AutoCloner

Multiple sequence alignment - TraesCS2D01G040700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G040700	chr2D	100.000	4089	0	0	1	4089	14779254	14775166	0.000000e+00	7552.0
1	TraesCS2D01G040700	chr2D	86.589	343	33	6	258	594	14785093	14784758	2.320000e-97	366.0
2	TraesCS2D01G040700	chr2D	83.846	260	33	5	267	526	14801194	14800944	5.280000e-59	239.0
3	TraesCS2D01G040700	chr2D	89.831	118	8	2	1	118	14786547	14786434	9.160000e-32	148.0
4	TraesCS2D01G040700	chr2B	91.783	4004	211	43	145	4089	26574852	26570908	0.000000e+00	5463.0
5	TraesCS2D01G040700	chr2B	86.842	342	33	5	258	594	26581549	26581215	4.990000e-99	372.0
6	TraesCS2D01G040700	chr2B	83.643	269	34	6	258	526	26717911	26717653	1.140000e-60	244.0
7	TraesCS2D01G040700	chr2B	84.109	258	34	5	268	525	26589096	26588846	4.080000e-60	243.0
8	TraesCS2D01G040700	chr2B	97.122	139	4	0	4	142	26575038	26574900	6.830000e-58	235.0
9	TraesCS2D01G040700	chr2A	94.171	3002	127	23	145	3119	16872599	16869619	0.000000e+00	4530.0
10	TraesCS2D01G040700	chr2A	92.998	657	39	7	3433	4089	16868631	16867982	0.000000e+00	952.0
11	TraesCS2D01G040700	chr2A	86.145	332	33	9	269	594	16881677	16881353	3.030000e-91	346.0
12	TraesCS2D01G040700	chr2A	96.479	142	5	0	1	142	16872788	16872647	6.830000e-58	235.0
13	TraesCS2D01G040700	chr2A	87.156	218	11	5	3203	3419	16869367	16869166	8.840000e-57	231.0
14	TraesCS2D01G040700	chr2A	100.000	33	0	0	3117	3149	16869458	16869426	1.230000e-05	62.1
15	TraesCS2D01G040700	chr3D	83.333	2100	290	39	994	3071	581507695	581505634	0.000000e+00	1884.0
16	TraesCS2D01G040700	chr3D	79.962	2091	345	39	1036	3102	581514844	581512804	0.000000e+00	1472.0
17	TraesCS2D01G040700	chr3D	79.673	2140	340	63	974	3062	581518616	581516521	0.000000e+00	1454.0
18	TraesCS2D01G040700	chr3D	80.235	1958	325	36	1252	3183	581458707	581456786	0.000000e+00	1415.0
19	TraesCS2D01G040700	chr3D	77.281	1589	270	49	875	2407	581421247	581419694	0.000000e+00	850.0
20	TraesCS2D01G040700	chr3D	86.219	283	34	3	2905	3182	581419668	581419386	6.640000e-78	302.0
21	TraesCS2D01G040700	chr3D	83.462	260	26	10	3830	4089	581511862	581511620	4.110000e-55	226.0
22	TraesCS2D01G040700	chr3D	86.286	175	24	0	3915	4089	581402337	581402163	1.500000e-44	191.0
23	TraesCS2D01G040700	chr3B	80.685	2366	354	58	875	3182	776996223	776998543	0.000000e+00	1742.0
24	TraesCS2D01G040700	chr3B	80.142	2110	347	32	979	3059	776863296	776865362	0.000000e+00	1509.0
25	TraesCS2D01G040700	chr3B	78.779	2408	358	78	977	3324	777001092	777003406	0.000000e+00	1474.0
26	TraesCS2D01G040700	chr3B	82.711	723	78	22	3362	4054	776998625	776999330	2.100000e-167	599.0
27	TraesCS2D01G040700	chr3B	78.431	459	54	25	876	1320	776557819	776558246	1.460000e-64	257.0
28	TraesCS2D01G040700	chr3B	86.857	175	23	0	3915	4089	777004148	777004322	3.220000e-46	196.0
29	TraesCS2D01G040700	chr3A	83.166	1194	167	23	1913	3099	716587757	716588923	0.000000e+00	1061.0
30	TraesCS2D01G040700	chr3A	80.107	1121	171	30	912	2010	716563550	716564640	0.000000e+00	787.0
31	TraesCS2D01G040700	chr3A	76.788	1370	258	41	1223	2572	716627887	716629216	0.000000e+00	713.0
32	TraesCS2D01G040700	chr3A	86.097	597	80	2	2479	3073	716566774	716567369	1.240000e-179	640.0
33	TraesCS2D01G040700	chr3A	79.767	430	61	11	1047	1457	716567741	716568163	5.170000e-74	289.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G040700	chr2D	14775166	14779254	4088	True	7552.00	7552	100.000000	1	4089	1	chr2D.!!$R1	4088
1	TraesCS2D01G040700	chr2D	14784758	14786547	1789	True	257.00	366	88.210000	1	594	2	chr2D.!!$R3	593
2	TraesCS2D01G040700	chr2B	26570908	26575038	4130	True	2849.00	5463	94.452500	4	4089	2	chr2B.!!$R4	4085
3	TraesCS2D01G040700	chr2A	16867982	16872788	4806	True	1202.02	4530	94.160800	1	4089	5	chr2A.!!$R2	4088
4	TraesCS2D01G040700	chr3D	581456786	581458707	1921	True	1415.00	1415	80.235000	1252	3183	1	chr3D.!!$R2	1931
5	TraesCS2D01G040700	chr3D	581505634	581518616	12982	True	1259.00	1884	81.607500	974	4089	4	chr3D.!!$R4	3115
6	TraesCS2D01G040700	chr3D	581419386	581421247	1861	True	576.00	850	81.750000	875	3182	2	chr3D.!!$R3	2307
7	TraesCS2D01G040700	chr3B	776863296	776865362	2066	False	1509.00	1509	80.142000	979	3059	1	chr3B.!!$F2	2080
8	TraesCS2D01G040700	chr3B	776996223	777004322	8099	False	1002.75	1742	82.258000	875	4089	4	chr3B.!!$F3	3214
9	TraesCS2D01G040700	chr3A	716587757	716588923	1166	False	1061.00	1061	83.166000	1913	3099	1	chr3A.!!$F1	1186
10	TraesCS2D01G040700	chr3A	716627887	716629216	1329	False	713.00	713	76.788000	1223	2572	1	chr3A.!!$F2	1349
11	TraesCS2D01G040700	chr3A	716563550	716568163	4613	False	572.00	787	81.990333	912	3073	3	chr3A.!!$F3	2161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
142	1349	0.459585	GCACAGCATTTGCCAGATGG	60.460	55.000	0.00	0.00	43.38	3.51	F
1064	2431	0.392595	TTCATGCTCCTCTGCTGCTG	60.393	55.000	0.00	0.00	0.00	4.41	F
1080	2450	0.761187	GCTGCTCCATATGGTCTCCA	59.239	55.000	21.28	12.45	38.19	3.86	F
2619	16666	1.002468	CGTGTTGCTTGGGTCTTCAAG	60.002	52.381	0.00	0.00	44.97	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2023	15690	1.001745	GCGAATTCGTTGGTTGCACC	61.002	55.000	27.24	4.51	42.22	5.01	R
2928	16975	0.884704	ACGCTCCATTTGTTGTCGCT	60.885	50.000	0.00	0.00	0.00	4.93	R
3076	17126	4.567857	ACTACAAAGGCTATGGTAGGGAT	58.432	43.478	18.46	2.34	37.99	3.85	R
3637	18520	0.704076	TATGGCTTGATATGGGGGCC	59.296	55.000	0.00	0.00	42.73	5.80	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	3.267483	CCCTGAACACGTATGGTAAAGG	58.733	50.000	0.00	0.00	31.68	3.11
142	1349	0.459585	GCACAGCATTTGCCAGATGG	60.460	55.000	0.00	0.00	43.38	3.51
143	1350	0.892755	CACAGCATTTGCCAGATGGT	59.107	50.000	0.00	0.00	43.38	3.55
201	1454	9.010029	TCTTTTGTATTCTTTGTCTTGGGATAC	57.990	33.333	0.00	0.00	0.00	2.24
355	1666	6.657541	AGTCCTTAATTTATTGCCTCAACGAA	59.342	34.615	0.00	0.00	0.00	3.85
358	1669	9.349713	TCCTTAATTTATTGCCTCAACGAATAT	57.650	29.630	0.00	0.00	0.00	1.28
364	1675	1.396648	TGCCTCAACGAATATGTTGCG	59.603	47.619	1.88	0.00	46.85	4.85
402	1714	9.860898	GCTTCTTCTTTTATAATGTGGATTTGT	57.139	29.630	0.00	0.00	0.00	2.83
441	1757	3.426615	AGCTTGGATCGGATACCTCTAG	58.573	50.000	0.00	0.00	0.00	2.43
475	1791	3.516866	GAAGATACCGGCCGGGCTC	62.517	68.421	44.99	36.93	40.62	4.70
545	1861	3.791973	AGAATTGAGACTACCGAGCAG	57.208	47.619	0.00	0.00	0.00	4.24
549	1865	2.130272	TGAGACTACCGAGCAGATGT	57.870	50.000	0.00	0.00	0.00	3.06
595	1919	0.895100	TGGTTCTGGCTGACAATGGC	60.895	55.000	0.00	0.00	0.00	4.40
603	1927	1.892474	GGCTGACAATGGCCAAGTTTA	59.108	47.619	10.96	4.58	46.84	2.01
604	1928	2.298729	GGCTGACAATGGCCAAGTTTAA	59.701	45.455	10.96	1.24	46.84	1.52
635	1960	5.582269	TGCCTGAAATCGAAGAATAGACAAG	59.418	40.000	0.00	0.00	43.58	3.16
648	1973	2.145397	AGACAAGCGGATAGGACTCA	57.855	50.000	0.00	0.00	0.00	3.41
671	1996	2.801077	TCTGTCTCCGGAGTGTATGA	57.199	50.000	30.17	18.35	0.00	2.15
674	1999	3.117851	TCTGTCTCCGGAGTGTATGATCT	60.118	47.826	30.17	0.00	0.00	2.75
751	2078	6.993902	CCAAAAATTCATGGGAATAAGGATGG	59.006	38.462	0.00	0.00	42.87	3.51
753	2080	6.983906	AAATTCATGGGAATAAGGATGGTC	57.016	37.500	0.00	0.00	42.87	4.02
773	2103	4.202090	GGTCTATACACGTACCCCTCTTTG	60.202	50.000	0.00	0.00	0.00	2.77
952	2301	3.565902	TCATCGTCGAGATCACAAGCTAT	59.434	43.478	0.00	0.00	37.52	2.97
953	2302	4.755123	TCATCGTCGAGATCACAAGCTATA	59.245	41.667	0.00	0.00	37.52	1.31
973	2322	6.072893	GCTATAGAGTATATAGGCCGAGCTTC	60.073	46.154	12.58	0.00	0.00	3.86
974	2323	3.358118	AGAGTATATAGGCCGAGCTTCC	58.642	50.000	0.00	0.00	0.00	3.46
975	2324	3.090037	GAGTATATAGGCCGAGCTTCCA	58.910	50.000	0.00	0.00	0.00	3.53
976	2325	3.507411	AGTATATAGGCCGAGCTTCCAA	58.493	45.455	0.00	0.00	0.00	3.53
1033	2397	3.871594	CGTGAGCCTTTCCTACCAAATAG	59.128	47.826	0.00	0.00	0.00	1.73
1034	2398	4.623171	CGTGAGCCTTTCCTACCAAATAGT	60.623	45.833	0.00	0.00	0.00	2.12
1036	2400	6.412214	GTGAGCCTTTCCTACCAAATAGTAA	58.588	40.000	0.00	0.00	0.00	2.24
1037	2401	7.054751	GTGAGCCTTTCCTACCAAATAGTAAT	58.945	38.462	0.00	0.00	0.00	1.89
1064	2431	0.392595	TTCATGCTCCTCTGCTGCTG	60.393	55.000	0.00	0.00	0.00	4.41
1080	2450	0.761187	GCTGCTCCATATGGTCTCCA	59.239	55.000	21.28	12.45	38.19	3.86
1452	13746	2.108157	AACAAGAGCGTCGGCACA	59.892	55.556	0.00	0.00	43.41	4.57
1461	13755	2.567049	GTCGGCACAGTCGCTACT	59.433	61.111	0.00	0.00	35.91	2.57
1809	14103	6.553100	ACCAAATAGTTTCCTGGTCATTTGAA	59.447	34.615	15.71	0.00	37.66	2.69
1874	14225	1.966451	CACCGAAGACCCTGTTGCC	60.966	63.158	0.00	0.00	0.00	4.52
1919	14276	3.615496	GTCATTGGAGTCATTGCAATTGC	59.385	43.478	23.69	23.69	44.36	3.56
2023	15690	5.707298	CCTATTGGTTATCATAGGTTGGCAG	59.293	44.000	0.00	0.00	33.30	4.85
2217	15884	2.113139	AGGCACCGGAACCTTGTG	59.887	61.111	9.46	0.00	29.74	3.33
2393	16229	6.627087	ACCATGGTCCAAGAGGTATATATG	57.373	41.667	13.00	0.00	35.89	1.78
2394	16230	5.045578	ACCATGGTCCAAGAGGTATATATGC	60.046	44.000	13.00	0.00	35.89	3.14
2395	16231	5.045651	CCATGGTCCAAGAGGTATATATGCA	60.046	44.000	2.57	0.00	35.89	3.96
2396	16232	6.353342	CCATGGTCCAAGAGGTATATATGCAT	60.353	42.308	3.79	3.79	35.89	3.96
2411	16452	9.166173	GTATATATGCATTGTAATTCCAGCTCA	57.834	33.333	3.54	0.00	0.00	4.26
2423	16464	6.899393	AATTCCAGCTCAGACAACATTTAA	57.101	33.333	0.00	0.00	0.00	1.52
2424	16465	7.472334	AATTCCAGCTCAGACAACATTTAAT	57.528	32.000	0.00	0.00	0.00	1.40
2501	16546	3.951037	ACATGCTTTCACAAACAGGTACA	59.049	39.130	0.00	0.00	0.00	2.90
2619	16666	1.002468	CGTGTTGCTTGGGTCTTCAAG	60.002	52.381	0.00	0.00	44.97	3.02
2928	16975	1.094073	GGCGGCGAGTCTAGTACTGA	61.094	60.000	12.98	0.00	39.07	3.41
3164	17396	2.923035	AGCCGGGATGTATCGGGG	60.923	66.667	2.18	0.00	45.75	5.73
3193	17425	8.552296	AGGAATCATGTACTAGAAAGTTGGATT	58.448	33.333	0.00	0.00	37.15	3.01
3196	17428	9.520515	AATCATGTACTAGAAAGTTGGATTTGT	57.479	29.630	0.00	0.00	37.15	2.83
3197	17429	8.918202	TCATGTACTAGAAAGTTGGATTTGTT	57.082	30.769	0.00	0.00	37.15	2.83
3243	17481	6.538263	ACTTGAGAAGTGGCTAGATTTCTTT	58.462	36.000	0.00	0.00	41.01	2.52
3253	17491	5.819379	TGGCTAGATTTCTTTGATGCTAGTG	59.181	40.000	0.00	0.00	0.00	2.74
3342	17580	3.936203	GCCGGCCGGGATGTATCA	61.936	66.667	43.31	0.00	38.47	2.15
3521	18381	9.669353	GATATGCTTGTATGAAACTGTAAATGG	57.331	33.333	0.00	0.00	0.00	3.16
3563	18446	7.169035	ACGCAACAGGTATAATAACAATACG	57.831	36.000	0.00	0.00	31.76	3.06
3637	18520	0.107703	TGCCACCTCTTTATCTGCCG	60.108	55.000	0.00	0.00	0.00	5.69
3651	18534	2.282462	GCCGGCCCCCATATCAAG	60.282	66.667	18.11	0.00	0.00	3.02
3670	18554	6.806388	TCAAGCCATACAGTATAATGCATG	57.194	37.500	0.00	6.44	0.00	4.06
3895	18786	4.916041	TTTGGAGGATCTTCACACAGAT	57.084	40.909	7.20	0.00	36.12	2.90
3973	23885	3.792956	CGCTTCATCATTGGTTGTATTGC	59.207	43.478	0.00	0.00	0.00	3.56

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	0.036765	TGCTACGGTTGGATGACACC	60.037	55.000	0.00	0.00	0.00	4.16
142	1349	5.412640	TCCTTTTTCCGGAAAGAAAAACAC	58.587	37.500	27.48	0.00	45.89	3.32
143	1350	5.662674	TCCTTTTTCCGGAAAGAAAAACA	57.337	34.783	27.48	10.26	45.89	2.83
201	1454	6.227298	ACAAGTAACTCTATCAGGTCATGG	57.773	41.667	0.00	0.00	0.00	3.66
364	1675	3.820777	AGAAGAAGCAAAGCGTCAATC	57.179	42.857	7.60	5.46	39.36	2.67
441	1757	5.179555	GGTATCTTCCCAGCGAAATTGTATC	59.820	44.000	0.00	0.00	0.00	2.24
475	1791	0.436150	CGACATCGCTTGGCATATCG	59.564	55.000	0.00	0.00	29.94	2.92
529	1845	2.447443	ACATCTGCTCGGTAGTCTCAA	58.553	47.619	0.00	0.00	0.00	3.02
537	1853	3.195610	TCAAAGACATACATCTGCTCGGT	59.804	43.478	0.00	0.00	0.00	4.69
575	1891	1.843368	CCATTGTCAGCCAGAACCAT	58.157	50.000	0.00	0.00	0.00	3.55
595	1919	4.567971	TCAGGCATGCAATTTAAACTTGG	58.432	39.130	21.36	0.00	0.00	3.61
603	1927	3.872511	TCGATTTCAGGCATGCAATTT	57.127	38.095	21.36	0.00	0.00	1.82
604	1928	3.444742	TCTTCGATTTCAGGCATGCAATT	59.555	39.130	21.36	0.83	0.00	2.32
635	1960	1.000283	CAGATGGTGAGTCCTATCCGC	60.000	57.143	0.00	0.00	37.07	5.54
648	1973	0.251832	ACACTCCGGAGACAGATGGT	60.252	55.000	37.69	18.48	0.00	3.55
674	1999	9.810545	TGAGATAACAAACATACGAATCATGTA	57.189	29.630	0.00	0.00	35.58	2.29
699	2025	4.433413	CGTGTTCAGACAACGAATCAGATG	60.433	45.833	0.00	0.00	37.57	2.90
751	2078	4.202090	CCAAAGAGGGGTACGTGTATAGAC	60.202	50.000	0.00	0.00	0.00	2.59
753	2080	3.956199	TCCAAAGAGGGGTACGTGTATAG	59.044	47.826	0.00	0.00	38.24	1.31
773	2103	5.662674	AGTATATATTGCCCTCGTTCTCC	57.337	43.478	0.00	0.00	0.00	3.71
952	2301	4.018688	TGGAAGCTCGGCCTATATACTCTA	60.019	45.833	0.00	0.00	0.00	2.43
953	2302	3.245300	TGGAAGCTCGGCCTATATACTCT	60.245	47.826	0.00	0.00	0.00	3.24
973	2322	1.665735	CGGCGTCTTGTTTGGAATTGG	60.666	52.381	0.00	0.00	0.00	3.16
974	2323	1.685302	CGGCGTCTTGTTTGGAATTG	58.315	50.000	0.00	0.00	0.00	2.32
975	2324	0.039527	GCGGCGTCTTGTTTGGAATT	60.040	50.000	9.37	0.00	0.00	2.17
976	2325	1.169661	TGCGGCGTCTTGTTTGGAAT	61.170	50.000	9.37	0.00	0.00	3.01
1033	2397	6.423302	CAGAGGAGCATGAAGATGTGTATTAC	59.577	42.308	0.00	0.00	31.50	1.89
1034	2398	6.519382	CAGAGGAGCATGAAGATGTGTATTA	58.481	40.000	0.00	0.00	31.50	0.98
1036	2400	4.743045	GCAGAGGAGCATGAAGATGTGTAT	60.743	45.833	0.00	0.00	31.50	2.29
1037	2401	3.431346	GCAGAGGAGCATGAAGATGTGTA	60.431	47.826	0.00	0.00	31.50	2.90
1064	2431	1.202698	GGTGTGGAGACCATATGGAGC	60.203	57.143	28.77	18.31	35.28	4.70
1458	13752	2.177531	GCTCGTTCGTCGCCAGTA	59.822	61.111	0.00	0.00	39.67	2.74
1874	14225	7.285629	TGACTGGTCCAGTTATTATCTCTACTG	59.714	40.741	25.46	0.00	45.44	2.74
1919	14276	1.621107	GATGCCAACAAAGATGCACG	58.379	50.000	0.00	0.00	36.41	5.34
2023	15690	1.001745	GCGAATTCGTTGGTTGCACC	61.002	55.000	27.24	4.51	42.22	5.01
2217	15884	1.952296	CAGCACCAGCCTATCAATTCC	59.048	52.381	0.00	0.00	43.56	3.01
2393	16229	3.691118	TGTCTGAGCTGGAATTACAATGC	59.309	43.478	0.00	0.00	0.00	3.56
2394	16230	5.181811	TGTTGTCTGAGCTGGAATTACAATG	59.818	40.000	0.00	0.00	0.00	2.82
2395	16231	5.316167	TGTTGTCTGAGCTGGAATTACAAT	58.684	37.500	0.00	0.00	0.00	2.71
2396	16232	4.713553	TGTTGTCTGAGCTGGAATTACAA	58.286	39.130	0.00	0.00	0.00	2.41
2411	16452	7.592938	TGAATGAAGCGAATTAAATGTTGTCT	58.407	30.769	0.00	0.00	0.00	3.41
2423	16464	5.695851	AAACTGAGTTGAATGAAGCGAAT	57.304	34.783	0.00	0.00	0.00	3.34
2424	16465	5.499139	AAAACTGAGTTGAATGAAGCGAA	57.501	34.783	0.00	0.00	0.00	4.70
2473	16518	4.677584	TGTTTGTGAAAGCATGTAACCAC	58.322	39.130	0.00	0.00	0.00	4.16
2501	16546	2.158385	AGCCTAGGTCGAGGATGATCTT	60.158	50.000	11.31	0.00	39.15	2.40
2619	16666	1.202770	AGTCACCTAACTTGGCACCAC	60.203	52.381	0.00	0.00	0.00	4.16
2902	16949	0.952280	TAGACTCGCCGCCTATCAAG	59.048	55.000	0.00	0.00	0.00	3.02
2928	16975	0.884704	ACGCTCCATTTGTTGTCGCT	60.885	50.000	0.00	0.00	0.00	4.93
3076	17126	4.567857	ACTACAAAGGCTATGGTAGGGAT	58.432	43.478	18.46	2.34	37.99	3.85
3164	17396	7.278868	CCAACTTTCTAGTACATGATTCCTGTC	59.721	40.741	0.00	0.00	33.17	3.51
3325	17563	3.883744	CTGATACATCCCGGCCGGC	62.884	68.421	39.46	23.15	0.00	6.13
3326	17564	2.343758	CTGATACATCCCGGCCGG	59.656	66.667	37.99	37.99	0.00	6.13
3327	17565	1.754380	TTCCTGATACATCCCGGCCG	61.754	60.000	21.04	21.04	0.00	6.13
3328	17566	0.693049	ATTCCTGATACATCCCGGCC	59.307	55.000	0.00	0.00	0.00	6.13
3342	17580	9.440761	ACTTTCTAGTACATGATTCCTATTCCT	57.559	33.333	0.00	0.00	31.21	3.36
3521	18381	9.210426	CTGTTGCGTATTTTCTTGTGATATTAC	57.790	33.333	0.00	0.00	0.00	1.89
3637	18520	0.704076	TATGGCTTGATATGGGGGCC	59.296	55.000	0.00	0.00	42.73	5.80
3651	18534	7.381766	TGATTCATGCATTATACTGTATGGC	57.618	36.000	17.15	11.13	39.05	4.40
3708	18594	8.281194	GCTAACTCAAGGTGTAACTAAGTTTTC	58.719	37.037	3.81	0.00	36.74	2.29
3929	18821	6.042781	AGCGGGTCAATAAATAGGACATAAGA	59.957	38.462	0.00	0.00	33.26	2.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.