Multiple sequence alignment - TraesCS2D01G042400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G042400 chr2D 100.000 2530 0 0 2649 5178 15195468 15197997 0.000000e+00 4673.0
1 TraesCS2D01G042400 chr2D 100.000 2356 0 0 1 2356 15192820 15195175 0.000000e+00 4351.0
2 TraesCS2D01G042400 chr2D 76.486 387 69 17 2911 3288 635111317 635110944 1.900000e-44 191.0
3 TraesCS2D01G042400 chr2D 90.741 108 7 2 63 168 85925992 85925886 1.940000e-29 141.0
4 TraesCS2D01G042400 chr2D 82.243 107 16 2 3312 3415 64593187 64593293 7.140000e-14 89.8
5 TraesCS2D01G042400 chr2A 95.578 2058 77 7 145 2194 17248835 17250886 0.000000e+00 3284.0
6 TraesCS2D01G042400 chr2A 94.124 1736 84 14 2649 4371 17251002 17252732 0.000000e+00 2625.0
7 TraesCS2D01G042400 chr2A 79.893 373 59 12 1041 1406 17300132 17300495 5.140000e-65 259.0
8 TraesCS2D01G042400 chr2A 79.474 380 60 14 1038 1406 20365464 20365836 2.390000e-63 254.0
9 TraesCS2D01G042400 chr2A 83.267 251 26 4 4568 4802 17298323 17298573 3.140000e-52 217.0
10 TraesCS2D01G042400 chr2A 92.715 151 3 2 2206 2356 17250858 17251000 1.460000e-50 211.0
11 TraesCS2D01G042400 chr2B 96.408 1921 62 2 145 2062 27085256 27087172 0.000000e+00 3158.0
12 TraesCS2D01G042400 chr2B 91.601 2274 110 36 2649 4881 27087573 27089806 0.000000e+00 3066.0
13 TraesCS2D01G042400 chr2B 90.698 301 11 13 2048 2348 27087280 27087563 8.130000e-103 385.0
14 TraesCS2D01G042400 chr2B 74.426 610 117 31 1162 1748 27250120 27250713 5.220000e-55 226.0
15 TraesCS2D01G042400 chr2B 73.614 451 79 31 2855 3288 779122896 779122469 2.510000e-28 137.0
16 TraesCS2D01G042400 chr2B 83.478 115 16 3 185 298 379204754 379204642 2.550000e-18 104.0
17 TraesCS2D01G042400 chr2B 82.857 105 16 2 3310 3412 158143188 158143084 5.520000e-15 93.5
18 TraesCS2D01G042400 chr6B 75.137 728 141 32 1038 1748 548948676 548949380 6.510000e-79 305.0
19 TraesCS2D01G042400 chr6B 75.000 728 142 32 1038 1748 549029188 549029892 3.030000e-77 300.0
20 TraesCS2D01G042400 chr6B 77.301 163 25 10 4503 4656 120668234 120668393 9.240000e-13 86.1
21 TraesCS2D01G042400 chr7B 74.553 727 141 34 1038 1746 69912890 69913590 1.420000e-70 278.0
22 TraesCS2D01G042400 chr7B 74.486 729 138 36 1038 1746 70069273 70069973 6.610000e-69 272.0
23 TraesCS2D01G042400 chr7B 97.872 47 1 0 185 231 38588949 38588903 1.200000e-11 82.4
24 TraesCS2D01G042400 chr7B 87.692 65 4 1 179 239 663704609 663704545 7.190000e-09 73.1
25 TraesCS2D01G042400 chr5D 98.851 87 1 0 62 148 373214571 373214657 6.940000e-34 156.0
26 TraesCS2D01G042400 chr5D 93.939 99 4 2 61 159 45483692 45483788 1.160000e-31 148.0
27 TraesCS2D01G042400 chr5D 94.444 90 4 1 60 148 382868407 382868496 2.510000e-28 137.0
28 TraesCS2D01G042400 chr1A 97.778 90 2 0 59 148 91047546 91047457 6.940000e-34 156.0
29 TraesCS2D01G042400 chr1A 82.171 129 19 3 3182 3307 449805638 449805511 1.970000e-19 108.0
30 TraesCS2D01G042400 chr1A 74.206 252 50 11 4503 4740 547387606 547387356 1.990000e-14 91.6
31 TraesCS2D01G042400 chr1A 93.478 46 2 1 3371 3415 273523789 273523744 3.350000e-07 67.6
32 TraesCS2D01G042400 chr5A 93.939 99 5 1 60 158 328804714 328804811 1.160000e-31 148.0
33 TraesCS2D01G042400 chr5A 73.518 253 50 14 4503 4740 680854762 680855012 4.300000e-11 80.5
34 TraesCS2D01G042400 chr5A 80.556 108 15 6 3310 3415 35988523 35988420 1.550000e-10 78.7
35 TraesCS2D01G042400 chr5A 83.750 80 11 2 185 263 683963263 683963185 2.000000e-09 75.0
36 TraesCS2D01G042400 chr1D 77.907 258 40 12 3029 3278 218325799 218325551 1.500000e-30 145.0
37 TraesCS2D01G042400 chr1D 93.151 73 5 0 3463 3535 464799794 464799722 1.970000e-19 108.0
38 TraesCS2D01G042400 chr6A 91.509 106 5 2 63 168 557970132 557970031 5.400000e-30 143.0
39 TraesCS2D01G042400 chr6A 88.333 120 8 6 63 180 594831694 594831579 6.990000e-29 139.0
40 TraesCS2D01G042400 chr6A 73.600 250 53 11 4503 4740 539621157 539621405 3.320000e-12 84.2
41 TraesCS2D01G042400 chr6A 77.477 111 21 4 3306 3413 603370591 603370482 4.330000e-06 63.9
42 TraesCS2D01G042400 chr4A 91.346 104 7 2 63 165 69329939 69329837 1.940000e-29 141.0
43 TraesCS2D01G042400 chr4A 92.754 69 5 0 3463 3531 24503986 24504054 3.300000e-17 100.0
44 TraesCS2D01G042400 chr4A 84.000 100 5 6 3440 3532 59675004 59674909 9.240000e-13 86.1
45 TraesCS2D01G042400 chr1B 76.357 258 39 12 3029 3278 312152179 312151936 9.110000e-23 119.0
46 TraesCS2D01G042400 chr6D 76.000 250 44 10 3029 3269 111020617 111020375 1.180000e-21 115.0
47 TraesCS2D01G042400 chr3B 92.958 71 3 1 3463 3531 520448037 520447967 9.170000e-18 102.0
48 TraesCS2D01G042400 chr3B 83.636 110 11 6 3077 3180 823268062 823267954 4.270000e-16 97.1
49 TraesCS2D01G042400 chr3B 81.579 76 12 2 3185 3258 498350488 498350413 1.560000e-05 62.1
50 TraesCS2D01G042400 chr7A 84.762 105 11 5 3312 3413 126917043 126917145 3.300000e-17 100.0
51 TraesCS2D01G042400 chr7A 89.474 76 6 1 3458 3531 68881097 68881172 1.530000e-15 95.3
52 TraesCS2D01G042400 chr7A 80.531 113 17 3 3302 3409 243653433 243653545 1.200000e-11 82.4
53 TraesCS2D01G042400 chr7D 91.667 72 5 1 3463 3533 46702663 46702734 1.190000e-16 99.0
54 TraesCS2D01G042400 chr7D 88.462 78 7 2 3463 3540 236822680 236822605 5.520000e-15 93.5
55 TraesCS2D01G042400 chr5B 79.832 119 21 3 185 302 491096698 491096814 3.320000e-12 84.2
56 TraesCS2D01G042400 chr5B 72.941 255 47 16 4503 4740 456198352 456198103 9.300000e-08 69.4
57 TraesCS2D01G042400 chr3D 87.879 66 8 0 2264 2329 111759497 111759562 1.550000e-10 78.7
58 TraesCS2D01G042400 chr3A 75.882 170 29 10 4496 4656 8157058 8157224 5.560000e-10 76.8
59 TraesCS2D01G042400 chr3A 73.333 255 46 16 4503 4740 114722203 114721954 2.000000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G042400 chr2D 15192820 15197997 5177 False 4512 4673 100.000000 1 5178 2 chr2D.!!$F2 5177
1 TraesCS2D01G042400 chr2A 17248835 17252732 3897 False 2040 3284 94.139000 145 4371 3 chr2A.!!$F2 4226
2 TraesCS2D01G042400 chr2A 17298323 17300495 2172 False 238 259 81.580000 1041 4802 2 chr2A.!!$F3 3761
3 TraesCS2D01G042400 chr2B 27085256 27089806 4550 False 2203 3158 92.902333 145 4881 3 chr2B.!!$F2 4736
4 TraesCS2D01G042400 chr2B 27250120 27250713 593 False 226 226 74.426000 1162 1748 1 chr2B.!!$F1 586
5 TraesCS2D01G042400 chr6B 548948676 548949380 704 False 305 305 75.137000 1038 1748 1 chr6B.!!$F2 710
6 TraesCS2D01G042400 chr6B 549029188 549029892 704 False 300 300 75.000000 1038 1748 1 chr6B.!!$F3 710
7 TraesCS2D01G042400 chr7B 69912890 69913590 700 False 278 278 74.553000 1038 1746 1 chr7B.!!$F1 708
8 TraesCS2D01G042400 chr7B 70069273 70069973 700 False 272 272 74.486000 1038 1746 1 chr7B.!!$F2 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.179081 GCAATGTACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.0 4.79 F
1052 1822 0.249120 CGACCTGAGCACCATGGTTA 59.751 55.000 16.84 0.93 32.3 2.85 F
1330 2113 0.535780 TGAACTGCCTGCTCTGGTTG 60.536 55.000 0.00 0.00 0.0 3.77 F
1364 2147 0.540365 CATTGTCCACCCCAACAGCT 60.540 55.000 0.00 0.00 0.0 4.24 F
1366 2149 0.847373 TTGTCCACCCCAACAGCTTA 59.153 50.000 0.00 0.00 0.0 3.09 F
1562 2357 1.153168 CCTAACCCATGCCCGTCTG 60.153 63.158 0.00 0.00 0.0 3.51 F
1563 2358 1.602237 CTAACCCATGCCCGTCTGT 59.398 57.895 0.00 0.00 0.0 3.41 F
1568 2367 2.125713 CATGCCCGTCTGTGCGTA 60.126 61.111 0.00 0.00 0.0 4.42 F
2139 3062 2.593026 AGGCAATTTCCGACCTTTGAA 58.407 42.857 0.00 0.00 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 2358 0.038983 TCTTTAGCTGCACGTACGCA 60.039 50.000 16.72 5.12 40.32 5.24 R
2277 3200 0.324943 ATGGAGTGACCCCGAACAAG 59.675 55.000 0.00 0.00 38.00 3.16 R
2278 3201 0.768622 AATGGAGTGACCCCGAACAA 59.231 50.000 0.00 0.00 38.00 2.83 R
2973 3905 6.939132 AGAGAAGAATTAGTGGCATTGATG 57.061 37.500 0.00 0.00 0.00 3.07 R
3319 4253 8.446273 CAAGGAAGAATATATTAGCGACATTGG 58.554 37.037 0.00 0.00 0.00 3.16 R
3468 4402 4.602340 ACACTCATATTATGGGACGGAC 57.398 45.455 10.56 0.00 34.00 4.79 R
3627 4561 6.980397 GCAGGCAGTACAATATTATTGCTTTT 59.020 34.615 14.88 0.47 35.57 2.27 R
3822 4756 3.902881 AATCGATGCAGAGGAGTTCTT 57.097 42.857 0.00 0.00 32.41 2.52 R
4199 5136 1.204704 CAAGCGTGGAGTATGAGGACA 59.795 52.381 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.485976 AGAGACTTTTGCACTAATCTTGTATC 57.514 34.615 0.00 0.00 0.00 2.24
27 28 8.097038 AGAGACTTTTGCACTAATCTTGTATCA 58.903 33.333 0.00 0.00 0.00 2.15
29 30 9.236006 AGACTTTTGCACTAATCTTGTATCATT 57.764 29.630 0.00 0.00 0.00 2.57
72 73 1.586422 CATGCAATGTACTCCCTCCG 58.414 55.000 0.00 0.00 40.20 4.63
74 75 0.535335 TGCAATGTACTCCCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
75 76 0.179081 GCAATGTACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
77 78 1.553248 CAATGTACTCCCTCCGTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
80 81 3.104519 TGTACTCCCTCCGTCCAATAA 57.895 47.619 0.00 0.00 0.00 1.40
81 82 3.649843 TGTACTCCCTCCGTCCAATAAT 58.350 45.455 0.00 0.00 0.00 1.28
82 83 4.806892 TGTACTCCCTCCGTCCAATAATA 58.193 43.478 0.00 0.00 0.00 0.98
84 85 6.554784 TGTACTCCCTCCGTCCAATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
86 87 6.607004 ACTCCCTCCGTCCAATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
87 88 6.320518 ACTCCCTCCGTCCAATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
88 89 6.437793 ACTCCCTCCGTCCAATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
90 91 5.103000 CCTCCGTCCAATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
92 93 6.092955 TCCGTCCAATAATATAAGAGCGTT 57.907 37.500 0.00 0.00 0.00 4.84
93 94 6.518493 TCCGTCCAATAATATAAGAGCGTTT 58.482 36.000 0.00 0.00 0.00 3.60
94 95 6.987992 TCCGTCCAATAATATAAGAGCGTTTT 59.012 34.615 0.00 0.00 0.00 2.43
95 96 7.496591 TCCGTCCAATAATATAAGAGCGTTTTT 59.503 33.333 0.00 0.00 0.00 1.94
99 100 9.168451 TCCAATAATATAAGAGCGTTTTTGACA 57.832 29.630 0.00 0.00 0.00 3.58
101 102 9.988350 CAATAATATAAGAGCGTTTTTGACACT 57.012 29.630 0.00 0.00 0.00 3.55
104 105 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
105 106 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
107 108 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
108 109 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
109 110 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
138 139 8.446599 AAAAACACTCTTATATTATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
139 140 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
140 141 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
141 142 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
142 143 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
143 144 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
264 265 2.287915 CACTTGAGCCGGTATAACATGC 59.712 50.000 1.90 0.00 0.00 4.06
348 349 9.378551 AGTTGCGTAGAAAACAATATAATCTCA 57.621 29.630 0.00 0.00 0.00 3.27
462 464 2.126734 CCCTTTGAAAGCGCGCAG 60.127 61.111 35.10 20.23 0.00 5.18
717 719 6.071672 CCAACCATGTATTGTGGATGTGTTTA 60.072 38.462 0.00 0.00 37.70 2.01
753 755 3.358707 GTTTGGCGCGCAGGGTTA 61.359 61.111 34.42 8.49 44.71 2.85
807 809 1.979693 GGAGAGGAGGTGCGTGACT 60.980 63.158 0.00 0.00 0.00 3.41
931 933 4.545823 AACCGTTTAACCATGCATATCG 57.454 40.909 0.00 0.00 0.00 2.92
1052 1822 0.249120 CGACCTGAGCACCATGGTTA 59.751 55.000 16.84 0.93 32.30 2.85
1276 2059 1.305201 GCAAGAACAAGGACGTGGAA 58.695 50.000 0.00 0.00 0.00 3.53
1291 2074 1.375523 GGAACAGTTCACGCCGGAT 60.376 57.895 15.36 0.00 0.00 4.18
1330 2113 0.535780 TGAACTGCCTGCTCTGGTTG 60.536 55.000 0.00 0.00 0.00 3.77
1348 2131 0.912487 TGTTCTACGGCCTCCCCATT 60.912 55.000 0.00 0.00 0.00 3.16
1364 2147 0.540365 CATTGTCCACCCCAACAGCT 60.540 55.000 0.00 0.00 0.00 4.24
1366 2149 0.847373 TTGTCCACCCCAACAGCTTA 59.153 50.000 0.00 0.00 0.00 3.09
1423 2206 4.537751 TCGAGACAATCTACCTCTCCATT 58.462 43.478 0.00 0.00 0.00 3.16
1508 2291 4.439563 CCCGGAAGAACAATTAATTTCCCG 60.440 45.833 0.73 9.21 35.07 5.14
1561 2356 2.375345 CCCTAACCCATGCCCGTCT 61.375 63.158 0.00 0.00 0.00 4.18
1562 2357 1.153168 CCTAACCCATGCCCGTCTG 60.153 63.158 0.00 0.00 0.00 3.51
1563 2358 1.602237 CTAACCCATGCCCGTCTGT 59.398 57.895 0.00 0.00 0.00 3.41
1568 2367 2.125713 CATGCCCGTCTGTGCGTA 60.126 61.111 0.00 0.00 0.00 4.42
1593 2392 4.501198 GTGCAGCTAAAGATACTTCTCGTC 59.499 45.833 0.00 0.00 0.00 4.20
2027 2827 8.800370 TTTCTACATCAATAGGTAATGCAACA 57.200 30.769 0.00 0.00 0.00 3.33
2139 3062 2.593026 AGGCAATTTCCGACCTTTGAA 58.407 42.857 0.00 0.00 0.00 2.69
2164 3087 8.738199 ATCTTTTATTATGCAGAATTGATGCG 57.262 30.769 12.49 0.00 46.87 4.73
2225 3148 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2226 3149 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2227 3150 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2228 3151 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2229 3152 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2230 3153 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2231 3154 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2232 3155 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2233 3156 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2234 3157 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
2235 3158 5.462240 TCTCTCTCTCTCTCTCTCTCTCAT 58.538 45.833 0.00 0.00 0.00 2.90
2236 3159 5.901853 TCTCTCTCTCTCTCTCTCTCTCATT 59.098 44.000 0.00 0.00 0.00 2.57
2240 3163 6.115446 TCTCTCTCTCTCTCTCTCATTTGTC 58.885 44.000 0.00 0.00 0.00 3.18
2268 3191 6.463360 TCATGGCTTCTTGGGTTAAATTTTC 58.537 36.000 0.00 0.00 0.00 2.29
2273 3196 6.156519 GCTTCTTGGGTTAAATTTTCGACAT 58.843 36.000 0.00 0.00 0.00 3.06
2274 3197 6.089417 GCTTCTTGGGTTAAATTTTCGACATG 59.911 38.462 0.00 0.00 0.00 3.21
2275 3198 5.465935 TCTTGGGTTAAATTTTCGACATGC 58.534 37.500 0.00 0.00 0.00 4.06
2276 3199 4.181309 TGGGTTAAATTTTCGACATGCC 57.819 40.909 0.00 0.00 0.00 4.40
2277 3200 3.056465 TGGGTTAAATTTTCGACATGCCC 60.056 43.478 0.00 0.00 0.00 5.36
2278 3201 3.194755 GGGTTAAATTTTCGACATGCCCT 59.805 43.478 0.00 0.00 0.00 5.19
2678 3609 5.593502 TGCATTTCTTTTGCCATTTTCCTTT 59.406 32.000 0.00 0.00 39.39 3.11
2768 3700 9.163899 TGTGTGTTTAAATTGTTGTAGAGTACA 57.836 29.630 0.00 0.00 36.79 2.90
2770 3702 8.832521 TGTGTTTAAATTGTTGTAGAGTACAGG 58.167 33.333 0.00 0.00 40.24 4.00
2973 3905 7.828508 TTTTCCTTCTTCCTTTAAGGGTAAC 57.171 36.000 11.50 0.00 42.20 2.50
3239 4173 7.971183 TGTGTGTAAAATACATTAGAGTGCA 57.029 32.000 0.00 0.00 41.34 4.57
3468 4402 4.762765 ACGCTTAGGGTATCATCTACTCTG 59.237 45.833 0.00 0.00 29.82 3.35
3519 4453 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
3822 4756 0.541764 GTCCCAAACCCTGCCAATCA 60.542 55.000 0.00 0.00 0.00 2.57
3926 4861 3.914426 TCTTCCAGCTGATCCTTTACC 57.086 47.619 17.39 0.00 0.00 2.85
4036 4971 3.248446 TTTCCCTTCCCTCGCCGTG 62.248 63.158 0.00 0.00 0.00 4.94
4075 5010 2.159819 CTGCCGTCTGTGGTGCTAGT 62.160 60.000 0.00 0.00 0.00 2.57
4196 5133 1.921243 TCGCAGATTATGACACCACG 58.079 50.000 0.00 0.00 0.00 4.94
4197 5134 0.301687 CGCAGATTATGACACCACGC 59.698 55.000 0.00 0.00 0.00 5.34
4198 5135 1.656652 GCAGATTATGACACCACGCT 58.343 50.000 0.00 0.00 0.00 5.07
4199 5136 2.009774 GCAGATTATGACACCACGCTT 58.990 47.619 0.00 0.00 0.00 4.68
4200 5137 2.223112 GCAGATTATGACACCACGCTTG 60.223 50.000 0.00 0.00 0.00 4.01
4201 5138 3.002791 CAGATTATGACACCACGCTTGT 58.997 45.455 0.00 0.00 0.00 3.16
4202 5139 3.062639 CAGATTATGACACCACGCTTGTC 59.937 47.826 5.01 5.01 43.22 3.18
4203 5140 1.803334 TTATGACACCACGCTTGTCC 58.197 50.000 8.66 0.00 42.40 4.02
4204 5141 0.973632 TATGACACCACGCTTGTCCT 59.026 50.000 8.66 2.93 42.40 3.85
4205 5142 0.320771 ATGACACCACGCTTGTCCTC 60.321 55.000 8.66 0.00 42.40 3.71
4206 5143 1.069090 GACACCACGCTTGTCCTCA 59.931 57.895 1.16 0.00 37.93 3.86
4207 5144 0.320771 GACACCACGCTTGTCCTCAT 60.321 55.000 1.16 0.00 37.93 2.90
4208 5145 0.973632 ACACCACGCTTGTCCTCATA 59.026 50.000 0.00 0.00 0.00 2.15
4209 5146 1.337823 ACACCACGCTTGTCCTCATAC 60.338 52.381 0.00 0.00 0.00 2.39
4210 5147 1.066858 CACCACGCTTGTCCTCATACT 60.067 52.381 0.00 0.00 0.00 2.12
4211 5148 1.204941 ACCACGCTTGTCCTCATACTC 59.795 52.381 0.00 0.00 0.00 2.59
4212 5149 1.471676 CCACGCTTGTCCTCATACTCC 60.472 57.143 0.00 0.00 0.00 3.85
4213 5150 1.204704 CACGCTTGTCCTCATACTCCA 59.795 52.381 0.00 0.00 0.00 3.86
4214 5151 1.204941 ACGCTTGTCCTCATACTCCAC 59.795 52.381 0.00 0.00 0.00 4.02
4222 5159 1.478510 CCTCATACTCCACGCTTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
4233 5170 3.367395 CCACGCTTGTCTTCATACTCTCA 60.367 47.826 0.00 0.00 0.00 3.27
4276 5213 1.686355 TGGATTTGTTGAACCGCAGT 58.314 45.000 0.00 0.00 0.00 4.40
4352 5316 2.004733 ACTTTATTACCGGTTCGCTGC 58.995 47.619 15.04 0.00 0.00 5.25
4413 5387 6.976925 GCTTTCAGCTTAACATATGCATCTTT 59.023 34.615 0.19 0.00 38.45 2.52
4414 5388 7.490402 GCTTTCAGCTTAACATATGCATCTTTT 59.510 33.333 0.19 0.00 38.45 2.27
4415 5389 8.692110 TTTCAGCTTAACATATGCATCTTTTG 57.308 30.769 0.19 0.00 0.00 2.44
4416 5390 6.798482 TCAGCTTAACATATGCATCTTTTGG 58.202 36.000 0.19 0.00 0.00 3.28
4417 5391 5.981315 CAGCTTAACATATGCATCTTTTGGG 59.019 40.000 0.19 0.00 0.00 4.12
4418 5392 5.069516 AGCTTAACATATGCATCTTTTGGGG 59.930 40.000 0.19 0.00 0.00 4.96
4419 5393 5.739935 GCTTAACATATGCATCTTTTGGGGG 60.740 44.000 0.19 0.00 0.00 5.40
4482 5457 7.282200 TGTTAATTGTTCGTTACATACACGTG 58.718 34.615 15.48 15.48 38.81 4.49
4540 5520 1.209127 CACATTTGGGGTTCGCGTC 59.791 57.895 5.77 0.09 0.00 5.19
4543 5523 4.992511 TTTGGGGTTCGCGTCCCG 62.993 66.667 26.11 0.00 46.03 5.14
4559 5539 3.001330 CGTCCCGCTGAATTATCACTTTC 59.999 47.826 0.00 0.00 0.00 2.62
4560 5540 3.938963 GTCCCGCTGAATTATCACTTTCA 59.061 43.478 0.00 0.00 0.00 2.69
4615 5596 7.639113 TTTTGTCACTAGAAACTCCACATTT 57.361 32.000 0.00 0.00 0.00 2.32
4634 5616 7.920682 CCACATTTAATAATGGCCAGTTTAGAC 59.079 37.037 12.70 0.00 44.42 2.59
4643 5625 3.565063 TGGCCAGTTTAGACGGTTTAAAC 59.435 43.478 20.58 20.58 39.92 2.01
4656 5638 6.203338 AGACGGTTTAAACACGTTTATGACAT 59.797 34.615 25.26 8.62 36.46 3.06
4660 5642 6.584563 GGTTTAAACACGTTTATGACATGCAT 59.415 34.615 19.57 0.00 41.08 3.96
4670 5652 0.110104 TGACATGCATGACCCACACA 59.890 50.000 32.75 15.84 0.00 3.72
4694 5682 1.282875 GTGGCGGCAAAGTCAACTC 59.717 57.895 15.50 0.00 0.00 3.01
4696 5684 2.556287 GCGGCAAAGTCAACTCCG 59.444 61.111 0.00 4.82 42.68 4.63
4710 5698 4.514066 GTCAACTCCGGTTATTTTGACTGT 59.486 41.667 19.66 0.00 41.78 3.55
4731 5719 5.404946 TGTTAAGTAGACCGTTATGACAGC 58.595 41.667 0.00 0.00 0.00 4.40
4732 5720 5.184479 TGTTAAGTAGACCGTTATGACAGCT 59.816 40.000 0.00 0.00 0.00 4.24
4784 5782 2.570181 GGGACACAGCATGCAAGC 59.430 61.111 21.98 5.62 42.53 4.01
4787 5785 1.211969 GACACAGCATGCAAGCAGG 59.788 57.895 21.98 10.22 42.53 4.85
4803 5801 2.511600 GGACCCGAACAGGATGCG 60.512 66.667 0.00 0.00 45.00 4.73
4804 5802 2.511600 GACCCGAACAGGATGCGG 60.512 66.667 0.00 0.00 45.00 5.69
4855 5853 1.003355 CCCGAGCAACTGTCCACAT 60.003 57.895 0.00 0.00 0.00 3.21
4860 5858 2.418609 CGAGCAACTGTCCACATCCATA 60.419 50.000 0.00 0.00 0.00 2.74
4861 5859 3.742327 CGAGCAACTGTCCACATCCATAT 60.742 47.826 0.00 0.00 0.00 1.78
4871 5869 2.341257 CACATCCATATAGCTCACGCC 58.659 52.381 0.00 0.00 36.60 5.68
4873 5871 2.232452 ACATCCATATAGCTCACGCCTC 59.768 50.000 0.00 0.00 36.60 4.70
4877 5875 2.614779 CATATAGCTCACGCCTCCATG 58.385 52.381 0.00 0.00 36.60 3.66
4878 5876 1.995376 TATAGCTCACGCCTCCATGA 58.005 50.000 0.00 0.00 36.60 3.07
4879 5877 1.346062 ATAGCTCACGCCTCCATGAT 58.654 50.000 0.00 0.00 36.60 2.45
4880 5878 0.390492 TAGCTCACGCCTCCATGATG 59.610 55.000 0.00 0.00 36.60 3.07
4881 5879 2.541120 GCTCACGCCTCCATGATGC 61.541 63.158 0.00 0.00 0.00 3.91
4882 5880 1.153309 CTCACGCCTCCATGATGCA 60.153 57.895 0.00 0.00 0.00 3.96
4883 5881 1.434622 CTCACGCCTCCATGATGCAC 61.435 60.000 0.00 0.00 0.00 4.57
4884 5882 1.746239 CACGCCTCCATGATGCACA 60.746 57.895 0.00 0.00 0.00 4.57
4885 5883 1.099295 CACGCCTCCATGATGCACAT 61.099 55.000 0.00 0.00 40.17 3.21
4916 5914 1.855360 GTGAGTTGCACGATAGCTAGC 59.145 52.381 6.62 6.62 37.83 3.42
4917 5915 1.202417 TGAGTTGCACGATAGCTAGCC 60.202 52.381 12.13 0.00 42.67 3.93
4918 5916 1.067821 GAGTTGCACGATAGCTAGCCT 59.932 52.381 12.13 0.00 42.67 4.58
4919 5917 1.202463 AGTTGCACGATAGCTAGCCTG 60.202 52.381 12.13 3.45 42.67 4.85
4920 5918 0.104855 TTGCACGATAGCTAGCCTGG 59.895 55.000 12.13 3.12 42.67 4.45
4921 5919 0.755327 TGCACGATAGCTAGCCTGGA 60.755 55.000 12.13 0.41 42.67 3.86
4922 5920 0.038709 GCACGATAGCTAGCCTGGAG 60.039 60.000 12.13 2.08 42.67 3.86
4923 5921 0.600557 CACGATAGCTAGCCTGGAGG 59.399 60.000 12.13 0.00 42.67 4.30
4924 5922 0.186386 ACGATAGCTAGCCTGGAGGT 59.814 55.000 12.13 0.00 42.67 3.85
4925 5923 0.600557 CGATAGCTAGCCTGGAGGTG 59.399 60.000 12.13 0.00 37.57 4.00
4926 5924 0.320050 GATAGCTAGCCTGGAGGTGC 59.680 60.000 12.13 0.00 37.57 5.01
4927 5925 0.399091 ATAGCTAGCCTGGAGGTGCA 60.399 55.000 12.13 0.00 37.57 4.57
4928 5926 1.330655 TAGCTAGCCTGGAGGTGCAC 61.331 60.000 12.13 8.80 37.57 4.57
4929 5927 2.185350 CTAGCCTGGAGGTGCACG 59.815 66.667 11.45 0.00 37.57 5.34
4930 5928 3.376935 CTAGCCTGGAGGTGCACGG 62.377 68.421 11.45 7.07 37.57 4.94
4942 5940 4.759096 GCACGGCGGATGCAACAC 62.759 66.667 16.37 0.00 45.35 3.32
4943 5941 3.049674 CACGGCGGATGCAACACT 61.050 61.111 13.24 0.00 45.35 3.55
4944 5942 1.739929 CACGGCGGATGCAACACTA 60.740 57.895 13.24 0.00 45.35 2.74
4945 5943 1.447838 ACGGCGGATGCAACACTAG 60.448 57.895 13.24 0.00 45.35 2.57
4946 5944 2.173669 CGGCGGATGCAACACTAGG 61.174 63.158 0.00 0.00 45.35 3.02
4947 5945 2.472909 GGCGGATGCAACACTAGGC 61.473 63.158 0.00 0.00 45.35 3.93
4948 5946 2.472909 GCGGATGCAACACTAGGCC 61.473 63.158 0.00 0.00 42.15 5.19
4949 5947 1.078497 CGGATGCAACACTAGGCCA 60.078 57.895 5.01 0.00 0.00 5.36
4950 5948 1.369091 CGGATGCAACACTAGGCCAC 61.369 60.000 5.01 0.00 0.00 5.01
4951 5949 1.369091 GGATGCAACACTAGGCCACG 61.369 60.000 5.01 0.00 0.00 4.94
4952 5950 1.982073 GATGCAACACTAGGCCACGC 61.982 60.000 5.01 0.00 0.00 5.34
4953 5951 2.668212 GCAACACTAGGCCACGCA 60.668 61.111 5.01 0.00 0.00 5.24
4954 5952 2.040544 GCAACACTAGGCCACGCAT 61.041 57.895 5.01 0.00 0.00 4.73
4955 5953 1.796151 CAACACTAGGCCACGCATG 59.204 57.895 5.01 0.00 0.00 4.06
4956 5954 2.040544 AACACTAGGCCACGCATGC 61.041 57.895 7.91 7.91 0.00 4.06
4963 5961 2.717485 GCCACGCATGCCATAGTG 59.283 61.111 13.15 13.89 0.00 2.74
4964 5962 3.424300 CCACGCATGCCATAGTGG 58.576 61.111 22.67 22.67 46.52 4.00
4965 5963 1.451927 CCACGCATGCCATAGTGGT 60.452 57.895 25.74 9.74 46.52 4.16
4966 5964 1.031571 CCACGCATGCCATAGTGGTT 61.032 55.000 25.74 0.00 46.52 3.67
4967 5965 0.099259 CACGCATGCCATAGTGGTTG 59.901 55.000 13.15 0.00 40.46 3.77
4968 5966 0.035534 ACGCATGCCATAGTGGTTGA 60.036 50.000 13.15 0.00 40.46 3.18
4969 5967 1.093972 CGCATGCCATAGTGGTTGAA 58.906 50.000 13.15 0.00 40.46 2.69
4970 5968 1.472082 CGCATGCCATAGTGGTTGAAA 59.528 47.619 13.15 0.00 40.46 2.69
4971 5969 2.099592 CGCATGCCATAGTGGTTGAAAT 59.900 45.455 13.15 0.00 40.46 2.17
4972 5970 3.709987 GCATGCCATAGTGGTTGAAATC 58.290 45.455 6.36 0.00 40.46 2.17
4973 5971 3.130869 GCATGCCATAGTGGTTGAAATCA 59.869 43.478 6.36 0.00 40.46 2.57
4974 5972 4.735578 GCATGCCATAGTGGTTGAAATCAG 60.736 45.833 6.36 0.00 40.46 2.90
4975 5973 3.355378 TGCCATAGTGGTTGAAATCAGG 58.645 45.455 0.00 0.00 40.46 3.86
4976 5974 3.010027 TGCCATAGTGGTTGAAATCAGGA 59.990 43.478 0.00 0.00 40.46 3.86
4977 5975 3.629398 GCCATAGTGGTTGAAATCAGGAG 59.371 47.826 0.00 0.00 40.46 3.69
4978 5976 4.626287 GCCATAGTGGTTGAAATCAGGAGA 60.626 45.833 0.00 0.00 40.46 3.71
4979 5977 4.878397 CCATAGTGGTTGAAATCAGGAGAC 59.122 45.833 0.00 0.00 31.35 3.36
4980 5978 3.045601 AGTGGTTGAAATCAGGAGACG 57.954 47.619 0.00 0.00 0.00 4.18
4981 5979 2.368875 AGTGGTTGAAATCAGGAGACGT 59.631 45.455 0.00 0.00 0.00 4.34
4982 5980 3.139077 GTGGTTGAAATCAGGAGACGTT 58.861 45.455 0.00 0.00 0.00 3.99
4983 5981 3.058914 GTGGTTGAAATCAGGAGACGTTG 60.059 47.826 0.00 0.00 0.00 4.10
4984 5982 2.484264 GGTTGAAATCAGGAGACGTTGG 59.516 50.000 0.00 0.00 0.00 3.77
4985 5983 3.139077 GTTGAAATCAGGAGACGTTGGT 58.861 45.455 0.00 0.00 0.00 3.67
4986 5984 2.766313 TGAAATCAGGAGACGTTGGTG 58.234 47.619 0.00 0.00 0.00 4.17
4987 5985 2.104111 TGAAATCAGGAGACGTTGGTGT 59.896 45.455 0.00 0.00 0.00 4.16
4988 5986 2.457366 AATCAGGAGACGTTGGTGTC 57.543 50.000 0.00 0.00 39.21 3.67
4989 5987 0.243907 ATCAGGAGACGTTGGTGTCG 59.756 55.000 0.00 0.00 43.70 4.35
4990 5988 0.820482 TCAGGAGACGTTGGTGTCGA 60.820 55.000 0.00 0.00 43.70 4.20
4991 5989 0.663568 CAGGAGACGTTGGTGTCGAC 60.664 60.000 9.11 9.11 43.70 4.20
4997 5995 2.338984 GTTGGTGTCGACGAGCCT 59.661 61.111 19.54 0.00 0.00 4.58
4998 5996 2.022129 GTTGGTGTCGACGAGCCTG 61.022 63.158 19.54 0.00 0.00 4.85
4999 5997 3.858868 TTGGTGTCGACGAGCCTGC 62.859 63.158 19.54 0.00 0.00 4.85
5000 5998 4.357947 GGTGTCGACGAGCCTGCA 62.358 66.667 11.62 0.00 0.00 4.41
5001 5999 2.807045 GTGTCGACGAGCCTGCAG 60.807 66.667 11.62 6.78 0.00 4.41
5002 6000 3.295273 TGTCGACGAGCCTGCAGT 61.295 61.111 13.81 0.00 0.00 4.40
5003 6001 2.807045 GTCGACGAGCCTGCAGTG 60.807 66.667 13.81 5.37 0.00 3.66
5004 6002 4.056125 TCGACGAGCCTGCAGTGG 62.056 66.667 13.81 0.00 0.00 4.00
5005 6003 4.056125 CGACGAGCCTGCAGTGGA 62.056 66.667 13.81 0.00 0.00 4.02
5006 6004 2.581354 GACGAGCCTGCAGTGGAT 59.419 61.111 13.81 0.00 0.00 3.41
5007 6005 1.520342 GACGAGCCTGCAGTGGATC 60.520 63.158 13.81 6.57 38.99 3.36
5008 6006 2.230994 GACGAGCCTGCAGTGGATCA 62.231 60.000 13.81 0.00 42.18 2.92
5009 6007 1.812922 CGAGCCTGCAGTGGATCAC 60.813 63.158 13.81 0.00 42.18 3.06
5010 6008 1.601171 GAGCCTGCAGTGGATCACT 59.399 57.895 13.81 0.00 46.51 3.41
5017 6015 3.817508 AGTGGATCACTGGCTGCT 58.182 55.556 0.00 0.00 43.63 4.24
5018 6016 1.298993 AGTGGATCACTGGCTGCTG 59.701 57.895 0.00 0.00 43.63 4.41
5019 6017 1.002868 GTGGATCACTGGCTGCTGT 60.003 57.895 0.00 0.00 0.00 4.40
5020 6018 0.250234 GTGGATCACTGGCTGCTGTA 59.750 55.000 0.00 0.00 0.00 2.74
5021 6019 0.538584 TGGATCACTGGCTGCTGTAG 59.461 55.000 0.00 0.00 0.00 2.74
5030 6028 2.358615 CTGCTGTAGCCGCCACAA 60.359 61.111 0.80 0.00 41.18 3.33
5031 6029 1.746615 CTGCTGTAGCCGCCACAAT 60.747 57.895 0.80 0.00 41.18 2.71
5032 6030 0.461870 CTGCTGTAGCCGCCACAATA 60.462 55.000 0.80 0.00 41.18 1.90
5033 6031 0.461870 TGCTGTAGCCGCCACAATAG 60.462 55.000 0.80 0.00 41.18 1.73
5034 6032 0.462047 GCTGTAGCCGCCACAATAGT 60.462 55.000 0.00 0.00 34.31 2.12
5035 6033 2.012051 GCTGTAGCCGCCACAATAGTT 61.012 52.381 0.00 0.00 34.31 2.24
5036 6034 1.665679 CTGTAGCCGCCACAATAGTTG 59.334 52.381 0.00 0.00 0.00 3.16
5037 6035 1.014352 GTAGCCGCCACAATAGTTGG 58.986 55.000 0.00 0.00 34.12 3.77
5038 6036 0.906066 TAGCCGCCACAATAGTTGGA 59.094 50.000 0.00 0.00 34.12 3.53
5039 6037 0.392998 AGCCGCCACAATAGTTGGAG 60.393 55.000 0.00 0.00 34.12 3.86
5040 6038 0.676782 GCCGCCACAATAGTTGGAGT 60.677 55.000 0.00 0.00 34.12 3.85
5041 6039 1.406341 GCCGCCACAATAGTTGGAGTA 60.406 52.381 0.00 0.00 34.12 2.59
5042 6040 2.550978 CCGCCACAATAGTTGGAGTAG 58.449 52.381 0.00 0.00 34.12 2.57
5043 6041 2.167693 CCGCCACAATAGTTGGAGTAGA 59.832 50.000 0.00 0.00 34.12 2.59
5044 6042 3.448686 CGCCACAATAGTTGGAGTAGAG 58.551 50.000 0.00 0.00 34.12 2.43
5045 6043 3.738281 CGCCACAATAGTTGGAGTAGAGG 60.738 52.174 0.00 0.00 34.12 3.69
5046 6044 3.798202 CCACAATAGTTGGAGTAGAGGC 58.202 50.000 0.00 0.00 34.12 4.70
5047 6045 3.448686 CACAATAGTTGGAGTAGAGGCG 58.551 50.000 0.00 0.00 34.12 5.52
5048 6046 2.159085 ACAATAGTTGGAGTAGAGGCGC 60.159 50.000 0.00 0.00 34.12 6.53
5049 6047 0.669077 ATAGTTGGAGTAGAGGCGCG 59.331 55.000 0.00 0.00 0.00 6.86
5050 6048 2.001361 TAGTTGGAGTAGAGGCGCGC 62.001 60.000 25.94 25.94 0.00 6.86
5051 6049 4.143333 TTGGAGTAGAGGCGCGCC 62.143 66.667 42.34 42.34 0.00 6.53
5067 6065 4.856801 CCAGGATCAACGGGGCGG 62.857 72.222 0.00 0.00 0.00 6.13
5087 6085 3.403936 GGGCAGCATAAACCGATCT 57.596 52.632 0.00 0.00 0.00 2.75
5088 6086 2.543777 GGGCAGCATAAACCGATCTA 57.456 50.000 0.00 0.00 0.00 1.98
5089 6087 2.143925 GGGCAGCATAAACCGATCTAC 58.856 52.381 0.00 0.00 0.00 2.59
5090 6088 2.484770 GGGCAGCATAAACCGATCTACA 60.485 50.000 0.00 0.00 0.00 2.74
5091 6089 2.802816 GGCAGCATAAACCGATCTACAG 59.197 50.000 0.00 0.00 0.00 2.74
5092 6090 3.492656 GGCAGCATAAACCGATCTACAGA 60.493 47.826 0.00 0.00 0.00 3.41
5093 6091 4.310769 GCAGCATAAACCGATCTACAGAT 58.689 43.478 0.00 0.00 37.51 2.90
5094 6092 4.387256 GCAGCATAAACCGATCTACAGATC 59.613 45.833 8.86 8.86 45.60 2.75
5109 6107 7.873719 TCTACAGATCAGAAAACCAAAAACA 57.126 32.000 0.00 0.00 0.00 2.83
5110 6108 8.287439 TCTACAGATCAGAAAACCAAAAACAA 57.713 30.769 0.00 0.00 0.00 2.83
5111 6109 8.744652 TCTACAGATCAGAAAACCAAAAACAAA 58.255 29.630 0.00 0.00 0.00 2.83
5112 6110 7.595311 ACAGATCAGAAAACCAAAAACAAAC 57.405 32.000 0.00 0.00 0.00 2.93
5113 6111 7.158021 ACAGATCAGAAAACCAAAAACAAACA 58.842 30.769 0.00 0.00 0.00 2.83
5114 6112 7.117667 ACAGATCAGAAAACCAAAAACAAACAC 59.882 33.333 0.00 0.00 0.00 3.32
5115 6113 6.593770 AGATCAGAAAACCAAAAACAAACACC 59.406 34.615 0.00 0.00 0.00 4.16
5116 6114 4.686554 TCAGAAAACCAAAAACAAACACCG 59.313 37.500 0.00 0.00 0.00 4.94
5117 6115 3.997681 AGAAAACCAAAAACAAACACCGG 59.002 39.130 0.00 0.00 0.00 5.28
5118 6116 3.404224 AAACCAAAAACAAACACCGGT 57.596 38.095 0.00 0.00 0.00 5.28
5119 6117 2.658373 ACCAAAAACAAACACCGGTC 57.342 45.000 2.59 0.00 0.00 4.79
5120 6118 1.893801 ACCAAAAACAAACACCGGTCA 59.106 42.857 2.59 0.00 0.00 4.02
5121 6119 2.299297 ACCAAAAACAAACACCGGTCAA 59.701 40.909 2.59 0.00 0.00 3.18
5122 6120 3.055747 ACCAAAAACAAACACCGGTCAAT 60.056 39.130 2.59 0.00 0.00 2.57
5123 6121 3.553917 CCAAAAACAAACACCGGTCAATC 59.446 43.478 2.59 0.00 0.00 2.67
5124 6122 4.177026 CAAAAACAAACACCGGTCAATCA 58.823 39.130 2.59 0.00 0.00 2.57
5125 6123 4.457834 AAAACAAACACCGGTCAATCAA 57.542 36.364 2.59 0.00 0.00 2.57
5126 6124 4.664150 AAACAAACACCGGTCAATCAAT 57.336 36.364 2.59 0.00 0.00 2.57
5127 6125 3.915437 ACAAACACCGGTCAATCAATC 57.085 42.857 2.59 0.00 0.00 2.67
5128 6126 2.225491 ACAAACACCGGTCAATCAATCG 59.775 45.455 2.59 0.00 0.00 3.34
5129 6127 2.465860 AACACCGGTCAATCAATCGA 57.534 45.000 2.59 0.00 0.00 3.59
5130 6128 1.722011 ACACCGGTCAATCAATCGAC 58.278 50.000 2.59 0.00 0.00 4.20
5131 6129 1.001520 ACACCGGTCAATCAATCGACA 59.998 47.619 2.59 0.00 33.66 4.35
5132 6130 2.073056 CACCGGTCAATCAATCGACAA 58.927 47.619 2.59 0.00 33.66 3.18
5133 6131 2.094258 CACCGGTCAATCAATCGACAAG 59.906 50.000 2.59 0.00 33.66 3.16
5134 6132 2.028476 ACCGGTCAATCAATCGACAAGA 60.028 45.455 0.00 0.00 33.66 3.02
5135 6133 2.604914 CCGGTCAATCAATCGACAAGAG 59.395 50.000 0.00 0.00 33.66 2.85
5136 6134 3.511699 CGGTCAATCAATCGACAAGAGA 58.488 45.455 0.00 0.00 33.66 3.10
5137 6135 3.549471 CGGTCAATCAATCGACAAGAGAG 59.451 47.826 0.00 0.00 33.66 3.20
5138 6136 4.675408 CGGTCAATCAATCGACAAGAGAGA 60.675 45.833 0.00 0.00 33.66 3.10
5139 6137 5.171476 GGTCAATCAATCGACAAGAGAGAA 58.829 41.667 0.00 0.00 33.66 2.87
5140 6138 5.639506 GGTCAATCAATCGACAAGAGAGAAA 59.360 40.000 0.00 0.00 33.66 2.52
5141 6139 6.147821 GGTCAATCAATCGACAAGAGAGAAAA 59.852 38.462 0.00 0.00 33.66 2.29
5142 6140 7.307989 GGTCAATCAATCGACAAGAGAGAAAAA 60.308 37.037 0.00 0.00 33.66 1.94
5170 6168 9.690913 AATCCAATCAATAGATCAGTGAAAAGA 57.309 29.630 0.00 0.00 34.38 2.52
5171 6169 8.498054 TCCAATCAATAGATCAGTGAAAAGAC 57.502 34.615 0.00 0.00 34.38 3.01
5172 6170 8.324306 TCCAATCAATAGATCAGTGAAAAGACT 58.676 33.333 0.00 0.00 34.38 3.24
5173 6171 8.610896 CCAATCAATAGATCAGTGAAAAGACTC 58.389 37.037 0.00 0.00 34.38 3.36
5174 6172 9.381033 CAATCAATAGATCAGTGAAAAGACTCT 57.619 33.333 0.00 0.00 34.38 3.24
5175 6173 9.598517 AATCAATAGATCAGTGAAAAGACTCTC 57.401 33.333 0.00 0.00 34.38 3.20
5176 6174 8.359875 TCAATAGATCAGTGAAAAGACTCTCT 57.640 34.615 0.00 0.00 0.00 3.10
5177 6175 9.467796 TCAATAGATCAGTGAAAAGACTCTCTA 57.532 33.333 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.097038 TGATACAAGATTAGTGCAAAAGTCTCT 58.903 33.333 0.00 0.00 0.00 3.10
39 40 8.757164 GTACATTGCATGTGCTAGTATGTATA 57.243 34.615 17.11 4.96 44.60 1.47
40 41 7.658179 GTACATTGCATGTGCTAGTATGTAT 57.342 36.000 17.11 4.06 44.60 2.29
42 43 5.991328 GTACATTGCATGTGCTAGTATGT 57.009 39.130 6.55 11.81 44.60 2.29
50 51 1.672881 GAGGGAGTACATTGCATGTGC 59.327 52.381 10.77 9.63 44.60 4.57
51 52 2.292267 GGAGGGAGTACATTGCATGTG 58.708 52.381 10.77 5.29 44.60 3.21
53 54 1.134401 ACGGAGGGAGTACATTGCATG 60.134 52.381 0.00 0.00 0.00 4.06
55 56 0.535335 GACGGAGGGAGTACATTGCA 59.465 55.000 0.00 0.00 0.00 4.08
56 57 0.179081 GGACGGAGGGAGTACATTGC 60.179 60.000 0.00 0.00 0.00 3.56
57 58 1.191535 TGGACGGAGGGAGTACATTG 58.808 55.000 0.00 0.00 0.00 2.82
59 60 2.176247 ATTGGACGGAGGGAGTACAT 57.824 50.000 0.00 0.00 31.71 2.29
60 61 2.832643 TATTGGACGGAGGGAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
61 62 5.997384 ATATTATTGGACGGAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
62 63 7.472741 TCTTATATTATTGGACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
63 64 6.320518 TCTTATATTATTGGACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
64 65 6.628398 GCTCTTATATTATTGGACGGAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
66 67 5.420409 GCTCTTATATTATTGGACGGAGGG 58.580 45.833 0.00 0.00 0.00 4.30
67 68 5.103000 CGCTCTTATATTATTGGACGGAGG 58.897 45.833 0.00 0.00 0.00 4.30
68 69 5.710984 ACGCTCTTATATTATTGGACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
69 70 5.717078 ACGCTCTTATATTATTGGACGGA 57.283 39.130 0.00 0.00 0.00 4.69
70 71 6.780706 AAACGCTCTTATATTATTGGACGG 57.219 37.500 0.00 0.00 0.00 4.79
71 72 8.332464 TCAAAAACGCTCTTATATTATTGGACG 58.668 33.333 0.00 0.00 0.00 4.79
72 73 9.434559 GTCAAAAACGCTCTTATATTATTGGAC 57.565 33.333 0.00 0.00 0.00 4.02
74 75 9.221775 GTGTCAAAAACGCTCTTATATTATTGG 57.778 33.333 0.00 0.00 35.42 3.16
75 76 9.988350 AGTGTCAAAAACGCTCTTATATTATTG 57.012 29.630 0.00 0.00 45.69 1.90
80 81 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
81 82 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
82 83 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
84 85 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
86 87 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
113 114 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
114 115 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
116 117 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
117 118 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
118 119 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
119 120 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
120 121 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
122 123 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
123 124 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
124 125 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
126 127 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
130 131 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
131 132 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
132 133 1.049289 AATGCTACTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
133 134 0.831307 AAATGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
134 135 2.693267 AAAATGCTACTCCCTCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
156 157 9.562583 GAGCATATACTACTGTACTATGCTTTC 57.437 37.037 22.57 14.34 44.53 2.62
245 246 2.838736 AGCATGTTATACCGGCTCAAG 58.161 47.619 0.00 0.00 0.00 3.02
264 265 9.166173 TGTCTATGGTGATTTTGTCAATCTTAG 57.834 33.333 0.00 0.00 38.90 2.18
355 356 6.143278 GGTTTAACTTACACTGCAATTTTCGG 59.857 38.462 0.00 0.00 0.00 4.30
364 365 7.443259 TTGGATAAGGTTTAACTTACACTGC 57.557 36.000 0.00 0.00 35.90 4.40
462 464 2.425143 TGAGGAATTGAGGATGTGCC 57.575 50.000 0.00 0.00 0.00 5.01
717 719 6.571150 GCCAAACACATGAGAAAAATAGCTCT 60.571 38.462 0.00 0.00 32.44 4.09
753 755 5.132144 ACACCTAATCGGATAACCCTCAAAT 59.868 40.000 0.00 0.00 36.31 2.32
878 880 7.780271 TGAGAGTAAGCTGGTCTTCTTCATATA 59.220 37.037 0.00 0.00 36.25 0.86
931 933 4.825085 TGCCTTCCCAAAATTACCGATATC 59.175 41.667 0.00 0.00 0.00 1.63
1072 1842 2.186644 CCCATGATGCCGACGACA 59.813 61.111 0.00 0.00 0.00 4.35
1276 2059 2.264794 GGATCCGGCGTGAACTGT 59.735 61.111 6.01 0.00 0.00 3.55
1291 2074 4.753662 AGCGTCGCCAGGTAGGGA 62.754 66.667 14.86 0.00 38.09 4.20
1330 2113 0.463833 CAATGGGGAGGCCGTAGAAC 60.464 60.000 0.00 0.00 0.00 3.01
1348 2131 0.109723 GTAAGCTGTTGGGGTGGACA 59.890 55.000 0.00 0.00 0.00 4.02
1364 2147 4.494484 CTGTTGATGGTGATGACGAGTAA 58.506 43.478 0.00 0.00 0.00 2.24
1366 2149 2.932622 GCTGTTGATGGTGATGACGAGT 60.933 50.000 0.00 0.00 0.00 4.18
1423 2206 1.192428 GGGGCGAGTAGAGGAAGAAA 58.808 55.000 0.00 0.00 0.00 2.52
1561 2356 0.597898 TTTAGCTGCACGTACGCACA 60.598 50.000 16.72 12.84 36.86 4.57
1562 2357 0.093026 CTTTAGCTGCACGTACGCAC 59.907 55.000 16.72 8.27 36.86 5.34
1563 2358 0.038983 TCTTTAGCTGCACGTACGCA 60.039 50.000 16.72 5.12 40.32 5.24
1568 2367 4.425520 GAGAAGTATCTTTAGCTGCACGT 58.574 43.478 1.02 0.00 35.54 4.49
1593 2392 2.644992 GCCACCTCAAAGCCAACG 59.355 61.111 0.00 0.00 0.00 4.10
1858 2658 8.839745 TCTTCCTAAATAGGGCATCAATATCAT 58.160 33.333 6.64 0.00 43.79 2.45
2027 2827 1.650528 AAGCAGAACAGAGCTAGGGT 58.349 50.000 0.00 0.00 40.90 4.34
2139 3062 8.355169 ACGCATCAATTCTGCATAATAAAAGAT 58.645 29.630 9.52 0.00 39.64 2.40
2149 3072 3.276857 AGAGAACGCATCAATTCTGCAT 58.723 40.909 9.52 0.00 39.64 3.96
2164 3087 5.362430 AGAGAGAGAGAGAGAGAGAGAGAAC 59.638 48.000 0.00 0.00 0.00 3.01
2225 3148 5.063186 CCATGAAACGACAAATGAGAGAGAG 59.937 44.000 0.00 0.00 0.00 3.20
2226 3149 4.931601 CCATGAAACGACAAATGAGAGAGA 59.068 41.667 0.00 0.00 0.00 3.10
2227 3150 4.436584 GCCATGAAACGACAAATGAGAGAG 60.437 45.833 0.00 0.00 0.00 3.20
2228 3151 3.436704 GCCATGAAACGACAAATGAGAGA 59.563 43.478 0.00 0.00 0.00 3.10
2229 3152 3.438087 AGCCATGAAACGACAAATGAGAG 59.562 43.478 0.00 0.00 0.00 3.20
2230 3153 3.411446 AGCCATGAAACGACAAATGAGA 58.589 40.909 0.00 0.00 0.00 3.27
2231 3154 3.837213 AGCCATGAAACGACAAATGAG 57.163 42.857 0.00 0.00 0.00 2.90
2232 3155 3.820467 AGAAGCCATGAAACGACAAATGA 59.180 39.130 0.00 0.00 0.00 2.57
2233 3156 4.164822 AGAAGCCATGAAACGACAAATG 57.835 40.909 0.00 0.00 0.00 2.32
2234 3157 4.549458 CAAGAAGCCATGAAACGACAAAT 58.451 39.130 0.00 0.00 0.00 2.32
2235 3158 3.243367 CCAAGAAGCCATGAAACGACAAA 60.243 43.478 0.00 0.00 0.00 2.83
2236 3159 2.293122 CCAAGAAGCCATGAAACGACAA 59.707 45.455 0.00 0.00 0.00 3.18
2240 3163 1.247567 ACCCAAGAAGCCATGAAACG 58.752 50.000 0.00 0.00 0.00 3.60
2268 3191 2.398554 CCCGAACAAGGGCATGTCG 61.399 63.158 0.00 0.00 45.72 4.35
2276 3199 1.003718 GGAGTGACCCCGAACAAGG 60.004 63.158 0.00 0.00 0.00 3.61
2277 3200 0.324943 ATGGAGTGACCCCGAACAAG 59.675 55.000 0.00 0.00 38.00 3.16
2278 3201 0.768622 AATGGAGTGACCCCGAACAA 59.231 50.000 0.00 0.00 38.00 2.83
2973 3905 6.939132 AGAGAAGAATTAGTGGCATTGATG 57.061 37.500 0.00 0.00 0.00 3.07
3052 3986 9.236691 ACATGTAATTGCGCTTTTTATAAGATG 57.763 29.630 9.73 4.32 0.00 2.90
3319 4253 8.446273 CAAGGAAGAATATATTAGCGACATTGG 58.554 37.037 0.00 0.00 0.00 3.16
3468 4402 4.602340 ACACTCATATTATGGGACGGAC 57.398 45.455 10.56 0.00 34.00 4.79
3627 4561 6.980397 GCAGGCAGTACAATATTATTGCTTTT 59.020 34.615 14.88 0.47 35.57 2.27
3822 4756 3.902881 AATCGATGCAGAGGAGTTCTT 57.097 42.857 0.00 0.00 32.41 2.52
3886 4821 3.684788 AGATGCACAAAACTGTACCGATC 59.315 43.478 0.00 0.00 0.00 3.69
3926 4861 2.415625 GGGTCGACTTGTAGTAGCACAG 60.416 54.545 16.46 0.00 0.00 3.66
4075 5010 4.991056 CACTAGCTAACAAAGACAAGCAGA 59.009 41.667 0.00 0.00 37.44 4.26
4196 5133 1.927895 CGTGGAGTATGAGGACAAGC 58.072 55.000 0.00 0.00 0.00 4.01
4197 5134 1.478510 AGCGTGGAGTATGAGGACAAG 59.521 52.381 0.00 0.00 0.00 3.16
4198 5135 1.557099 AGCGTGGAGTATGAGGACAA 58.443 50.000 0.00 0.00 0.00 3.18
4199 5136 1.204704 CAAGCGTGGAGTATGAGGACA 59.795 52.381 0.00 0.00 0.00 4.02
4200 5137 1.204941 ACAAGCGTGGAGTATGAGGAC 59.795 52.381 4.26 0.00 0.00 3.85
4201 5138 1.476891 GACAAGCGTGGAGTATGAGGA 59.523 52.381 4.26 0.00 0.00 3.71
4202 5139 1.478510 AGACAAGCGTGGAGTATGAGG 59.521 52.381 4.26 0.00 0.00 3.86
4203 5140 2.949451 AGACAAGCGTGGAGTATGAG 57.051 50.000 4.26 0.00 0.00 2.90
4204 5141 2.560981 TGAAGACAAGCGTGGAGTATGA 59.439 45.455 4.26 0.00 0.00 2.15
4205 5142 2.959516 TGAAGACAAGCGTGGAGTATG 58.040 47.619 4.26 0.00 0.00 2.39
4206 5143 3.895232 ATGAAGACAAGCGTGGAGTAT 57.105 42.857 4.26 0.00 0.00 2.12
4207 5144 3.762288 AGTATGAAGACAAGCGTGGAGTA 59.238 43.478 4.26 0.00 0.00 2.59
4208 5145 2.563179 AGTATGAAGACAAGCGTGGAGT 59.437 45.455 4.26 0.00 0.00 3.85
4209 5146 3.119316 AGAGTATGAAGACAAGCGTGGAG 60.119 47.826 4.26 0.00 0.00 3.86
4210 5147 2.826128 AGAGTATGAAGACAAGCGTGGA 59.174 45.455 4.26 0.00 0.00 4.02
4211 5148 3.182967 GAGAGTATGAAGACAAGCGTGG 58.817 50.000 4.26 0.00 0.00 4.94
4212 5149 3.610242 GTGAGAGTATGAAGACAAGCGTG 59.390 47.826 0.00 0.00 0.00 5.34
4213 5150 3.255888 TGTGAGAGTATGAAGACAAGCGT 59.744 43.478 0.00 0.00 0.00 5.07
4214 5151 3.838120 TGTGAGAGTATGAAGACAAGCG 58.162 45.455 0.00 0.00 0.00 4.68
4222 5159 8.539544 TCAAATAGTGGATTGTGAGAGTATGAA 58.460 33.333 0.00 0.00 0.00 2.57
4233 5170 5.999205 TTTGCCATCAAATAGTGGATTGT 57.001 34.783 0.00 0.00 37.28 2.71
4276 5213 5.239306 CCAACTAGACAAGAATGCAGAAACA 59.761 40.000 0.00 0.00 0.00 2.83
4293 5230 5.401550 CCACACAAATTACATGCCAACTAG 58.598 41.667 0.00 0.00 0.00 2.57
4398 5372 4.877773 ACCCCCAAAAGATGCATATGTTA 58.122 39.130 0.00 0.00 0.00 2.41
4418 5392 5.521372 GTGTACGTATCAATAGGGTTCAACC 59.479 44.000 0.00 0.00 37.60 3.77
4419 5393 6.335777 AGTGTACGTATCAATAGGGTTCAAC 58.664 40.000 0.00 0.00 0.00 3.18
4482 5457 6.025749 ACTCTTATTTAAAAGGTTGCCAGC 57.974 37.500 0.00 0.00 0.00 4.85
4518 5498 1.946768 CGCGAACCCCAAATGTGATAT 59.053 47.619 0.00 0.00 0.00 1.63
4540 5520 4.963276 TTGAAAGTGATAATTCAGCGGG 57.037 40.909 0.00 0.00 36.93 6.13
4587 5568 8.378172 TGTGGAGTTTCTAGTGACAAAATTAG 57.622 34.615 0.00 0.00 0.00 1.73
4601 5582 6.667414 TGGCCATTATTAAATGTGGAGTTTCT 59.333 34.615 0.00 0.00 40.84 2.52
4602 5583 6.872920 TGGCCATTATTAAATGTGGAGTTTC 58.127 36.000 0.00 0.00 40.84 2.78
4605 5586 5.518865 ACTGGCCATTATTAAATGTGGAGT 58.481 37.500 5.51 0.00 40.84 3.85
4615 5596 5.362105 ACCGTCTAAACTGGCCATTATTA 57.638 39.130 5.51 5.36 0.00 0.98
4622 5604 3.565063 TGTTTAAACCGTCTAAACTGGCC 59.435 43.478 15.59 0.00 39.14 5.36
4623 5605 4.530388 GTGTTTAAACCGTCTAAACTGGC 58.470 43.478 15.59 0.00 39.14 4.85
4634 5616 5.058734 GCATGTCATAAACGTGTTTAAACCG 59.941 40.000 20.49 20.49 45.19 4.44
4643 5625 3.487376 GGGTCATGCATGTCATAAACGTG 60.487 47.826 25.43 0.00 46.01 4.49
4656 5638 0.322726 CCTGATGTGTGGGTCATGCA 60.323 55.000 0.00 0.00 0.00 3.96
4670 5652 2.361610 CTTTGCCGCCACCCTGAT 60.362 61.111 0.00 0.00 0.00 2.90
4680 5668 1.164041 AACCGGAGTTGACTTTGCCG 61.164 55.000 9.46 0.00 41.53 5.69
4694 5682 7.148523 GGTCTACTTAACAGTCAAAATAACCGG 60.149 40.741 0.00 0.00 34.06 5.28
4696 5684 7.386025 ACGGTCTACTTAACAGTCAAAATAACC 59.614 37.037 0.00 0.00 34.06 2.85
4710 5698 5.393787 CCAGCTGTCATAACGGTCTACTTAA 60.394 44.000 13.81 0.00 34.00 1.85
4744 5734 1.623811 TCAAGGTCAAGCTCCTACCAC 59.376 52.381 12.97 0.00 35.64 4.16
4747 5737 1.404315 CCGTCAAGGTCAAGCTCCTAC 60.404 57.143 0.00 0.00 34.56 3.18
4784 5782 1.450312 GCATCCTGTTCGGGTCCTG 60.450 63.158 0.00 0.00 0.00 3.86
4787 5785 2.511600 CCGCATCCTGTTCGGGTC 60.512 66.667 0.00 0.00 39.52 4.46
4806 5804 4.577246 CTCTACCTGCTCGCGCCC 62.577 72.222 0.00 0.00 34.43 6.13
4807 5805 3.518998 TCTCTACCTGCTCGCGCC 61.519 66.667 0.00 0.00 34.43 6.53
4809 5807 2.409651 GGTCTCTACCTGCTCGCG 59.590 66.667 0.00 0.00 43.08 5.87
4818 5816 2.184579 GCCCGTGCAGGTCTCTAC 59.815 66.667 5.57 0.00 38.74 2.59
4819 5817 3.449227 CGCCCGTGCAGGTCTCTA 61.449 66.667 5.57 0.00 38.74 2.43
4841 5839 3.939740 ATATGGATGTGGACAGTTGCT 57.060 42.857 0.00 0.00 0.00 3.91
4847 5845 3.005791 CGTGAGCTATATGGATGTGGACA 59.994 47.826 0.00 0.00 0.00 4.02
4885 5883 0.381445 GCAACTCACATGTGTGCACA 59.619 50.000 26.35 17.42 45.25 4.57
4886 5884 0.381445 TGCAACTCACATGTGTGCAC 59.619 50.000 28.77 18.38 45.25 4.57
4887 5885 0.381445 GTGCAACTCACATGTGTGCA 59.619 50.000 28.77 28.77 45.25 4.57
4888 5886 0.658244 CGTGCAACTCACATGTGTGC 60.658 55.000 25.21 25.21 45.92 4.57
4889 5887 0.936600 TCGTGCAACTCACATGTGTG 59.063 50.000 24.63 23.70 45.92 3.82
4890 5888 1.882912 ATCGTGCAACTCACATGTGT 58.117 45.000 24.63 4.31 45.92 3.72
4891 5889 2.222886 GCTATCGTGCAACTCACATGTG 60.223 50.000 20.18 20.18 45.92 3.21
4892 5890 2.002586 GCTATCGTGCAACTCACATGT 58.997 47.619 0.00 0.00 45.92 3.21
4893 5891 2.274437 AGCTATCGTGCAACTCACATG 58.726 47.619 0.00 0.00 45.92 3.21
4894 5892 2.680312 AGCTATCGTGCAACTCACAT 57.320 45.000 0.00 0.00 45.92 3.21
4895 5893 2.735444 GCTAGCTATCGTGCAACTCACA 60.735 50.000 7.70 0.00 45.92 3.58
4896 5894 1.855360 GCTAGCTATCGTGCAACTCAC 59.145 52.381 7.70 0.00 42.23 3.51
4897 5895 1.202417 GGCTAGCTATCGTGCAACTCA 60.202 52.381 15.72 0.00 34.99 3.41
4898 5896 1.067821 AGGCTAGCTATCGTGCAACTC 59.932 52.381 15.72 0.00 34.99 3.01
4899 5897 1.115467 AGGCTAGCTATCGTGCAACT 58.885 50.000 15.72 0.00 34.99 3.16
4900 5898 1.212616 CAGGCTAGCTATCGTGCAAC 58.787 55.000 15.72 0.00 34.99 4.17
4901 5899 0.104855 CCAGGCTAGCTATCGTGCAA 59.895 55.000 15.72 0.00 34.99 4.08
4902 5900 0.755327 TCCAGGCTAGCTATCGTGCA 60.755 55.000 15.72 0.00 34.99 4.57
4903 5901 0.038709 CTCCAGGCTAGCTATCGTGC 60.039 60.000 15.72 3.26 0.00 5.34
4904 5902 0.600557 CCTCCAGGCTAGCTATCGTG 59.399 60.000 15.72 9.72 0.00 4.35
4905 5903 0.186386 ACCTCCAGGCTAGCTATCGT 59.814 55.000 15.72 0.92 39.32 3.73
4906 5904 0.600557 CACCTCCAGGCTAGCTATCG 59.399 60.000 15.72 0.49 39.32 2.92
4907 5905 0.320050 GCACCTCCAGGCTAGCTATC 59.680 60.000 15.72 0.00 39.32 2.08
4908 5906 0.399091 TGCACCTCCAGGCTAGCTAT 60.399 55.000 15.72 0.30 39.32 2.97
4909 5907 1.001631 TGCACCTCCAGGCTAGCTA 59.998 57.895 15.72 0.00 39.32 3.32
4910 5908 2.284921 TGCACCTCCAGGCTAGCT 60.285 61.111 15.72 0.00 39.32 3.32
4911 5909 2.124942 GTGCACCTCCAGGCTAGC 60.125 66.667 6.04 6.04 39.32 3.42
4912 5910 2.185350 CGTGCACCTCCAGGCTAG 59.815 66.667 12.15 0.00 39.32 3.42
4913 5911 3.390521 CCGTGCACCTCCAGGCTA 61.391 66.667 12.15 0.00 39.32 3.93
4925 5923 4.759096 GTGTTGCATCCGCCGTGC 62.759 66.667 0.00 0.00 42.81 5.34
4926 5924 1.695893 CTAGTGTTGCATCCGCCGTG 61.696 60.000 0.00 0.00 37.32 4.94
4927 5925 1.447838 CTAGTGTTGCATCCGCCGT 60.448 57.895 0.00 0.00 37.32 5.68
4928 5926 2.173669 CCTAGTGTTGCATCCGCCG 61.174 63.158 0.00 0.00 37.32 6.46
4929 5927 2.472909 GCCTAGTGTTGCATCCGCC 61.473 63.158 0.00 0.00 37.32 6.13
4930 5928 2.472909 GGCCTAGTGTTGCATCCGC 61.473 63.158 0.00 0.00 39.24 5.54
4931 5929 1.078497 TGGCCTAGTGTTGCATCCG 60.078 57.895 3.32 0.00 0.00 4.18
4932 5930 1.369091 CGTGGCCTAGTGTTGCATCC 61.369 60.000 3.32 0.00 0.00 3.51
4933 5931 1.982073 GCGTGGCCTAGTGTTGCATC 61.982 60.000 3.32 0.00 0.00 3.91
4934 5932 2.040544 GCGTGGCCTAGTGTTGCAT 61.041 57.895 3.32 0.00 0.00 3.96
4935 5933 2.668212 GCGTGGCCTAGTGTTGCA 60.668 61.111 3.32 0.00 0.00 4.08
4936 5934 2.040544 ATGCGTGGCCTAGTGTTGC 61.041 57.895 3.32 0.00 0.00 4.17
4937 5935 1.796151 CATGCGTGGCCTAGTGTTG 59.204 57.895 3.32 0.00 0.00 3.33
4938 5936 2.040544 GCATGCGTGGCCTAGTGTT 61.041 57.895 8.27 0.00 0.00 3.32
4939 5937 2.436646 GCATGCGTGGCCTAGTGT 60.437 61.111 8.27 0.00 0.00 3.55
4947 5945 3.424300 CCACTATGGCATGCGTGG 58.576 61.111 25.97 25.97 40.71 4.94
4948 5946 0.099259 CAACCACTATGGCATGCGTG 59.901 55.000 12.44 18.95 42.67 5.34
4949 5947 0.035534 TCAACCACTATGGCATGCGT 60.036 50.000 12.44 5.48 42.67 5.24
4950 5948 1.093972 TTCAACCACTATGGCATGCG 58.906 50.000 12.44 3.57 42.67 4.73
4951 5949 3.130869 TGATTTCAACCACTATGGCATGC 59.869 43.478 9.90 9.90 42.67 4.06
4952 5950 4.202080 CCTGATTTCAACCACTATGGCATG 60.202 45.833 10.98 2.76 42.67 4.06
4953 5951 3.956199 CCTGATTTCAACCACTATGGCAT 59.044 43.478 4.88 4.88 42.67 4.40
4954 5952 3.010027 TCCTGATTTCAACCACTATGGCA 59.990 43.478 0.00 0.00 42.67 4.92
4955 5953 3.620488 TCCTGATTTCAACCACTATGGC 58.380 45.455 0.00 0.00 42.67 4.40
4956 5954 4.878397 GTCTCCTGATTTCAACCACTATGG 59.122 45.833 0.00 0.00 45.02 2.74
4957 5955 4.568359 CGTCTCCTGATTTCAACCACTATG 59.432 45.833 0.00 0.00 0.00 2.23
4958 5956 4.223032 ACGTCTCCTGATTTCAACCACTAT 59.777 41.667 0.00 0.00 0.00 2.12
4959 5957 3.576982 ACGTCTCCTGATTTCAACCACTA 59.423 43.478 0.00 0.00 0.00 2.74
4960 5958 2.368875 ACGTCTCCTGATTTCAACCACT 59.631 45.455 0.00 0.00 0.00 4.00
4961 5959 2.767505 ACGTCTCCTGATTTCAACCAC 58.232 47.619 0.00 0.00 0.00 4.16
4962 5960 3.138304 CAACGTCTCCTGATTTCAACCA 58.862 45.455 0.00 0.00 0.00 3.67
4963 5961 2.484264 CCAACGTCTCCTGATTTCAACC 59.516 50.000 0.00 0.00 0.00 3.77
4964 5962 3.058914 CACCAACGTCTCCTGATTTCAAC 60.059 47.826 0.00 0.00 0.00 3.18
4965 5963 3.138304 CACCAACGTCTCCTGATTTCAA 58.862 45.455 0.00 0.00 0.00 2.69
4966 5964 2.104111 ACACCAACGTCTCCTGATTTCA 59.896 45.455 0.00 0.00 0.00 2.69
4967 5965 2.737252 GACACCAACGTCTCCTGATTTC 59.263 50.000 0.00 0.00 32.92 2.17
4968 5966 2.767505 GACACCAACGTCTCCTGATTT 58.232 47.619 0.00 0.00 32.92 2.17
4969 5967 1.336887 CGACACCAACGTCTCCTGATT 60.337 52.381 0.00 0.00 33.54 2.57
4970 5968 0.243907 CGACACCAACGTCTCCTGAT 59.756 55.000 0.00 0.00 33.54 2.90
4971 5969 0.820482 TCGACACCAACGTCTCCTGA 60.820 55.000 0.00 0.00 33.54 3.86
4972 5970 0.663568 GTCGACACCAACGTCTCCTG 60.664 60.000 11.55 0.00 33.54 3.86
4973 5971 1.658673 GTCGACACCAACGTCTCCT 59.341 57.895 11.55 0.00 33.54 3.69
4974 5972 1.728426 CGTCGACACCAACGTCTCC 60.728 63.158 17.16 0.00 34.30 3.71
4975 5973 0.725118 CTCGTCGACACCAACGTCTC 60.725 60.000 17.16 0.00 39.78 3.36
4976 5974 1.281960 CTCGTCGACACCAACGTCT 59.718 57.895 17.16 0.00 39.78 4.18
4977 5975 2.362800 GCTCGTCGACACCAACGTC 61.363 63.158 17.16 0.00 39.78 4.34
4978 5976 2.354305 GCTCGTCGACACCAACGT 60.354 61.111 17.16 0.00 39.78 3.99
4979 5977 3.103911 GGCTCGTCGACACCAACG 61.104 66.667 17.16 0.39 40.17 4.10
4980 5978 2.022129 CAGGCTCGTCGACACCAAC 61.022 63.158 17.16 1.23 0.00 3.77
4981 5979 2.338620 CAGGCTCGTCGACACCAA 59.661 61.111 17.16 0.00 0.00 3.67
4982 5980 4.357947 GCAGGCTCGTCGACACCA 62.358 66.667 17.16 0.00 0.00 4.17
4983 5981 4.357947 TGCAGGCTCGTCGACACC 62.358 66.667 17.16 13.42 0.00 4.16
4984 5982 2.807045 CTGCAGGCTCGTCGACAC 60.807 66.667 17.16 3.93 0.00 3.67
4985 5983 3.295273 ACTGCAGGCTCGTCGACA 61.295 61.111 19.93 1.87 0.00 4.35
4986 5984 2.807045 CACTGCAGGCTCGTCGAC 60.807 66.667 19.93 5.18 0.00 4.20
4987 5985 4.056125 CCACTGCAGGCTCGTCGA 62.056 66.667 19.93 0.00 0.00 4.20
4988 5986 3.362399 ATCCACTGCAGGCTCGTCG 62.362 63.158 19.93 0.00 0.00 5.12
4989 5987 1.520342 GATCCACTGCAGGCTCGTC 60.520 63.158 19.93 5.69 0.00 4.20
4990 5988 2.285773 TGATCCACTGCAGGCTCGT 61.286 57.895 19.93 0.00 0.00 4.18
4991 5989 1.812922 GTGATCCACTGCAGGCTCG 60.813 63.158 19.93 3.13 0.00 5.03
4992 5990 1.601171 AGTGATCCACTGCAGGCTC 59.399 57.895 19.93 9.18 43.63 4.70
4993 5991 3.817508 AGTGATCCACTGCAGGCT 58.182 55.556 19.93 0.00 43.63 4.58
5000 5998 1.298993 CAGCAGCCAGTGATCCACT 59.701 57.895 0.00 0.00 46.51 4.00
5001 5999 0.250234 TACAGCAGCCAGTGATCCAC 59.750 55.000 0.00 0.00 34.10 4.02
5002 6000 0.538584 CTACAGCAGCCAGTGATCCA 59.461 55.000 0.00 0.00 0.00 3.41
5003 6001 0.813210 GCTACAGCAGCCAGTGATCC 60.813 60.000 0.00 0.00 45.23 3.36
5004 6002 2.687842 GCTACAGCAGCCAGTGATC 58.312 57.895 0.00 0.00 45.23 2.92
5005 6003 4.950479 GCTACAGCAGCCAGTGAT 57.050 55.556 0.00 0.00 45.23 3.06
5013 6011 0.461870 TATTGTGGCGGCTACAGCAG 60.462 55.000 18.55 0.00 44.36 4.24
5014 6012 0.461870 CTATTGTGGCGGCTACAGCA 60.462 55.000 18.55 6.30 44.36 4.41
5015 6013 0.462047 ACTATTGTGGCGGCTACAGC 60.462 55.000 18.55 0.00 41.14 4.40
5016 6014 1.665679 CAACTATTGTGGCGGCTACAG 59.334 52.381 18.55 10.50 0.00 2.74
5017 6015 1.677518 CCAACTATTGTGGCGGCTACA 60.678 52.381 15.57 15.57 0.00 2.74
5018 6016 1.014352 CCAACTATTGTGGCGGCTAC 58.986 55.000 11.43 9.78 0.00 3.58
5019 6017 0.906066 TCCAACTATTGTGGCGGCTA 59.094 50.000 11.43 0.00 0.00 3.93
5020 6018 0.392998 CTCCAACTATTGTGGCGGCT 60.393 55.000 11.43 0.00 0.00 5.52
5021 6019 0.676782 ACTCCAACTATTGTGGCGGC 60.677 55.000 0.00 0.00 0.00 6.53
5022 6020 2.167693 TCTACTCCAACTATTGTGGCGG 59.832 50.000 0.00 0.00 0.00 6.13
5023 6021 3.448686 CTCTACTCCAACTATTGTGGCG 58.551 50.000 0.00 0.00 0.00 5.69
5024 6022 3.798202 CCTCTACTCCAACTATTGTGGC 58.202 50.000 0.00 0.00 0.00 5.01
5025 6023 3.738281 CGCCTCTACTCCAACTATTGTGG 60.738 52.174 0.00 0.00 0.00 4.17
5026 6024 3.448686 CGCCTCTACTCCAACTATTGTG 58.551 50.000 0.00 0.00 0.00 3.33
5027 6025 2.159085 GCGCCTCTACTCCAACTATTGT 60.159 50.000 0.00 0.00 0.00 2.71
5028 6026 2.474816 GCGCCTCTACTCCAACTATTG 58.525 52.381 0.00 0.00 0.00 1.90
5029 6027 1.067212 CGCGCCTCTACTCCAACTATT 59.933 52.381 0.00 0.00 0.00 1.73
5030 6028 0.669077 CGCGCCTCTACTCCAACTAT 59.331 55.000 0.00 0.00 0.00 2.12
5031 6029 2.001361 GCGCGCCTCTACTCCAACTA 62.001 60.000 23.24 0.00 0.00 2.24
5032 6030 2.885861 CGCGCCTCTACTCCAACT 59.114 61.111 0.00 0.00 0.00 3.16
5033 6031 2.886124 GCGCGCCTCTACTCCAAC 60.886 66.667 23.24 0.00 0.00 3.77
5034 6032 4.143333 GGCGCGCCTCTACTCCAA 62.143 66.667 41.71 0.00 0.00 3.53
5036 6034 4.577246 CTGGCGCGCCTCTACTCC 62.577 72.222 45.79 21.40 36.94 3.85
5037 6035 4.577246 CCTGGCGCGCCTCTACTC 62.577 72.222 45.79 22.17 36.94 2.59
5039 6037 3.850095 GATCCTGGCGCGCCTCTAC 62.850 68.421 45.79 29.31 36.94 2.59
5040 6038 3.606662 GATCCTGGCGCGCCTCTA 61.607 66.667 45.79 31.68 36.94 2.43
5042 6040 4.838152 TTGATCCTGGCGCGCCTC 62.838 66.667 45.79 35.18 36.94 4.70
5050 6048 4.856801 CCGCCCCGTTGATCCTGG 62.857 72.222 0.00 0.00 0.00 4.45
5064 6062 4.552745 GTTTATGCTGCCCGCCGC 62.553 66.667 0.00 0.00 38.05 6.53
5065 6063 3.887868 GGTTTATGCTGCCCGCCG 61.888 66.667 0.00 0.00 38.05 6.46
5066 6064 3.887868 CGGTTTATGCTGCCCGCC 61.888 66.667 0.00 0.00 38.05 6.13
5067 6065 2.117941 GATCGGTTTATGCTGCCCGC 62.118 60.000 9.05 0.00 40.23 6.13
5068 6066 0.532862 AGATCGGTTTATGCTGCCCG 60.533 55.000 7.79 7.79 41.75 6.13
5069 6067 2.143925 GTAGATCGGTTTATGCTGCCC 58.856 52.381 0.00 0.00 0.00 5.36
5070 6068 2.802816 CTGTAGATCGGTTTATGCTGCC 59.197 50.000 0.00 0.00 0.00 4.85
5071 6069 3.717707 TCTGTAGATCGGTTTATGCTGC 58.282 45.455 0.00 0.00 0.00 5.25
5084 6082 8.463930 TGTTTTTGGTTTTCTGATCTGTAGAT 57.536 30.769 0.00 0.00 37.51 1.98
5085 6083 7.873719 TGTTTTTGGTTTTCTGATCTGTAGA 57.126 32.000 0.00 0.00 0.00 2.59
5086 6084 8.807581 GTTTGTTTTTGGTTTTCTGATCTGTAG 58.192 33.333 0.00 0.00 0.00 2.74
5087 6085 8.307483 TGTTTGTTTTTGGTTTTCTGATCTGTA 58.693 29.630 0.00 0.00 0.00 2.74
5088 6086 7.117667 GTGTTTGTTTTTGGTTTTCTGATCTGT 59.882 33.333 0.00 0.00 0.00 3.41
5089 6087 7.412891 GGTGTTTGTTTTTGGTTTTCTGATCTG 60.413 37.037 0.00 0.00 0.00 2.90
5090 6088 6.593770 GGTGTTTGTTTTTGGTTTTCTGATCT 59.406 34.615 0.00 0.00 0.00 2.75
5091 6089 6.454981 CGGTGTTTGTTTTTGGTTTTCTGATC 60.455 38.462 0.00 0.00 0.00 2.92
5092 6090 5.350091 CGGTGTTTGTTTTTGGTTTTCTGAT 59.650 36.000 0.00 0.00 0.00 2.90
5093 6091 4.686554 CGGTGTTTGTTTTTGGTTTTCTGA 59.313 37.500 0.00 0.00 0.00 3.27
5094 6092 4.143009 CCGGTGTTTGTTTTTGGTTTTCTG 60.143 41.667 0.00 0.00 0.00 3.02
5095 6093 3.997681 CCGGTGTTTGTTTTTGGTTTTCT 59.002 39.130 0.00 0.00 0.00 2.52
5096 6094 3.747010 ACCGGTGTTTGTTTTTGGTTTTC 59.253 39.130 6.12 0.00 0.00 2.29
5097 6095 3.741249 ACCGGTGTTTGTTTTTGGTTTT 58.259 36.364 6.12 0.00 0.00 2.43
5098 6096 3.244112 TGACCGGTGTTTGTTTTTGGTTT 60.244 39.130 14.63 0.00 0.00 3.27
5099 6097 2.299297 TGACCGGTGTTTGTTTTTGGTT 59.701 40.909 14.63 0.00 0.00 3.67
5100 6098 1.893801 TGACCGGTGTTTGTTTTTGGT 59.106 42.857 14.63 0.00 0.00 3.67
5101 6099 2.656560 TGACCGGTGTTTGTTTTTGG 57.343 45.000 14.63 0.00 0.00 3.28
5102 6100 4.177026 TGATTGACCGGTGTTTGTTTTTG 58.823 39.130 14.63 0.00 0.00 2.44
5103 6101 4.457834 TGATTGACCGGTGTTTGTTTTT 57.542 36.364 14.63 0.00 0.00 1.94
5104 6102 4.457834 TTGATTGACCGGTGTTTGTTTT 57.542 36.364 14.63 0.00 0.00 2.43
5105 6103 4.616953 GATTGATTGACCGGTGTTTGTTT 58.383 39.130 14.63 0.00 0.00 2.83
5106 6104 3.304391 CGATTGATTGACCGGTGTTTGTT 60.304 43.478 14.63 0.00 0.00 2.83
5107 6105 2.225491 CGATTGATTGACCGGTGTTTGT 59.775 45.455 14.63 0.00 0.00 2.83
5108 6106 2.482336 TCGATTGATTGACCGGTGTTTG 59.518 45.455 14.63 0.00 0.00 2.93
5109 6107 2.482721 GTCGATTGATTGACCGGTGTTT 59.517 45.455 14.63 0.00 35.58 2.83
5110 6108 2.073816 GTCGATTGATTGACCGGTGTT 58.926 47.619 14.63 0.00 35.58 3.32
5111 6109 1.001520 TGTCGATTGATTGACCGGTGT 59.998 47.619 14.63 0.00 39.88 4.16
5112 6110 1.720805 TGTCGATTGATTGACCGGTG 58.279 50.000 14.63 0.00 39.88 4.94
5113 6111 2.028476 TCTTGTCGATTGATTGACCGGT 60.028 45.455 6.92 6.92 39.88 5.28
5114 6112 2.604914 CTCTTGTCGATTGATTGACCGG 59.395 50.000 0.00 0.00 39.88 5.28
5115 6113 3.511699 TCTCTTGTCGATTGATTGACCG 58.488 45.455 8.51 1.63 39.88 4.79
5116 6114 4.748892 TCTCTCTTGTCGATTGATTGACC 58.251 43.478 8.51 0.00 39.88 4.02
5117 6115 6.712241 TTTCTCTCTTGTCGATTGATTGAC 57.288 37.500 4.70 4.70 40.79 3.18
5118 6116 7.728847 TTTTTCTCTCTTGTCGATTGATTGA 57.271 32.000 0.00 0.00 0.00 2.57
5144 6142 9.690913 TCTTTTCACTGATCTATTGATTGGATT 57.309 29.630 0.00 0.00 32.19 3.01
5145 6143 9.118300 GTCTTTTCACTGATCTATTGATTGGAT 57.882 33.333 0.00 0.00 32.19 3.41
5146 6144 8.324306 AGTCTTTTCACTGATCTATTGATTGGA 58.676 33.333 0.00 0.00 32.19 3.53
5147 6145 8.503458 AGTCTTTTCACTGATCTATTGATTGG 57.497 34.615 0.00 0.00 32.19 3.16
5148 6146 9.381033 AGAGTCTTTTCACTGATCTATTGATTG 57.619 33.333 0.00 0.00 32.19 2.67
5149 6147 9.598517 GAGAGTCTTTTCACTGATCTATTGATT 57.401 33.333 0.00 0.00 32.19 2.57
5150 6148 8.980596 AGAGAGTCTTTTCACTGATCTATTGAT 58.019 33.333 0.00 0.00 35.26 2.57
5151 6149 8.359875 AGAGAGTCTTTTCACTGATCTATTGA 57.640 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.