Multiple sequence alignment - TraesCS2D01G043500

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G043500 chr2D 100.000 7863 0 0 1 7863 15636400 15628538 0.000000e+00 14521.0
1 TraesCS2D01G043500 chr2D 88.915 433 33 5 7437 7855 192209826 192210257 3.250000e-143 520.0
2 TraesCS2D01G043500 chr2D 80.165 726 102 21 1714 2402 7178598 7177878 9.110000e-139 505.0
3 TraesCS2D01G043500 chr2D 93.827 81 5 0 7361 7441 15628983 15628903 1.070000e-23 122.0
4 TraesCS2D01G043500 chr2D 93.827 81 5 0 7418 7498 15629040 15628960 1.070000e-23 122.0
5 TraesCS2D01G043500 chr2A 89.249 3451 230 66 3807 7154 17682684 17679272 0.000000e+00 4187.0
6 TraesCS2D01G043500 chr2A 85.753 1488 128 24 1037 2467 17684426 17682966 0.000000e+00 1496.0
7 TraesCS2D01G043500 chr2A 89.101 1046 85 15 1 1041 17694482 17693461 0.000000e+00 1273.0
8 TraesCS2D01G043500 chr2A 82.058 719 89 20 1713 2402 323511744 323511037 1.900000e-160 577.0
9 TraesCS2D01G043500 chr2A 79.505 727 88 34 1714 2402 214714474 214715177 2.000000e-125 460.0
10 TraesCS2D01G043500 chr2A 76.198 605 94 23 3913 4489 478165917 478165335 2.800000e-69 274.0
11 TraesCS2D01G043500 chr2A 86.087 230 26 4 2177 2402 320234491 320234718 7.880000e-60 243.0
12 TraesCS2D01G043500 chr2A 89.109 101 11 0 2584 2684 197215555 197215455 8.280000e-25 126.0
13 TraesCS2D01G043500 chr2A 92.727 55 4 0 3702 3756 624401947 624402001 6.540000e-11 80.5
14 TraesCS2D01G043500 chr2B 94.376 1956 75 14 4702 6648 27737828 27735899 0.000000e+00 2970.0
15 TraesCS2D01G043500 chr2B 85.308 878 117 8 2841 3710 131889385 131890258 0.000000e+00 896.0
16 TraesCS2D01G043500 chr2B 84.703 876 122 8 2844 3710 131902099 131901227 0.000000e+00 865.0
17 TraesCS2D01G043500 chr2B 84.096 874 110 12 2844 3710 576807460 576806609 0.000000e+00 817.0
18 TraesCS2D01G043500 chr2B 82.554 877 117 14 2841 3695 419326318 419327180 0.000000e+00 739.0
19 TraesCS2D01G043500 chr2B 76.688 622 111 16 3914 4506 373900774 373901390 1.650000e-81 315.0
20 TraesCS2D01G043500 chr2B 83.142 261 42 2 1713 1972 90448275 90448016 3.670000e-58 237.0
21 TraesCS2D01G043500 chr2B 83.012 259 44 0 1714 1972 131288589 131288331 1.320000e-57 235.0
22 TraesCS2D01G043500 chr2B 91.200 125 9 1 7240 7362 331225134 331225010 1.360000e-37 169.0
23 TraesCS2D01G043500 chr6D 86.680 976 94 18 2844 3795 471074198 471073235 0.000000e+00 1050.0
24 TraesCS2D01G043500 chr6D 92.975 484 28 2 7381 7858 31804112 31803629 0.000000e+00 701.0
25 TraesCS2D01G043500 chr6D 91.444 187 13 1 7381 7564 409649625 409649439 3.640000e-63 254.0
26 TraesCS2D01G043500 chr6D 94.488 127 6 1 7238 7363 409650976 409650850 2.240000e-45 195.0
27 TraesCS2D01G043500 chr6D 90.551 127 9 2 7238 7362 371297859 371297984 1.760000e-36 165.0
28 TraesCS2D01G043500 chr6D 79.787 188 36 2 1242 1427 254239090 254238903 1.380000e-27 135.0
29 TraesCS2D01G043500 chr6D 96.296 81 3 0 7361 7441 31804075 31803995 4.950000e-27 134.0
30 TraesCS2D01G043500 chr6D 88.393 112 11 2 2574 2684 266670118 266670228 4.950000e-27 134.0
31 TraesCS2D01G043500 chr5B 84.012 1007 123 16 2844 3816 691410679 691409677 0.000000e+00 933.0
32 TraesCS2D01G043500 chr5B 78.990 733 97 29 1714 2406 656262796 656263511 1.560000e-121 448.0
33 TraesCS2D01G043500 chr5B 77.833 600 112 15 3915 4499 464317586 464316993 1.260000e-92 351.0
34 TraesCS2D01G043500 chr5B 77.667 600 113 16 3915 4499 464318933 464318340 5.840000e-91 346.0
35 TraesCS2D01G043500 chr5B 77.462 599 116 14 3915 4499 464320280 464319687 2.720000e-89 340.0
36 TraesCS2D01G043500 chr5B 77.258 598 115 16 3917 4499 464314893 464314302 1.640000e-86 331.0
37 TraesCS2D01G043500 chr5B 81.050 343 52 5 2064 2403 643451358 643451026 2.180000e-65 261.0
38 TraesCS2D01G043500 chr5B 83.462 260 43 0 1713 1972 282847115 282846856 7.880000e-60 243.0
39 TraesCS2D01G043500 chr5B 92.857 126 6 3 7240 7363 77812344 77812468 6.270000e-41 180.0
40 TraesCS2D01G043500 chr5B 98.077 52 1 0 7182 7233 395914617 395914566 3.020000e-14 91.6
41 TraesCS2D01G043500 chr4B 85.795 880 102 12 2841 3704 420100970 420101842 0.000000e+00 911.0
42 TraesCS2D01G043500 chr4B 91.387 476 40 1 7384 7858 550473526 550473051 0.000000e+00 651.0
43 TraesCS2D01G043500 chr4B 76.221 614 104 28 3916 4506 28632997 28633591 3.590000e-73 287.0
44 TraesCS2D01G043500 chr4B 75.327 612 118 16 3916 4497 672132676 672132068 6.050000e-66 263.0
45 TraesCS2D01G043500 chr4B 80.000 310 57 5 4164 4471 491794582 491794276 2.860000e-54 224.0
46 TraesCS2D01G043500 chr4B 96.154 52 2 0 7182 7233 409267131 409267182 1.410000e-12 86.1
47 TraesCS2D01G043500 chr4B 94.444 54 3 0 7185 7238 157960343 157960290 5.060000e-12 84.2
48 TraesCS2D01G043500 chr4B 79.612 103 11 2 3703 3795 563787688 563787790 1.830000e-06 65.8
49 TraesCS2D01G043500 chr6B 85.061 897 106 18 2841 3711 126862599 126863493 0.000000e+00 889.0
50 TraesCS2D01G043500 chr6B 86.341 820 81 13 2840 3635 21056450 21055638 0.000000e+00 865.0
51 TraesCS2D01G043500 chr6B 78.347 605 85 28 1837 2409 3878141 3878731 4.520000e-92 350.0
52 TraesCS2D01G043500 chr6B 75.791 632 102 22 3911 4513 518677328 518676719 1.010000e-68 272.0
53 TraesCS2D01G043500 chr5D 84.188 917 128 7 2841 3752 62527277 62526373 0.000000e+00 874.0
54 TraesCS2D01G043500 chr5D 89.855 483 42 3 7382 7858 20754882 20755363 1.450000e-171 614.0
55 TraesCS2D01G043500 chr5D 89.749 478 45 3 7381 7858 271455639 271456112 6.750000e-170 608.0
56 TraesCS2D01G043500 chr5D 77.036 614 90 27 3916 4502 552044762 552044173 9.910000e-79 305.0
57 TraesCS2D01G043500 chr5D 76.975 595 90 26 3929 4502 84689962 84690530 5.970000e-76 296.0
58 TraesCS2D01G043500 chr5D 88.991 109 8 4 2579 2684 538625984 538625877 1.780000e-26 132.0
59 TraesCS2D01G043500 chr5D 96.154 52 2 0 7182 7233 53755585 53755636 1.410000e-12 86.1
60 TraesCS2D01G043500 chr5D 96.154 52 2 0 7182 7233 271069291 271069342 1.410000e-12 86.1
61 TraesCS2D01G043500 chr7D 85.945 804 96 9 2841 3637 446365548 446366341 0.000000e+00 843.0
62 TraesCS2D01G043500 chr7D 84.405 840 99 17 2891 3710 126348244 126347417 0.000000e+00 797.0
63 TraesCS2D01G043500 chr7D 80.685 730 100 21 1709 2402 439631875 439631151 5.400000e-146 529.0
64 TraesCS2D01G043500 chr7D 74.814 671 129 30 5038 5689 611756683 611757332 4.680000e-67 267.0
65 TraesCS2D01G043500 chr7D 75.133 563 110 21 5141 5688 446997649 446997102 3.670000e-58 237.0
66 TraesCS2D01G043500 chr7D 82.540 252 37 2 4261 4505 628134838 628135089 1.720000e-51 215.0
67 TraesCS2D01G043500 chr7D 88.288 111 12 1 2575 2684 167939711 167939821 1.780000e-26 132.0
68 TraesCS2D01G043500 chr7D 88.312 77 8 1 3634 3710 94755470 94755395 3.020000e-14 91.6
69 TraesCS2D01G043500 chr4D 86.148 758 87 8 2951 3706 459064883 459065624 0.000000e+00 802.0
70 TraesCS2D01G043500 chr4D 81.560 705 86 16 1713 2390 507914604 507915291 6.940000e-150 542.0
71 TraesCS2D01G043500 chr4D 88.462 104 12 0 2581 2684 316525127 316525024 8.280000e-25 126.0
72 TraesCS2D01G043500 chr3B 84.576 778 105 12 2869 3637 420218269 420217498 0.000000e+00 758.0
73 TraesCS2D01G043500 chr3B 88.837 430 36 2 7438 7858 70327209 70327635 1.170000e-142 518.0
74 TraesCS2D01G043500 chr3B 79.945 733 110 20 1701 2404 378494948 378495672 9.110000e-139 505.0
75 TraesCS2D01G043500 chr3B 90.659 364 32 2 7493 7855 32793669 32794031 4.270000e-132 483.0
76 TraesCS2D01G043500 chr3B 83.268 257 42 1 1710 1966 698625994 698626249 1.320000e-57 235.0
77 TraesCS2D01G043500 chr3B 92.913 127 7 1 7238 7362 70317222 70317348 4.850000e-42 183.0
78 TraesCS2D01G043500 chr3B 90.551 127 10 1 7238 7362 379096415 379096289 4.880000e-37 167.0
79 TraesCS2D01G043500 chr3B 100.000 30 0 0 4601 4630 50656305 50656276 1.000000e-03 56.5
80 TraesCS2D01G043500 chr7B 82.483 862 131 9 2844 3698 120724960 120724112 0.000000e+00 737.0
81 TraesCS2D01G043500 chr7B 79.396 728 101 24 1714 2400 69353485 69354204 1.190000e-127 468.0
82 TraesCS2D01G043500 chr7B 78.711 714 115 23 1714 2401 617785156 617784454 7.240000e-120 442.0
83 TraesCS2D01G043500 chr7B 74.749 697 134 32 5038 5714 701286540 701287214 2.800000e-69 274.0
84 TraesCS2D01G043500 chr7B 74.493 592 115 28 5141 5714 464344758 464344185 2.860000e-54 224.0
85 TraesCS2D01G043500 chr4A 81.372 977 112 24 2844 3798 87969857 87968929 0.000000e+00 732.0
86 TraesCS2D01G043500 chr4A 92.243 477 33 3 7381 7854 573376038 573376513 0.000000e+00 673.0
87 TraesCS2D01G043500 chr4A 81.006 716 103 15 1713 2402 684960152 684959444 8.980000e-149 538.0
88 TraesCS2D01G043500 chr4A 79.809 733 102 24 1713 2415 656485050 656484334 7.090000e-135 492.0
89 TraesCS2D01G043500 chr4A 78.175 559 86 17 3926 4452 596715467 596714913 2.740000e-84 324.0
90 TraesCS2D01G043500 chr4A 82.946 258 44 0 1714 1971 313643940 313643683 4.740000e-57 233.0
91 TraesCS2D01G043500 chr4A 91.406 128 7 3 7238 7362 585592980 585593106 1.050000e-38 172.0
92 TraesCS2D01G043500 chr4A 91.358 81 7 0 7361 7441 573376075 573376155 2.320000e-20 111.0
93 TraesCS2D01G043500 chr1D 84.444 675 99 6 5087 5755 9011377 9010703 0.000000e+00 660.0
94 TraesCS2D01G043500 chr1D 83.142 261 43 1 1713 1972 377015630 377015370 3.670000e-58 237.0
95 TraesCS2D01G043500 chr1D 96.154 52 2 0 7182 7233 113903440 113903491 1.410000e-12 86.1
96 TraesCS2D01G043500 chr1D 97.959 49 1 0 7185 7233 491908628 491908580 1.410000e-12 86.1
97 TraesCS2D01G043500 chr7A 82.222 720 91 18 1713 2404 625183552 625182842 3.160000e-163 586.0
98 TraesCS2D01G043500 chr7A 80.812 714 104 15 1713 2400 158344032 158344738 5.400000e-146 529.0
99 TraesCS2D01G043500 chr7A 74.820 695 137 28 5038 5714 701693454 701694128 6.010000e-71 279.0
100 TraesCS2D01G043500 chr7A 74.363 589 121 24 5141 5714 498230595 498230022 2.860000e-54 224.0
101 TraesCS2D01G043500 chr7A 91.262 103 8 1 2583 2684 350561179 350561077 1.060000e-28 139.0
102 TraesCS2D01G043500 chr7A 96.296 54 2 0 7182 7235 605095707 605095760 1.090000e-13 89.8
103 TraesCS2D01G043500 chr1B 90.083 363 35 1 7496 7858 96504937 96504576 3.320000e-128 470.0
104 TraesCS2D01G043500 chr1B 79.322 590 90 20 1712 2272 59928280 59928866 1.240000e-102 385.0
105 TraesCS2D01G043500 chr1B 79.019 591 91 19 1712 2272 60021851 60022438 2.680000e-99 374.0
106 TraesCS2D01G043500 chr1B 78.105 612 105 21 3915 4506 4462501 4461899 2.090000e-95 361.0
107 TraesCS2D01G043500 chr1B 83.268 257 43 0 1714 1970 68275184 68274928 3.670000e-58 237.0
108 TraesCS2D01G043500 chr1B 83.012 259 44 0 1714 1972 535317681 535317423 1.320000e-57 235.0
109 TraesCS2D01G043500 chr1B 82.443 262 39 5 3912 4168 42186492 42186233 1.030000e-53 222.0
110 TraesCS2D01G043500 chr1B 92.126 127 8 1 7238 7362 96506394 96506268 2.250000e-40 178.0
111 TraesCS2D01G043500 chr1B 89.720 107 10 1 2579 2684 137451410 137451516 1.380000e-27 135.0
112 TraesCS2D01G043500 chr1B 88.889 108 11 1 2578 2684 133170234 133170127 1.780000e-26 132.0
113 TraesCS2D01G043500 chrUn 78.630 613 100 23 3915 4506 292248831 292249433 2.070000e-100 377.0
114 TraesCS2D01G043500 chrUn 83.946 299 46 2 1975 2272 425799558 425799261 1.290000e-72 285.0
115 TraesCS2D01G043500 chr3A 85.374 294 25 6 2844 3119 19610681 19610974 9.980000e-74 289.0
116 TraesCS2D01G043500 chr3A 97.959 49 1 0 7185 7233 726487955 726487907 1.410000e-12 86.1
117 TraesCS2D01G043500 chr3D 77.597 491 91 15 1237 1713 251688726 251688241 6.010000e-71 279.0
118 TraesCS2D01G043500 chr3D 75.447 615 115 25 3913 4506 463681503 463682102 4.680000e-67 267.0
119 TraesCS2D01G043500 chr3D 91.667 132 9 1 7233 7362 98595575 98595706 1.740000e-41 182.0
120 TraesCS2D01G043500 chr3D 92.453 53 4 0 1237 1289 584569903 584569851 8.460000e-10 76.8
121 TraesCS2D01G043500 chr6A 77.857 420 78 10 485 898 611797257 611797667 6.090000e-61 246.0
122 TraesCS2D01G043500 chr6A 73.473 622 125 23 3916 4504 592356555 592355941 1.730000e-46 198.0
123 TraesCS2D01G043500 chr6A 89.216 102 11 0 2583 2684 596077339 596077440 2.300000e-25 128.0
124 TraesCS2D01G043500 chr1A 73.333 735 136 34 1707 2408 586061478 586062185 4.780000e-52 217.0
125 TraesCS2D01G043500 chr1A 78.922 204 37 6 1226 1425 241888088 241888289 4.950000e-27 134.0
126 TraesCS2D01G043500 chr5A 76.129 310 56 11 1376 1672 673551235 673551539 6.360000e-31 147.0
127 TraesCS2D01G043500 chr5A 82.119 151 12 8 3613 3751 522098913 522099060 1.790000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G043500 chr2D 15628538 15636400 7862 True 14521.0 14521 100.0000 1 7863 1 chr2D.!!$R2 7862
1 TraesCS2D01G043500 chr2D 7177878 7178598 720 True 505.0 505 80.1650 1714 2402 1 chr2D.!!$R1 688
2 TraesCS2D01G043500 chr2A 17679272 17684426 5154 True 2841.5 4187 87.5010 1037 7154 2 chr2A.!!$R5 6117
3 TraesCS2D01G043500 chr2A 17693461 17694482 1021 True 1273.0 1273 89.1010 1 1041 1 chr2A.!!$R1 1040
4 TraesCS2D01G043500 chr2A 323511037 323511744 707 True 577.0 577 82.0580 1713 2402 1 chr2A.!!$R3 689
5 TraesCS2D01G043500 chr2A 214714474 214715177 703 False 460.0 460 79.5050 1714 2402 1 chr2A.!!$F1 688
6 TraesCS2D01G043500 chr2A 478165335 478165917 582 True 274.0 274 76.1980 3913 4489 1 chr2A.!!$R4 576
7 TraesCS2D01G043500 chr2B 27735899 27737828 1929 True 2970.0 2970 94.3760 4702 6648 1 chr2B.!!$R1 1946
8 TraesCS2D01G043500 chr2B 131889385 131890258 873 False 896.0 896 85.3080 2841 3710 1 chr2B.!!$F1 869
9 TraesCS2D01G043500 chr2B 131901227 131902099 872 True 865.0 865 84.7030 2844 3710 1 chr2B.!!$R4 866
10 TraesCS2D01G043500 chr2B 576806609 576807460 851 True 817.0 817 84.0960 2844 3710 1 chr2B.!!$R6 866
11 TraesCS2D01G043500 chr2B 419326318 419327180 862 False 739.0 739 82.5540 2841 3695 1 chr2B.!!$F3 854
12 TraesCS2D01G043500 chr2B 373900774 373901390 616 False 315.0 315 76.6880 3914 4506 1 chr2B.!!$F2 592
13 TraesCS2D01G043500 chr6D 471073235 471074198 963 True 1050.0 1050 86.6800 2844 3795 1 chr6D.!!$R2 951
14 TraesCS2D01G043500 chr6D 409649439 409650976 1537 True 224.5 254 92.9660 7238 7564 2 chr6D.!!$R4 326
15 TraesCS2D01G043500 chr5B 691409677 691410679 1002 True 933.0 933 84.0120 2844 3816 1 chr5B.!!$R4 972
16 TraesCS2D01G043500 chr5B 656262796 656263511 715 False 448.0 448 78.9900 1714 2406 1 chr5B.!!$F2 692
17 TraesCS2D01G043500 chr5B 464314302 464320280 5978 True 342.0 351 77.5550 3915 4499 4 chr5B.!!$R5 584
18 TraesCS2D01G043500 chr4B 420100970 420101842 872 False 911.0 911 85.7950 2841 3704 1 chr4B.!!$F3 863
19 TraesCS2D01G043500 chr4B 28632997 28633591 594 False 287.0 287 76.2210 3916 4506 1 chr4B.!!$F1 590
20 TraesCS2D01G043500 chr4B 672132068 672132676 608 True 263.0 263 75.3270 3916 4497 1 chr4B.!!$R4 581
21 TraesCS2D01G043500 chr6B 126862599 126863493 894 False 889.0 889 85.0610 2841 3711 1 chr6B.!!$F2 870
22 TraesCS2D01G043500 chr6B 21055638 21056450 812 True 865.0 865 86.3410 2840 3635 1 chr6B.!!$R1 795
23 TraesCS2D01G043500 chr6B 3878141 3878731 590 False 350.0 350 78.3470 1837 2409 1 chr6B.!!$F1 572
24 TraesCS2D01G043500 chr6B 518676719 518677328 609 True 272.0 272 75.7910 3911 4513 1 chr6B.!!$R2 602
25 TraesCS2D01G043500 chr5D 62526373 62527277 904 True 874.0 874 84.1880 2841 3752 1 chr5D.!!$R1 911
26 TraesCS2D01G043500 chr5D 552044173 552044762 589 True 305.0 305 77.0360 3916 4502 1 chr5D.!!$R3 586
27 TraesCS2D01G043500 chr5D 84689962 84690530 568 False 296.0 296 76.9750 3929 4502 1 chr5D.!!$F3 573
28 TraesCS2D01G043500 chr7D 446365548 446366341 793 False 843.0 843 85.9450 2841 3637 1 chr7D.!!$F2 796
29 TraesCS2D01G043500 chr7D 126347417 126348244 827 True 797.0 797 84.4050 2891 3710 1 chr7D.!!$R2 819
30 TraesCS2D01G043500 chr7D 439631151 439631875 724 True 529.0 529 80.6850 1709 2402 1 chr7D.!!$R3 693
31 TraesCS2D01G043500 chr7D 611756683 611757332 649 False 267.0 267 74.8140 5038 5689 1 chr7D.!!$F3 651
32 TraesCS2D01G043500 chr7D 446997102 446997649 547 True 237.0 237 75.1330 5141 5688 1 chr7D.!!$R4 547
33 TraesCS2D01G043500 chr4D 459064883 459065624 741 False 802.0 802 86.1480 2951 3706 1 chr4D.!!$F1 755
34 TraesCS2D01G043500 chr4D 507914604 507915291 687 False 542.0 542 81.5600 1713 2390 1 chr4D.!!$F2 677
35 TraesCS2D01G043500 chr3B 420217498 420218269 771 True 758.0 758 84.5760 2869 3637 1 chr3B.!!$R3 768
36 TraesCS2D01G043500 chr3B 378494948 378495672 724 False 505.0 505 79.9450 1701 2404 1 chr3B.!!$F4 703
37 TraesCS2D01G043500 chr7B 120724112 120724960 848 True 737.0 737 82.4830 2844 3698 1 chr7B.!!$R1 854
38 TraesCS2D01G043500 chr7B 69353485 69354204 719 False 468.0 468 79.3960 1714 2400 1 chr7B.!!$F1 686
39 TraesCS2D01G043500 chr7B 617784454 617785156 702 True 442.0 442 78.7110 1714 2401 1 chr7B.!!$R3 687
40 TraesCS2D01G043500 chr7B 701286540 701287214 674 False 274.0 274 74.7490 5038 5714 1 chr7B.!!$F2 676
41 TraesCS2D01G043500 chr7B 464344185 464344758 573 True 224.0 224 74.4930 5141 5714 1 chr7B.!!$R2 573
42 TraesCS2D01G043500 chr4A 87968929 87969857 928 True 732.0 732 81.3720 2844 3798 1 chr4A.!!$R1 954
43 TraesCS2D01G043500 chr4A 684959444 684960152 708 True 538.0 538 81.0060 1713 2402 1 chr4A.!!$R5 689
44 TraesCS2D01G043500 chr4A 656484334 656485050 716 True 492.0 492 79.8090 1713 2415 1 chr4A.!!$R4 702
45 TraesCS2D01G043500 chr4A 596714913 596715467 554 True 324.0 324 78.1750 3926 4452 1 chr4A.!!$R3 526
46 TraesCS2D01G043500 chr1D 9010703 9011377 674 True 660.0 660 84.4440 5087 5755 1 chr1D.!!$R1 668
47 TraesCS2D01G043500 chr7A 625182842 625183552 710 True 586.0 586 82.2220 1713 2404 1 chr7A.!!$R3 691
48 TraesCS2D01G043500 chr7A 158344032 158344738 706 False 529.0 529 80.8120 1713 2400 1 chr7A.!!$F1 687
49 TraesCS2D01G043500 chr7A 701693454 701694128 674 False 279.0 279 74.8200 5038 5714 1 chr7A.!!$F3 676
50 TraesCS2D01G043500 chr7A 498230022 498230595 573 True 224.0 224 74.3630 5141 5714 1 chr7A.!!$R2 573
51 TraesCS2D01G043500 chr1B 59928280 59928866 586 False 385.0 385 79.3220 1712 2272 1 chr1B.!!$F1 560
52 TraesCS2D01G043500 chr1B 60021851 60022438 587 False 374.0 374 79.0190 1712 2272 1 chr1B.!!$F2 560
53 TraesCS2D01G043500 chr1B 4461899 4462501 602 True 361.0 361 78.1050 3915 4506 1 chr1B.!!$R1 591
54 TraesCS2D01G043500 chr1B 96504576 96506394 1818 True 324.0 470 91.1045 7238 7858 2 chr1B.!!$R6 620
55 TraesCS2D01G043500 chrUn 292248831 292249433 602 False 377.0 377 78.6300 3915 4506 1 chrUn.!!$F1 591
56 TraesCS2D01G043500 chr3D 463681503 463682102 599 False 267.0 267 75.4470 3913 4506 1 chr3D.!!$F2 593
57 TraesCS2D01G043500 chr1A 586061478 586062185 707 False 217.0 217 73.3330 1707 2408 1 chr1A.!!$F2 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1002 0.107459 AATCTTCGCCTCTGGAAGCC 60.107 55.0 0.00 0.0 40.50 4.35 F
1543 1580 0.103937 AACAAATTGGTGTGTGGCCG 59.896 50.0 0.00 0.0 0.00 6.13 F
2687 2789 0.742505 CGAACCACCTAGCGACCATA 59.257 55.0 0.00 0.0 0.00 2.74 F
2766 2868 0.034756 TCCACTCACACCATTCACGG 59.965 55.0 0.00 0.0 0.00 4.94 F
4531 10130 0.250338 GGTCAACCGTTCTCTTGGCT 60.250 55.0 0.00 0.0 0.00 4.75 F
4785 10406 0.108424 GAGTCCATGCGAGCTCAGTT 60.108 55.0 15.40 0.0 0.00 3.16 F
5973 11608 0.305617 CGATCATGCACGTTGGATGG 59.694 55.0 15.47 2.7 44.85 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2747 2849 0.034756 CCGTGAATGGTGTGAGTGGA 59.965 55.000 0.00 0.0 0.00 4.02 R
2749 2851 0.034756 TCCCGTGAATGGTGTGAGTG 59.965 55.000 0.00 0.0 0.00 3.51 R
4654 10273 0.102481 CACGTAATCCGGTCTCCCAG 59.898 60.000 0.00 0.0 42.24 4.45 R
4656 10275 0.179119 CACACGTAATCCGGTCTCCC 60.179 60.000 0.00 0.0 42.24 4.30 R
5975 11610 1.274167 GGTCACCACGTCCTACATCAA 59.726 52.381 0.00 0.0 0.00 2.57 R
6334 11976 2.203788 TCAGGCCGGAACTCCAGT 60.204 61.111 5.05 0.0 35.14 4.00 R
7532 14500 0.109272 GTTGTCGAGAGCATGACCGA 60.109 55.000 0.00 0.0 34.18 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 72 3.969553 TGGCTAGCTAAGAAGTGAGAGA 58.030 45.455 15.72 0.00 0.00 3.10
112 116 6.936968 ACTTGTCCTAAGGTTCAGATTACT 57.063 37.500 0.00 0.00 0.00 2.24
117 121 6.606395 TGTCCTAAGGTTCAGATTACTACCTC 59.394 42.308 0.00 0.00 40.03 3.85
118 122 5.826737 TCCTAAGGTTCAGATTACTACCTCG 59.173 44.000 0.00 0.00 40.03 4.63
161 165 2.107726 ACACCCCTAAACTCAGGAAACC 59.892 50.000 0.00 0.00 38.00 3.27
162 166 1.350019 ACCCCTAAACTCAGGAAACCG 59.650 52.381 0.00 0.00 38.00 4.44
163 167 1.450025 CCCTAAACTCAGGAAACCGC 58.550 55.000 0.00 0.00 38.00 5.68
181 185 2.618045 CCGCTCAAAATACACCCCTTCT 60.618 50.000 0.00 0.00 0.00 2.85
184 188 4.382685 CGCTCAAAATACACCCCTTCTCTA 60.383 45.833 0.00 0.00 0.00 2.43
189 193 6.940298 TCAAAATACACCCCTTCTCTAAGTTG 59.060 38.462 0.00 0.00 0.00 3.16
194 198 2.157989 ACCCCTTCTCTAAGTTGACCCT 60.158 50.000 0.00 0.00 0.00 4.34
195 199 2.913617 CCCCTTCTCTAAGTTGACCCTT 59.086 50.000 0.00 0.00 0.00 3.95
196 200 3.307762 CCCCTTCTCTAAGTTGACCCTTG 60.308 52.174 0.00 0.00 0.00 3.61
202 206 5.751586 TCTCTAAGTTGACCCTTGTTTTGT 58.248 37.500 0.00 0.00 0.00 2.83
218 222 1.763546 TTGTCCTGCCATGTCACCGA 61.764 55.000 0.00 0.00 0.00 4.69
239 243 2.300956 TTCTCCTCTCTCTGCACACT 57.699 50.000 0.00 0.00 0.00 3.55
240 244 1.832883 TCTCCTCTCTCTGCACACTC 58.167 55.000 0.00 0.00 0.00 3.51
256 260 3.573772 CTCGTCCGCCAAGTCAGCA 62.574 63.158 0.00 0.00 0.00 4.41
282 286 6.702329 TCTTGTGAGTTATTCTTTCTCCTCC 58.298 40.000 0.00 0.00 0.00 4.30
287 291 3.133183 AGTTATTCTTTCTCCTCCCTCGC 59.867 47.826 0.00 0.00 0.00 5.03
303 307 0.687354 TCGCTTGGCTCTCTCCTTTT 59.313 50.000 0.00 0.00 0.00 2.27
308 312 3.558958 GCTTGGCTCTCTCCTTTTTCTCT 60.559 47.826 0.00 0.00 0.00 3.10
332 336 3.710722 CCTGAGAGGCGCCCAACT 61.711 66.667 26.15 20.38 0.00 3.16
333 337 2.435586 CTGAGAGGCGCCCAACTG 60.436 66.667 26.15 14.25 0.00 3.16
334 338 4.704833 TGAGAGGCGCCCAACTGC 62.705 66.667 26.15 13.87 0.00 4.40
341 345 4.988598 CGCCCAACTGCCTGTCGT 62.989 66.667 0.00 0.00 0.00 4.34
342 346 2.594592 GCCCAACTGCCTGTCGTT 60.595 61.111 0.00 0.00 0.00 3.85
343 347 2.908073 GCCCAACTGCCTGTCGTTG 61.908 63.158 0.00 0.00 40.03 4.10
344 348 1.525995 CCCAACTGCCTGTCGTTGT 60.526 57.895 0.00 0.00 38.99 3.32
351 355 2.639286 CCTGTCGTTGTTGCCTGC 59.361 61.111 0.00 0.00 0.00 4.85
352 356 1.893808 CCTGTCGTTGTTGCCTGCT 60.894 57.895 0.00 0.00 0.00 4.24
365 369 2.688666 CTGCTGGGCCCTACCTCA 60.689 66.667 25.70 12.11 39.10 3.86
375 379 1.627297 CCCTACCTCAACCCAGCCTC 61.627 65.000 0.00 0.00 0.00 4.70
400 404 2.753452 TCATCTCCTACAACTCACCGTC 59.247 50.000 0.00 0.00 0.00 4.79
403 407 1.445582 CCTACAACTCACCGTCGCC 60.446 63.158 0.00 0.00 0.00 5.54
404 408 1.585006 CTACAACTCACCGTCGCCT 59.415 57.895 0.00 0.00 0.00 5.52
416 420 3.700970 TCGCCTCCCATGACGCAA 61.701 61.111 0.00 0.00 0.00 4.85
442 446 5.899299 CATAGATGGATAGTCGATGATGCA 58.101 41.667 6.25 6.25 32.53 3.96
466 470 1.305201 ACAAGGTACAACACGCCAAG 58.695 50.000 0.00 0.00 0.00 3.61
468 472 1.170290 AAGGTACAACACGCCAAGGC 61.170 55.000 0.00 0.00 37.85 4.35
476 480 0.957395 ACACGCCAAGGCATCAAGAG 60.957 55.000 12.19 0.00 42.06 2.85
486 490 0.674895 GCATCAAGAGCACGGAAGGT 60.675 55.000 0.00 0.00 0.00 3.50
502 506 1.573108 AGGTCGACTTCACCCATCAT 58.427 50.000 16.46 0.00 33.96 2.45
509 513 3.535561 GACTTCACCCATCATCGTGATT 58.464 45.455 0.00 0.00 38.72 2.57
554 559 7.969536 AAGATGATTTTGTATCCTATCGGTG 57.030 36.000 0.00 0.00 0.00 4.94
597 602 7.791766 ACTAGGATTCCTTCATATCCTTGAGAA 59.208 37.037 11.25 0.00 46.64 2.87
621 626 1.154197 GGGGTTTGCTCAGACGTAAC 58.846 55.000 0.00 0.00 0.00 2.50
627 632 1.762419 TGCTCAGACGTAACGACAAC 58.238 50.000 0.00 0.00 0.00 3.32
634 639 4.207635 TCAGACGTAACGACAACAAACATC 59.792 41.667 0.00 0.00 0.00 3.06
651 656 9.754382 AACAAACATCATAAAGATAATCATGGC 57.246 29.630 0.00 0.00 34.43 4.40
652 657 8.916062 ACAAACATCATAAAGATAATCATGGCA 58.084 29.630 0.00 0.00 34.43 4.92
653 658 9.752961 CAAACATCATAAAGATAATCATGGCAA 57.247 29.630 0.00 0.00 34.43 4.52
656 661 9.304335 ACATCATAAAGATAATCATGGCAATCA 57.696 29.630 0.00 0.00 34.43 2.57
670 675 4.806892 TGGCAATCATGGATAAATGACCT 58.193 39.130 0.00 0.00 39.32 3.85
674 679 6.435277 GGCAATCATGGATAAATGACCTATGT 59.565 38.462 0.00 0.00 39.32 2.29
740 745 4.605640 TGAATAGCGATGATGATGGTGA 57.394 40.909 0.00 0.00 0.00 4.02
743 748 0.249615 AGCGATGATGATGGTGACGG 60.250 55.000 0.00 0.00 0.00 4.79
751 756 0.690192 TGATGGTGACGGTGGTTGAT 59.310 50.000 0.00 0.00 0.00 2.57
754 759 0.250124 TGGTGACGGTGGTTGATGTC 60.250 55.000 0.00 0.00 0.00 3.06
773 778 0.905357 CGGAGTCTCCTTGATTGGGT 59.095 55.000 17.00 0.00 33.30 4.51
781 786 0.457035 CCTTGATTGGGTTGATGGCG 59.543 55.000 0.00 0.00 0.00 5.69
788 793 3.053291 GGTTGATGGCGTGGCGAA 61.053 61.111 0.00 0.00 0.00 4.70
804 809 1.026718 CGAAGCCCTTCTGCCGATTT 61.027 55.000 6.48 0.00 37.44 2.17
810 815 0.464554 CCTTCTGCCGATTTCCCCTC 60.465 60.000 0.00 0.00 0.00 4.30
811 816 0.464554 CTTCTGCCGATTTCCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
844 849 0.111253 AGGCAGGGTTCTTGGTTCTG 59.889 55.000 0.00 0.00 0.00 3.02
846 851 1.239347 GCAGGGTTCTTGGTTCTGTC 58.761 55.000 0.00 0.00 0.00 3.51
854 859 2.546778 TCTTGGTTCTGTCGTGTGTTC 58.453 47.619 0.00 0.00 0.00 3.18
856 861 1.934589 TGGTTCTGTCGTGTGTTCTG 58.065 50.000 0.00 0.00 0.00 3.02
884 889 4.671831 TCAGTATCTCCTCTCCATGATCC 58.328 47.826 0.00 0.00 0.00 3.36
885 890 4.106987 TCAGTATCTCCTCTCCATGATCCA 59.893 45.833 0.00 0.00 0.00 3.41
909 915 2.425143 CATGGGGTGCATGAAGTAGT 57.575 50.000 0.00 0.00 32.09 2.73
913 919 2.084546 GGGGTGCATGAAGTAGTTGAC 58.915 52.381 0.00 0.00 0.00 3.18
918 924 1.740025 GCATGAAGTAGTTGACCAGGC 59.260 52.381 0.00 0.00 0.00 4.85
971 977 4.735132 GCAGGCACGCTCGTACCA 62.735 66.667 13.46 0.00 34.06 3.25
994 1000 1.012841 GCAATCTTCGCCTCTGGAAG 58.987 55.000 0.00 0.00 41.74 3.46
996 1002 0.107459 AATCTTCGCCTCTGGAAGCC 60.107 55.000 0.00 0.00 40.50 4.35
1003 1009 1.348775 GCCTCTGGAAGCCCCTATGT 61.349 60.000 0.00 0.00 35.38 2.29
1029 1035 2.749800 GCTTTCTCTCCCACTTGGTTGT 60.750 50.000 0.00 0.00 34.77 3.32
1044 1050 5.183140 ACTTGGTTGTTGCTTCATATGGTAC 59.817 40.000 2.13 0.00 0.00 3.34
1046 1052 3.486875 GGTTGTTGCTTCATATGGTACGC 60.487 47.826 2.13 1.63 0.00 4.42
1074 1080 9.754382 ATTATCACACCAATTAGCATGATTTTC 57.246 29.630 0.00 0.00 0.00 2.29
1080 1086 4.266029 CCAATTAGCATGATTTTCGCACAC 59.734 41.667 0.00 0.00 0.00 3.82
1083 1089 0.986992 GCATGATTTTCGCACACTGC 59.013 50.000 0.00 0.00 40.69 4.40
1097 1103 3.790123 GCACACTGCTTGTTGTTCTCTTC 60.790 47.826 0.00 0.00 40.96 2.87
1119 1125 8.394040 TCTTCTTTAATTCTTCAAATCCCCTCT 58.606 33.333 0.00 0.00 0.00 3.69
1156 1162 6.767423 CCAGGTGAAATCAAACAAAAAGGATT 59.233 34.615 0.00 0.00 0.00 3.01
1158 1164 6.701400 AGGTGAAATCAAACAAAAAGGATTCG 59.299 34.615 0.00 0.00 0.00 3.34
1160 1166 5.174761 TGAAATCAAACAAAAAGGATTCGCG 59.825 36.000 0.00 0.00 0.00 5.87
1183 1189 6.609412 GCGAACGCGATAAAATCATGAAAATC 60.609 38.462 15.93 0.00 40.82 2.17
1221 1239 6.630045 GCAAAACAAGATGCAAAATTGAACTC 59.370 34.615 13.81 0.00 42.12 3.01
1222 1240 7.676807 GCAAAACAAGATGCAAAATTGAACTCA 60.677 33.333 13.81 0.00 42.12 3.41
1230 1248 5.698832 TGCAAAATTGAACTCATCGGTTAG 58.301 37.500 0.00 0.00 0.00 2.34
1235 1253 4.811969 TTGAACTCATCGGTTAGCCTAA 57.188 40.909 0.00 0.00 0.00 2.69
1240 1260 6.093495 TGAACTCATCGGTTAGCCTAAATTTG 59.907 38.462 0.00 0.00 0.00 2.32
1245 1265 6.657541 TCATCGGTTAGCCTAAATTTGTTCTT 59.342 34.615 0.00 0.00 0.00 2.52
1252 1272 9.181805 GTTAGCCTAAATTTGTTCTTTTCACTC 57.818 33.333 0.00 0.00 0.00 3.51
1261 1281 7.687941 TTTGTTCTTTTCACTCTCTCTTTGT 57.312 32.000 0.00 0.00 0.00 2.83
1291 1311 8.779354 AGAATCTGTATCTAAAATAATCCGGC 57.221 34.615 0.00 0.00 0.00 6.13
1330 1350 5.804944 TTGGAATTTGGAAAATGAGAGCA 57.195 34.783 0.00 0.00 0.00 4.26
1332 1352 4.588106 TGGAATTTGGAAAATGAGAGCACA 59.412 37.500 0.00 0.00 0.00 4.57
1333 1353 4.925646 GGAATTTGGAAAATGAGAGCACAC 59.074 41.667 0.00 0.00 0.00 3.82
1340 1360 3.996921 AAATGAGAGCACACAGAGGAT 57.003 42.857 0.00 0.00 0.00 3.24
1369 1389 4.002982 TGTGAGAACGGAATTGATCAAGG 58.997 43.478 14.54 5.77 0.00 3.61
1373 1393 1.755179 ACGGAATTGATCAAGGCCAG 58.245 50.000 22.16 17.78 0.00 4.85
1375 1395 1.672881 CGGAATTGATCAAGGCCAGTC 59.327 52.381 22.16 6.69 0.00 3.51
1397 1417 1.470098 CCCTCCAACGAAGAGCAATTG 59.530 52.381 0.00 0.00 0.00 2.32
1398 1418 1.135575 CCTCCAACGAAGAGCAATTGC 60.136 52.381 23.05 23.05 42.49 3.56
1408 1429 2.601905 AGAGCAATTGCCTTTCCAACT 58.398 42.857 26.45 4.68 43.38 3.16
1432 1453 7.715249 ACTGCTCAATTGTTTCTCTAAGTGTTA 59.285 33.333 5.13 0.00 0.00 2.41
1446 1467 9.120538 TCTCTAAGTGTTATTTGGCATATTTCC 57.879 33.333 0.00 0.00 0.00 3.13
1447 1468 8.815565 TCTAAGTGTTATTTGGCATATTTCCA 57.184 30.769 0.00 0.00 0.00 3.53
1448 1469 9.249053 TCTAAGTGTTATTTGGCATATTTCCAA 57.751 29.630 0.00 2.80 41.47 3.53
1452 1488 6.420604 GTGTTATTTGGCATATTTCCAATCCG 59.579 38.462 6.95 0.00 42.57 4.18
1458 1494 4.218200 TGGCATATTTCCAATCCGCATTAG 59.782 41.667 0.00 0.00 0.00 1.73
1462 1498 6.349611 GCATATTTCCAATCCGCATTAGTGAT 60.350 38.462 0.00 0.00 0.00 3.06
1467 1503 1.597742 ATCCGCATTAGTGATGTGCC 58.402 50.000 3.00 0.00 43.42 5.01
1473 1509 3.433274 CGCATTAGTGATGTGCCGATAAT 59.567 43.478 0.00 0.00 39.22 1.28
1474 1510 4.667415 CGCATTAGTGATGTGCCGATAATG 60.667 45.833 0.00 0.00 39.22 1.90
1476 1512 5.049474 GCATTAGTGATGTGCCGATAATGAA 60.049 40.000 6.87 0.00 38.07 2.57
1487 1523 7.195646 TGTGCCGATAATGAATCAAAATTCTC 58.804 34.615 0.00 0.00 41.63 2.87
1489 1525 7.864379 GTGCCGATAATGAATCAAAATTCTCAT 59.136 33.333 0.00 0.00 41.63 2.90
1543 1580 0.103937 AACAAATTGGTGTGTGGCCG 59.896 50.000 0.00 0.00 0.00 6.13
1568 1605 5.106157 CCTCATTGGCTTCTACGAAACAAAT 60.106 40.000 0.00 0.00 0.00 2.32
1572 1609 5.759506 TGGCTTCTACGAAACAAATCAAA 57.240 34.783 0.00 0.00 0.00 2.69
1579 1616 9.450807 CTTCTACGAAACAAATCAAATCACTTT 57.549 29.630 0.00 0.00 0.00 2.66
1619 1656 6.633856 AGCCCTTATATTTGTTCAAAAGCTG 58.366 36.000 2.11 0.00 0.00 4.24
1650 1687 9.237846 CAAAAGTTTCAGATTTCTAACCTTGTC 57.762 33.333 0.00 0.00 0.00 3.18
1654 1691 5.977489 TCAGATTTCTAACCTTGTCGAGA 57.023 39.130 0.00 0.00 0.00 4.04
1657 1694 6.152831 TCAGATTTCTAACCTTGTCGAGATCA 59.847 38.462 0.00 0.00 0.00 2.92
1666 1703 3.868077 CCTTGTCGAGATCATGTTCCTTC 59.132 47.826 0.00 0.00 0.00 3.46
1667 1704 4.498241 CTTGTCGAGATCATGTTCCTTCA 58.502 43.478 0.00 0.00 0.00 3.02
1702 1739 3.639716 TCGCATTTTGCAATGTTGAGA 57.360 38.095 0.00 3.12 45.36 3.27
1716 1753 2.111384 GTTGAGAGGGCCACATCTAGA 58.889 52.381 6.18 0.00 0.00 2.43
1800 1837 6.872020 ACTCGAGATTGAACCGAAAAGAAATA 59.128 34.615 21.68 0.00 31.59 1.40
1809 1846 7.657336 TGAACCGAAAAGAAATAAGCTGAATT 58.343 30.769 0.00 0.00 0.00 2.17
1811 1848 9.620660 GAACCGAAAAGAAATAAGCTGAATTTA 57.379 29.630 7.16 0.00 0.00 1.40
1878 1915 5.241506 CCAACACTGGCTCTCTTGATTTTAA 59.758 40.000 0.00 0.00 35.39 1.52
2009 2076 6.314784 CCTAATTAAGCACGGAGAAAACTTG 58.685 40.000 0.00 0.00 0.00 3.16
2020 2087 4.438744 CGGAGAAAACTTGGCCACAATATC 60.439 45.833 3.88 1.31 35.73 1.63
2075 2143 6.796705 TTTTCTCGGCTAAAGTTTAAGAGG 57.203 37.500 16.10 0.85 0.00 3.69
2204 2274 7.613801 TCTTATGTTGTGTTGTGGCCTATTATT 59.386 33.333 3.32 0.00 0.00 1.40
2276 2376 2.946329 ACTAGCTCGAGATCGACACAAT 59.054 45.455 18.75 0.00 44.22 2.71
2277 2377 4.127907 ACTAGCTCGAGATCGACACAATA 58.872 43.478 18.75 0.00 44.22 1.90
2440 2542 1.269012 CATCACCCCTGCAATTTGGT 58.731 50.000 0.00 0.00 0.00 3.67
2446 2548 1.901159 CCCCTGCAATTTGGTCATTCA 59.099 47.619 0.00 0.00 0.00 2.57
2448 2550 2.564062 CCCTGCAATTTGGTCATTCAGT 59.436 45.455 0.00 0.00 0.00 3.41
2454 2556 4.448732 GCAATTTGGTCATTCAGTTTGGAC 59.551 41.667 0.00 0.00 0.00 4.02
2455 2557 5.739935 GCAATTTGGTCATTCAGTTTGGACT 60.740 40.000 0.00 0.00 36.25 3.85
2467 2569 5.354054 CAGTTTGGACTGTTCAATCAGAG 57.646 43.478 11.42 0.00 46.57 3.35
2469 2571 5.991606 CAGTTTGGACTGTTCAATCAGAGTA 59.008 40.000 11.42 0.00 46.57 2.59
2470 2572 6.146837 CAGTTTGGACTGTTCAATCAGAGTAG 59.853 42.308 11.42 0.00 46.57 2.57
2471 2573 4.193826 TGGACTGTTCAATCAGAGTAGC 57.806 45.455 0.65 0.00 38.63 3.58
2472 2574 3.834813 TGGACTGTTCAATCAGAGTAGCT 59.165 43.478 0.00 0.00 38.63 3.32
2474 2576 5.480422 TGGACTGTTCAATCAGAGTAGCTAA 59.520 40.000 0.00 0.00 38.63 3.09
2475 2577 6.155221 TGGACTGTTCAATCAGAGTAGCTAAT 59.845 38.462 0.00 0.00 38.63 1.73
2477 2579 8.364142 GGACTGTTCAATCAGAGTAGCTAATAT 58.636 37.037 0.00 0.00 38.63 1.28
2514 2616 8.760980 TGTTAAATAACATTGAAGATAGGGGG 57.239 34.615 1.96 0.00 40.93 5.40
2515 2617 8.340757 TGTTAAATAACATTGAAGATAGGGGGT 58.659 33.333 1.96 0.00 40.93 4.95
2516 2618 8.847196 GTTAAATAACATTGAAGATAGGGGGTC 58.153 37.037 0.00 0.00 36.25 4.46
2517 2619 6.590656 AATAACATTGAAGATAGGGGGTCA 57.409 37.500 0.00 0.00 0.00 4.02
2519 2621 3.464828 ACATTGAAGATAGGGGGTCACT 58.535 45.455 0.00 0.00 0.00 3.41
2520 2622 3.852578 ACATTGAAGATAGGGGGTCACTT 59.147 43.478 0.00 0.00 0.00 3.16
2521 2623 4.292306 ACATTGAAGATAGGGGGTCACTTT 59.708 41.667 0.00 0.00 0.00 2.66
2522 2624 4.301072 TTGAAGATAGGGGGTCACTTTG 57.699 45.455 0.00 0.00 0.00 2.77
2523 2625 3.526899 TGAAGATAGGGGGTCACTTTGA 58.473 45.455 0.00 0.00 0.00 2.69
2567 2669 7.457024 TTGAATCATGGCAGTATAATCATGG 57.543 36.000 0.00 0.00 37.97 3.66
2568 2670 6.545567 TGAATCATGGCAGTATAATCATGGT 58.454 36.000 0.00 0.00 37.97 3.55
2569 2671 6.656270 TGAATCATGGCAGTATAATCATGGTC 59.344 38.462 0.00 0.00 37.97 4.02
2572 2674 3.727726 TGGCAGTATAATCATGGTCACG 58.272 45.455 0.00 0.00 0.00 4.35
2573 2675 3.133901 TGGCAGTATAATCATGGTCACGT 59.866 43.478 0.00 0.00 0.00 4.49
2574 2676 4.127171 GGCAGTATAATCATGGTCACGTT 58.873 43.478 0.00 0.00 0.00 3.99
2575 2677 5.163395 TGGCAGTATAATCATGGTCACGTTA 60.163 40.000 0.00 0.00 0.00 3.18
2576 2678 5.756347 GGCAGTATAATCATGGTCACGTTAA 59.244 40.000 0.00 0.00 0.00 2.01
2577 2679 6.292703 GGCAGTATAATCATGGTCACGTTAAC 60.293 42.308 0.00 0.00 0.00 2.01
2578 2680 6.479001 GCAGTATAATCATGGTCACGTTAACT 59.521 38.462 3.71 0.00 0.00 2.24
2579 2681 7.011109 GCAGTATAATCATGGTCACGTTAACTT 59.989 37.037 3.71 0.00 0.00 2.66
2580 2682 8.540492 CAGTATAATCATGGTCACGTTAACTTC 58.460 37.037 3.71 0.00 0.00 3.01
2581 2683 8.475639 AGTATAATCATGGTCACGTTAACTTCT 58.524 33.333 3.71 0.00 0.00 2.85
2582 2684 9.095065 GTATAATCATGGTCACGTTAACTTCTT 57.905 33.333 3.71 0.00 0.00 2.52
2583 2685 6.877611 AATCATGGTCACGTTAACTTCTTT 57.122 33.333 3.71 0.00 0.00 2.52
2584 2686 6.877611 ATCATGGTCACGTTAACTTCTTTT 57.122 33.333 3.71 0.00 0.00 2.27
2585 2687 6.687081 TCATGGTCACGTTAACTTCTTTTT 57.313 33.333 3.71 0.00 0.00 1.94
2610 2712 9.689976 TTTTGCGAGAAATTTTCAATCTATTCA 57.310 25.926 11.53 0.00 0.00 2.57
2611 2713 9.859427 TTTGCGAGAAATTTTCAATCTATTCAT 57.141 25.926 11.53 0.00 0.00 2.57
2612 2714 9.859427 TTGCGAGAAATTTTCAATCTATTCATT 57.141 25.926 11.53 0.00 0.00 2.57
2613 2715 9.507280 TGCGAGAAATTTTCAATCTATTCATTC 57.493 29.630 11.53 0.00 0.00 2.67
2614 2716 9.727627 GCGAGAAATTTTCAATCTATTCATTCT 57.272 29.630 11.53 0.00 0.00 2.40
2624 2726 8.107399 TCAATCTATTCATTCTCAATCATGGC 57.893 34.615 0.00 0.00 0.00 4.40
2625 2727 7.722285 TCAATCTATTCATTCTCAATCATGGCA 59.278 33.333 0.00 0.00 0.00 4.92
2626 2728 8.357402 CAATCTATTCATTCTCAATCATGGCAA 58.643 33.333 0.00 0.00 0.00 4.52
2627 2729 8.651589 ATCTATTCATTCTCAATCATGGCAAT 57.348 30.769 0.00 0.00 0.00 3.56
2628 2730 9.749340 ATCTATTCATTCTCAATCATGGCAATA 57.251 29.630 0.00 0.00 0.00 1.90
2629 2731 9.006839 TCTATTCATTCTCAATCATGGCAATAC 57.993 33.333 0.00 0.00 0.00 1.89
2630 2732 7.591421 ATTCATTCTCAATCATGGCAATACA 57.409 32.000 0.00 0.00 0.00 2.29
2631 2733 7.407393 TTCATTCTCAATCATGGCAATACAA 57.593 32.000 0.00 0.00 0.00 2.41
2632 2734 7.407393 TCATTCTCAATCATGGCAATACAAA 57.593 32.000 0.00 0.00 0.00 2.83
2633 2735 7.485810 TCATTCTCAATCATGGCAATACAAAG 58.514 34.615 0.00 0.00 0.00 2.77
2634 2736 7.339976 TCATTCTCAATCATGGCAATACAAAGA 59.660 33.333 0.00 0.00 0.00 2.52
2635 2737 7.465353 TTCTCAATCATGGCAATACAAAGAA 57.535 32.000 0.00 0.00 0.00 2.52
2636 2738 6.855836 TCTCAATCATGGCAATACAAAGAAC 58.144 36.000 0.00 0.00 0.00 3.01
2637 2739 6.433716 TCTCAATCATGGCAATACAAAGAACA 59.566 34.615 0.00 0.00 0.00 3.18
2638 2740 6.990798 TCAATCATGGCAATACAAAGAACAA 58.009 32.000 0.00 0.00 0.00 2.83
2639 2741 6.867816 TCAATCATGGCAATACAAAGAACAAC 59.132 34.615 0.00 0.00 0.00 3.32
2640 2742 5.781210 TCATGGCAATACAAAGAACAACA 57.219 34.783 0.00 0.00 0.00 3.33
2641 2743 5.771469 TCATGGCAATACAAAGAACAACAG 58.229 37.500 0.00 0.00 0.00 3.16
2642 2744 5.534278 TCATGGCAATACAAAGAACAACAGA 59.466 36.000 0.00 0.00 0.00 3.41
2643 2745 5.437289 TGGCAATACAAAGAACAACAGAG 57.563 39.130 0.00 0.00 0.00 3.35
2644 2746 4.278170 TGGCAATACAAAGAACAACAGAGG 59.722 41.667 0.00 0.00 0.00 3.69
2645 2747 4.278419 GGCAATACAAAGAACAACAGAGGT 59.722 41.667 0.00 0.00 0.00 3.85
2646 2748 5.472137 GGCAATACAAAGAACAACAGAGGTA 59.528 40.000 0.00 0.00 0.00 3.08
2647 2749 6.016610 GGCAATACAAAGAACAACAGAGGTAA 60.017 38.462 0.00 0.00 0.00 2.85
2648 2750 7.309194 GGCAATACAAAGAACAACAGAGGTAAT 60.309 37.037 0.00 0.00 0.00 1.89
2649 2751 8.726988 GCAATACAAAGAACAACAGAGGTAATA 58.273 33.333 0.00 0.00 0.00 0.98
2669 2771 9.498307 GGTAATAAAATTACAACAATGTCCTCG 57.502 33.333 10.92 0.00 41.05 4.63
2672 2774 9.620660 AATAAAATTACAACAATGTCCTCGAAC 57.379 29.630 0.00 0.00 41.05 3.95
2673 2775 5.622770 AATTACAACAATGTCCTCGAACC 57.377 39.130 0.00 0.00 41.05 3.62
2674 2776 2.631160 ACAACAATGTCCTCGAACCA 57.369 45.000 0.00 0.00 33.41 3.67
2675 2777 2.218603 ACAACAATGTCCTCGAACCAC 58.781 47.619 0.00 0.00 33.41 4.16
2676 2778 1.535462 CAACAATGTCCTCGAACCACC 59.465 52.381 0.00 0.00 0.00 4.61
2677 2779 1.056660 ACAATGTCCTCGAACCACCT 58.943 50.000 0.00 0.00 0.00 4.00
2678 2780 2.253610 ACAATGTCCTCGAACCACCTA 58.746 47.619 0.00 0.00 0.00 3.08
2679 2781 2.233922 ACAATGTCCTCGAACCACCTAG 59.766 50.000 0.00 0.00 0.00 3.02
2680 2782 0.824759 ATGTCCTCGAACCACCTAGC 59.175 55.000 0.00 0.00 0.00 3.42
2681 2783 1.139095 GTCCTCGAACCACCTAGCG 59.861 63.158 0.00 0.00 0.00 4.26
2682 2784 1.001764 TCCTCGAACCACCTAGCGA 60.002 57.895 0.00 0.00 0.00 4.93
2683 2785 1.139095 CCTCGAACCACCTAGCGAC 59.861 63.158 0.00 0.00 0.00 5.19
2684 2786 1.139095 CTCGAACCACCTAGCGACC 59.861 63.158 0.00 0.00 0.00 4.79
2685 2787 1.592400 CTCGAACCACCTAGCGACCA 61.592 60.000 0.00 0.00 0.00 4.02
2686 2788 0.968901 TCGAACCACCTAGCGACCAT 60.969 55.000 0.00 0.00 0.00 3.55
2687 2789 0.742505 CGAACCACCTAGCGACCATA 59.257 55.000 0.00 0.00 0.00 2.74
2688 2790 1.135527 CGAACCACCTAGCGACCATAA 59.864 52.381 0.00 0.00 0.00 1.90
2689 2791 2.547826 GAACCACCTAGCGACCATAAC 58.452 52.381 0.00 0.00 0.00 1.89
2690 2792 0.828677 ACCACCTAGCGACCATAACC 59.171 55.000 0.00 0.00 0.00 2.85
2691 2793 0.828022 CCACCTAGCGACCATAACCA 59.172 55.000 0.00 0.00 0.00 3.67
2692 2794 1.416401 CCACCTAGCGACCATAACCAT 59.584 52.381 0.00 0.00 0.00 3.55
2693 2795 2.483876 CACCTAGCGACCATAACCATG 58.516 52.381 0.00 0.00 0.00 3.66
2694 2796 2.116238 ACCTAGCGACCATAACCATGT 58.884 47.619 0.00 0.00 0.00 3.21
2695 2797 2.102588 ACCTAGCGACCATAACCATGTC 59.897 50.000 0.00 0.00 0.00 3.06
2696 2798 2.394708 CTAGCGACCATAACCATGTCG 58.605 52.381 6.89 6.89 38.05 4.35
2697 2799 0.821517 AGCGACCATAACCATGTCGA 59.178 50.000 14.62 0.00 37.63 4.20
2698 2800 1.412710 AGCGACCATAACCATGTCGAT 59.587 47.619 14.62 5.85 37.63 3.59
2699 2801 1.792949 GCGACCATAACCATGTCGATC 59.207 52.381 14.62 0.00 37.63 3.69
2700 2802 2.801699 GCGACCATAACCATGTCGATCA 60.802 50.000 14.62 0.00 37.63 2.92
2701 2803 3.653344 CGACCATAACCATGTCGATCAT 58.347 45.455 5.41 0.00 37.63 2.45
2702 2804 3.675225 CGACCATAACCATGTCGATCATC 59.325 47.826 5.41 0.00 37.63 2.92
2703 2805 4.631131 GACCATAACCATGTCGATCATCA 58.369 43.478 0.00 0.00 34.09 3.07
2704 2806 5.233083 ACCATAACCATGTCGATCATCAT 57.767 39.130 0.00 0.00 34.09 2.45
2705 2807 5.624159 ACCATAACCATGTCGATCATCATT 58.376 37.500 0.00 0.00 34.09 2.57
2706 2808 5.471116 ACCATAACCATGTCGATCATCATTG 59.529 40.000 0.00 0.00 34.09 2.82
2707 2809 5.702209 CCATAACCATGTCGATCATCATTGA 59.298 40.000 0.00 0.00 34.09 2.57
2708 2810 6.347969 CCATAACCATGTCGATCATCATTGAC 60.348 42.308 0.00 0.00 42.13 3.18
2709 2811 4.412796 ACCATGTCGATCATCATTGACT 57.587 40.909 0.00 0.00 42.24 3.41
2710 2812 4.774124 ACCATGTCGATCATCATTGACTT 58.226 39.130 0.00 0.00 42.24 3.01
2711 2813 5.188434 ACCATGTCGATCATCATTGACTTT 58.812 37.500 0.00 0.00 42.24 2.66
2712 2814 6.348498 ACCATGTCGATCATCATTGACTTTA 58.652 36.000 0.00 0.00 42.24 1.85
2713 2815 6.823182 ACCATGTCGATCATCATTGACTTTAA 59.177 34.615 0.00 0.00 42.24 1.52
2714 2816 7.500227 ACCATGTCGATCATCATTGACTTTAAT 59.500 33.333 0.00 0.00 42.24 1.40
2715 2817 8.992073 CCATGTCGATCATCATTGACTTTAATA 58.008 33.333 0.00 0.00 42.24 0.98
2756 2858 9.349713 AGTAACAAAATTTTAGATCCACTCACA 57.650 29.630 2.44 0.00 0.00 3.58
2757 2859 9.394477 GTAACAAAATTTTAGATCCACTCACAC 57.606 33.333 2.44 0.00 0.00 3.82
2758 2860 6.981722 ACAAAATTTTAGATCCACTCACACC 58.018 36.000 2.44 0.00 0.00 4.16
2759 2861 6.549364 ACAAAATTTTAGATCCACTCACACCA 59.451 34.615 2.44 0.00 0.00 4.17
2760 2862 7.233348 ACAAAATTTTAGATCCACTCACACCAT 59.767 33.333 2.44 0.00 0.00 3.55
2761 2863 7.781324 AAATTTTAGATCCACTCACACCATT 57.219 32.000 0.00 0.00 0.00 3.16
2762 2864 7.396540 AATTTTAGATCCACTCACACCATTC 57.603 36.000 0.00 0.00 0.00 2.67
2763 2865 5.497464 TTTAGATCCACTCACACCATTCA 57.503 39.130 0.00 0.00 0.00 2.57
2764 2866 3.340814 AGATCCACTCACACCATTCAC 57.659 47.619 0.00 0.00 0.00 3.18
2765 2867 2.002586 GATCCACTCACACCATTCACG 58.997 52.381 0.00 0.00 0.00 4.35
2766 2868 0.034756 TCCACTCACACCATTCACGG 59.965 55.000 0.00 0.00 0.00 4.94
2767 2869 0.955428 CCACTCACACCATTCACGGG 60.955 60.000 0.00 0.00 0.00 5.28
2768 2870 0.034756 CACTCACACCATTCACGGGA 59.965 55.000 0.00 0.00 0.00 5.14
2769 2871 0.321671 ACTCACACCATTCACGGGAG 59.678 55.000 0.00 0.00 0.00 4.30
2770 2872 0.608130 CTCACACCATTCACGGGAGA 59.392 55.000 0.00 0.00 0.00 3.71
2771 2873 1.001974 CTCACACCATTCACGGGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
2772 2874 1.418264 TCACACCATTCACGGGAGAAA 59.582 47.619 0.00 0.00 0.00 2.52
2773 2875 2.039746 TCACACCATTCACGGGAGAAAT 59.960 45.455 0.00 0.00 0.00 2.17
2774 2876 2.162208 CACACCATTCACGGGAGAAATG 59.838 50.000 0.00 0.00 36.78 2.32
2775 2877 2.224769 ACACCATTCACGGGAGAAATGT 60.225 45.455 0.00 0.00 35.95 2.71
2776 2878 2.819608 CACCATTCACGGGAGAAATGTT 59.180 45.455 0.00 0.00 35.95 2.71
2777 2879 2.819608 ACCATTCACGGGAGAAATGTTG 59.180 45.455 0.00 0.00 35.95 3.33
2778 2880 3.081061 CCATTCACGGGAGAAATGTTGA 58.919 45.455 0.00 0.00 35.95 3.18
2779 2881 3.119849 CCATTCACGGGAGAAATGTTGAC 60.120 47.826 0.00 0.00 35.95 3.18
2780 2882 2.178912 TCACGGGAGAAATGTTGACC 57.821 50.000 0.00 0.00 0.00 4.02
2781 2883 1.418264 TCACGGGAGAAATGTTGACCA 59.582 47.619 0.00 0.00 0.00 4.02
2782 2884 2.039746 TCACGGGAGAAATGTTGACCAT 59.960 45.455 0.00 0.00 34.36 3.55
2783 2885 2.819608 CACGGGAGAAATGTTGACCATT 59.180 45.455 0.00 0.00 45.81 3.16
2784 2886 2.819608 ACGGGAGAAATGTTGACCATTG 59.180 45.455 0.00 0.00 43.04 2.82
2785 2887 3.081061 CGGGAGAAATGTTGACCATTGA 58.919 45.455 0.00 0.00 43.04 2.57
2786 2888 3.119849 CGGGAGAAATGTTGACCATTGAC 60.120 47.826 0.00 0.00 43.04 3.18
2787 2889 3.193479 GGGAGAAATGTTGACCATTGACC 59.807 47.826 0.00 0.00 43.04 4.02
2788 2890 3.826157 GGAGAAATGTTGACCATTGACCA 59.174 43.478 0.00 0.00 43.04 4.02
2789 2891 4.463891 GGAGAAATGTTGACCATTGACCAT 59.536 41.667 0.00 0.00 43.04 3.55
2790 2892 5.047092 GGAGAAATGTTGACCATTGACCATT 60.047 40.000 0.00 0.00 43.04 3.16
2791 2893 6.423776 AGAAATGTTGACCATTGACCATTT 57.576 33.333 0.00 0.00 43.04 2.32
2792 2894 6.225318 AGAAATGTTGACCATTGACCATTTG 58.775 36.000 0.00 0.00 43.04 2.32
2793 2895 5.804944 AATGTTGACCATTGACCATTTGA 57.195 34.783 0.00 0.00 42.24 2.69
2794 2896 5.804944 ATGTTGACCATTGACCATTTGAA 57.195 34.783 0.00 0.00 0.00 2.69
2795 2897 5.804944 TGTTGACCATTGACCATTTGAAT 57.195 34.783 0.00 0.00 0.00 2.57
2796 2898 6.172136 TGTTGACCATTGACCATTTGAATT 57.828 33.333 0.00 0.00 0.00 2.17
2797 2899 6.590068 TGTTGACCATTGACCATTTGAATTT 58.410 32.000 0.00 0.00 0.00 1.82
2798 2900 7.730084 TGTTGACCATTGACCATTTGAATTTA 58.270 30.769 0.00 0.00 0.00 1.40
2799 2901 8.373981 TGTTGACCATTGACCATTTGAATTTAT 58.626 29.630 0.00 0.00 0.00 1.40
2800 2902 9.218440 GTTGACCATTGACCATTTGAATTTATT 57.782 29.630 0.00 0.00 0.00 1.40
2801 2903 8.774890 TGACCATTGACCATTTGAATTTATTG 57.225 30.769 0.00 0.00 0.00 1.90
2802 2904 7.333921 TGACCATTGACCATTTGAATTTATTGC 59.666 33.333 0.00 0.00 0.00 3.56
2803 2905 7.396418 ACCATTGACCATTTGAATTTATTGCT 58.604 30.769 0.00 0.00 0.00 3.91
2804 2906 7.884354 ACCATTGACCATTTGAATTTATTGCTT 59.116 29.630 0.00 0.00 0.00 3.91
2805 2907 8.392612 CCATTGACCATTTGAATTTATTGCTTC 58.607 33.333 0.00 0.00 0.00 3.86
2806 2908 7.903995 TTGACCATTTGAATTTATTGCTTCC 57.096 32.000 0.00 0.00 0.00 3.46
2807 2909 6.405538 TGACCATTTGAATTTATTGCTTCCC 58.594 36.000 0.00 0.00 0.00 3.97
2808 2910 5.744171 ACCATTTGAATTTATTGCTTCCCC 58.256 37.500 0.00 0.00 0.00 4.81
2809 2911 5.250313 ACCATTTGAATTTATTGCTTCCCCA 59.750 36.000 0.00 0.00 0.00 4.96
2810 2912 6.179040 CCATTTGAATTTATTGCTTCCCCAA 58.821 36.000 0.00 0.00 0.00 4.12
2811 2913 6.658391 CCATTTGAATTTATTGCTTCCCCAAA 59.342 34.615 0.00 0.00 0.00 3.28
2812 2914 7.339976 CCATTTGAATTTATTGCTTCCCCAAAT 59.660 33.333 0.00 0.00 33.58 2.32
2813 2915 7.684937 TTTGAATTTATTGCTTCCCCAAATG 57.315 32.000 0.00 0.00 0.00 2.32
2814 2916 5.184711 TGAATTTATTGCTTCCCCAAATGC 58.815 37.500 0.00 0.00 0.00 3.56
2815 2917 5.045724 TGAATTTATTGCTTCCCCAAATGCT 60.046 36.000 0.00 0.00 0.00 3.79
2816 2918 4.906747 TTTATTGCTTCCCCAAATGCTT 57.093 36.364 0.00 0.00 0.00 3.91
2817 2919 4.470334 TTATTGCTTCCCCAAATGCTTC 57.530 40.909 0.00 0.00 0.00 3.86
2818 2920 0.975887 TTGCTTCCCCAAATGCTTCC 59.024 50.000 0.00 0.00 0.00 3.46
2819 2921 1.250154 TGCTTCCCCAAATGCTTCCG 61.250 55.000 0.00 0.00 0.00 4.30
2820 2922 1.512694 CTTCCCCAAATGCTTCCGC 59.487 57.895 0.00 0.00 0.00 5.54
2831 2933 1.803334 TGCTTCCGCAAAATACTCGT 58.197 45.000 0.00 0.00 44.62 4.18
2832 2934 2.962125 TGCTTCCGCAAAATACTCGTA 58.038 42.857 0.00 0.00 44.62 3.43
2833 2935 2.927477 TGCTTCCGCAAAATACTCGTAG 59.073 45.455 0.00 0.00 44.62 3.51
2834 2936 2.928116 GCTTCCGCAAAATACTCGTAGT 59.072 45.455 0.00 0.00 35.78 2.73
2835 2937 4.107622 GCTTCCGCAAAATACTCGTAGTA 58.892 43.478 0.00 0.00 33.75 1.82
2836 2938 4.027050 GCTTCCGCAAAATACTCGTAGTAC 60.027 45.833 0.00 0.00 32.71 2.73
2837 2939 4.970662 TCCGCAAAATACTCGTAGTACT 57.029 40.909 0.00 0.00 32.84 2.73
2838 2940 6.435430 TTCCGCAAAATACTCGTAGTACTA 57.565 37.500 0.00 0.00 32.84 1.82
2839 2941 6.435430 TCCGCAAAATACTCGTAGTACTAA 57.565 37.500 3.61 0.00 32.84 2.24
2859 2961 5.770162 ACTAAATATTTGGCTATGGTGGAGC 59.230 40.000 11.05 0.00 39.33 4.70
3207 3349 2.457323 GGGCCACCCATTCCCGATA 61.457 63.158 4.39 0.00 44.65 2.92
3288 3434 0.980231 GATCCAGCACCAGAGGACCT 60.980 60.000 0.00 0.00 33.57 3.85
3510 3659 2.997897 GAGGTGAGCTCGGGTGGT 60.998 66.667 9.64 0.00 0.00 4.16
3663 3833 3.966543 GCCCCCATATCCACCCCG 61.967 72.222 0.00 0.00 0.00 5.73
3706 3889 2.954611 GGTCAGCCCAAGCGTTTC 59.045 61.111 0.00 0.00 46.67 2.78
3798 3991 5.652891 GGGTCCGATTATAGATGCTCTTAGA 59.347 44.000 0.00 0.00 0.00 2.10
3799 3992 6.183360 GGGTCCGATTATAGATGCTCTTAGAG 60.183 46.154 4.63 4.63 0.00 2.43
3800 3993 6.600032 GGTCCGATTATAGATGCTCTTAGAGA 59.400 42.308 14.14 0.00 0.00 3.10
3803 3996 7.335673 TCCGATTATAGATGCTCTTAGAGACTG 59.664 40.741 14.14 0.00 0.00 3.51
3805 3998 8.175069 CGATTATAGATGCTCTTAGAGACTGTC 58.825 40.741 14.14 0.00 0.00 3.51
3809 4002 2.876581 TGCTCTTAGAGACTGTCCACA 58.123 47.619 14.14 0.00 0.00 4.17
3822 4015 6.169094 AGACTGTCCACAAACTCTCATATTG 58.831 40.000 3.76 0.00 0.00 1.90
3823 4016 6.014242 AGACTGTCCACAAACTCTCATATTGA 60.014 38.462 3.76 0.00 0.00 2.57
3877 4072 2.024305 CGCTAGTCCGCCACGTAG 59.976 66.667 0.00 0.00 0.00 3.51
3891 4086 2.367202 CGTAGGACATGGCCCACCT 61.367 63.158 16.13 8.31 36.63 4.00
3895 4090 1.076549 GGACATGGCCCACCTTGAA 59.923 57.895 6.20 0.00 42.44 2.69
3897 4092 1.228862 ACATGGCCCACCTTGAACC 60.229 57.895 0.00 0.00 42.44 3.62
3898 4093 1.228831 CATGGCCCACCTTGAACCA 60.229 57.895 0.00 0.00 42.44 3.67
3899 4094 1.228862 ATGGCCCACCTTGAACCAC 60.229 57.895 0.00 0.00 36.63 4.16
3900 4095 2.017668 ATGGCCCACCTTGAACCACA 62.018 55.000 0.00 0.00 36.63 4.17
4012 5557 5.905331 ACATCCAGATTCATAGACCACCTAA 59.095 40.000 0.00 0.00 0.00 2.69
4039 5584 2.135139 CTACAAACACTGAAGCGAGCA 58.865 47.619 0.00 0.00 0.00 4.26
4067 5612 1.680338 GCCGCCATTATCACTCCTTT 58.320 50.000 0.00 0.00 0.00 3.11
4072 5617 3.806521 CGCCATTATCACTCCTTTCTCAG 59.193 47.826 0.00 0.00 0.00 3.35
4121 5666 1.002250 CAGTCGGAAAGTCGTCGTGG 61.002 60.000 0.00 0.00 0.00 4.94
4144 5690 2.034066 CCCCACAGACCAACGCAT 59.966 61.111 0.00 0.00 0.00 4.73
4157 5703 2.033299 CCAACGCATCAGAACAACAACT 59.967 45.455 0.00 0.00 0.00 3.16
4158 5704 3.249799 CCAACGCATCAGAACAACAACTA 59.750 43.478 0.00 0.00 0.00 2.24
4188 5753 2.573462 TCAGAAGGATCCAACCTGAAGG 59.427 50.000 21.14 0.00 40.49 3.46
4206 7108 1.137513 GGCACACTGACGTAGACAAC 58.862 55.000 0.00 0.00 0.00 3.32
4248 7151 4.098914 TCCACTAAAGACAAGCACCAAT 57.901 40.909 0.00 0.00 0.00 3.16
4317 8558 0.822164 ATACTAGACACACCACCGGC 59.178 55.000 0.00 0.00 0.00 6.13
4341 8592 2.159085 AGGCGAAGAGAACCTTATTCCG 60.159 50.000 0.00 0.00 34.68 4.30
4489 10088 0.832135 AAGGCCACAGAAGACGAGGA 60.832 55.000 5.01 0.00 0.00 3.71
4520 10119 4.760047 CGCAGAGGGGGTCAACCG 62.760 72.222 0.00 0.00 41.60 4.44
4521 10120 3.637273 GCAGAGGGGGTCAACCGT 61.637 66.667 0.00 0.00 41.60 4.83
4522 10121 3.157680 CAGAGGGGGTCAACCGTT 58.842 61.111 0.00 0.00 41.60 4.44
4524 10123 1.152096 AGAGGGGGTCAACCGTTCT 60.152 57.895 0.00 0.00 41.60 3.01
4525 10124 1.192803 AGAGGGGGTCAACCGTTCTC 61.193 60.000 6.84 6.84 41.60 2.87
4526 10125 1.152096 AGGGGGTCAACCGTTCTCT 60.152 57.895 0.00 0.00 41.60 3.10
4527 10126 0.767060 AGGGGGTCAACCGTTCTCTT 60.767 55.000 0.00 0.00 41.60 2.85
4528 10127 0.605589 GGGGGTCAACCGTTCTCTTG 60.606 60.000 0.00 0.00 41.60 3.02
4529 10128 0.605589 GGGGTCAACCGTTCTCTTGG 60.606 60.000 0.00 0.00 41.60 3.61
4530 10129 1.235281 GGGTCAACCGTTCTCTTGGC 61.235 60.000 0.00 0.00 36.71 4.52
4531 10130 0.250338 GGTCAACCGTTCTCTTGGCT 60.250 55.000 0.00 0.00 0.00 4.75
4532 10131 1.594331 GTCAACCGTTCTCTTGGCTT 58.406 50.000 0.00 0.00 0.00 4.35
4533 10132 1.264288 GTCAACCGTTCTCTTGGCTTG 59.736 52.381 0.00 0.00 0.00 4.01
4534 10133 0.593128 CAACCGTTCTCTTGGCTTGG 59.407 55.000 0.00 0.00 0.00 3.61
4535 10134 0.472471 AACCGTTCTCTTGGCTTGGA 59.528 50.000 0.00 0.00 0.00 3.53
4536 10135 0.250338 ACCGTTCTCTTGGCTTGGAC 60.250 55.000 0.00 0.00 0.00 4.02
4538 10137 1.593196 CGTTCTCTTGGCTTGGACAA 58.407 50.000 0.00 0.00 0.00 3.18
4543 10142 4.063529 TTGGCTTGGACAAGAGCG 57.936 55.556 15.76 0.00 40.79 5.03
4544 10143 1.449782 TTGGCTTGGACAAGAGCGA 59.550 52.632 15.76 0.00 40.79 4.93
4546 10145 1.743252 GGCTTGGACAAGAGCGAGG 60.743 63.158 15.76 0.00 40.79 4.63
4552 10155 0.321996 GGACAAGAGCGAGGAGGTTT 59.678 55.000 0.00 0.00 0.00 3.27
4565 10168 4.503296 CGAGGAGGTTTCTTTCTTCCTTCA 60.503 45.833 0.00 0.00 40.62 3.02
4578 10181 4.005650 TCTTCCTTCACATGCAAGTGATC 58.994 43.478 24.00 0.00 46.90 2.92
4593 10212 8.837788 TGCAAGTGATCAGAAATATAGTATGG 57.162 34.615 0.00 0.00 0.00 2.74
4616 10235 7.335627 TGGCTATATGAACGAATAAATAGGGG 58.664 38.462 0.00 0.00 0.00 4.79
4630 10249 0.323629 TAGGGGCTCAAAACGGACAG 59.676 55.000 0.00 0.00 0.00 3.51
4632 10251 1.235281 GGGGCTCAAAACGGACAGTC 61.235 60.000 0.00 0.00 0.00 3.51
4639 10258 1.004292 CAAAACGGACAGTCAACGGAC 60.004 52.381 2.17 0.00 44.66 4.79
4656 10275 2.880879 CGCATCCGTGGACGTCTG 60.881 66.667 16.46 5.66 37.74 3.51
4661 10280 2.494777 ATCCGTGGACGTCTGGGAGA 62.495 60.000 16.46 6.89 37.74 3.71
4663 10282 2.991076 CGTGGACGTCTGGGAGACC 61.991 68.421 16.46 0.00 42.12 3.85
4676 10295 0.529378 GGAGACCGGATTACGTGTGT 59.471 55.000 9.46 0.00 42.24 3.72
4697 10316 0.721718 GATGCTCTTACACACCACGC 59.278 55.000 0.00 0.00 0.00 5.34
4716 10335 1.618861 CAGCGAATACGATCGATCCC 58.381 55.000 24.34 9.21 45.48 3.85
4719 10338 1.068472 GCGAATACGATCGATCCCAGT 60.068 52.381 24.34 13.74 45.48 4.00
4763 10384 4.293415 GTGATCCATACGTTTACCTACCG 58.707 47.826 0.00 0.00 0.00 4.02
4774 10395 1.671979 TACCTACCGACGAGTCCATG 58.328 55.000 0.00 0.00 0.00 3.66
4785 10406 0.108424 GAGTCCATGCGAGCTCAGTT 60.108 55.000 15.40 0.00 0.00 3.16
4790 10411 3.001736 GTCCATGCGAGCTCAGTTAATTC 59.998 47.826 15.40 0.00 0.00 2.17
4852 10475 0.872881 ACACCAGTTACGTGCGTGTC 60.873 55.000 7.55 0.75 32.34 3.67
4858 10481 1.334556 AGTTACGTGCGTGTCAGTGTA 59.665 47.619 7.55 0.00 0.00 2.90
4859 10482 1.712350 GTTACGTGCGTGTCAGTGTAG 59.288 52.381 7.55 0.00 0.00 2.74
4962 10585 3.916392 GACGCAGGACCCAGTGACG 62.916 68.421 0.00 0.00 0.00 4.35
5014 10637 1.367840 GTCCTTATGATCGCCGCCT 59.632 57.895 0.00 0.00 0.00 5.52
5744 11376 2.109126 GGAAGATGCGTGGTGGAGC 61.109 63.158 0.00 0.00 0.00 4.70
5772 11404 0.894184 AGACGCCGGAGAAGAAGACA 60.894 55.000 13.83 0.00 0.00 3.41
5967 11602 2.654749 TCTTCTCGATCATGCACGTT 57.345 45.000 10.15 0.00 0.00 3.99
5970 11605 0.530288 TCTCGATCATGCACGTTGGA 59.470 50.000 10.15 0.00 0.00 3.53
5971 11606 1.136891 TCTCGATCATGCACGTTGGAT 59.863 47.619 10.15 0.00 0.00 3.41
5973 11608 0.305617 CGATCATGCACGTTGGATGG 59.694 55.000 15.47 2.70 44.85 3.51
5974 11609 1.667236 GATCATGCACGTTGGATGGA 58.333 50.000 15.47 6.78 44.85 3.41
5975 11610 2.224606 GATCATGCACGTTGGATGGAT 58.775 47.619 15.47 9.92 44.85 3.41
5981 11620 1.745087 GCACGTTGGATGGATTGATGT 59.255 47.619 0.00 0.00 0.00 3.06
5998 11637 3.376078 TAGGACGTGGTGACCGCC 61.376 66.667 9.96 2.01 37.49 6.13
6349 11991 3.322466 CCACTGGAGTTCCGGCCT 61.322 66.667 0.00 0.00 46.43 5.19
6634 12282 3.122250 CTTCCCGGCGGTCGTCTAG 62.122 68.421 26.32 7.53 37.11 2.43
6748 12400 2.960384 TCAAGAGTGGTCGTTTCCTACA 59.040 45.455 0.00 0.00 0.00 2.74
6752 12404 4.147321 AGAGTGGTCGTTTCCTACAACTA 58.853 43.478 0.00 0.00 0.00 2.24
6819 12471 6.489022 AGGTGGTTCATAGGTTGTAACTTTTC 59.511 38.462 0.00 0.00 0.00 2.29
6943 12613 5.584551 AACCTTCCTAACCAACTCTTCAT 57.415 39.130 0.00 0.00 0.00 2.57
6959 12629 2.368329 ATACTGGTGGGCCCCCTC 60.368 66.667 22.27 9.91 36.94 4.30
6988 12658 6.068853 TCCCTATCTCCAATCAAAATTGTCCT 60.069 38.462 0.00 0.00 40.63 3.85
7023 12696 6.701432 ACTAAAACACGTAGCTGATTGTAC 57.299 37.500 0.00 0.00 0.00 2.90
7030 12703 4.801147 CGTAGCTGATTGTACGTAGGTA 57.199 45.455 0.00 0.00 37.77 3.08
7046 12735 2.422746 AGGTATAGCATTGCCTCCCTT 58.577 47.619 4.70 0.00 0.00 3.95
7054 12743 0.259938 ATTGCCTCCCTTCATCCCAC 59.740 55.000 0.00 0.00 0.00 4.61
7065 12754 5.833131 TCCCTTCATCCCACAATATAAAAGC 59.167 40.000 0.00 0.00 0.00 3.51
7154 12843 7.946655 TTTGGCATAGTCGATGTTATTAGAG 57.053 36.000 0.00 0.00 37.90 2.43
7155 12844 5.470368 TGGCATAGTCGATGTTATTAGAGC 58.530 41.667 0.00 0.00 37.90 4.09
7156 12845 5.010617 TGGCATAGTCGATGTTATTAGAGCA 59.989 40.000 0.00 0.00 37.90 4.26
7157 12846 6.102663 GGCATAGTCGATGTTATTAGAGCAT 58.897 40.000 0.00 0.00 37.90 3.79
7158 12847 6.254589 GGCATAGTCGATGTTATTAGAGCATC 59.745 42.308 0.00 0.00 37.90 3.91
7159 12848 7.032580 GCATAGTCGATGTTATTAGAGCATCT 58.967 38.462 2.57 0.00 43.06 2.90
7160 12849 7.219917 GCATAGTCGATGTTATTAGAGCATCTC 59.780 40.741 2.57 0.00 40.83 2.75
7173 12862 2.734079 GAGCATCTCTAATAGCAACCGC 59.266 50.000 0.00 0.00 38.99 5.68
7174 12863 1.801178 GCATCTCTAATAGCAACCGCC 59.199 52.381 0.00 0.00 39.83 6.13
7175 12864 2.806745 GCATCTCTAATAGCAACCGCCA 60.807 50.000 0.00 0.00 39.83 5.69
7176 12865 3.466836 CATCTCTAATAGCAACCGCCAA 58.533 45.455 0.00 0.00 39.83 4.52
7177 12866 3.620427 TCTCTAATAGCAACCGCCAAA 57.380 42.857 0.00 0.00 39.83 3.28
7178 12867 3.945346 TCTCTAATAGCAACCGCCAAAA 58.055 40.909 0.00 0.00 39.83 2.44
7179 12868 4.328536 TCTCTAATAGCAACCGCCAAAAA 58.671 39.130 0.00 0.00 39.83 1.94
7304 12995 5.623673 GTGATGTTGAATGTTTGTACGTTCC 59.376 40.000 0.00 0.00 45.61 3.62
7318 13009 5.845103 TGTACGTTCCATTGTAGTCTTGAA 58.155 37.500 0.00 0.00 0.00 2.69
7369 13060 1.739707 GCAAATGATGATTTGGCGGCA 60.740 47.619 17.67 7.97 45.96 5.69
7370 13061 2.619147 CAAATGATGATTTGGCGGCAA 58.381 42.857 21.79 21.79 43.30 4.52
7371 13062 2.298411 AATGATGATTTGGCGGCAAC 57.702 45.000 25.48 14.56 0.00 4.17
7372 13063 1.184431 ATGATGATTTGGCGGCAACA 58.816 45.000 25.48 19.97 0.00 3.33
7373 13064 0.243365 TGATGATTTGGCGGCAACAC 59.757 50.000 25.48 20.09 0.00 3.32
7374 13065 0.798009 GATGATTTGGCGGCAACACG 60.798 55.000 25.48 0.00 0.00 4.49
7375 13066 1.240641 ATGATTTGGCGGCAACACGA 61.241 50.000 25.48 10.35 35.47 4.35
7377 13068 0.798009 GATTTGGCGGCAACACGATG 60.798 55.000 25.48 0.00 35.47 3.84
7378 13069 2.211619 ATTTGGCGGCAACACGATGG 62.212 55.000 25.48 0.00 35.47 3.51
7406 14371 2.672996 AGGCAACATGACCGGCAC 60.673 61.111 0.00 0.00 41.41 5.01
7460 14425 2.264480 CGGAGGCAACATGACCGA 59.736 61.111 0.00 0.00 45.31 4.69
7463 14428 0.392998 GGAGGCAACATGACCGACAT 60.393 55.000 0.00 0.00 40.17 3.06
7473 14438 3.009115 ACCGACATGGGAGGTGGG 61.009 66.667 8.00 0.00 44.64 4.61
7478 14443 0.611896 GACATGGGAGGTGGGTTTGG 60.612 60.000 0.00 0.00 0.00 3.28
7532 14500 1.260544 GGAGGCAATGAAGGTGCTTT 58.739 50.000 0.00 0.00 41.88 3.51
7538 14506 1.879380 CAATGAAGGTGCTTTCGGTCA 59.121 47.619 0.00 0.00 0.00 4.02
7547 14515 0.458543 GCTTTCGGTCATGCTCTCGA 60.459 55.000 0.00 0.00 0.00 4.04
7567 14535 2.334838 ACAACGATACTTCACCGCTTC 58.665 47.619 0.00 0.00 0.00 3.86
7570 14538 1.544691 ACGATACTTCACCGCTTCACT 59.455 47.619 0.00 0.00 0.00 3.41
7586 14554 2.658285 TCACTACGTCGACAAAGAAGC 58.342 47.619 17.16 0.00 0.00 3.86
7589 14557 0.592637 TACGTCGACAAAGAAGCCGA 59.407 50.000 17.16 0.00 0.00 5.54
7603 14571 4.907809 AGAAGCCGATGATGATGATGATT 58.092 39.130 0.00 0.00 0.00 2.57
7610 14578 5.878669 CCGATGATGATGATGATTGTACCAT 59.121 40.000 0.00 0.00 0.00 3.55
7626 14594 1.963855 CATGGTTCACAACGCCGGA 60.964 57.895 5.05 0.00 0.00 5.14
7679 14647 6.943146 TCATGTGTATTTTAGTTTGTAGGCCA 59.057 34.615 5.01 0.00 0.00 5.36
7714 14682 3.153919 GGGACATTGCACTTTTGGTAGA 58.846 45.455 0.00 0.00 0.00 2.59
7750 14718 8.913487 ACTATGATGATGATGATGCACTTTTA 57.087 30.769 0.00 0.00 0.00 1.52
7815 14783 7.993821 TTTGAAGTGATATTTGAACGCAAAA 57.006 28.000 0.00 0.00 46.19 2.44
7817 14785 5.918011 TGAAGTGATATTTGAACGCAAAACC 59.082 36.000 0.00 0.00 46.19 3.27
7818 14786 4.472286 AGTGATATTTGAACGCAAAACCG 58.528 39.130 0.00 0.00 46.19 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.589461 ACTTCTTAGCTAGCCATAACTAAGATA 57.411 33.333 17.61 10.68 42.27 1.98
37 38 8.364142 CACTTCTTAGCTAGCCATAACTAAGAT 58.636 37.037 17.61 6.23 42.27 2.40
52 56 4.219725 GTGGACTTCTCTCACTTCTTAGCT 59.780 45.833 0.00 0.00 0.00 3.32
68 72 4.079385 AGTTTAAAGGGGTGAAGTGGACTT 60.079 41.667 0.00 0.00 39.23 3.01
78 82 4.765339 CCTTAGGACAAGTTTAAAGGGGTG 59.235 45.833 0.00 0.00 31.76 4.61
80 84 4.994282 ACCTTAGGACAAGTTTAAAGGGG 58.006 43.478 4.77 0.00 38.22 4.79
112 116 6.288941 TGAACCAAATCATAGTTCGAGGTA 57.711 37.500 0.00 0.00 42.22 3.08
117 121 9.061610 GTGTATTTTGAACCAAATCATAGTTCG 57.938 33.333 0.00 0.00 42.22 3.95
118 122 9.353999 GGTGTATTTTGAACCAAATCATAGTTC 57.646 33.333 0.00 0.00 40.23 3.01
161 165 2.678336 GAGAAGGGGTGTATTTTGAGCG 59.322 50.000 0.00 0.00 0.00 5.03
162 166 3.956744 AGAGAAGGGGTGTATTTTGAGC 58.043 45.455 0.00 0.00 0.00 4.26
163 167 6.712276 ACTTAGAGAAGGGGTGTATTTTGAG 58.288 40.000 0.00 0.00 36.95 3.02
181 185 4.885325 GGACAAAACAAGGGTCAACTTAGA 59.115 41.667 0.00 0.00 33.26 2.10
184 188 3.447229 CAGGACAAAACAAGGGTCAACTT 59.553 43.478 0.00 0.00 33.26 2.66
189 193 0.673985 GGCAGGACAAAACAAGGGTC 59.326 55.000 0.00 0.00 0.00 4.46
194 198 2.100584 GTGACATGGCAGGACAAAACAA 59.899 45.455 0.00 0.00 0.00 2.83
195 199 1.680735 GTGACATGGCAGGACAAAACA 59.319 47.619 0.00 0.00 0.00 2.83
196 200 1.000274 GGTGACATGGCAGGACAAAAC 60.000 52.381 0.00 0.00 0.00 2.43
202 206 0.327924 AAATCGGTGACATGGCAGGA 59.672 50.000 0.00 2.37 0.00 3.86
218 222 3.172339 AGTGTGCAGAGAGAGGAGAAAT 58.828 45.455 0.00 0.00 0.00 2.17
239 243 2.449031 ATTGCTGACTTGGCGGACGA 62.449 55.000 0.00 0.00 0.00 4.20
240 244 1.970917 GATTGCTGACTTGGCGGACG 61.971 60.000 0.00 0.00 0.00 4.79
256 260 7.826744 GGAGGAGAAAGAATAACTCACAAGATT 59.173 37.037 0.00 0.00 33.00 2.40
282 286 1.612395 AAGGAGAGAGCCAAGCGAGG 61.612 60.000 0.00 0.00 0.00 4.63
287 291 4.284829 AGAGAAAAAGGAGAGAGCCAAG 57.715 45.455 0.00 0.00 0.00 3.61
303 307 3.586470 CCTCTCAGGCTACCTAGAGAA 57.414 52.381 15.73 4.68 37.36 2.87
330 334 2.186826 GGCAACAACGACAGGCAGT 61.187 57.895 0.00 0.00 0.00 4.40
332 336 2.186160 CAGGCAACAACGACAGGCA 61.186 57.895 0.00 0.00 41.41 4.75
333 337 2.639286 CAGGCAACAACGACAGGC 59.361 61.111 0.00 0.00 41.41 4.85
334 338 1.893808 AGCAGGCAACAACGACAGG 60.894 57.895 0.00 0.00 41.41 4.00
335 339 1.280746 CAGCAGGCAACAACGACAG 59.719 57.895 0.00 0.00 41.41 3.51
336 340 2.186160 CCAGCAGGCAACAACGACA 61.186 57.895 0.00 0.00 41.41 4.35
337 341 2.639286 CCAGCAGGCAACAACGAC 59.361 61.111 0.00 0.00 41.41 4.34
338 342 2.594303 CCCAGCAGGCAACAACGA 60.594 61.111 0.00 0.00 41.41 3.85
351 355 2.680370 GGGTTGAGGTAGGGCCCAG 61.680 68.421 27.56 0.00 39.13 4.45
352 356 2.612746 GGGTTGAGGTAGGGCCCA 60.613 66.667 27.56 7.27 39.13 5.36
365 369 0.551131 AGATGAAGGGAGGCTGGGTT 60.551 55.000 0.00 0.00 0.00 4.11
375 379 3.118592 GGTGAGTTGTAGGAGATGAAGGG 60.119 52.174 0.00 0.00 0.00 3.95
403 407 0.179048 TATGGCTTGCGTCATGGGAG 60.179 55.000 0.00 0.00 35.91 4.30
404 408 0.179048 CTATGGCTTGCGTCATGGGA 60.179 55.000 0.00 0.00 35.91 4.37
428 432 5.295292 CCTTGTTCTTTGCATCATCGACTAT 59.705 40.000 0.00 0.00 0.00 2.12
441 445 3.359654 GCGTGTTGTACCTTGTTCTTTG 58.640 45.455 0.00 0.00 0.00 2.77
442 446 2.356695 GGCGTGTTGTACCTTGTTCTTT 59.643 45.455 0.00 0.00 0.00 2.52
466 470 1.372087 CCTTCCGTGCTCTTGATGCC 61.372 60.000 0.00 0.00 0.00 4.40
468 472 1.363744 GACCTTCCGTGCTCTTGATG 58.636 55.000 0.00 0.00 0.00 3.07
476 480 3.857909 GAAGTCGACCTTCCGTGC 58.142 61.111 13.01 0.00 43.25 5.34
486 490 1.135112 CACGATGATGGGTGAAGTCGA 60.135 52.381 0.00 0.00 36.25 4.20
583 588 4.077982 ACCCCCTAGTTCTCAAGGATATGA 60.078 45.833 0.00 0.00 34.58 2.15
597 602 0.984995 GTCTGAGCAAACCCCCTAGT 59.015 55.000 0.00 0.00 0.00 2.57
621 626 9.986833 TGATTATCTTTATGATGTTTGTTGTCG 57.013 29.630 0.00 0.00 36.65 4.35
627 632 9.752961 TTGCCATGATTATCTTTATGATGTTTG 57.247 29.630 0.00 0.00 36.65 2.93
670 675 7.253421 AGGTGGATCCCTATGTGTATTACATA 58.747 38.462 9.90 0.00 46.58 2.29
674 679 6.261435 CCTAGGTGGATCCCTATGTGTATTA 58.739 44.000 9.90 0.00 36.51 0.98
687 692 4.790718 ATACCAAAACCCTAGGTGGATC 57.209 45.455 20.24 0.00 35.34 3.36
726 731 1.211743 CACCGTCACCATCATCATCG 58.788 55.000 0.00 0.00 0.00 3.84
740 745 1.292223 CTCCGACATCAACCACCGT 59.708 57.895 0.00 0.00 0.00 4.83
743 748 1.404315 GGAGACTCCGACATCAACCAC 60.404 57.143 5.55 0.00 0.00 4.16
751 756 1.550524 CCAATCAAGGAGACTCCGACA 59.449 52.381 15.97 3.92 42.75 4.35
754 759 0.905357 ACCCAATCAAGGAGACTCCG 59.095 55.000 15.97 2.92 42.75 4.63
773 778 3.430862 GCTTCGCCACGCCATCAA 61.431 61.111 0.00 0.00 0.00 2.57
787 792 0.681243 GGAAATCGGCAGAAGGGCTT 60.681 55.000 0.00 0.00 40.61 4.35
788 793 1.077429 GGAAATCGGCAGAAGGGCT 60.077 57.895 0.00 0.00 40.61 5.19
797 802 0.250510 GATCTGGAGGGGAAATCGGC 60.251 60.000 0.00 0.00 0.00 5.54
804 809 1.298953 CAAAAGGGATCTGGAGGGGA 58.701 55.000 0.00 0.00 0.00 4.81
810 815 1.684248 CTGCCTCCAAAAGGGATCTGG 60.684 57.143 0.00 0.00 45.69 3.86
811 816 1.684248 CCTGCCTCCAAAAGGGATCTG 60.684 57.143 0.00 0.00 45.69 2.90
844 849 4.051922 ACTGAGAAATCAGAACACACGAC 58.948 43.478 12.00 0.00 39.99 4.34
846 851 6.096036 AGATACTGAGAAATCAGAACACACG 58.904 40.000 12.00 0.00 39.99 4.49
854 859 5.832595 TGGAGAGGAGATACTGAGAAATCAG 59.167 44.000 3.76 3.76 43.03 2.90
856 861 6.493115 TCATGGAGAGGAGATACTGAGAAATC 59.507 42.308 0.00 0.00 0.00 2.17
867 872 4.446023 GCTTTTGGATCATGGAGAGGAGAT 60.446 45.833 0.00 0.00 0.00 2.75
918 924 1.019278 ACAAAGTAGCATCGCCACCG 61.019 55.000 0.00 0.00 0.00 4.94
924 930 1.513178 CGCTCGTACAAAGTAGCATCG 59.487 52.381 0.00 0.00 34.60 3.84
994 1000 1.065126 AGAAAGCAGACACATAGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
996 1002 3.431486 GGAGAGAAAGCAGACACATAGGG 60.431 52.174 0.00 0.00 0.00 3.53
1003 1009 1.722034 AGTGGGAGAGAAAGCAGACA 58.278 50.000 0.00 0.00 0.00 3.41
1029 1035 7.330946 GTGATAATAGCGTACCATATGAAGCAA 59.669 37.037 3.65 0.00 0.00 3.91
1044 1050 5.922739 TGCTAATTGGTGTGATAATAGCG 57.077 39.130 0.00 0.00 0.00 4.26
1080 1086 8.348507 AGAATTAAAGAAGAGAACAACAAGCAG 58.651 33.333 0.00 0.00 0.00 4.24
1097 1103 8.806146 TGAAAGAGGGGATTTGAAGAATTAAAG 58.194 33.333 0.00 0.00 0.00 1.85
1119 1125 8.648698 TTGATTTCACCTGGATCTTAATGAAA 57.351 30.769 0.00 13.98 39.58 2.69
1158 1164 3.233164 TCATGATTTTATCGCGTTCGC 57.767 42.857 5.77 7.14 35.26 4.70
1160 1166 6.912591 AGGATTTTCATGATTTTATCGCGTTC 59.087 34.615 5.77 0.00 0.00 3.95
1183 1189 6.741992 TCTTGTTTTGCACATAGTCATAGG 57.258 37.500 0.00 0.00 34.43 2.57
1221 1239 6.436843 AGAACAAATTTAGGCTAACCGATG 57.563 37.500 6.43 6.71 42.76 3.84
1222 1240 7.462571 AAAGAACAAATTTAGGCTAACCGAT 57.537 32.000 6.43 0.00 42.76 4.18
1230 1248 7.652727 AGAGAGTGAAAAGAACAAATTTAGGC 58.347 34.615 0.00 0.00 0.00 3.93
1235 1253 8.743714 ACAAAGAGAGAGTGAAAAGAACAAATT 58.256 29.630 0.00 0.00 0.00 1.82
1240 1260 6.910536 TGACAAAGAGAGAGTGAAAAGAAC 57.089 37.500 0.00 0.00 0.00 3.01
1291 1311 4.873724 TCCAAAAGGGGTCCTATAAAGG 57.126 45.455 0.00 0.00 40.00 3.11
1302 1322 5.629125 TCATTTTCCAAATTCCAAAAGGGG 58.371 37.500 0.00 0.00 37.22 4.79
1330 1350 4.040829 TCTCACAAACATGATCCTCTGTGT 59.959 41.667 0.00 0.00 36.43 3.72
1332 1352 4.897509 TCTCACAAACATGATCCTCTGT 57.102 40.909 0.00 0.00 0.00 3.41
1333 1353 4.092529 CGTTCTCACAAACATGATCCTCTG 59.907 45.833 0.00 0.00 0.00 3.35
1340 1360 4.819088 TCAATTCCGTTCTCACAAACATGA 59.181 37.500 0.00 0.00 0.00 3.07
1373 1393 1.446272 CTCTTCGTTGGAGGGCGAC 60.446 63.158 0.00 0.00 36.82 5.19
1375 1395 2.815647 GCTCTTCGTTGGAGGGCG 60.816 66.667 0.00 0.00 0.00 6.13
1385 1405 1.541147 TGGAAAGGCAATTGCTCTTCG 59.459 47.619 28.42 0.00 41.70 3.79
1397 1417 2.036346 ACAATTGAGCAGTTGGAAAGGC 59.964 45.455 13.59 0.00 33.05 4.35
1398 1418 4.326504 AACAATTGAGCAGTTGGAAAGG 57.673 40.909 13.59 0.00 33.05 3.11
1408 1429 6.942532 AACACTTAGAGAAACAATTGAGCA 57.057 33.333 13.59 0.00 0.00 4.26
1446 1467 2.287188 GGCACATCACTAATGCGGATTG 60.287 50.000 12.93 5.09 40.37 2.67
1447 1468 1.949525 GGCACATCACTAATGCGGATT 59.050 47.619 7.49 7.49 40.37 3.01
1448 1469 1.597742 GGCACATCACTAATGCGGAT 58.402 50.000 0.00 0.00 40.37 4.18
1452 1488 4.452114 TCATTATCGGCACATCACTAATGC 59.548 41.667 0.00 0.00 39.12 3.56
1458 1494 5.422666 TTGATTCATTATCGGCACATCAC 57.577 39.130 0.00 0.00 35.94 3.06
1462 1498 7.099266 AGAATTTTGATTCATTATCGGCACA 57.901 32.000 2.41 0.00 35.94 4.57
1487 1523 9.414295 CAAGGTCAATTGCCAATTACATATATG 57.586 33.333 11.29 11.29 0.00 1.78
1489 1525 8.412456 CACAAGGTCAATTGCCAATTACATATA 58.588 33.333 17.54 0.00 33.28 0.86
1499 1535 0.388659 GTGCACAAGGTCAATTGCCA 59.611 50.000 13.17 0.00 33.86 4.92
1702 1739 1.694133 GCAGCTCTAGATGTGGCCCT 61.694 60.000 0.00 0.00 33.30 5.19
1800 1837 9.626045 GCTACATAAAGTGTTTAAATTCAGCTT 57.374 29.630 0.00 0.00 42.29 3.74
1809 1846 9.731819 CTCTATCGAGCTACATAAAGTGTTTAA 57.268 33.333 0.00 0.00 42.29 1.52
1811 1848 7.997482 TCTCTATCGAGCTACATAAAGTGTTT 58.003 34.615 0.00 0.00 38.44 2.83
1878 1915 1.112113 ATGACGTCGGGCTATCAAGT 58.888 50.000 11.62 0.00 0.00 3.16
1970 2037 7.039082 TGCTTAATTAGGCTTCCATGTTTTCTT 60.039 33.333 19.03 0.00 0.00 2.52
1973 2040 6.398095 GTGCTTAATTAGGCTTCCATGTTTT 58.602 36.000 19.03 0.00 0.00 2.43
2009 2076 4.314961 TGATCACGTATGATATTGTGGCC 58.685 43.478 0.00 0.00 46.01 5.36
2020 2087 0.923403 CACACGGCTGATCACGTATG 59.077 55.000 10.61 6.86 42.04 2.39
2170 2240 6.329496 CACAACACAACATAAGAAACCACTT 58.671 36.000 0.00 0.00 0.00 3.16
2180 2250 7.710676 AATAATAGGCCACAACACAACATAA 57.289 32.000 5.01 0.00 0.00 1.90
2276 2376 6.573434 CAGTAGAAAGTGGCTCATACACATA 58.427 40.000 0.00 0.00 41.21 2.29
2277 2377 5.423015 CAGTAGAAAGTGGCTCATACACAT 58.577 41.667 0.00 0.00 41.21 3.21
2280 2380 3.515502 AGCAGTAGAAAGTGGCTCATACA 59.484 43.478 0.00 0.00 0.00 2.29
2337 2438 9.422681 AGGTTCAGCTCAGATTATACTAAAGTA 57.577 33.333 0.00 0.00 34.67 2.24
2339 2440 9.906660 CTAGGTTCAGCTCAGATTATACTAAAG 57.093 37.037 0.00 0.00 0.00 1.85
2360 2461 0.251653 TGGAGCGAGTTGGACTAGGT 60.252 55.000 0.00 0.00 34.35 3.08
2427 2529 2.564062 ACTGAATGACCAAATTGCAGGG 59.436 45.455 0.00 0.00 0.00 4.45
2446 2548 5.041191 ACTCTGATTGAACAGTCCAAACT 57.959 39.130 0.00 0.00 38.79 2.66
2448 2550 4.997395 GCTACTCTGATTGAACAGTCCAAA 59.003 41.667 0.00 0.00 38.79 3.28
2491 2593 8.561769 TGACCCCCTATCTTCAATGTTATTTAA 58.438 33.333 0.00 0.00 0.00 1.52
2492 2594 7.996644 GTGACCCCCTATCTTCAATGTTATTTA 59.003 37.037 0.00 0.00 0.00 1.40
2493 2595 6.833933 GTGACCCCCTATCTTCAATGTTATTT 59.166 38.462 0.00 0.00 0.00 1.40
2494 2596 6.160459 AGTGACCCCCTATCTTCAATGTTATT 59.840 38.462 0.00 0.00 0.00 1.40
2495 2597 5.672194 AGTGACCCCCTATCTTCAATGTTAT 59.328 40.000 0.00 0.00 0.00 1.89
2498 2600 3.464828 AGTGACCCCCTATCTTCAATGT 58.535 45.455 0.00 0.00 0.00 2.71
2499 2601 4.510167 AAGTGACCCCCTATCTTCAATG 57.490 45.455 0.00 0.00 0.00 2.82
2501 2603 3.913799 TCAAAGTGACCCCCTATCTTCAA 59.086 43.478 0.00 0.00 0.00 2.69
2502 2604 3.263425 GTCAAAGTGACCCCCTATCTTCA 59.737 47.826 0.00 0.00 41.37 3.02
2503 2605 3.679083 CGTCAAAGTGACCCCCTATCTTC 60.679 52.174 2.91 0.00 44.20 2.87
2504 2606 2.236395 CGTCAAAGTGACCCCCTATCTT 59.764 50.000 2.91 0.00 44.20 2.40
2505 2607 1.831736 CGTCAAAGTGACCCCCTATCT 59.168 52.381 2.91 0.00 44.20 1.98
2506 2608 1.553704 ACGTCAAAGTGACCCCCTATC 59.446 52.381 2.91 0.00 44.20 2.08
2508 2610 2.173519 CTACGTCAAAGTGACCCCCTA 58.826 52.381 0.00 0.00 44.20 3.53
2509 2611 0.974383 CTACGTCAAAGTGACCCCCT 59.026 55.000 0.00 0.00 44.20 4.79
2510 2612 0.683412 ACTACGTCAAAGTGACCCCC 59.317 55.000 0.00 0.00 44.20 5.40
2511 2613 2.036862 AGAACTACGTCAAAGTGACCCC 59.963 50.000 0.00 0.00 44.20 4.95
2512 2614 3.382048 AGAACTACGTCAAAGTGACCC 57.618 47.619 0.00 0.00 44.20 4.46
2513 2615 5.729974 AAAAGAACTACGTCAAAGTGACC 57.270 39.130 0.00 0.00 44.20 4.02
2541 2643 8.528643 CCATGATTATACTGCCATGATTCAAAT 58.471 33.333 0.00 0.00 38.83 2.32
2542 2644 7.506599 ACCATGATTATACTGCCATGATTCAAA 59.493 33.333 0.00 0.00 38.83 2.69
2543 2645 7.005902 ACCATGATTATACTGCCATGATTCAA 58.994 34.615 0.00 0.00 38.83 2.69
2546 2648 6.432162 GTGACCATGATTATACTGCCATGATT 59.568 38.462 0.00 0.00 38.83 2.57
2549 2651 4.152938 CGTGACCATGATTATACTGCCATG 59.847 45.833 0.00 0.00 36.92 3.66
2550 2652 4.202357 ACGTGACCATGATTATACTGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
2551 2653 3.133901 ACGTGACCATGATTATACTGCCA 59.866 43.478 0.00 0.00 0.00 4.92
2553 2655 6.479001 AGTTAACGTGACCATGATTATACTGC 59.521 38.462 0.00 0.00 0.00 4.40
2556 2658 8.644318 AGAAGTTAACGTGACCATGATTATAC 57.356 34.615 0.00 0.00 0.00 1.47
2557 2659 9.661563 AAAGAAGTTAACGTGACCATGATTATA 57.338 29.630 0.00 0.00 0.00 0.98
2558 2660 8.561738 AAAGAAGTTAACGTGACCATGATTAT 57.438 30.769 0.00 0.00 0.00 1.28
2560 2662 6.877611 AAAGAAGTTAACGTGACCATGATT 57.122 33.333 0.00 0.00 0.00 2.57
2561 2663 6.877611 AAAAGAAGTTAACGTGACCATGAT 57.122 33.333 0.00 0.00 0.00 2.45
2562 2664 6.687081 AAAAAGAAGTTAACGTGACCATGA 57.313 33.333 0.00 0.00 0.00 3.07
2584 2686 9.689976 TGAATAGATTGAAAATTTCTCGCAAAA 57.310 25.926 7.29 0.00 0.00 2.44
2585 2687 9.859427 ATGAATAGATTGAAAATTTCTCGCAAA 57.141 25.926 7.29 0.00 0.00 3.68
2586 2688 9.859427 AATGAATAGATTGAAAATTTCTCGCAA 57.141 25.926 7.29 0.00 0.00 4.85
2587 2689 9.507280 GAATGAATAGATTGAAAATTTCTCGCA 57.493 29.630 7.29 0.00 0.00 5.10
2588 2690 9.727627 AGAATGAATAGATTGAAAATTTCTCGC 57.272 29.630 7.29 0.00 0.00 5.03
2598 2700 8.573885 GCCATGATTGAGAATGAATAGATTGAA 58.426 33.333 0.00 0.00 0.00 2.69
2599 2701 7.722285 TGCCATGATTGAGAATGAATAGATTGA 59.278 33.333 0.00 0.00 0.00 2.57
2600 2702 7.882179 TGCCATGATTGAGAATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
2601 2703 8.473358 TTGCCATGATTGAGAATGAATAGATT 57.527 30.769 0.00 0.00 0.00 2.40
2602 2704 8.651589 ATTGCCATGATTGAGAATGAATAGAT 57.348 30.769 0.00 0.00 0.00 1.98
2603 2705 9.006839 GTATTGCCATGATTGAGAATGAATAGA 57.993 33.333 0.00 0.00 0.00 1.98
2604 2706 8.789762 TGTATTGCCATGATTGAGAATGAATAG 58.210 33.333 0.00 0.00 0.00 1.73
2605 2707 8.694581 TGTATTGCCATGATTGAGAATGAATA 57.305 30.769 0.00 0.00 0.00 1.75
2606 2708 7.591421 TGTATTGCCATGATTGAGAATGAAT 57.409 32.000 0.00 0.00 0.00 2.57
2607 2709 7.407393 TTGTATTGCCATGATTGAGAATGAA 57.593 32.000 0.00 0.00 0.00 2.57
2608 2710 7.339976 TCTTTGTATTGCCATGATTGAGAATGA 59.660 33.333 0.00 0.00 0.00 2.57
2609 2711 7.485810 TCTTTGTATTGCCATGATTGAGAATG 58.514 34.615 0.00 0.00 0.00 2.67
2610 2712 7.649533 TCTTTGTATTGCCATGATTGAGAAT 57.350 32.000 0.00 0.00 0.00 2.40
2611 2713 7.039853 TGTTCTTTGTATTGCCATGATTGAGAA 60.040 33.333 0.00 0.00 0.00 2.87
2612 2714 6.433716 TGTTCTTTGTATTGCCATGATTGAGA 59.566 34.615 0.00 0.00 0.00 3.27
2613 2715 6.623486 TGTTCTTTGTATTGCCATGATTGAG 58.377 36.000 0.00 0.00 0.00 3.02
2614 2716 6.587206 TGTTCTTTGTATTGCCATGATTGA 57.413 33.333 0.00 0.00 0.00 2.57
2615 2717 6.645827 TGTTGTTCTTTGTATTGCCATGATTG 59.354 34.615 0.00 0.00 0.00 2.67
2616 2718 6.757237 TGTTGTTCTTTGTATTGCCATGATT 58.243 32.000 0.00 0.00 0.00 2.57
2617 2719 6.209192 TCTGTTGTTCTTTGTATTGCCATGAT 59.791 34.615 0.00 0.00 0.00 2.45
2618 2720 5.534278 TCTGTTGTTCTTTGTATTGCCATGA 59.466 36.000 0.00 0.00 0.00 3.07
2619 2721 5.771469 TCTGTTGTTCTTTGTATTGCCATG 58.229 37.500 0.00 0.00 0.00 3.66
2620 2722 5.047802 CCTCTGTTGTTCTTTGTATTGCCAT 60.048 40.000 0.00 0.00 0.00 4.40
2621 2723 4.278170 CCTCTGTTGTTCTTTGTATTGCCA 59.722 41.667 0.00 0.00 0.00 4.92
2622 2724 4.278419 ACCTCTGTTGTTCTTTGTATTGCC 59.722 41.667 0.00 0.00 0.00 4.52
2623 2725 5.438761 ACCTCTGTTGTTCTTTGTATTGC 57.561 39.130 0.00 0.00 0.00 3.56
2643 2745 9.498307 CGAGGACATTGTTGTAATTTTATTACC 57.502 33.333 7.01 0.00 35.79 2.85
2646 2748 9.620660 GTTCGAGGACATTGTTGTAATTTTATT 57.379 29.630 0.00 0.00 35.79 1.40
2647 2749 8.241367 GGTTCGAGGACATTGTTGTAATTTTAT 58.759 33.333 0.00 0.00 35.79 1.40
2648 2750 7.228906 TGGTTCGAGGACATTGTTGTAATTTTA 59.771 33.333 0.00 0.00 35.79 1.52
2649 2751 6.039941 TGGTTCGAGGACATTGTTGTAATTTT 59.960 34.615 0.00 0.00 35.79 1.82
2650 2752 5.533154 TGGTTCGAGGACATTGTTGTAATTT 59.467 36.000 0.00 0.00 35.79 1.82
2651 2753 5.048991 GTGGTTCGAGGACATTGTTGTAATT 60.049 40.000 0.00 0.00 35.79 1.40
2652 2754 4.454504 GTGGTTCGAGGACATTGTTGTAAT 59.545 41.667 0.00 0.00 35.79 1.89
2653 2755 3.810941 GTGGTTCGAGGACATTGTTGTAA 59.189 43.478 0.00 0.00 35.79 2.41
2654 2756 3.395639 GTGGTTCGAGGACATTGTTGTA 58.604 45.455 0.00 0.00 35.79 2.41
2655 2757 2.218603 GTGGTTCGAGGACATTGTTGT 58.781 47.619 0.00 0.00 39.32 3.32
2656 2758 1.535462 GGTGGTTCGAGGACATTGTTG 59.465 52.381 0.00 0.00 0.00 3.33
2657 2759 1.420138 AGGTGGTTCGAGGACATTGTT 59.580 47.619 0.00 0.00 0.00 2.83
2658 2760 1.056660 AGGTGGTTCGAGGACATTGT 58.943 50.000 0.00 0.00 0.00 2.71
2659 2761 2.893637 CTAGGTGGTTCGAGGACATTG 58.106 52.381 0.00 0.00 0.00 2.82
2660 2762 1.207329 GCTAGGTGGTTCGAGGACATT 59.793 52.381 0.00 0.00 0.00 2.71
2661 2763 0.824759 GCTAGGTGGTTCGAGGACAT 59.175 55.000 0.00 0.00 0.00 3.06
2662 2764 1.592400 CGCTAGGTGGTTCGAGGACA 61.592 60.000 0.00 0.00 0.00 4.02
2663 2765 1.139095 CGCTAGGTGGTTCGAGGAC 59.861 63.158 0.00 0.00 0.00 3.85
2664 2766 1.001764 TCGCTAGGTGGTTCGAGGA 60.002 57.895 0.00 0.00 0.00 3.71
2665 2767 1.139095 GTCGCTAGGTGGTTCGAGG 59.861 63.158 0.00 0.00 0.00 4.63
2666 2768 1.139095 GGTCGCTAGGTGGTTCGAG 59.861 63.158 0.00 0.00 0.00 4.04
2667 2769 0.968901 ATGGTCGCTAGGTGGTTCGA 60.969 55.000 0.00 0.00 0.00 3.71
2668 2770 0.742505 TATGGTCGCTAGGTGGTTCG 59.257 55.000 0.00 0.00 0.00 3.95
2669 2771 2.547826 GTTATGGTCGCTAGGTGGTTC 58.452 52.381 0.00 0.00 0.00 3.62
2670 2772 1.208776 GGTTATGGTCGCTAGGTGGTT 59.791 52.381 0.00 0.00 0.00 3.67
2671 2773 0.828677 GGTTATGGTCGCTAGGTGGT 59.171 55.000 0.00 0.00 0.00 4.16
2672 2774 0.828022 TGGTTATGGTCGCTAGGTGG 59.172 55.000 0.00 0.00 0.00 4.61
2673 2775 2.158957 ACATGGTTATGGTCGCTAGGTG 60.159 50.000 0.00 0.00 38.66 4.00
2674 2776 2.102588 GACATGGTTATGGTCGCTAGGT 59.897 50.000 0.00 0.00 38.66 3.08
2675 2777 2.755650 GACATGGTTATGGTCGCTAGG 58.244 52.381 0.00 0.00 38.66 3.02
2676 2778 2.034179 TCGACATGGTTATGGTCGCTAG 59.966 50.000 8.39 0.00 38.66 3.42
2677 2779 2.025898 TCGACATGGTTATGGTCGCTA 58.974 47.619 8.39 0.00 38.66 4.26
2678 2780 0.821517 TCGACATGGTTATGGTCGCT 59.178 50.000 8.39 0.00 38.66 4.93
2679 2781 1.792949 GATCGACATGGTTATGGTCGC 59.207 52.381 8.39 0.00 38.66 5.19
2680 2782 3.092334 TGATCGACATGGTTATGGTCG 57.908 47.619 7.05 7.05 38.66 4.79
2681 2783 4.631131 TGATGATCGACATGGTTATGGTC 58.369 43.478 0.00 0.00 39.56 4.02
2682 2784 4.687901 TGATGATCGACATGGTTATGGT 57.312 40.909 0.00 0.00 39.56 3.55
2683 2785 5.702209 TCAATGATGATCGACATGGTTATGG 59.298 40.000 0.00 0.00 39.56 2.74
2684 2786 6.426025 AGTCAATGATGATCGACATGGTTATG 59.574 38.462 0.00 0.00 39.56 1.90
2685 2787 6.528321 AGTCAATGATGATCGACATGGTTAT 58.472 36.000 0.00 0.00 39.56 1.89
2686 2788 5.917462 AGTCAATGATGATCGACATGGTTA 58.083 37.500 0.00 0.00 39.56 2.85
2687 2789 4.774124 AGTCAATGATGATCGACATGGTT 58.226 39.130 0.00 0.00 39.56 3.67
2688 2790 4.412796 AGTCAATGATGATCGACATGGT 57.587 40.909 0.00 0.00 39.56 3.55
2689 2791 5.746307 AAAGTCAATGATGATCGACATGG 57.254 39.130 0.00 3.35 39.56 3.66
2730 2832 9.349713 TGTGAGTGGATCTAAAATTTTGTTACT 57.650 29.630 13.76 8.70 0.00 2.24
2731 2833 9.394477 GTGTGAGTGGATCTAAAATTTTGTTAC 57.606 33.333 13.76 4.55 0.00 2.50
2732 2834 8.573035 GGTGTGAGTGGATCTAAAATTTTGTTA 58.427 33.333 13.76 0.00 0.00 2.41
2733 2835 7.069331 TGGTGTGAGTGGATCTAAAATTTTGTT 59.931 33.333 13.76 0.00 0.00 2.83
2734 2836 6.549364 TGGTGTGAGTGGATCTAAAATTTTGT 59.451 34.615 13.76 0.00 0.00 2.83
2735 2837 6.980593 TGGTGTGAGTGGATCTAAAATTTTG 58.019 36.000 13.76 4.15 0.00 2.44
2736 2838 7.781324 ATGGTGTGAGTGGATCTAAAATTTT 57.219 32.000 8.75 8.75 0.00 1.82
2737 2839 7.451255 TGAATGGTGTGAGTGGATCTAAAATTT 59.549 33.333 0.00 0.00 0.00 1.82
2738 2840 6.947733 TGAATGGTGTGAGTGGATCTAAAATT 59.052 34.615 0.00 0.00 0.00 1.82
2739 2841 6.375455 GTGAATGGTGTGAGTGGATCTAAAAT 59.625 38.462 0.00 0.00 0.00 1.82
2740 2842 5.705441 GTGAATGGTGTGAGTGGATCTAAAA 59.295 40.000 0.00 0.00 0.00 1.52
2741 2843 5.245531 GTGAATGGTGTGAGTGGATCTAAA 58.754 41.667 0.00 0.00 0.00 1.85
2742 2844 4.620567 CGTGAATGGTGTGAGTGGATCTAA 60.621 45.833 0.00 0.00 0.00 2.10
2743 2845 3.119137 CGTGAATGGTGTGAGTGGATCTA 60.119 47.826 0.00 0.00 0.00 1.98
2744 2846 2.354103 CGTGAATGGTGTGAGTGGATCT 60.354 50.000 0.00 0.00 0.00 2.75
2745 2847 2.002586 CGTGAATGGTGTGAGTGGATC 58.997 52.381 0.00 0.00 0.00 3.36
2746 2848 1.339055 CCGTGAATGGTGTGAGTGGAT 60.339 52.381 0.00 0.00 0.00 3.41
2747 2849 0.034756 CCGTGAATGGTGTGAGTGGA 59.965 55.000 0.00 0.00 0.00 4.02
2748 2850 0.955428 CCCGTGAATGGTGTGAGTGG 60.955 60.000 0.00 0.00 0.00 4.00
2749 2851 0.034756 TCCCGTGAATGGTGTGAGTG 59.965 55.000 0.00 0.00 0.00 3.51
2750 2852 0.321671 CTCCCGTGAATGGTGTGAGT 59.678 55.000 0.00 0.00 0.00 3.41
2751 2853 0.608130 TCTCCCGTGAATGGTGTGAG 59.392 55.000 0.00 0.00 0.00 3.51
2752 2854 1.052617 TTCTCCCGTGAATGGTGTGA 58.947 50.000 0.00 0.00 0.00 3.58
2753 2855 1.890876 TTTCTCCCGTGAATGGTGTG 58.109 50.000 0.00 0.00 0.00 3.82
2754 2856 2.224769 ACATTTCTCCCGTGAATGGTGT 60.225 45.455 0.00 0.00 0.00 4.16
2755 2857 2.436417 ACATTTCTCCCGTGAATGGTG 58.564 47.619 0.00 0.00 0.00 4.17
2756 2858 2.819608 CAACATTTCTCCCGTGAATGGT 59.180 45.455 0.00 0.00 0.00 3.55
2757 2859 3.081061 TCAACATTTCTCCCGTGAATGG 58.919 45.455 0.00 0.00 0.00 3.16
2758 2860 3.119849 GGTCAACATTTCTCCCGTGAATG 60.120 47.826 0.00 0.00 0.00 2.67
2759 2861 3.081804 GGTCAACATTTCTCCCGTGAAT 58.918 45.455 0.00 0.00 0.00 2.57
2760 2862 2.158740 TGGTCAACATTTCTCCCGTGAA 60.159 45.455 0.00 0.00 0.00 3.18
2761 2863 1.418264 TGGTCAACATTTCTCCCGTGA 59.582 47.619 0.00 0.00 0.00 4.35
2762 2864 1.890876 TGGTCAACATTTCTCCCGTG 58.109 50.000 0.00 0.00 0.00 4.94
2763 2865 2.879103 ATGGTCAACATTTCTCCCGT 57.121 45.000 0.00 0.00 35.97 5.28
2772 2874 5.804944 TTCAAATGGTCAATGGTCAACAT 57.195 34.783 0.00 0.00 43.07 2.71
2773 2875 5.804944 ATTCAAATGGTCAATGGTCAACA 57.195 34.783 0.00 0.00 0.00 3.33
2774 2876 8.776376 ATAAATTCAAATGGTCAATGGTCAAC 57.224 30.769 0.00 0.00 0.00 3.18
2775 2877 9.217278 CAATAAATTCAAATGGTCAATGGTCAA 57.783 29.630 0.00 0.00 0.00 3.18
2776 2878 7.333921 GCAATAAATTCAAATGGTCAATGGTCA 59.666 33.333 0.00 0.00 0.00 4.02
2777 2879 7.550196 AGCAATAAATTCAAATGGTCAATGGTC 59.450 33.333 0.00 0.00 0.00 4.02
2778 2880 7.396418 AGCAATAAATTCAAATGGTCAATGGT 58.604 30.769 0.00 0.00 0.00 3.55
2779 2881 7.852971 AGCAATAAATTCAAATGGTCAATGG 57.147 32.000 0.00 0.00 0.00 3.16
2780 2882 8.392612 GGAAGCAATAAATTCAAATGGTCAATG 58.607 33.333 0.00 0.00 0.00 2.82
2781 2883 7.553760 GGGAAGCAATAAATTCAAATGGTCAAT 59.446 33.333 0.00 0.00 0.00 2.57
2782 2884 6.878389 GGGAAGCAATAAATTCAAATGGTCAA 59.122 34.615 0.00 0.00 0.00 3.18
2783 2885 6.405538 GGGAAGCAATAAATTCAAATGGTCA 58.594 36.000 0.00 0.00 0.00 4.02
2784 2886 5.817296 GGGGAAGCAATAAATTCAAATGGTC 59.183 40.000 0.00 0.00 0.00 4.02
2785 2887 5.250313 TGGGGAAGCAATAAATTCAAATGGT 59.750 36.000 0.00 0.00 0.00 3.55
2786 2888 5.743117 TGGGGAAGCAATAAATTCAAATGG 58.257 37.500 0.00 0.00 0.00 3.16
2787 2889 7.684937 TTTGGGGAAGCAATAAATTCAAATG 57.315 32.000 0.00 0.00 0.00 2.32
2788 2890 7.148035 GCATTTGGGGAAGCAATAAATTCAAAT 60.148 33.333 0.00 0.00 34.08 2.32
2789 2891 6.150809 GCATTTGGGGAAGCAATAAATTCAAA 59.849 34.615 0.00 0.00 0.00 2.69
2790 2892 5.647225 GCATTTGGGGAAGCAATAAATTCAA 59.353 36.000 0.00 0.00 0.00 2.69
2791 2893 5.045724 AGCATTTGGGGAAGCAATAAATTCA 60.046 36.000 0.00 0.00 0.00 2.57
2792 2894 5.430886 AGCATTTGGGGAAGCAATAAATTC 58.569 37.500 0.00 0.00 0.00 2.17
2793 2895 5.440207 AGCATTTGGGGAAGCAATAAATT 57.560 34.783 0.00 0.00 0.00 1.82
2794 2896 5.430886 GAAGCATTTGGGGAAGCAATAAAT 58.569 37.500 0.00 0.00 0.00 1.40
2795 2897 4.323409 GGAAGCATTTGGGGAAGCAATAAA 60.323 41.667 0.00 0.00 0.00 1.40
2796 2898 3.197549 GGAAGCATTTGGGGAAGCAATAA 59.802 43.478 0.00 0.00 0.00 1.40
2797 2899 2.765699 GGAAGCATTTGGGGAAGCAATA 59.234 45.455 0.00 0.00 0.00 1.90
2798 2900 1.556451 GGAAGCATTTGGGGAAGCAAT 59.444 47.619 0.00 0.00 0.00 3.56
2799 2901 0.975887 GGAAGCATTTGGGGAAGCAA 59.024 50.000 0.00 0.00 0.00 3.91
2800 2902 1.250154 CGGAAGCATTTGGGGAAGCA 61.250 55.000 0.00 0.00 0.00 3.91
2801 2903 1.512694 CGGAAGCATTTGGGGAAGC 59.487 57.895 0.00 0.00 0.00 3.86
2813 2915 4.027050 GTACTACGAGTATTTTGCGGAAGC 60.027 45.833 0.00 0.00 45.05 3.86
2814 2916 5.338365 AGTACTACGAGTATTTTGCGGAAG 58.662 41.667 0.00 0.00 32.65 3.46
2815 2917 5.314923 AGTACTACGAGTATTTTGCGGAA 57.685 39.130 0.00 0.00 32.65 4.30
2816 2918 4.970662 AGTACTACGAGTATTTTGCGGA 57.029 40.909 0.00 0.00 32.65 5.54
2817 2919 7.689953 ATTTAGTACTACGAGTATTTTGCGG 57.310 36.000 0.91 0.00 32.65 5.69
2826 2928 9.909644 CATAGCCAAATATTTAGTACTACGAGT 57.090 33.333 0.91 0.00 0.00 4.18
2827 2929 9.355215 CCATAGCCAAATATTTAGTACTACGAG 57.645 37.037 0.91 0.00 0.00 4.18
2828 2930 8.863086 ACCATAGCCAAATATTTAGTACTACGA 58.137 33.333 0.91 0.00 0.00 3.43
2829 2931 8.922676 CACCATAGCCAAATATTTAGTACTACG 58.077 37.037 0.91 0.00 0.00 3.51
2830 2932 9.216117 CCACCATAGCCAAATATTTAGTACTAC 57.784 37.037 0.91 0.00 0.00 2.73
2831 2933 9.161572 TCCACCATAGCCAAATATTTAGTACTA 57.838 33.333 0.00 0.00 0.00 1.82
2832 2934 8.041143 TCCACCATAGCCAAATATTTAGTACT 57.959 34.615 0.00 0.00 0.00 2.73
2833 2935 7.094762 GCTCCACCATAGCCAAATATTTAGTAC 60.095 40.741 0.00 0.00 33.73 2.73
2834 2936 6.940298 GCTCCACCATAGCCAAATATTTAGTA 59.060 38.462 0.00 0.00 33.73 1.82
2835 2937 5.770162 GCTCCACCATAGCCAAATATTTAGT 59.230 40.000 0.00 0.00 33.73 2.24
2836 2938 6.006449 AGCTCCACCATAGCCAAATATTTAG 58.994 40.000 0.00 0.00 41.02 1.85
2837 2939 5.952387 AGCTCCACCATAGCCAAATATTTA 58.048 37.500 0.00 0.00 41.02 1.40
2838 2940 4.808042 AGCTCCACCATAGCCAAATATTT 58.192 39.130 0.00 0.00 41.02 1.40
2839 2941 4.141181 TGAGCTCCACCATAGCCAAATATT 60.141 41.667 12.15 0.00 41.02 1.28
2859 2961 1.107538 CAAGGGCAGCCATGGATGAG 61.108 60.000 33.58 8.74 32.62 2.90
2901 3003 0.738975 CTGGTACTTCCGCGAGATGA 59.261 55.000 8.23 0.00 39.52 2.92
2903 3005 0.739561 GACTGGTACTTCCGCGAGAT 59.260 55.000 8.23 0.00 39.52 2.75
3207 3349 0.259065 TCGGGCAGAGTATGAGTCCT 59.741 55.000 0.00 0.00 0.00 3.85
3382 3531 1.000396 GGAGGAGGCAATGGCAGTT 60.000 57.895 10.05 0.00 43.71 3.16
3510 3659 4.024984 CCCCTCCACTCCCCTCCA 62.025 72.222 0.00 0.00 0.00 3.86
3663 3833 2.557452 CCCCCATATCCTGCCCAAATAC 60.557 54.545 0.00 0.00 0.00 1.89
3716 3899 2.497273 GGTCATGAAATTTGGACCCAGG 59.503 50.000 16.84 3.02 43.14 4.45
3767 3960 5.571658 GCATCTATAATCGGACCCCTCAAAT 60.572 44.000 0.00 0.00 0.00 2.32
3798 3991 6.014242 TCAATATGAGAGTTTGTGGACAGTCT 60.014 38.462 0.00 0.00 0.00 3.24
3799 3992 6.166279 TCAATATGAGAGTTTGTGGACAGTC 58.834 40.000 0.00 0.00 0.00 3.51
3800 3993 6.114187 TCAATATGAGAGTTTGTGGACAGT 57.886 37.500 0.00 0.00 0.00 3.55
3823 4016 9.273137 CCCTTATATACTCTCCATATTTGGTCT 57.727 37.037 1.86 0.00 44.06 3.85
3834 4027 3.444388 CCACGAGCCCTTATATACTCTCC 59.556 52.174 0.00 0.00 0.00 3.71
3863 4058 3.909662 GTCCTACGTGGCGGACTA 58.090 61.111 19.88 0.00 44.90 2.59
3877 4072 1.076549 TTCAAGGTGGGCCATGTCC 59.923 57.895 10.70 6.51 35.18 4.02
3947 4142 6.355747 TGTGTTCATACTGCCATGATTGATA 58.644 36.000 0.00 0.00 34.95 2.15
3948 4143 5.195185 TGTGTTCATACTGCCATGATTGAT 58.805 37.500 0.00 0.00 34.95 2.57
3985 5530 5.992217 GGTGGTCTATGAATCTGGATGTAAC 59.008 44.000 0.00 0.00 0.00 2.50
4012 5557 4.389992 CGCTTCAGTGTTTGTAGTCATCAT 59.610 41.667 0.00 0.00 0.00 2.45
4072 5617 0.449388 CAAGTTTGATCCAGCTCCGC 59.551 55.000 0.00 0.00 0.00 5.54
4083 5628 5.975344 CGACTGTCTACTACAACAAGTTTGA 59.025 40.000 6.21 0.00 37.74 2.69
4084 5629 5.175126 CCGACTGTCTACTACAACAAGTTTG 59.825 44.000 6.21 0.00 37.74 2.93
4121 5666 0.608308 GTTGGTCTGTGGGGCCTTAC 60.608 60.000 0.84 3.81 0.00 2.34
4132 5677 1.511850 TGTTCTGATGCGTTGGTCTG 58.488 50.000 0.00 0.00 0.00 3.51
4144 5690 5.638596 TCTAGCGATAGTTGTTGTTCTGA 57.361 39.130 7.70 0.00 39.35 3.27
4188 5753 1.137513 GGTTGTCTACGTCAGTGTGC 58.862 55.000 0.00 0.00 0.00 4.57
4206 7108 2.835705 CGGTCGGATCTGGTCTCGG 61.836 68.421 0.62 0.00 0.00 4.63
4248 7151 1.067416 CGGATCTCGCGGGATTCAA 59.933 57.895 26.48 0.00 0.00 2.69
4268 7171 2.408050 GCGTGTGAAGATGTGTCTCTT 58.592 47.619 0.00 0.00 38.18 2.85
4317 8558 4.501743 GGAATAAGGTTCTCTTCGCCTAGG 60.502 50.000 3.67 3.67 36.93 3.02
4341 8592 2.796651 CGGCAGCTTCATGAAGGC 59.203 61.111 31.41 26.25 38.80 4.35
4506 10105 1.152096 AGAACGGTTGACCCCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
4513 10112 1.264288 CAAGCCAAGAGAACGGTTGAC 59.736 52.381 0.00 0.00 0.00 3.18
4514 10113 1.593196 CAAGCCAAGAGAACGGTTGA 58.407 50.000 0.00 0.00 0.00 3.18
4515 10114 0.593128 CCAAGCCAAGAGAACGGTTG 59.407 55.000 0.00 0.00 0.00 3.77
4516 10115 0.472471 TCCAAGCCAAGAGAACGGTT 59.528 50.000 0.00 0.00 0.00 4.44
4518 10117 0.250295 TGTCCAAGCCAAGAGAACGG 60.250 55.000 0.00 0.00 0.00 4.44
4519 10118 1.532868 CTTGTCCAAGCCAAGAGAACG 59.467 52.381 0.00 0.00 41.44 3.95
4520 10119 2.851195 TCTTGTCCAAGCCAAGAGAAC 58.149 47.619 2.09 0.00 42.43 3.01
4524 10123 0.603707 CGCTCTTGTCCAAGCCAAGA 60.604 55.000 2.09 3.16 44.44 3.02
4525 10124 0.603707 TCGCTCTTGTCCAAGCCAAG 60.604 55.000 2.09 0.00 40.51 3.61
4526 10125 0.603707 CTCGCTCTTGTCCAAGCCAA 60.604 55.000 2.09 0.00 38.28 4.52
4527 10126 1.004560 CTCGCTCTTGTCCAAGCCA 60.005 57.895 2.09 0.00 38.28 4.75
4528 10127 1.743252 CCTCGCTCTTGTCCAAGCC 60.743 63.158 2.09 0.00 38.28 4.35
4529 10128 0.739112 CTCCTCGCTCTTGTCCAAGC 60.739 60.000 2.09 0.00 38.28 4.01
4530 10129 0.108424 CCTCCTCGCTCTTGTCCAAG 60.108 60.000 0.47 0.47 39.71 3.61
4531 10130 0.832135 ACCTCCTCGCTCTTGTCCAA 60.832 55.000 0.00 0.00 0.00 3.53
4532 10131 0.832135 AACCTCCTCGCTCTTGTCCA 60.832 55.000 0.00 0.00 0.00 4.02
4533 10132 0.321996 AAACCTCCTCGCTCTTGTCC 59.678 55.000 0.00 0.00 0.00 4.02
4534 10133 1.273886 AGAAACCTCCTCGCTCTTGTC 59.726 52.381 0.00 0.00 0.00 3.18
4535 10134 1.343069 AGAAACCTCCTCGCTCTTGT 58.657 50.000 0.00 0.00 0.00 3.16
4536 10135 2.464157 AAGAAACCTCCTCGCTCTTG 57.536 50.000 0.00 0.00 0.00 3.02
4538 10137 2.252714 AGAAAGAAACCTCCTCGCTCT 58.747 47.619 0.00 0.00 0.00 4.09
4540 10139 2.289756 GGAAGAAAGAAACCTCCTCGCT 60.290 50.000 0.00 0.00 0.00 4.93
4541 10140 2.077627 GGAAGAAAGAAACCTCCTCGC 58.922 52.381 0.00 0.00 0.00 5.03
4542 10141 3.686916 AGGAAGAAAGAAACCTCCTCG 57.313 47.619 0.00 0.00 0.00 4.63
4543 10142 4.757657 GTGAAGGAAGAAAGAAACCTCCTC 59.242 45.833 0.00 0.00 31.89 3.71
4544 10143 4.166144 TGTGAAGGAAGAAAGAAACCTCCT 59.834 41.667 0.00 0.00 31.89 3.69
4546 10145 5.563671 GCATGTGAAGGAAGAAAGAAACCTC 60.564 44.000 0.00 0.00 31.89 3.85
4552 10155 4.276678 CACTTGCATGTGAAGGAAGAAAGA 59.723 41.667 24.41 0.00 40.12 2.52
4593 10212 7.048512 AGCCCCTATTTATTCGTTCATATAGC 58.951 38.462 0.00 0.00 0.00 2.97
4616 10235 1.332904 CGTTGACTGTCCGTTTTGAGC 60.333 52.381 5.17 0.00 0.00 4.26
4639 10258 2.880879 CAGACGTCCACGGATGCG 60.881 66.667 13.01 4.58 44.95 4.73
4640 10259 2.509336 CCAGACGTCCACGGATGC 60.509 66.667 13.01 0.00 44.95 3.91
4641 10260 2.184322 CCCAGACGTCCACGGATG 59.816 66.667 13.01 3.65 44.95 3.51
4642 10261 2.036731 TCCCAGACGTCCACGGAT 59.963 61.111 13.01 0.00 44.95 4.18
4643 10262 2.675423 CTCCCAGACGTCCACGGA 60.675 66.667 13.01 13.30 44.95 4.69
4644 10263 2.675423 TCTCCCAGACGTCCACGG 60.675 66.667 13.01 10.58 44.95 4.94
4649 10268 1.321074 AATCCGGTCTCCCAGACGTC 61.321 60.000 7.70 7.70 45.96 4.34
4654 10273 0.102481 CACGTAATCCGGTCTCCCAG 59.898 60.000 0.00 0.00 42.24 4.45
4656 10275 0.179119 CACACGTAATCCGGTCTCCC 60.179 60.000 0.00 0.00 42.24 4.30
4661 10280 0.899720 ATCCACACACGTAATCCGGT 59.100 50.000 0.00 0.00 42.24 5.28
4663 10282 0.650512 GCATCCACACACGTAATCCG 59.349 55.000 0.00 0.00 44.03 4.18
4669 10288 1.343142 TGTAAGAGCATCCACACACGT 59.657 47.619 0.00 0.00 33.66 4.49
4676 10295 1.337728 CGTGGTGTGTAAGAGCATCCA 60.338 52.381 0.00 0.00 40.66 3.41
4692 10311 1.846648 GATCGTATTCGCTGCGTGG 59.153 57.895 22.48 7.92 36.96 4.94
4697 10316 1.068541 TGGGATCGATCGTATTCGCTG 60.069 52.381 18.81 0.00 38.97 5.18
4716 10335 4.439968 TGATCTATCAGCAAGCTTCACTG 58.560 43.478 16.60 16.60 32.11 3.66
4719 10338 4.141551 ACCATGATCTATCAGCAAGCTTCA 60.142 41.667 0.00 0.00 40.64 3.02
4763 10384 1.587613 GAGCTCGCATGGACTCGTC 60.588 63.158 0.00 0.00 0.00 4.20
4774 10395 3.001736 GGTGATGAATTAACTGAGCTCGC 59.998 47.826 9.64 0.00 0.00 5.03
4785 10406 7.035004 GCAATTAACAAGCTGGTGATGAATTA 58.965 34.615 0.00 0.00 0.00 1.40
4790 10411 4.177165 TGCAATTAACAAGCTGGTGATG 57.823 40.909 0.00 0.00 0.00 3.07
4852 10475 2.425312 CTGCTACCTCTGGACTACACTG 59.575 54.545 0.00 0.00 0.00 3.66
4858 10481 0.616111 CCACCTGCTACCTCTGGACT 60.616 60.000 0.00 0.00 0.00 3.85
4859 10482 0.905337 ACCACCTGCTACCTCTGGAC 60.905 60.000 0.00 0.00 0.00 4.02
5367 10993 4.421479 CGGAGCTGCTCGACGGTT 62.421 66.667 22.25 0.00 0.00 4.44
5689 11321 1.938577 CTCCTTGTGCCGAATCATCTG 59.061 52.381 0.00 0.00 0.00 2.90
5697 11329 3.706373 GCCTCCTCCTTGTGCCGA 61.706 66.667 0.00 0.00 0.00 5.54
5744 11376 1.999071 CTCCGGCGTCTCTCCTTCTG 61.999 65.000 6.01 0.00 0.00 3.02
5772 11404 4.353437 GTCGTCGTTCCCGTGGCT 62.353 66.667 0.00 0.00 35.01 4.75
5905 11537 7.415653 GGCACGAAGAAGAAGATTAATCCAAAT 60.416 37.037 11.92 0.00 0.00 2.32
5909 11541 5.411083 GGCACGAAGAAGAAGATTAATCC 57.589 43.478 11.92 0.00 0.00 3.01
5967 11602 3.038280 ACGTCCTACATCAATCCATCCA 58.962 45.455 0.00 0.00 0.00 3.41
5970 11605 2.771943 ACCACGTCCTACATCAATCCAT 59.228 45.455 0.00 0.00 0.00 3.41
5971 11606 2.093711 CACCACGTCCTACATCAATCCA 60.094 50.000 0.00 0.00 0.00 3.41
5973 11608 3.187700 GTCACCACGTCCTACATCAATC 58.812 50.000 0.00 0.00 0.00 2.67
5974 11609 2.093658 GGTCACCACGTCCTACATCAAT 60.094 50.000 0.00 0.00 0.00 2.57
5975 11610 1.274167 GGTCACCACGTCCTACATCAA 59.726 52.381 0.00 0.00 0.00 2.57
5981 11620 3.376078 GGCGGTCACCACGTCCTA 61.376 66.667 0.00 0.00 0.00 2.94
6081 11720 3.518998 CCACCGCGTCGATCTCCT 61.519 66.667 4.92 0.00 0.00 3.69
6334 11976 2.203788 TCAGGCCGGAACTCCAGT 60.204 61.111 5.05 0.00 35.14 4.00
6493 12135 2.661566 CCAGTCGAAGCACTGCACG 61.662 63.158 3.30 8.83 42.29 5.34
6528 12176 4.022416 CCTCCTCCATGTCTATCTTCTTCG 60.022 50.000 0.00 0.00 0.00 3.79
6918 12570 4.004196 AGAGTTGGTTAGGAAGGTTTCG 57.996 45.455 0.00 0.00 0.00 3.46
6943 12613 4.752594 GGAGGGGGCCCACCAGTA 62.753 72.222 24.36 0.00 44.71 2.74
6959 12629 7.124750 ACAATTTTGATTGGAGATAGGGAAAGG 59.875 37.037 0.00 0.00 35.93 3.11
6988 12658 8.011106 GCTACGTGTTTTAGTAATTAGCAACAA 58.989 33.333 0.00 0.00 0.00 2.83
7006 12679 3.181503 CCTACGTACAATCAGCTACGTGT 60.182 47.826 17.88 9.82 46.37 4.49
7023 12696 2.353803 GGGAGGCAATGCTATACCTACG 60.354 54.545 4.82 0.00 33.55 3.51
7030 12703 2.224967 GGATGAAGGGAGGCAATGCTAT 60.225 50.000 4.82 0.00 0.00 2.97
7046 12735 6.767524 AAACGCTTTTATATTGTGGGATGA 57.232 33.333 0.00 0.00 0.00 2.92
7079 12768 9.584008 AGCTGCCTAATTTATACAGTAGTACTA 57.416 33.333 1.57 0.00 31.96 1.82
7081 12770 7.813627 GGAGCTGCCTAATTTATACAGTAGTAC 59.186 40.741 0.00 0.00 31.96 2.73
7138 12827 6.892658 AGAGATGCTCTAATAACATCGACT 57.107 37.500 0.00 0.00 43.91 4.18
7154 12843 1.801178 GGCGGTTGCTATTAGAGATGC 59.199 52.381 0.00 0.00 42.25 3.91
7155 12844 3.111853 TGGCGGTTGCTATTAGAGATG 57.888 47.619 0.00 0.00 42.25 2.90
7156 12845 3.838244 TTGGCGGTTGCTATTAGAGAT 57.162 42.857 0.00 0.00 42.25 2.75
7157 12846 3.620427 TTTGGCGGTTGCTATTAGAGA 57.380 42.857 0.00 0.00 42.25 3.10
7158 12847 4.695217 TTTTTGGCGGTTGCTATTAGAG 57.305 40.909 0.00 0.00 42.25 2.43
7304 12995 4.926238 AGCTTCGTCTTCAAGACTACAATG 59.074 41.667 15.66 0.00 42.92 2.82
7340 13031 5.328691 CAAATCATCATTTGCCACATTTGC 58.671 37.500 0.00 0.00 41.89 3.68
7369 13060 2.746277 GAAGCCGCCCATCGTGTT 60.746 61.111 0.00 0.00 36.19 3.32
7374 13065 4.918201 CCTCCGAAGCCGCCCATC 62.918 72.222 0.00 0.00 0.00 3.51
7415 14380 2.625823 ATCGTGTTGCCGCCAAAGG 61.626 57.895 0.00 0.00 31.68 3.11
7460 14425 1.464722 CCAAACCCACCTCCCATGT 59.535 57.895 0.00 0.00 0.00 3.21
7463 14428 4.278513 CGCCAAACCCACCTCCCA 62.279 66.667 0.00 0.00 0.00 4.37
7473 14438 1.729131 CATCGTGTTGCCGCCAAAC 60.729 57.895 0.00 0.00 31.68 2.93
7478 14443 4.101790 CACCCATCGTGTTGCCGC 62.102 66.667 0.00 0.00 37.73 6.53
7505 14470 1.031571 TTCATTGCCTCCCATGTCGC 61.032 55.000 0.00 0.00 0.00 5.19
7532 14500 0.109272 GTTGTCGAGAGCATGACCGA 60.109 55.000 0.00 0.00 34.18 4.69
7547 14515 2.288579 TGAAGCGGTGAAGTATCGTTGT 60.289 45.455 0.00 0.00 34.68 3.32
7570 14538 0.592637 TCGGCTTCTTTGTCGACGTA 59.407 50.000 11.62 0.00 39.24 3.57
7586 14554 5.240121 TGGTACAATCATCATCATCATCGG 58.760 41.667 0.00 0.00 31.92 4.18
7610 14578 2.280524 CTCCGGCGTTGTGAACCA 60.281 61.111 6.01 0.00 0.00 3.67
7626 14594 4.305539 TTCATGTGGATCATCAACACCT 57.694 40.909 0.00 0.00 34.09 4.00
7694 14662 3.191371 CCTCTACCAAAAGTGCAATGTCC 59.809 47.826 0.00 0.00 0.00 4.02
7698 14666 3.806949 TCCCTCTACCAAAAGTGCAAT 57.193 42.857 0.00 0.00 0.00 3.56
7714 14682 8.222637 TCATCATCATCATAGTTTGAAATCCCT 58.777 33.333 0.00 0.00 38.03 4.20
7769 14737 9.708092 TCAAATTTGAAATAAAGTGCATCATCA 57.292 25.926 18.45 0.00 33.55 3.07
7794 14762 5.059221 CGGTTTTGCGTTCAAATATCACTTC 59.941 40.000 0.00 0.00 41.37 3.01
7815 14783 2.029964 CCACTGTACAACCGCGGT 59.970 61.111 28.70 28.70 0.00 5.68
7817 14785 2.357034 AGCCACTGTACAACCGCG 60.357 61.111 0.00 0.00 0.00 6.46
7818 14786 0.882927 TTCAGCCACTGTACAACCGC 60.883 55.000 0.00 0.00 32.61 5.68
7822 14790 1.134250 TGCTGTTCAGCCACTGTACAA 60.134 47.619 19.91 0.00 40.23 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.