000 0.00 0.00 41.48 4.01
147 148 0.179076 GGCTTGTTGGCTTTGCTTGT 60.179 50.000 0.00 0.00 38.32 3.16
148 149 1.655484 GCTTGTTGGCTTTGCTTGTT 58.345 45.000 0.00 0.00 0.00 2.83
149 150 1.328374 GCTTGTTGGCTTTGCTTGTTG 59.672 47.619 0.00 0.00 0.00 3.33
150 151 1.935199 CTTGTTGGCTTTGCTTGTTGG 59.065 47.619 0.00 0.00 0.00 3.77
151 152 0.461693 TGTTGGCTTTGCTTGTTGGC 60.462 50.000 0.00 0.00 0.00 4.52
152 153 1.227205 TTGGCTTTGCTTGTTGGCG 60.227 52.632 0.00 0.00 34.52 5.69
153 154 1.954362 TTGGCTTTGCTTGTTGGCGT 61.954 50.000 0.00 0.00 34.52 5.68
154 155 1.950630 GGCTTTGCTTGTTGGCGTG 60.951 57.895 0.00 0.00 34.52 5.34
155 156 1.950630 GCTTTGCTTGTTGGCGTGG 60.951 57.895 0.00 0.00 34.52 4.94
156 157 1.732917 CTTTGCTTGTTGGCGTGGA 59.267 52.632 0.00 0.00 34.52 4.02
157 158 0.314935 CTTTGCTTGTTGGCGTGGAT 59.685 50.000 0.00 0.00 34.52 3.41
158 159 1.539388 CTTTGCTTGTTGGCGTGGATA 59.461 47.619 0.00 0.00 34.52 2.59
159 160 1.610363 TTGCTTGTTGGCGTGGATAA 58.390 45.000 0.00 0.00 34.52 1.75
160 161 1.832883 TGCTTGTTGGCGTGGATAAT 58.167 45.000 0.00 0.00 34.52 1.28
161 162 1.742831 TGCTTGTTGGCGTGGATAATC 59.257 47.619 0.00 0.00 34.52 1.75
162 163 2.017049 GCTTGTTGGCGTGGATAATCT 58.983 47.619 0.00 0.00 0.00 2.40
163 164 2.423538 GCTTGTTGGCGTGGATAATCTT 59.576 45.455 0.00 0.00 0.00 2.40
164 165 3.487544 GCTTGTTGGCGTGGATAATCTTC 60.488 47.826 0.00 0.00 0.00 2.87
165 166 2.276201 TGTTGGCGTGGATAATCTTCG 58.724 47.619 0.00 0.00 0.00 3.79
166 167 2.277084 GTTGGCGTGGATAATCTTCGT 58.723 47.619 0.00 0.00 0.00 3.85
167 168 2.218953 TGGCGTGGATAATCTTCGTC 57.781 50.000 0.00 0.00 0.00 4.20
168 169 1.129326 GGCGTGGATAATCTTCGTCG 58.871 55.000 0.00 0.00 0.00 5.12
169 170 1.268896 GGCGTGGATAATCTTCGTCGA 60.269 52.381 0.00 0.00 0.00 4.20
170 171 1.779724 GCGTGGATAATCTTCGTCGAC 59.220 52.381 5.18 5.18 0.00 4.20
171 172 2.793585 GCGTGGATAATCTTCGTCGACA 60.794 50.000 17.16 0.00 0.00 4.35
172 173 3.431856 CGTGGATAATCTTCGTCGACAA 58.568 45.455 17.16 8.19 0.00 3.18
173 174 3.482472 CGTGGATAATCTTCGTCGACAAG 59.518 47.826 17.16 16.90 0.00 3.16
174 175 4.669318 GTGGATAATCTTCGTCGACAAGA 58.331 43.478 23.37 23.37 34.37 3.02
175 176 4.735822 GTGGATAATCTTCGTCGACAAGAG 59.264 45.833 24.46 15.88 33.36 2.85
176 177 4.638865 TGGATAATCTTCGTCGACAAGAGA 59.361 41.667 24.46 19.38 33.36 3.10
177 178 4.971220 GGATAATCTTCGTCGACAAGAGAC 59.029 45.833 24.46 17.66 33.36 3.36
178 179 5.220892 GGATAATCTTCGTCGACAAGAGACT 60.221 44.000 24.46 14.19 36.53 3.24
179 180 4.506886 AATCTTCGTCGACAAGAGACTT 57.493 40.909 24.46 16.34 36.53 3.01
180 181 3.269486 TCTTCGTCGACAAGAGACTTG 57.731 47.619 17.16 9.51 36.53 3.16
181 182 2.617308 TCTTCGTCGACAAGAGACTTGT 59.383 45.455 17.16 15.46 36.53 3.16
182 183 3.811497 TCTTCGTCGACAAGAGACTTGTA 59.189 43.478 17.16 0.90 36.53 2.41
183 184 4.454847 TCTTCGTCGACAAGAGACTTGTAT 59.545 41.667 17.16 0.00 36.53 2.29
184 185 4.761235 TCGTCGACAAGAGACTTGTATT 57.239 40.909 17.16 0.00 36.53 1.89
185 186 4.473199 TCGTCGACAAGAGACTTGTATTG 58.527 43.478 17.16 9.77 36.53 1.90
186 187 4.214758 TCGTCGACAAGAGACTTGTATTGA 59.785 41.667 17.16 11.51 36.53 2.57
187 188 4.915667 CGTCGACAAGAGACTTGTATTGAA 59.084 41.667 17.16 0.30 36.53 2.69
188 189 5.401376 CGTCGACAAGAGACTTGTATTGAAA 59.599 40.000 17.16 0.00 36.53 2.69
189 190 6.074516 CGTCGACAAGAGACTTGTATTGAAAA 60.075 38.462 17.16 0.00 36.53 2.29
190 191 7.064064 GTCGACAAGAGACTTGTATTGAAAAC 58.936 38.462 11.55 2.49 35.84 2.43
463 464 3.060736 GGTTTCACCCTCTTCTTCTCC 57.939 52.381 0.00 0.00 30.04 3.71
468 469 2.158158 TCACCCTCTTCTTCTCCTCCAA 60.158 50.000 0.00 0.00 0.00 3.53
485 486 6.731467 TCCTCCAAGGAGCAAAAATAATACT 58.269 36.000 10.68 0.00 40.06 2.12
486 487 6.828785 TCCTCCAAGGAGCAAAAATAATACTC 59.171 38.462 10.68 0.00 40.06 2.59
512 513 9.828852 CACTTACTAGGCTAATCTAATAACGAG 57.171 37.037 0.00 0.00 0.00 4.18
513 514 9.571816 ACTTACTAGGCTAATCTAATAACGAGT 57.428 33.333 0.00 0.00 0.00 4.18
544 548 3.334691 TGATTACACAAAAGAGGAGGCG 58.665 45.455 0.00 0.00 0.00 5.52
571 575 5.811613 TGTTCAAAAGAGGAGCAACAAATTG 59.188 36.000 0.00 0.00 38.99 2.32
630 637 1.004080 TGGCAAGTGAGCTCAGAGC 60.004 57.895 18.89 20.10 42.84 4.09
667 675 0.853586 TAATTGGCCAACCCCTCCCT 60.854 55.000 23.27 0.00 33.59 4.20
668 676 2.168272 AATTGGCCAACCCCTCCCTC 62.168 60.000 23.27 0.00 33.59 4.30
689 697 0.106708 CACCCCCTATCACATGACGG 59.893 60.000 0.00 0.00 0.00 4.79
690 698 0.031515 ACCCCCTATCACATGACGGA 60.032 55.000 0.00 0.00 0.00 4.69
691 699 1.128200 CCCCCTATCACATGACGGAA 58.872 55.000 0.00 0.00 0.00 4.30
692 700 1.070758 CCCCCTATCACATGACGGAAG 59.929 57.143 0.00 0.00 0.00 3.46
693 701 1.541233 CCCCTATCACATGACGGAAGC 60.541 57.143 0.00 0.00 0.00 3.86
710 740 2.792599 CGGAAGCTCGCTCGTAGT 59.207 61.111 0.00 0.00 0.00 2.73
712 742 1.297745 GGAAGCTCGCTCGTAGTCG 60.298 63.158 0.00 0.00 38.55 4.18
713 743 1.424635 GAAGCTCGCTCGTAGTCGT 59.575 57.895 0.00 0.00 38.33 4.34
714 744 0.649475 GAAGCTCGCTCGTAGTCGTA 59.351 55.000 0.00 0.00 38.33 3.43
715 745 0.651551 AAGCTCGCTCGTAGTCGTAG 59.348 55.000 0.00 0.00 38.33 3.51
716 746 1.152989 AGCTCGCTCGTAGTCGTAGG 61.153 60.000 0.00 0.00 38.33 3.18
719 749 2.466982 CGCTCGTAGTCGTAGGCCA 61.467 63.158 5.01 0.00 38.33 5.36
720 750 1.355916 GCTCGTAGTCGTAGGCCAG 59.644 63.158 5.01 0.00 38.33 4.85
723 753 2.547640 TCGTAGTCGTAGGCCAGCCT 62.548 60.000 16.82 16.82 41.82 4.58
724 754 0.816825 CGTAGTCGTAGGCCAGCCTA 60.817 60.000 14.48 14.48 46.14 3.93
747 777 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
849 888 1.376609 GACGGATTCATGGTGGTGGC 61.377 60.000 0.00 0.00 0.00 5.01
944 991 2.346541 CGGAGACTCTGAGCCAGCA 61.347 63.158 5.24 0.00 0.00 4.41
947 994 0.607620 GAGACTCTGAGCCAGCAAGT 59.392 55.000 4.19 0.00 0.00 3.16
948 995 1.001860 GAGACTCTGAGCCAGCAAGTT 59.998 52.381 4.19 0.00 0.00 2.66
955 1002 1.338484 TGAGCCAGCAAGTTAGAGCAG 60.338 52.381 0.00 0.00 0.00 4.24
956 1003 0.676151 AGCCAGCAAGTTAGAGCAGC 60.676 55.000 0.00 0.00 33.95 5.25
957 1004 0.957395 GCCAGCAAGTTAGAGCAGCA 60.957 55.000 0.00 0.00 33.94 4.41
958 1005 1.085091 CCAGCAAGTTAGAGCAGCAG 58.915 55.000 0.00 0.00 0.00 4.24
959 1006 1.085091 CAGCAAGTTAGAGCAGCAGG 58.915 55.000 0.00 0.00 0.00 4.85
962 1014 0.326264 CAAGTTAGAGCAGCAGGGGT 59.674 55.000 0.00 0.00 0.00 4.95
987 1039 4.208686 GCGGCGGTGGTAGAGAGG 62.209 72.222 9.78 0.00 0.00 3.69
1308 1369 2.516460 CTGCTGCAGGCCATCTCC 60.516 66.667 21.71 0.00 40.92 3.71
1380 1441 1.196104 TCCTCCCCACCAAGGTAACG 61.196 60.000 0.00 0.00 46.39 3.18
1383 1444 0.767446 TCCCCACCAAGGTAACGGAA 60.767 55.000 0.00 0.00 46.39 4.30
1438 1504 0.324830 CCCCGTCTTCTTCCTCCTCT 60.325 60.000 0.00 0.00 0.00 3.69
1461 1527 3.091529 GTCCCGAGACGAGACGAG 58.908 66.667 0.00 0.00 32.18 4.18
1480 1546 1.222115 GGGCGTCCGAATGCAGTATC 61.222 60.000 0.00 0.00 39.30 2.24
1484 1550 2.096713 GCGTCCGAATGCAGTATCATTC 60.097 50.000 0.00 6.45 45.35 2.67
1559 1630 0.547712 TTTCCCAGTGGAGGAGAGGG 60.548 60.000 11.95 0.00 43.07 4.30
1590 1661 1.006878 TGGGGATCAATCATTGCCACA 59.993 47.619 0.00 0.00 0.00 4.17
1655 1726 4.161189 TCCTCTTGAGATTCGATTCTGCTT 59.839 41.667 14.25 0.00 0.00 3.91
1714 1795 3.084786 CCAATCCCCACTTCTCTGTTTC 58.915 50.000 0.00 0.00 0.00 2.78
1738 1819 2.570415 TTCATTCCGTGCCACCTTTA 57.430 45.000 0.00 0.00 0.00 1.85
1745 1826 1.468520 CCGTGCCACCTTTACATCTTG 59.531 52.381 0.00 0.00 0.00 3.02
1828 1912 4.215399 ACACTACAAACAAATCCATGGACG 59.785 41.667 18.99 11.38 0.00 4.79
1838 1922 2.721167 CCATGGACGCCGGAGAGAA 61.721 63.158 13.83 0.00 0.00 2.87
1881 1970 3.399330 TCTTCGAGAACATTGTTCCCAC 58.601 45.455 22.70 14.57 0.00 4.61
1890 1979 0.178975 ATTGTTCCCACGGAAGCCAA 60.179 50.000 0.00 0.00 42.88 4.52
1912 2001 6.379133 CCAAGGAAAGAATCTCATCATTTGGA 59.621 38.462 17.10 0.00 33.47 3.53
1918 2013 5.131784 AGAATCTCATCATTTGGAGGAAGC 58.868 41.667 0.00 0.00 35.61 3.86
1920 2015 4.305539 TCTCATCATTTGGAGGAAGCAA 57.694 40.909 0.00 0.00 35.61 3.91
1952 2054 2.096496 GCAATCGTGTGATGGAAGAAGG 59.904 50.000 0.00 0.00 34.24 3.46
2013 2118 3.778954 AGTGAAAGAAAGAGTGGGGAG 57.221 47.619 0.00 0.00 0.00 4.30
2049 2165 2.232452 CGGATCGGATCAGCTTTATCCT 59.768 50.000 18.99 5.20 40.74 3.24
2074 2193 1.466167 CTGATTTGAGCAACCGTCCAG 59.534 52.381 0.00 0.00 0.00 3.86
2082 2201 1.003580 AGCAACCGTCCAGTGATTCAT 59.996 47.619 0.00 0.00 0.00 2.57
2083 2202 1.398390 GCAACCGTCCAGTGATTCATC 59.602 52.381 0.00 0.00 0.00 2.92
2084 2203 2.936993 GCAACCGTCCAGTGATTCATCT 60.937 50.000 0.00 0.00 0.00 2.90
2085 2204 3.338249 CAACCGTCCAGTGATTCATCTT 58.662 45.455 0.00 0.00 0.00 2.40
2086 2205 3.252974 ACCGTCCAGTGATTCATCTTC 57.747 47.619 0.00 0.00 0.00 2.87
2087 2206 2.196749 CCGTCCAGTGATTCATCTTCG 58.803 52.381 0.00 0.00 0.00 3.79
2093 2212 4.097892 TCCAGTGATTCATCTTCGATTCGA 59.902 41.667 4.29 4.29 0.00 3.71
2094 2213 4.208047 CCAGTGATTCATCTTCGATTCGAC 59.792 45.833 8.55 0.00 34.89 4.20
2095 2214 4.208047 CAGTGATTCATCTTCGATTCGACC 59.792 45.833 8.55 0.00 34.89 4.79
2096 2215 3.491267 GTGATTCATCTTCGATTCGACCC 59.509 47.826 8.55 0.00 34.89 4.46
2097 2216 2.596904 TTCATCTTCGATTCGACCCC 57.403 50.000 8.55 0.00 34.89 4.95
2098 2217 1.480789 TCATCTTCGATTCGACCCCA 58.519 50.000 8.55 0.00 34.89 4.96
2099 2218 2.039418 TCATCTTCGATTCGACCCCAT 58.961 47.619 8.55 0.00 34.89 4.00
2100 2219 2.035961 TCATCTTCGATTCGACCCCATC 59.964 50.000 8.55 0.00 34.89 3.51
2101 2220 0.750850 TCTTCGATTCGACCCCATCC 59.249 55.000 8.55 0.00 34.89 3.51
2102 2221 0.249911 CTTCGATTCGACCCCATCCC 60.250 60.000 8.55 0.00 34.89 3.85
2103 2222 2.023414 TTCGATTCGACCCCATCCCG 62.023 60.000 8.55 0.00 34.89 5.14
2104 2223 2.495409 CGATTCGACCCCATCCCGA 61.495 63.158 0.00 0.00 0.00 5.14
2105 2224 1.816863 CGATTCGACCCCATCCCGAT 61.817 60.000 0.00 0.00 32.07 4.18
2124 2243 4.021894 CCGATAAATCCTACTGCAGCTACT 60.022 45.833 15.27 0.00 0.00 2.57
2141 2260 1.981256 ACTGCCCAAACAGAACGAAT 58.019 45.000 0.00 0.00 40.25 3.34
2209 2341 8.930846 TTCATGGAAAGATTTCTTCTTCTTCT 57.069 30.769 5.37 0.00 44.09 2.85
2210 2342 8.930846 TCATGGAAAGATTTCTTCTTCTTCTT 57.069 30.769 5.37 0.00 44.09 2.52
2211 2343 9.007901 TCATGGAAAGATTTCTTCTTCTTCTTC 57.992 33.333 5.37 0.00 44.09 2.87
2212 2344 9.012161 CATGGAAAGATTTCTTCTTCTTCTTCT 57.988 33.333 5.37 0.00 44.09 2.85
2213 2345 8.986929 TGGAAAGATTTCTTCTTCTTCTTCTT 57.013 30.769 5.37 0.00 44.09 2.52
2214 2346 9.061435 TGGAAAGATTTCTTCTTCTTCTTCTTC 57.939 33.333 5.37 0.00 44.09 2.87
2215 2347 9.283768 GGAAAGATTTCTTCTTCTTCTTCTTCT 57.716 33.333 5.37 0.00 44.09 2.85
2222 2354 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2223 2355 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2224 2356 7.865385 TCTTCTTCTTCTTCTTCTTCTTCTTCG 59.135 37.037 0.00 0.00 0.00 3.79
3305 3458 1.635817 CCCACGTGGAGATCCCCATT 61.636 60.000 36.07 0.00 38.66 3.16
3998 4163 4.752879 ACGCCAACATCCCGGTCG 62.753 66.667 0.00 0.00 0.00 4.79
4001 4166 4.402528 CCAACATCCCGGTCGGCA 62.403 66.667 0.00 0.00 0.00 5.69
4184 4349 4.753877 CGCTTCTGACGACGGCGA 62.754 66.667 22.49 0.00 41.22 5.54
4185 4350 3.173240 GCTTCTGACGACGGCGAC 61.173 66.667 22.49 13.68 41.64 5.19
4214 4379 0.098200 TCGATCTGTAACGAGCACGG 59.902 55.000 8.74 0.00 44.46 4.94
4335 4527 4.808364 GCTGCCATTGTTGTTGTTAAAAGA 59.192 37.500 0.00 0.00 0.00 2.52
4373 4574 5.690464 ACTAGGATCCTCCATGATATTGC 57.310 43.478 20.22 0.00 39.61 3.56
4502 4754 6.351711 CCTCCATGATTGTTCTCTGAAGTAGT 60.352 42.308 0.00 0.00 0.00 2.73
4505 4757 7.397476 TCCATGATTGTTCTCTGAAGTAGTAGT 59.603 37.037 0.00 0.00 0.00 2.73
4519 4837 8.638629 TGAAGTAGTAGTAGAAGAAGAAGCTT 57.361 34.615 0.00 0.00 0.00 3.74
4546 4864 3.305110 CGTTGTTTTGTAACTGCATCCC 58.695 45.455 0.00 0.00 35.24 3.85
4547 4865 3.243234 CGTTGTTTTGTAACTGCATCCCA 60.243 43.478 0.00 0.00 35.24 4.37
4548 4866 4.558496 CGTTGTTTTGTAACTGCATCCCAT 60.558 41.667 0.00 0.00 35.24 4.00
4550 4868 3.509575 TGTTTTGTAACTGCATCCCATCC 59.490 43.478 0.00 0.00 35.24 3.51
4551 4869 3.448093 TTTGTAACTGCATCCCATCCA 57.552 42.857 0.00 0.00 0.00 3.41
4552 4870 2.715749 TGTAACTGCATCCCATCCAG 57.284 50.000 0.00 0.00 0.00 3.86
4553 4871 1.312815 GTAACTGCATCCCATCCAGC 58.687 55.000 0.00 0.00 0.00 4.85
4554 4872 0.918258 TAACTGCATCCCATCCAGCA 59.082 50.000 0.00 0.00 35.43 4.41
4555 4873 0.260816 AACTGCATCCCATCCAGCAT 59.739 50.000 0.00 0.00 36.28 3.79
4556 4874 1.142936 ACTGCATCCCATCCAGCATA 58.857 50.000 0.00 0.00 36.28 3.14
4557 4875 1.073444 ACTGCATCCCATCCAGCATAG 59.927 52.381 0.00 0.00 36.28 2.23
4653 5014 3.008049 TGATCATCCATCCATCAGCTCTG 59.992 47.826 0.00 0.00 0.00 3.35
4656 5017 1.210538 TCCATCCATCAGCTCTGCTT 58.789 50.000 0.00 0.00 36.40 3.91
4753 5128 5.482526 ACCTGAACTACCACACATACATACA 59.517 40.000 0.00 0.00 0.00 2.29
4754 5129 6.156256 ACCTGAACTACCACACATACATACAT 59.844 38.462 0.00 0.00 0.00 2.29
4756 5131 7.652105 CCTGAACTACCACACATACATACATAC 59.348 40.741 0.00 0.00 0.00 2.39
4757 5132 8.301252 TGAACTACCACACATACATACATACT 57.699 34.615 0.00 0.00 0.00 2.12
4774 5166 0.764369 ACTCTGACCCTGACCTGCAA 60.764 55.000 0.00 0.00 0.00 4.08
4954 5412 2.905415 AGGGATGTCCATTGCAAAGA 57.095 45.000 1.71 0.00 38.24 2.52
5018 5485 3.515502 AGTTAGGATTCACAGTGCAGCTA 59.484 43.478 0.00 0.00 0.00 3.32
5019 5486 2.687700 AGGATTCACAGTGCAGCTAG 57.312 50.000 0.00 0.00 0.00 3.42
5020 5487 1.012841 GGATTCACAGTGCAGCTAGC 58.987 55.000 6.62 6.62 45.96 3.42
5021 5488 1.406614 GGATTCACAGTGCAGCTAGCT 60.407 52.381 12.68 12.68 45.94 3.32
5022 5489 1.932511 GATTCACAGTGCAGCTAGCTC 59.067 52.381 16.15 10.60 45.94 4.09
5023 5490 0.681175 TTCACAGTGCAGCTAGCTCA 59.319 50.000 16.15 13.21 45.94 4.26
5024 5491 0.900421 TCACAGTGCAGCTAGCTCAT 59.100 50.000 16.15 0.00 45.94 2.90
5025 5492 1.134877 TCACAGTGCAGCTAGCTCATC 60.135 52.381 16.15 7.73 45.94 2.92
5026 5493 0.900421 ACAGTGCAGCTAGCTCATCA 59.100 50.000 16.15 10.44 45.94 3.07
5027 5494 1.288350 CAGTGCAGCTAGCTCATCAC 58.712 55.000 23.50 23.50 45.94 3.06
5028 5495 0.900421 AGTGCAGCTAGCTCATCACA 59.100 50.000 28.47 16.04 45.94 3.58
5029 5496 1.485480 AGTGCAGCTAGCTCATCACAT 59.515 47.619 28.47 17.75 45.94 3.21
5030 5497 1.865970 GTGCAGCTAGCTCATCACATC 59.134 52.381 24.91 9.14 45.94 3.06
5031 5498 1.483415 TGCAGCTAGCTCATCACATCA 59.517 47.619 16.15 0.18 45.94 3.07
5077 5545 0.618968 TCCTCCTCCTCTTGCCCTTC 60.619 60.000 0.00 0.00 0.00 3.46
5078 5546 1.631071 CCTCCTCCTCTTGCCCTTCC 61.631 65.000 0.00 0.00 0.00 3.46
5079 5547 0.620121 CTCCTCCTCTTGCCCTTCCT 60.620 60.000 0.00 0.00 0.00 3.36
5080 5548 0.178861 TCCTCCTCTTGCCCTTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
5081 5549 0.254462 CCTCCTCTTGCCCTTCCTTC 59.746 60.000 0.00 0.00 0.00 3.46
5082 5550 0.254462 CTCCTCTTGCCCTTCCTTCC 59.746 60.000 0.00 0.00 0.00 3.46
5083 5551 0.178861 TCCTCTTGCCCTTCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
5084 5552 0.254462 CCTCTTGCCCTTCCTTCCTC 59.746 60.000 0.00 0.00 0.00 3.71
5085 5553 0.254462 CTCTTGCCCTTCCTTCCTCC 59.746 60.000 0.00 0.00 0.00 4.30
5086 5554 1.208165 TCTTGCCCTTCCTTCCTCCC 61.208 60.000 0.00 0.00 0.00 4.30
5087 5555 1.151587 TTGCCCTTCCTTCCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
5088 5556 0.776080 TTGCCCTTCCTTCCTCCCTT 60.776 55.000 0.00 0.00 0.00 3.95
5089 5557 0.120377 TGCCCTTCCTTCCTCCCTTA 59.880 55.000 0.00 0.00 0.00 2.69
5090 5558 1.275002 TGCCCTTCCTTCCTCCCTTAT 60.275 52.381 0.00 0.00 0.00 1.73
5091 5559 1.143889 GCCCTTCCTTCCTCCCTTATG 59.856 57.143 0.00 0.00 0.00 1.90
5092 5560 1.143889 CCCTTCCTTCCTCCCTTATGC 59.856 57.143 0.00 0.00 0.00 3.14
5093 5561 1.143889 CCTTCCTTCCTCCCTTATGCC 59.856 57.143 0.00 0.00 0.00 4.40
5094 5562 2.131023 CTTCCTTCCTCCCTTATGCCT 58.869 52.381 0.00 0.00 0.00 4.75
5095 5563 1.511613 TCCTTCCTCCCTTATGCCTG 58.488 55.000 0.00 0.00 0.00 4.85
5096 5564 0.179006 CCTTCCTCCCTTATGCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
5138 5606 3.007614 TGTTAGTTAGGCTTGTCCTGGAC 59.992 47.826 19.96 19.96 46.98 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.036380 ACGTGTTTGGATCTTTTTCTGGAC 59.964 41.667 0.00 0.00 0.00 4.02
1 2 4.204012 ACGTGTTTGGATCTTTTTCTGGA 58.796 39.130 0.00 0.00 0.00 3.86
2 3 4.568152 ACGTGTTTGGATCTTTTTCTGG 57.432 40.909 0.00 0.00 0.00 3.86
3 4 6.954944 TCTTACGTGTTTGGATCTTTTTCTG 58.045 36.000 0.00 0.00 0.00 3.02
4 5 7.562454 TTCTTACGTGTTTGGATCTTTTTCT 57.438 32.000 0.00 0.00 0.00 2.52
5 6 8.290325 AGATTCTTACGTGTTTGGATCTTTTTC 58.710 33.333 0.00 0.00 0.00 2.29
6 7 8.166422 AGATTCTTACGTGTTTGGATCTTTTT 57.834 30.769 0.00 0.00 0.00 1.94
7 8 7.745620 AGATTCTTACGTGTTTGGATCTTTT 57.254 32.000 0.00 0.00 0.00 2.27
8 9 7.333672 GGTAGATTCTTACGTGTTTGGATCTTT 59.666 37.037 0.00 0.00 0.00 2.52
9 10 6.817140 GGTAGATTCTTACGTGTTTGGATCTT 59.183 38.462 0.00 0.00 0.00 2.40
10 11 6.154706 AGGTAGATTCTTACGTGTTTGGATCT 59.845 38.462 0.00 3.34 0.00 2.75
11 12 6.338937 AGGTAGATTCTTACGTGTTTGGATC 58.661 40.000 0.00 0.00 0.00 3.36
12 13 6.295719 AGGTAGATTCTTACGTGTTTGGAT 57.704 37.500 0.00 0.00 0.00 3.41
13 14 5.733620 AGGTAGATTCTTACGTGTTTGGA 57.266 39.130 0.00 0.00 0.00 3.53
14 15 7.894376 TTAAGGTAGATTCTTACGTGTTTGG 57.106 36.000 0.00 0.00 0.00 3.28
15 16 7.955864 GCTTTAAGGTAGATTCTTACGTGTTTG 59.044 37.037 0.00 0.00 0.00 2.93
16 17 7.658575 TGCTTTAAGGTAGATTCTTACGTGTTT 59.341 33.333 0.00 0.00 0.00 2.83
17 18 7.156673 TGCTTTAAGGTAGATTCTTACGTGTT 58.843 34.615 0.00 0.00 0.00 3.32
18 19 6.694447 TGCTTTAAGGTAGATTCTTACGTGT 58.306 36.000 0.00 0.00 0.00 4.49
19 20 7.591006 TTGCTTTAAGGTAGATTCTTACGTG 57.409 36.000 0.00 0.00 0.00 4.49
20 21 7.829378 CTTGCTTTAAGGTAGATTCTTACGT 57.171 36.000 0.00 0.00 32.56 3.57
34 35 6.541111 AACGAGTAGAAACCTTGCTTTAAG 57.459 37.500 0.00 0.00 36.11 1.85
35 36 8.500773 CAATAACGAGTAGAAACCTTGCTTTAA 58.499 33.333 0.00 0.00 0.00 1.52
36 37 7.360607 GCAATAACGAGTAGAAACCTTGCTTTA 60.361 37.037 0.00 0.00 34.99 1.85
37 38 6.567891 GCAATAACGAGTAGAAACCTTGCTTT 60.568 38.462 0.00 0.00 34.99 3.51
38 39 5.106673 GCAATAACGAGTAGAAACCTTGCTT 60.107 40.000 0.00 0.00 34.99 3.91
39 40 4.392138 GCAATAACGAGTAGAAACCTTGCT 59.608 41.667 0.00 0.00 34.99 3.91
40 41 4.392138 AGCAATAACGAGTAGAAACCTTGC 59.608 41.667 0.00 0.00 37.36 4.01
41 42 6.402226 GGAAGCAATAACGAGTAGAAACCTTG 60.402 42.308 0.00 0.00 0.00 3.61
42 43 5.642491 GGAAGCAATAACGAGTAGAAACCTT 59.358 40.000 0.00 0.00 0.00 3.50
43 44 5.176592 GGAAGCAATAACGAGTAGAAACCT 58.823 41.667 0.00 0.00 0.00 3.50
44 45 4.933400 TGGAAGCAATAACGAGTAGAAACC 59.067 41.667 0.00 0.00 0.00 3.27
45 46 5.163884 GGTGGAAGCAATAACGAGTAGAAAC 60.164 44.000 0.00 0.00 0.00 2.78
46 47 4.933400 GGTGGAAGCAATAACGAGTAGAAA 59.067 41.667 0.00 0.00 0.00 2.52
47 48 4.501071 GGTGGAAGCAATAACGAGTAGAA 58.499 43.478 0.00 0.00 0.00 2.10
48 49 3.118884 GGGTGGAAGCAATAACGAGTAGA 60.119 47.826 0.00 0.00 34.77 2.59
49 50 3.118738 AGGGTGGAAGCAATAACGAGTAG 60.119 47.826 0.00 0.00 34.77 2.57
50 51 2.835764 AGGGTGGAAGCAATAACGAGTA 59.164 45.455 0.00 0.00 34.77 2.59
51 52 1.628846 AGGGTGGAAGCAATAACGAGT 59.371 47.619 0.00 0.00 34.77 4.18
52 53 2.403252 AGGGTGGAAGCAATAACGAG 57.597 50.000 0.00 0.00 34.77 4.18
53 54 2.835764 AGTAGGGTGGAAGCAATAACGA 59.164 45.455 0.00 0.00 34.77 3.85
54 55 2.936498 CAGTAGGGTGGAAGCAATAACG 59.064 50.000 0.00 0.00 34.77 3.18
55 56 4.216411 TCAGTAGGGTGGAAGCAATAAC 57.784 45.455 0.00 0.00 34.77 1.89
56 57 4.473196 TCATCAGTAGGGTGGAAGCAATAA 59.527 41.667 0.00 0.00 34.77 1.40
57 58 4.037222 TCATCAGTAGGGTGGAAGCAATA 58.963 43.478 0.00 0.00 34.77 1.90
58 59 2.846206 TCATCAGTAGGGTGGAAGCAAT 59.154 45.455 0.00 0.00 34.77 3.56
59 60 2.027192 GTCATCAGTAGGGTGGAAGCAA 60.027 50.000 0.00 0.00 34.77 3.91
60 61 1.555075 GTCATCAGTAGGGTGGAAGCA 59.445 52.381 0.00 0.00 34.77 3.91
61 62 1.555075 TGTCATCAGTAGGGTGGAAGC 59.445 52.381 0.00 0.00 0.00 3.86
62 63 2.419297 GCTGTCATCAGTAGGGTGGAAG 60.419 54.545 0.00 0.00 43.05 3.46
63 64 1.555075 GCTGTCATCAGTAGGGTGGAA 59.445 52.381 0.00 0.00 43.05 3.53
64 65 1.195115 GCTGTCATCAGTAGGGTGGA 58.805 55.000 0.00 0.00 43.05 4.02
65 66 1.198713 AGCTGTCATCAGTAGGGTGG 58.801 55.000 0.00 0.00 43.05 4.61
66 67 4.141846 ACATTAGCTGTCATCAGTAGGGTG 60.142 45.833 0.00 0.00 43.05 4.61
67 68 4.033709 ACATTAGCTGTCATCAGTAGGGT 58.966 43.478 0.00 0.00 43.05 4.34
68 69 4.679373 ACATTAGCTGTCATCAGTAGGG 57.321 45.455 0.00 0.00 43.05 3.53
69 70 6.810911 AGTAACATTAGCTGTCATCAGTAGG 58.189 40.000 0.00 0.00 43.05 3.18
70 71 9.803315 TTTAGTAACATTAGCTGTCATCAGTAG 57.197 33.333 0.00 0.00 43.05 2.57
72 73 9.155975 CTTTTAGTAACATTAGCTGTCATCAGT 57.844 33.333 0.00 0.00 43.05 3.41
73 74 8.119226 GCTTTTAGTAACATTAGCTGTCATCAG 58.881 37.037 0.00 0.00 43.87 2.90
74 75 7.824289 AGCTTTTAGTAACATTAGCTGTCATCA 59.176 33.333 0.00 0.00 36.98 3.07
75 76 8.202745 AGCTTTTAGTAACATTAGCTGTCATC 57.797 34.615 0.00 0.00 36.98 2.92
76 77 8.567285 AAGCTTTTAGTAACATTAGCTGTCAT 57.433 30.769 0.00 0.00 38.82 3.06
77 78 7.979444 AAGCTTTTAGTAACATTAGCTGTCA 57.021 32.000 0.00 0.00 38.82 3.58
78 79 9.367444 TCTAAGCTTTTAGTAACATTAGCTGTC 57.633 33.333 3.20 0.00 38.82 3.51
79 80 9.892130 ATCTAAGCTTTTAGTAACATTAGCTGT 57.108 29.630 3.20 0.00 38.82 4.40
90 91 9.372369 GCTCTTTCTTCATCTAAGCTTTTAGTA 57.628 33.333 3.20 0.00 34.97 1.82
91 92 8.100164 AGCTCTTTCTTCATCTAAGCTTTTAGT 58.900 33.333 3.20 0.00 35.17 2.24
92 93 8.491331 AGCTCTTTCTTCATCTAAGCTTTTAG 57.509 34.615 3.20 0.00 35.17 1.85
93 94 8.854614 AAGCTCTTTCTTCATCTAAGCTTTTA 57.145 30.769 3.20 0.00 43.89 1.52
94 95 7.665145 AGAAGCTCTTTCTTCATCTAAGCTTTT 59.335 33.333 3.20 0.43 45.68 2.27
95 96 7.119553 CAGAAGCTCTTTCTTCATCTAAGCTTT 59.880 37.037 3.20 0.00 45.68 3.51
97 98 6.070881 TCAGAAGCTCTTTCTTCATCTAAGCT 60.071 38.462 6.33 0.00 43.68 3.74
98 99 6.105333 TCAGAAGCTCTTTCTTCATCTAAGC 58.895 40.000 6.33 0.00 43.68 3.09
99 100 6.256321 GCTCAGAAGCTCTTTCTTCATCTAAG 59.744 42.308 6.33 0.00 43.68 2.18
100 101 6.105333 GCTCAGAAGCTCTTTCTTCATCTAA 58.895 40.000 6.33 0.00 43.68 2.10
101 102 5.659463 GCTCAGAAGCTCTTTCTTCATCTA 58.341 41.667 6.33 0.00 43.68 1.98
102 103 4.506758 GCTCAGAAGCTCTTTCTTCATCT 58.493 43.478 6.33 0.00 43.68 2.90
103 104 3.306703 CGCTCAGAAGCTCTTTCTTCATC 59.693 47.826 6.33 0.00 43.68 2.92
104 105 3.056250 TCGCTCAGAAGCTCTTTCTTCAT 60.056 43.478 6.33 0.00 43.68 2.57
105 106 2.297315 TCGCTCAGAAGCTCTTTCTTCA 59.703 45.455 6.33 0.00 43.68 3.02
106 107 2.923020 CTCGCTCAGAAGCTCTTTCTTC 59.077 50.000 0.00 0.00 43.68 2.87
107 108 2.353605 CCTCGCTCAGAAGCTCTTTCTT 60.354 50.000 0.00 0.00 43.68 2.52
109 110 1.639280 CCTCGCTCAGAAGCTCTTTC 58.361 55.000 0.00 0.00 46.91 2.62
110 111 0.248843 CCCTCGCTCAGAAGCTCTTT 59.751 55.000 0.00 0.00 46.91 2.52
111 112 1.896694 CCCTCGCTCAGAAGCTCTT 59.103 57.895 0.00 0.00 46.91 2.85
112 113 2.720134 GCCCTCGCTCAGAAGCTCT 61.720 63.158 0.00 0.00 46.91 4.09
113 114 2.202864 GCCCTCGCTCAGAAGCTC 60.203 66.667 0.00 0.00 46.91 4.09
114 115 2.683212 AGCCCTCGCTCAGAAGCT 60.683 61.111 0.00 0.00 43.95 3.74
123 124 2.564721 AAAGCCAACAAGCCCTCGC 61.565 57.895 0.00 0.00 0.00 5.03
124 125 1.286880 CAAAGCCAACAAGCCCTCG 59.713 57.895 0.00 0.00 0.00 4.63
125 126 1.005748 GCAAAGCCAACAAGCCCTC 60.006 57.895 0.00 0.00 0.00 4.30
126 127 1.050421 AAGCAAAGCCAACAAGCCCT 61.050 50.000 0.00 0.00 0.00 5.19
127 128 0.881600 CAAGCAAAGCCAACAAGCCC 60.882 55.000 0.00 0.00 0.00 5.19
128 129 0.179076 ACAAGCAAAGCCAACAAGCC 60.179 50.000 0.00 0.00 0.00 4.35
129 130 1.328374 CAACAAGCAAAGCCAACAAGC 59.672 47.619 0.00 0.00 0.00 4.01
130 131 1.935199 CCAACAAGCAAAGCCAACAAG 59.065 47.619 0.00 0.00 0.00 3.16
131 132 2.011046 GCCAACAAGCAAAGCCAACAA 61.011 47.619 0.00 0.00 0.00 2.83
132 133 0.461693 GCCAACAAGCAAAGCCAACA 60.462 50.000 0.00 0.00 0.00 3.33
133 134 1.489881 CGCCAACAAGCAAAGCCAAC 61.490 55.000 0.00 0.00 0.00 3.77
134 135 1.227205 CGCCAACAAGCAAAGCCAA 60.227 52.632 0.00 0.00 0.00 4.52
135 136 2.416678 CGCCAACAAGCAAAGCCA 59.583 55.556 0.00 0.00 0.00 4.75
136 137 1.950630 CACGCCAACAAGCAAAGCC 60.951 57.895 0.00 0.00 0.00 4.35
137 138 1.950630 CCACGCCAACAAGCAAAGC 60.951 57.895 0.00 0.00 0.00 3.51
138 139 0.314935 ATCCACGCCAACAAGCAAAG 59.685 50.000 0.00 0.00 0.00 2.77
139 140 1.610363 TATCCACGCCAACAAGCAAA 58.390 45.000 0.00 0.00 0.00 3.68
140 141 1.610363 TTATCCACGCCAACAAGCAA 58.390 45.000 0.00 0.00 0.00 3.91
141 142 1.742831 GATTATCCACGCCAACAAGCA 59.257 47.619 0.00 0.00 0.00 3.91
142 143 2.017049 AGATTATCCACGCCAACAAGC 58.983 47.619 0.00 0.00 0.00 4.01
143 144 3.242413 CGAAGATTATCCACGCCAACAAG 60.242 47.826 0.00 0.00 0.00 3.16
144 145 2.675844 CGAAGATTATCCACGCCAACAA 59.324 45.455 0.00 0.00 0.00 2.83
145 146 2.276201 CGAAGATTATCCACGCCAACA 58.724 47.619 0.00 0.00 0.00 3.33
146 147 2.277084 ACGAAGATTATCCACGCCAAC 58.723 47.619 8.11 0.00 0.00 3.77
147 148 2.546778 GACGAAGATTATCCACGCCAA 58.453 47.619 8.11 0.00 0.00 4.52
148 149 1.535226 CGACGAAGATTATCCACGCCA 60.535 52.381 8.11 0.00 0.00 5.69
149 150 1.129326 CGACGAAGATTATCCACGCC 58.871 55.000 8.11 0.00 0.00 5.68
150 151 1.779724 GTCGACGAAGATTATCCACGC 59.220 52.381 0.00 2.53 0.00 5.34
151 152 3.060978 TGTCGACGAAGATTATCCACG 57.939 47.619 11.62 6.98 0.00 4.94
152 153 4.669318 TCTTGTCGACGAAGATTATCCAC 58.331 43.478 19.73 0.00 0.00 4.02
153 154 4.638865 TCTCTTGTCGACGAAGATTATCCA 59.361 41.667 22.20 6.79 0.00 3.41
154 155 4.971220 GTCTCTTGTCGACGAAGATTATCC 59.029 45.833 22.20 10.79 0.00 2.59
155 156 5.812652 AGTCTCTTGTCGACGAAGATTATC 58.187 41.667 22.20 15.32 36.53 1.75
156 157 5.821516 AGTCTCTTGTCGACGAAGATTAT 57.178 39.130 22.20 12.86 36.53 1.28
157 158 5.048921 ACAAGTCTCTTGTCGACGAAGATTA 60.049 40.000 22.20 14.72 36.53 1.75
158 159 4.230657 CAAGTCTCTTGTCGACGAAGATT 58.769 43.478 22.20 14.06 36.53 2.40
159 160 3.253677 ACAAGTCTCTTGTCGACGAAGAT 59.746 43.478 22.20 11.29 36.53 2.40
160 161 2.617308 ACAAGTCTCTTGTCGACGAAGA 59.383 45.455 21.26 21.26 36.53 2.87
161 162 3.001395 ACAAGTCTCTTGTCGACGAAG 57.999 47.619 11.62 14.80 36.53 3.79
162 163 4.761235 ATACAAGTCTCTTGTCGACGAA 57.239 40.909 16.65 5.72 36.53 3.85
163 164 4.214758 TCAATACAAGTCTCTTGTCGACGA 59.785 41.667 16.65 8.40 36.53 4.20
164 165 4.473199 TCAATACAAGTCTCTTGTCGACG 58.527 43.478 16.65 0.00 36.53 5.12
165 166 6.764877 TTTCAATACAAGTCTCTTGTCGAC 57.235 37.500 16.65 9.11 34.11 4.20
166 167 7.173863 GTTTTCAATACAAGTCTCTTGTCGA 57.826 36.000 16.65 10.43 34.11 4.20
429 430 0.738762 GAAACCCTAACCGTCGCTCC 60.739 60.000 0.00 0.00 0.00 4.70
430 431 0.037975 TGAAACCCTAACCGTCGCTC 60.038 55.000 0.00 0.00 0.00 5.03
462 463 6.603201 TGAGTATTATTTTTGCTCCTTGGAGG 59.397 38.462 17.33 0.00 36.46 4.30
463 464 7.337942 AGTGAGTATTATTTTTGCTCCTTGGAG 59.662 37.037 12.07 12.07 0.00 3.86
484 485 9.828852 CGTTATTAGATTAGCCTAGTAAGTGAG 57.171 37.037 0.00 0.00 0.00 3.51
485 486 9.565090 TCGTTATTAGATTAGCCTAGTAAGTGA 57.435 33.333 0.00 0.00 0.00 3.41
486 487 9.828852 CTCGTTATTAGATTAGCCTAGTAAGTG 57.171 37.037 0.00 0.00 0.00 3.16
509 510 7.688478 TTGTGTAATCATAATTACGGACTCG 57.312 36.000 0.00 0.00 46.87 4.18
512 513 9.916397 CTCTTTTGTGTAATCATAATTACGGAC 57.084 33.333 0.00 0.00 46.87 4.79
513 514 9.104965 CCTCTTTTGTGTAATCATAATTACGGA 57.895 33.333 0.00 0.00 46.87 4.69
518 519 7.201732 CGCCTCCTCTTTTGTGTAATCATAATT 60.202 37.037 0.00 0.00 0.00 1.40
524 525 2.678336 CCGCCTCCTCTTTTGTGTAATC 59.322 50.000 0.00 0.00 0.00 1.75
544 548 1.981256 TGCTCCTCTTTTGAACACCC 58.019 50.000 0.00 0.00 0.00 4.61
571 575 2.019984 CCTGCACCTCTCTTTATTGGC 58.980 52.381 0.00 0.00 0.00 4.52
607 614 3.890936 GAGCTCACTTGCCACGGCT 62.891 63.158 9.40 0.00 42.51 5.52
630 637 4.900635 ATTATTACGGGAAAGCTTGCTG 57.099 40.909 3.95 0.00 0.00 4.41
667 675 0.345146 TCATGTGATAGGGGGTGGGA 59.655 55.000 0.00 0.00 0.00 4.37
668 676 0.474184 GTCATGTGATAGGGGGTGGG 59.526 60.000 0.00 0.00 0.00 4.61
669 677 0.106708 CGTCATGTGATAGGGGGTGG 59.893 60.000 0.00 0.00 0.00 4.61
670 678 0.106708 CCGTCATGTGATAGGGGGTG 59.893 60.000 0.00 0.00 0.00 4.61
693 701 1.297745 GACTACGAGCGAGCTTCCG 60.298 63.158 0.00 1.71 0.00 4.30
741 771 4.453272 GGGAAGTTATAATAGGGGAGGGGA 60.453 50.000 0.00 0.00 0.00 4.81
742 772 3.850774 GGGAAGTTATAATAGGGGAGGGG 59.149 52.174 0.00 0.00 0.00 4.79
747 777 6.102762 ACTTTGGAGGGAAGTTATAATAGGGG 59.897 42.308 0.00 0.00 33.76 4.79
849 888 1.633852 GCTGCTGCTTCTTCGTCCTG 61.634 60.000 8.53 0.00 36.03 3.86
944 991 0.326264 CACCCCTGCTGCTCTAACTT 59.674 55.000 0.00 0.00 0.00 2.66
947 994 1.229496 TCCACCCCTGCTGCTCTAA 60.229 57.895 0.00 0.00 0.00 2.10
948 995 1.687146 CTCCACCCCTGCTGCTCTA 60.687 63.158 0.00 0.00 0.00 2.43
974 1026 0.466555 CCTCTCCCTCTCTACCACCG 60.467 65.000 0.00 0.00 0.00 4.94
981 1033 1.291109 TCTCGAACCTCTCCCTCTCT 58.709 55.000 0.00 0.00 0.00 3.10
982 1034 1.953686 CATCTCGAACCTCTCCCTCTC 59.046 57.143 0.00 0.00 0.00 3.20
987 1039 0.397254 TCCCCATCTCGAACCTCTCC 60.397 60.000 0.00 0.00 0.00 3.71
1380 1441 1.606601 GGGGTCTTTGGCTGGTTCC 60.607 63.158 0.00 0.00 0.00 3.62
1383 1444 0.190815 AAATGGGGTCTTTGGCTGGT 59.809 50.000 0.00 0.00 0.00 4.00
1438 1504 0.900421 TCTCGTCTCGGGACTGACTA 59.100 55.000 14.69 0.00 40.10 2.59
1458 1524 4.812476 TGCATTCGGACGCCCTCG 62.812 66.667 0.00 0.00 42.43 4.63
1459 1525 2.292794 TACTGCATTCGGACGCCCTC 62.293 60.000 0.00 0.00 0.00 4.30
1460 1526 1.686325 ATACTGCATTCGGACGCCCT 61.686 55.000 0.00 0.00 0.00 5.19
1461 1527 1.222115 GATACTGCATTCGGACGCCC 61.222 60.000 0.00 0.00 0.00 6.13
1480 1546 3.062763 AGAGACAAGCAACACGAGAATG 58.937 45.455 0.00 0.00 0.00 2.67
1484 1550 2.410053 GCTAAGAGACAAGCAACACGAG 59.590 50.000 0.00 0.00 38.63 4.18
1559 1630 1.072852 GATCCCCATGCTCTGCTCC 59.927 63.158 0.00 0.00 0.00 4.70
1590 1661 4.019231 GGGATTAGGACAAAACAGAGGAGT 60.019 45.833 0.00 0.00 0.00 3.85
1714 1795 1.404477 GTGGCACGGAATGAAAAACG 58.596 50.000 0.00 0.00 0.00 3.60
1738 1819 5.246981 TGATGGAAAGGAGAACAAGATGT 57.753 39.130 0.00 0.00 0.00 3.06
1745 1826 2.356069 GCGGAATGATGGAAAGGAGAAC 59.644 50.000 0.00 0.00 0.00 3.01
1828 1912 3.132111 AGAGATCTTTCTTTCTCTCCGGC 59.868 47.826 0.00 0.00 44.12 6.13
1838 1922 6.836242 AGAACAACTTGGAGAGATCTTTCTT 58.164 36.000 12.62 0.00 30.30 2.52
1879 1968 1.604604 TTCTTTCCTTGGCTTCCGTG 58.395 50.000 0.00 0.00 0.00 4.94
1881 1970 2.680339 GAGATTCTTTCCTTGGCTTCCG 59.320 50.000 0.00 0.00 0.00 4.30
1890 1979 6.069206 TCCTCCAAATGATGAGATTCTTTCCT 60.069 38.462 0.00 0.00 0.00 3.36
1912 2001 2.092049 TGCATCCATCATCTTGCTTCCT 60.092 45.455 0.00 0.00 36.10 3.36
1918 2013 3.314357 ACACGATTGCATCCATCATCTTG 59.686 43.478 0.00 0.00 0.00 3.02
1920 2015 2.876550 CACACGATTGCATCCATCATCT 59.123 45.455 0.00 0.00 0.00 2.90
1952 2054 3.615155 AGCAGCCTTTTATCTTGTCCTC 58.385 45.455 0.00 0.00 0.00 3.71
2013 2118 1.861575 GATCCGATCCGAAGCAACTTC 59.138 52.381 0.00 0.00 37.16 3.01
2049 2165 3.411446 ACGGTTGCTCAAATCAGAATCA 58.589 40.909 0.00 0.00 0.00 2.57
2074 2193 3.491267 GGGTCGAATCGAAGATGAATCAC 59.509 47.826 7.01 0.00 45.12 3.06
2082 2201 0.750850 GGATGGGGTCGAATCGAAGA 59.249 55.000 7.01 0.00 45.75 2.87
2083 2202 0.249911 GGGATGGGGTCGAATCGAAG 60.250 60.000 7.01 0.00 37.72 3.79
2084 2203 1.827394 GGGATGGGGTCGAATCGAA 59.173 57.895 7.01 0.00 37.72 3.71
2085 2204 2.495409 CGGGATGGGGTCGAATCGA 61.495 63.158 0.00 0.00 0.00 3.59
2086 2205 1.816863 ATCGGGATGGGGTCGAATCG 61.817 60.000 0.00 0.00 36.49 3.34
2087 2206 1.263356 TATCGGGATGGGGTCGAATC 58.737 55.000 0.00 0.00 36.49 2.52
2093 2212 2.133858 AGGATTTATCGGGATGGGGT 57.866 50.000 0.00 0.00 0.00 4.95
2094 2213 3.055094 CAGTAGGATTTATCGGGATGGGG 60.055 52.174 0.00 0.00 0.00 4.96
2095 2214 3.619979 GCAGTAGGATTTATCGGGATGGG 60.620 52.174 0.00 0.00 0.00 4.00
2096 2215 3.007940 TGCAGTAGGATTTATCGGGATGG 59.992 47.826 0.00 0.00 0.00 3.51
2097 2216 4.248859 CTGCAGTAGGATTTATCGGGATG 58.751 47.826 5.25 0.00 0.00 3.51
2098 2217 3.307059 GCTGCAGTAGGATTTATCGGGAT 60.307 47.826 16.64 0.00 0.00 3.85
2099 2218 2.037251 GCTGCAGTAGGATTTATCGGGA 59.963 50.000 16.64 0.00 0.00 5.14
2100 2219 2.037772 AGCTGCAGTAGGATTTATCGGG 59.962 50.000 16.64 0.00 0.00 5.14
2101 2220 3.393089 AGCTGCAGTAGGATTTATCGG 57.607 47.619 16.64 0.00 0.00 4.18
2102 2221 4.920340 CAGTAGCTGCAGTAGGATTTATCG 59.080 45.833 16.64 0.00 0.00 2.92
2124 2243 1.974265 TCATTCGTTCTGTTTGGGCA 58.026 45.000 0.00 0.00 0.00 5.36
2132 2251 7.362662 TGAGGAAAAGATTTTCATTCGTTCTG 58.637 34.615 17.31 0.00 46.34 3.02
2141 2260 4.917385 TCGGGATGAGGAAAAGATTTTCA 58.083 39.130 17.31 1.36 46.34 2.69
2197 2319 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2209 2341 5.473931 CACTCCATCGAAGAAGAAGAAGAA 58.526 41.667 0.00 0.00 43.58 2.52
2210 2342 4.081972 CCACTCCATCGAAGAAGAAGAAGA 60.082 45.833 0.00 0.00 43.58 2.87
2211 2343 4.180057 CCACTCCATCGAAGAAGAAGAAG 58.820 47.826 0.00 0.00 43.58 2.85
2212 2344 3.055819 CCCACTCCATCGAAGAAGAAGAA 60.056 47.826 0.00 0.00 43.58 2.52
2213 2345 2.497675 CCCACTCCATCGAAGAAGAAGA 59.502 50.000 0.00 0.00 43.58 2.87
2214 2346 2.234908 ACCCACTCCATCGAAGAAGAAG 59.765 50.000 0.00 0.00 43.58 2.85
2215 2347 2.028112 CACCCACTCCATCGAAGAAGAA 60.028 50.000 0.00 0.00 43.58 2.52
2216 2348 1.550524 CACCCACTCCATCGAAGAAGA 59.449 52.381 0.00 0.00 43.58 2.87
2217 2349 1.550524 TCACCCACTCCATCGAAGAAG 59.449 52.381 0.00 0.00 43.58 2.85
2218 2350 1.639722 TCACCCACTCCATCGAAGAA 58.360 50.000 0.00 0.00 43.58 2.52
2219 2351 1.866015 ATCACCCACTCCATCGAAGA 58.134 50.000 0.00 0.00 45.75 2.87
2220 2352 2.093500 TCAATCACCCACTCCATCGAAG 60.093 50.000 0.00 0.00 0.00 3.79
2221 2353 1.905894 TCAATCACCCACTCCATCGAA 59.094 47.619 0.00 0.00 0.00 3.71
2222 2354 1.567357 TCAATCACCCACTCCATCGA 58.433 50.000 0.00 0.00 0.00 3.59
2223 2355 2.487934 GATCAATCACCCACTCCATCG 58.512 52.381 0.00 0.00 0.00 3.84
2224 2356 2.487934 CGATCAATCACCCACTCCATC 58.512 52.381 0.00 0.00 0.00 3.51
3413 3575 1.212751 CATGACCACGCTCACGAGA 59.787 57.895 0.00 0.00 43.93 4.04
3419 3581 1.812922 CTCCTGCATGACCACGCTC 60.813 63.158 0.00 0.00 0.00 5.03
3467 3629 1.585521 GTACACCGCCGTGATCTCG 60.586 63.158 12.29 10.15 43.14 4.04
3977 4142 2.671619 CGGGATGTTGGCGTTGGT 60.672 61.111 0.00 0.00 0.00 3.67
3980 4145 2.359478 GACCGGGATGTTGGCGTT 60.359 61.111 6.32 0.00 0.00 4.84
4214 4379 6.638873 CCAAACCAAAAACAAAAACAACTTCC 59.361 34.615 0.00 0.00 0.00 3.46
4301 4484 0.107312 AATGGCAGCAGCACCTCTAG 60.107 55.000 2.65 0.00 44.61 2.43
4335 4527 6.042208 GGATCCTAGTATTTCACTTGGCTACT 59.958 42.308 3.84 0.00 46.35 2.57
4380 4581 4.878968 ACAAGAAGGAAAGGAAAGGGAAA 58.121 39.130 0.00 0.00 0.00 3.13
4381 4582 4.536295 ACAAGAAGGAAAGGAAAGGGAA 57.464 40.909 0.00 0.00 0.00 3.97
4382 4583 4.536295 AACAAGAAGGAAAGGAAAGGGA 57.464 40.909 0.00 0.00 0.00 4.20
4383 4584 6.918067 ATTAACAAGAAGGAAAGGAAAGGG 57.082 37.500 0.00 0.00 0.00 3.95
4502 4754 4.323562 GGGGCAAAGCTTCTTCTTCTACTA 60.324 45.833 0.00 0.00 0.00 1.82
4505 4757 2.615493 CGGGGCAAAGCTTCTTCTTCTA 60.615 50.000 0.00 0.00 0.00 2.10
4519 4837 2.100989 AGTTACAAAACAACGGGGCAA 58.899 42.857 0.00 0.00 38.12 4.52
4546 4864 7.836479 TCCATCTATCTATCTATGCTGGATG 57.164 40.000 0.00 0.00 0.00 3.51
4547 4865 8.233116 TCATCCATCTATCTATCTATGCTGGAT 58.767 37.037 0.00 0.00 40.64 3.41
4548 4866 7.589993 TCATCCATCTATCTATCTATGCTGGA 58.410 38.462 0.00 0.00 34.97 3.86
4550 4868 8.143193 GGTTCATCCATCTATCTATCTATGCTG 58.857 40.741 0.00 0.00 35.97 4.41
4551 4869 7.843252 TGGTTCATCCATCTATCTATCTATGCT 59.157 37.037 0.00 0.00 41.93 3.79
4552 4870 8.016301 TGGTTCATCCATCTATCTATCTATGC 57.984 38.462 0.00 0.00 41.93 3.14
4653 5014 1.136336 CGACTGTAACGGCAGAAAAGC 60.136 52.381 10.17 0.00 39.62 3.51
4656 5017 2.524300 GCGACTGTAACGGCAGAAA 58.476 52.632 10.17 0.00 39.62 2.52
4753 5128 1.273267 TGCAGGTCAGGGTCAGAGTAT 60.273 52.381 0.00 0.00 0.00 2.12
4754 5129 0.114364 TGCAGGTCAGGGTCAGAGTA 59.886 55.000 0.00 0.00 0.00 2.59
4756 5131 0.397941 TTTGCAGGTCAGGGTCAGAG 59.602 55.000 0.00 0.00 0.00 3.35
4757 5132 1.067295 ATTTGCAGGTCAGGGTCAGA 58.933 50.000 0.00 0.00 0.00 3.27
4774 5166 4.828409 CCTCACACAGGCACCATT 57.172 55.556 0.00 0.00 34.56 3.16
4954 5412 2.237143 CTCTATGTGGTGGTGACATGGT 59.763 50.000 0.00 0.00 46.14 3.55
5018 5485 5.105513 TGCAATGAATTTGATGTGATGAGCT 60.106 36.000 0.00 0.00 37.53 4.09
5019 5486 5.106442 TGCAATGAATTTGATGTGATGAGC 58.894 37.500 0.00 0.00 37.53 4.26
5020 5487 7.544217 TCTTTGCAATGAATTTGATGTGATGAG 59.456 33.333 12.27 0.00 37.53 2.90
5021 5488 7.379750 TCTTTGCAATGAATTTGATGTGATGA 58.620 30.769 12.27 0.00 37.53 2.92
5022 5489 7.589574 TCTTTGCAATGAATTTGATGTGATG 57.410 32.000 12.27 0.00 37.53 3.07
5023 5490 9.529325 CTATCTTTGCAATGAATTTGATGTGAT 57.471 29.630 17.82 1.39 37.53 3.06
5024 5491 8.741841 TCTATCTTTGCAATGAATTTGATGTGA 58.258 29.630 17.82 4.92 37.53 3.58
5025 5492 8.920509 TCTATCTTTGCAATGAATTTGATGTG 57.079 30.769 17.82 3.08 37.53 3.21
5026 5493 9.745880 GATCTATCTTTGCAATGAATTTGATGT 57.254 29.630 17.82 3.14 37.53 3.06
5027 5494 9.744468 TGATCTATCTTTGCAATGAATTTGATG 57.256 29.630 17.82 5.16 37.53 3.07
5031 5498 9.760077 GGAATGATCTATCTTTGCAATGAATTT 57.240 29.630 17.82 5.77 34.14 1.82
5077 5545 0.179006 GCAGGCATAAGGGAGGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
5078 5546 0.179006 GGCAGGCATAAGGGAGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
5079 5547 1.645402 GGGCAGGCATAAGGGAGGAA 61.645 60.000 0.00 0.00 0.00 3.36
5080 5548 2.078665 GGGCAGGCATAAGGGAGGA 61.079 63.158 0.00 0.00 0.00 3.71
5081 5549 0.768221 TAGGGCAGGCATAAGGGAGG 60.768 60.000 0.00 0.00 0.00 4.30
5082 5550 1.140312 TTAGGGCAGGCATAAGGGAG 58.860 55.000 0.00 0.00 0.00 4.30
5083 5551 0.843984 GTTAGGGCAGGCATAAGGGA 59.156 55.000 0.57 0.00 0.00 4.20
5084 5552 0.550914 TGTTAGGGCAGGCATAAGGG 59.449 55.000 0.57 0.00 0.00 3.95
5085 5553 2.024414 GTTGTTAGGGCAGGCATAAGG 58.976 52.381 0.57 0.00 0.00 2.69
5086 5554 2.684881 CTGTTGTTAGGGCAGGCATAAG 59.315 50.000 0.57 0.00 0.00 1.73
5087 5555 2.041081 ACTGTTGTTAGGGCAGGCATAA 59.959 45.455 0.00 0.00 34.79 1.90
5088 5556 1.633432 ACTGTTGTTAGGGCAGGCATA 59.367 47.619 0.00 0.00 34.79 3.14
5089 5557 0.405585 ACTGTTGTTAGGGCAGGCAT 59.594 50.000 0.00 0.00 34.79 4.40
5090 5558 0.184933 AACTGTTGTTAGGGCAGGCA 59.815 50.000 0.00 0.00 34.15 4.75
5091 5559 0.881796 GAACTGTTGTTAGGGCAGGC 59.118 55.000 0.00 0.00 36.39 4.85
5092 5560 1.073923 AGGAACTGTTGTTAGGGCAGG 59.926 52.381 0.00 0.00 37.18 4.85
5093 5561 2.568623 AGGAACTGTTGTTAGGGCAG 57.431 50.000 0.00 0.00 37.18 4.85
5094 5562 2.488347 GGAAGGAACTGTTGTTAGGGCA 60.488 50.000 0.00 0.00 40.86 5.36
5095 5563 2.160205 GGAAGGAACTGTTGTTAGGGC 58.840 52.381 0.00 0.00 40.86 5.19
5096 5564 3.181443 ACAGGAAGGAACTGTTGTTAGGG 60.181 47.826 0.00 0.00 46.38 3.53
5138 5606 0.244994 CAAGAGTCCGTCCACTCCAG 59.755 60.000 3.46 0.00 43.53 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.