Multiple sequence alignment - TraesCS2D01G040400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G040400 chr2D 100.000 6454 0 0 1 6454 14725424 14731877 0.000000e+00 11919.0
1 TraesCS2D01G040400 chr2D 83.990 1624 217 27 3796 5385 14746071 14747685 0.000000e+00 1519.0
2 TraesCS2D01G040400 chr2D 98.741 794 7 1 5664 6454 49240267 49241060 0.000000e+00 1408.0
3 TraesCS2D01G040400 chr2D 87.217 1103 108 26 899 1986 14743928 14745012 0.000000e+00 1225.0
4 TraesCS2D01G040400 chr2D 84.086 465 63 7 1117 1581 14758219 14757766 7.680000e-119 438.0
5 TraesCS2D01G040400 chr2D 82.301 339 49 8 123 459 77633642 77633313 3.810000e-72 283.0
6 TraesCS2D01G040400 chr2D 77.778 261 49 9 167 424 37248546 37248292 1.120000e-32 152.0
7 TraesCS2D01G040400 chr2A 94.108 5227 188 38 481 5636 16817551 16822728 0.000000e+00 7836.0
8 TraesCS2D01G040400 chr2A 84.214 1628 208 30 3796 5385 16831476 16833092 0.000000e+00 1537.0
9 TraesCS2D01G040400 chr2A 84.634 1217 142 30 885 2073 16829280 16830479 0.000000e+00 1170.0
10 TraesCS2D01G040400 chr2A 81.149 1236 173 36 854 2071 16840419 16839226 0.000000e+00 937.0
11 TraesCS2D01G040400 chr2A 82.075 954 148 15 3796 4746 16826021 16826954 0.000000e+00 793.0
12 TraesCS2D01G040400 chr2A 84.967 459 57 9 3870 4328 16838315 16837869 7.630000e-124 455.0
13 TraesCS2D01G040400 chr2A 84.136 353 49 5 1683 2030 16824676 16825026 1.040000e-87 335.0
14 TraesCS2D01G040400 chr2A 77.925 453 41 22 899 1306 16823673 16824111 1.810000e-55 228.0
15 TraesCS2D01G040400 chr2A 85.246 122 18 0 5257 5378 16836597 16836476 6.790000e-25 126.0
16 TraesCS2D01G040400 chr2B 86.861 2131 169 51 640 2721 26490932 26493000 0.000000e+00 2281.0
17 TraesCS2D01G040400 chr2B 84.595 2272 250 48 3436 5665 26493463 26495676 0.000000e+00 2165.0
18 TraesCS2D01G040400 chr2B 83.837 1621 218 22 3796 5385 26508905 26510512 0.000000e+00 1502.0
19 TraesCS2D01G040400 chr2B 84.500 1200 138 28 886 2073 26506749 26507912 0.000000e+00 1142.0
20 TraesCS2D01G040400 chr2B 84.046 959 136 7 1117 2071 26530375 26529430 0.000000e+00 907.0
21 TraesCS2D01G040400 chr2B 82.513 955 143 17 3797 4743 26503257 26504195 0.000000e+00 817.0
22 TraesCS2D01G040400 chr2B 79.778 1083 193 16 989 2059 13783415 13784483 0.000000e+00 763.0
23 TraesCS2D01G040400 chr2B 81.062 998 154 21 4400 5378 26526900 26525919 0.000000e+00 763.0
24 TraesCS2D01G040400 chr2B 82.236 653 87 22 4755 5385 26521445 26522090 2.650000e-148 536.0
25 TraesCS2D01G040400 chr2B 88.193 415 47 2 3849 4262 26527535 26527122 1.620000e-135 494.0
26 TraesCS2D01G040400 chr2B 78.720 672 115 16 4709 5357 13797653 13798319 2.150000e-114 424.0
27 TraesCS2D01G040400 chr2B 80.370 433 46 15 899 1306 26496609 26497027 6.330000e-75 292.0
28 TraesCS2D01G040400 chr2B 83.444 302 45 3 4412 4713 13787354 13787650 6.370000e-70 276.0
29 TraesCS2D01G040400 chr2B 85.496 262 26 9 3042 3300 444489425 444489677 4.960000e-66 263.0
30 TraesCS2D01G040400 chr2B 100.000 29 0 0 8 36 26490735 26490763 3.000000e-03 54.7
31 TraesCS2D01G040400 chr5D 99.117 793 6 1 5663 6454 557423329 557422537 0.000000e+00 1424.0
32 TraesCS2D01G040400 chr5D 98.254 802 12 2 5655 6454 554307192 554307993 0.000000e+00 1402.0
33 TraesCS2D01G040400 chr3D 98.866 794 7 1 5663 6454 573097096 573097889 0.000000e+00 1415.0
34 TraesCS2D01G040400 chr3D 98.483 791 12 0 5664 6454 580313080 580312290 0.000000e+00 1395.0
35 TraesCS2D01G040400 chr7D 98.613 793 10 1 5663 6454 55144141 55144933 0.000000e+00 1402.0
36 TraesCS2D01G040400 chr7D 98.489 794 9 1 5664 6454 624412727 624411934 0.000000e+00 1397.0
37 TraesCS2D01G040400 chr7D 84.127 63 7 2 2847 2906 208212069 208212131 2.510000e-04 58.4
38 TraesCS2D01G040400 chr1D 98.485 792 11 1 5664 6454 361876491 361875700 0.000000e+00 1395.0
39 TraesCS2D01G040400 chr6D 98.363 794 11 2 5663 6454 12278824 12279617 0.000000e+00 1393.0
40 TraesCS2D01G040400 chr6D 85.286 367 39 12 65 427 33335342 33334987 1.320000e-96 364.0
41 TraesCS2D01G040400 chr4B 85.410 329 34 11 129 455 180760248 180759932 4.820000e-86 329.0
42 TraesCS2D01G040400 chrUn 85.821 268 21 14 3035 3297 285474066 285473811 1.070000e-67 268.0
43 TraesCS2D01G040400 chrUn 85.821 268 21 14 3035 3297 347527406 347527661 1.070000e-67 268.0
44 TraesCS2D01G040400 chrUn 82.692 208 30 3 5205 5412 359746957 359747158 5.140000e-41 180.0
45 TraesCS2D01G040400 chr6A 85.227 264 27 9 3037 3297 596891824 596891570 1.780000e-65 261.0
46 TraesCS2D01G040400 chr6B 84.906 265 30 7 3037 3299 2044114 2044370 6.420000e-65 259.0
47 TraesCS2D01G040400 chr6B 88.827 179 14 6 281 455 645475080 645475256 1.410000e-51 215.0
48 TraesCS2D01G040400 chr6B 79.545 132 20 7 195 321 534091596 534091467 3.210000e-13 87.9
49 TraesCS2D01G040400 chr7B 84.906 265 28 9 3037 3298 158072628 158072883 2.310000e-64 257.0
50 TraesCS2D01G040400 chr7B 83.516 182 16 7 276 454 649865638 649865808 2.410000e-34 158.0
51 TraesCS2D01G040400 chr7B 78.182 110 12 10 2796 2894 193330921 193330813 6.990000e-05 60.2
52 TraesCS2D01G040400 chr5A 84.758 269 28 10 3037 3302 487842701 487842959 2.310000e-64 257.0
53 TraesCS2D01G040400 chr1B 84.211 266 28 11 3037 3298 377191298 377191043 5.000000e-61 246.0
54 TraesCS2D01G040400 chr5B 78.788 231 36 10 232 458 676620419 676620198 6.750000e-30 143.0
55 TraesCS2D01G040400 chr7A 76.374 182 43 0 1761 1942 17328476 17328657 1.480000e-16 99.0
56 TraesCS2D01G040400 chr4A 74.146 205 53 0 1761 1965 715816982 715817186 1.150000e-12 86.1
57 TraesCS2D01G040400 chr4A 82.558 86 15 0 1880 1965 715809006 715809091 6.940000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G040400 chr2D 14725424 14731877 6453 False 11919.000000 11919 100.000000 1 6454 1 chr2D.!!$F1 6453
1 TraesCS2D01G040400 chr2D 49240267 49241060 793 False 1408.000000 1408 98.741000 5664 6454 1 chr2D.!!$F2 790
2 TraesCS2D01G040400 chr2D 14743928 14747685 3757 False 1372.000000 1519 85.603500 899 5385 2 chr2D.!!$F3 4486
3 TraesCS2D01G040400 chr2A 16817551 16833092 15541 False 1983.166667 7836 84.515333 481 5636 6 chr2A.!!$F1 5155
4 TraesCS2D01G040400 chr2A 16836476 16840419 3943 True 506.000000 937 83.787333 854 5378 3 chr2A.!!$R1 4524
5 TraesCS2D01G040400 chr2B 26490735 26497027 6292 False 1198.175000 2281 87.956500 8 5665 4 chr2B.!!$F5 5657
6 TraesCS2D01G040400 chr2B 26503257 26510512 7255 False 1153.666667 1502 83.616667 886 5385 3 chr2B.!!$F6 4499
7 TraesCS2D01G040400 chr2B 26525919 26530375 4456 True 721.333333 907 84.433667 1117 5378 3 chr2B.!!$R1 4261
8 TraesCS2D01G040400 chr2B 26521445 26522090 645 False 536.000000 536 82.236000 4755 5385 1 chr2B.!!$F2 630
9 TraesCS2D01G040400 chr2B 13783415 13787650 4235 False 519.500000 763 81.611000 989 4713 2 chr2B.!!$F4 3724
10 TraesCS2D01G040400 chr2B 13797653 13798319 666 False 424.000000 424 78.720000 4709 5357 1 chr2B.!!$F1 648
11 TraesCS2D01G040400 chr5D 557422537 557423329 792 True 1424.000000 1424 99.117000 5663 6454 1 chr5D.!!$R1 791
12 TraesCS2D01G040400 chr5D 554307192 554307993 801 False 1402.000000 1402 98.254000 5655 6454 1 chr5D.!!$F1 799
13 TraesCS2D01G040400 chr3D 573097096 573097889 793 False 1415.000000 1415 98.866000 5663 6454 1 chr3D.!!$F1 791
14 TraesCS2D01G040400 chr3D 580312290 580313080 790 True 1395.000000 1395 98.483000 5664 6454 1 chr3D.!!$R1 790
15 TraesCS2D01G040400 chr7D 55144141 55144933 792 False 1402.000000 1402 98.613000 5663 6454 1 chr7D.!!$F1 791
16 TraesCS2D01G040400 chr7D 624411934 624412727 793 True 1397.000000 1397 98.489000 5664 6454 1 chr7D.!!$R1 790
17 TraesCS2D01G040400 chr1D 361875700 361876491 791 True 1395.000000 1395 98.485000 5664 6454 1 chr1D.!!$R1 790
18 TraesCS2D01G040400 chr6D 12278824 12279617 793 False 1393.000000 1393 98.363000 5663 6454 1 chr6D.!!$F1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 835 0.100682 GCGTGCGAGACAGGAAGATA 59.899 55.000 0.00 0.00 36.20 1.98 F
1419 4042 1.376037 GGTGCTCGACCTTCTTGGG 60.376 63.158 0.00 0.00 42.25 4.12 F
1641 4276 2.031163 GCCACCTTCGCAGTCACT 59.969 61.111 0.00 0.00 0.00 3.41 F
3293 8295 2.304761 ACTACATTGTGGAACGGATGGT 59.695 45.455 7.20 0.00 42.39 3.55 F
4493 10859 1.818363 GCTTACCTACCAAGCCGGC 60.818 63.158 21.89 21.89 42.08 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 4339 1.379044 AAGAAGGCGGCCATCCTTG 60.379 57.895 25.97 0.00 43.54 3.61 R
3276 8278 1.533625 ACACCATCCGTTCCACAATG 58.466 50.000 0.00 0.00 0.00 2.82 R
3368 8370 4.408921 TCTTGGATGGTCCGAATAACTCAT 59.591 41.667 0.00 0.00 40.17 2.90 R
4521 10887 0.246635 CCATGAACCTCGTCGTCCTT 59.753 55.000 0.00 0.00 0.00 3.36 R
5645 12229 1.003223 GTGTTTATAATGGGGCGCGAC 60.003 52.381 12.10 6.99 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.441913 CCAATAATGCAACAGGGAATGACC 60.442 45.833 0.00 0.00 38.08 4.02
38 39 2.537633 ATGCAACAGGGAATGACCAT 57.462 45.000 0.00 0.00 41.20 3.55
40 41 1.355381 TGCAACAGGGAATGACCATCT 59.645 47.619 0.00 0.00 41.20 2.90
42 43 2.618816 GCAACAGGGAATGACCATCTCA 60.619 50.000 0.00 0.00 41.20 3.27
44 45 4.686944 GCAACAGGGAATGACCATCTCATA 60.687 45.833 0.00 0.00 38.82 2.15
47 48 4.723789 ACAGGGAATGACCATCTCATAAGT 59.276 41.667 0.00 0.00 38.82 2.24
50 51 6.268617 CAGGGAATGACCATCTCATAAGTAGA 59.731 42.308 0.00 0.00 38.82 2.59
51 52 6.496565 AGGGAATGACCATCTCATAAGTAGAG 59.503 42.308 0.00 0.00 38.82 2.43
53 54 6.014669 GGAATGACCATCTCATAAGTAGAGCT 60.015 42.308 0.00 0.00 38.82 4.09
55 56 5.449553 TGACCATCTCATAAGTAGAGCTGA 58.550 41.667 0.00 0.00 32.48 4.26
56 57 6.073981 TGACCATCTCATAAGTAGAGCTGAT 58.926 40.000 0.00 0.00 32.48 2.90
59 60 7.215789 ACCATCTCATAAGTAGAGCTGATTTG 58.784 38.462 0.00 0.00 32.48 2.32
62 63 6.810911 TCTCATAAGTAGAGCTGATTTGGAC 58.189 40.000 0.00 0.00 33.15 4.02
66 67 8.704668 TCATAAGTAGAGCTGATTTGGACAATA 58.295 33.333 0.00 0.00 0.00 1.90
69 70 8.814038 AAGTAGAGCTGATTTGGACAATAATT 57.186 30.769 0.00 0.00 0.00 1.40
71 72 8.049117 AGTAGAGCTGATTTGGACAATAATTCA 58.951 33.333 0.00 0.00 0.00 2.57
73 74 7.542025 AGAGCTGATTTGGACAATAATTCAAC 58.458 34.615 0.00 0.00 0.00 3.18
75 76 5.812127 GCTGATTTGGACAATAATTCAACCC 59.188 40.000 0.00 0.00 0.00 4.11
76 77 5.960113 TGATTTGGACAATAATTCAACCCG 58.040 37.500 0.00 0.00 0.00 5.28
78 79 3.722908 TGGACAATAATTCAACCCGGA 57.277 42.857 0.73 0.00 0.00 5.14
79 80 4.035612 TGGACAATAATTCAACCCGGAA 57.964 40.909 0.73 0.00 0.00 4.30
80 81 3.759618 TGGACAATAATTCAACCCGGAAC 59.240 43.478 0.73 0.00 0.00 3.62
82 83 3.093814 ACAATAATTCAACCCGGAACCC 58.906 45.455 0.73 0.00 0.00 4.11
95 96 1.375908 GAACCCGAGCTCACATGCA 60.376 57.895 15.40 0.00 34.99 3.96
96 97 1.639298 GAACCCGAGCTCACATGCAC 61.639 60.000 15.40 0.00 34.99 4.57
98 99 2.267006 CCGAGCTCACATGCACCT 59.733 61.111 15.40 0.00 34.99 4.00
99 100 2.104859 CCGAGCTCACATGCACCTG 61.105 63.158 15.40 0.00 34.99 4.00
100 101 2.104859 CGAGCTCACATGCACCTGG 61.105 63.158 15.40 0.00 34.99 4.45
101 102 1.002868 GAGCTCACATGCACCTGGT 60.003 57.895 9.40 0.00 34.99 4.00
102 103 1.303074 AGCTCACATGCACCTGGTG 60.303 57.895 22.46 22.46 36.51 4.17
103 104 1.302752 GCTCACATGCACCTGGTGA 60.303 57.895 30.23 15.26 39.09 4.02
105 106 1.830279 CTCACATGCACCTGGTGAAT 58.170 50.000 30.23 22.86 40.67 2.57
106 107 2.940971 GCTCACATGCACCTGGTGAATA 60.941 50.000 30.23 15.21 40.67 1.75
107 108 2.941064 CTCACATGCACCTGGTGAATAG 59.059 50.000 30.23 19.59 40.67 1.73
109 110 3.517500 TCACATGCACCTGGTGAATAGTA 59.482 43.478 30.23 10.60 38.50 1.82
111 112 4.699735 CACATGCACCTGGTGAATAGTAAA 59.300 41.667 30.23 4.91 35.23 2.01
112 113 5.182950 CACATGCACCTGGTGAATAGTAAAA 59.817 40.000 30.23 3.91 35.23 1.52
115 116 7.613801 ACATGCACCTGGTGAATAGTAAAATAA 59.386 33.333 30.23 0.00 35.23 1.40
116 117 8.632679 CATGCACCTGGTGAATAGTAAAATAAT 58.367 33.333 30.23 0.00 35.23 1.28
154 155 8.572855 AAAAATCCAAATTCTTTTTGTGGTGA 57.427 26.923 0.00 0.00 32.46 4.02
158 159 6.940739 TCCAAATTCTTTTTGTGGTGAAAGA 58.059 32.000 0.00 0.00 39.42 2.52
161 162 6.849588 AATTCTTTTTGTGGTGAAAGATGC 57.150 33.333 0.00 0.00 40.44 3.91
165 166 4.933505 TTTTGTGGTGAAAGATGCATGA 57.066 36.364 2.46 0.00 0.00 3.07
166 167 4.508461 TTTGTGGTGAAAGATGCATGAG 57.492 40.909 2.46 0.00 0.00 2.90
167 168 3.144657 TGTGGTGAAAGATGCATGAGT 57.855 42.857 2.46 0.00 0.00 3.41
168 169 2.815503 TGTGGTGAAAGATGCATGAGTG 59.184 45.455 2.46 0.00 0.00 3.51
169 170 2.163010 GTGGTGAAAGATGCATGAGTGG 59.837 50.000 2.46 0.00 0.00 4.00
170 171 1.747355 GGTGAAAGATGCATGAGTGGG 59.253 52.381 2.46 0.00 0.00 4.61
171 172 2.440409 GTGAAAGATGCATGAGTGGGT 58.560 47.619 2.46 0.00 0.00 4.51
175 176 2.343484 AGATGCATGAGTGGGTGATG 57.657 50.000 2.46 0.00 0.00 3.07
176 177 1.562942 AGATGCATGAGTGGGTGATGT 59.437 47.619 2.46 0.00 0.00 3.06
177 178 2.025605 AGATGCATGAGTGGGTGATGTT 60.026 45.455 2.46 0.00 0.00 2.71
179 180 0.729116 GCATGAGTGGGTGATGTTCG 59.271 55.000 0.00 0.00 0.00 3.95
186 187 0.109532 TGGGTGATGTTCGAGCCAAA 59.890 50.000 0.00 0.00 36.80 3.28
187 188 1.271871 TGGGTGATGTTCGAGCCAAAT 60.272 47.619 0.00 0.00 36.80 2.32
188 189 1.818674 GGGTGATGTTCGAGCCAAATT 59.181 47.619 0.00 0.00 0.00 1.82
190 191 3.501950 GGTGATGTTCGAGCCAAATTTC 58.498 45.455 0.00 0.00 0.00 2.17
191 192 3.057596 GGTGATGTTCGAGCCAAATTTCA 60.058 43.478 0.00 0.00 0.00 2.69
194 195 4.154737 TGATGTTCGAGCCAAATTTCAGAG 59.845 41.667 0.00 0.00 0.00 3.35
195 196 2.226437 TGTTCGAGCCAAATTTCAGAGC 59.774 45.455 0.00 0.00 0.00 4.09
196 197 2.183478 TCGAGCCAAATTTCAGAGCA 57.817 45.000 0.00 0.00 0.00 4.26
197 198 2.715046 TCGAGCCAAATTTCAGAGCAT 58.285 42.857 0.00 0.00 0.00 3.79
198 199 3.084039 TCGAGCCAAATTTCAGAGCATT 58.916 40.909 0.00 0.00 0.00 3.56
199 200 3.507233 TCGAGCCAAATTTCAGAGCATTT 59.493 39.130 0.00 0.00 0.00 2.32
200 201 4.699735 TCGAGCCAAATTTCAGAGCATTTA 59.300 37.500 0.00 0.00 0.00 1.40
201 202 5.032863 CGAGCCAAATTTCAGAGCATTTAG 58.967 41.667 0.00 0.00 0.00 1.85
202 203 5.334724 AGCCAAATTTCAGAGCATTTAGG 57.665 39.130 0.00 0.00 0.00 2.69
204 205 4.621274 GCCAAATTTCAGAGCATTTAGGCA 60.621 41.667 16.20 0.00 36.99 4.75
206 207 6.110707 CCAAATTTCAGAGCATTTAGGCATT 58.889 36.000 0.00 0.00 35.83 3.56
207 208 6.596497 CCAAATTTCAGAGCATTTAGGCATTT 59.404 34.615 0.00 0.00 35.83 2.32
208 209 7.413657 CCAAATTTCAGAGCATTTAGGCATTTG 60.414 37.037 0.00 0.00 33.25 2.32
209 210 5.981088 TTTCAGAGCATTTAGGCATTTGA 57.019 34.783 0.00 0.00 35.83 2.69
210 211 5.571784 TTCAGAGCATTTAGGCATTTGAG 57.428 39.130 0.00 0.00 35.83 3.02
211 212 3.379372 TCAGAGCATTTAGGCATTTGAGC 59.621 43.478 0.00 0.00 35.83 4.26
212 213 3.129813 CAGAGCATTTAGGCATTTGAGCA 59.870 43.478 0.00 0.00 35.83 4.26
213 214 3.380637 AGAGCATTTAGGCATTTGAGCAG 59.619 43.478 0.00 0.00 35.83 4.24
215 216 2.159142 GCATTTAGGCATTTGAGCAGCT 60.159 45.455 0.00 0.00 35.83 4.24
216 217 3.703420 CATTTAGGCATTTGAGCAGCTC 58.297 45.455 16.21 16.21 35.83 4.09
217 218 2.795231 TTAGGCATTTGAGCAGCTCT 57.205 45.000 23.15 3.66 35.83 4.09
218 219 2.795231 TAGGCATTTGAGCAGCTCTT 57.205 45.000 23.15 5.67 35.83 2.85
219 220 2.795231 AGGCATTTGAGCAGCTCTTA 57.205 45.000 23.15 11.30 35.83 2.10
221 222 1.065251 GGCATTTGAGCAGCTCTTAGC 59.935 52.381 23.15 19.21 42.84 3.09
257 258 8.514330 AAATCAGGTCTAAACAGTACAAAACA 57.486 30.769 0.00 0.00 0.00 2.83
258 259 7.730364 ATCAGGTCTAAACAGTACAAAACAG 57.270 36.000 0.00 0.00 0.00 3.16
259 260 6.646267 TCAGGTCTAAACAGTACAAAACAGT 58.354 36.000 0.00 0.00 0.00 3.55
260 261 7.784037 TCAGGTCTAAACAGTACAAAACAGTA 58.216 34.615 0.00 0.00 0.00 2.74
261 262 8.259411 TCAGGTCTAAACAGTACAAAACAGTAA 58.741 33.333 0.00 0.00 0.00 2.24
262 263 8.885722 CAGGTCTAAACAGTACAAAACAGTAAA 58.114 33.333 0.00 0.00 0.00 2.01
263 264 8.886719 AGGTCTAAACAGTACAAAACAGTAAAC 58.113 33.333 0.00 0.00 0.00 2.01
270 271 9.968870 AACAGTACAAAACAGTAAACTTTTTCA 57.031 25.926 0.00 0.00 0.00 2.69
271 272 9.401873 ACAGTACAAAACAGTAAACTTTTTCAC 57.598 29.630 0.00 0.00 0.00 3.18
276 277 9.361315 ACAAAACAGTAAACTTTTTCACATACC 57.639 29.630 0.00 0.00 0.00 2.73
278 279 7.891498 AACAGTAAACTTTTTCACATACCCT 57.109 32.000 0.00 0.00 0.00 4.34
280 281 8.983702 ACAGTAAACTTTTTCACATACCCTAA 57.016 30.769 0.00 0.00 0.00 2.69
281 282 9.582648 ACAGTAAACTTTTTCACATACCCTAAT 57.417 29.630 0.00 0.00 0.00 1.73
287 288 9.758651 AACTTTTTCACATACCCTAATTTTGTC 57.241 29.630 0.00 0.00 0.00 3.18
310 311 4.422073 TTTTTGCTGAAGTCTCCTCAGA 57.578 40.909 5.83 0.00 33.65 3.27
311 312 4.630644 TTTTGCTGAAGTCTCCTCAGAT 57.369 40.909 5.83 0.00 33.65 2.90
312 313 3.606595 TTGCTGAAGTCTCCTCAGATG 57.393 47.619 5.83 0.00 33.65 2.90
313 314 2.533916 TGCTGAAGTCTCCTCAGATGT 58.466 47.619 5.83 0.00 33.65 3.06
314 315 2.495270 TGCTGAAGTCTCCTCAGATGTC 59.505 50.000 5.83 0.00 33.65 3.06
317 318 3.510459 TGAAGTCTCCTCAGATGTCCAA 58.490 45.455 0.00 0.00 0.00 3.53
318 319 3.903714 TGAAGTCTCCTCAGATGTCCAAA 59.096 43.478 0.00 0.00 0.00 3.28
319 320 4.533707 TGAAGTCTCCTCAGATGTCCAAAT 59.466 41.667 0.00 0.00 0.00 2.32
320 321 4.484537 AGTCTCCTCAGATGTCCAAATG 57.515 45.455 0.00 0.00 0.00 2.32
322 323 4.288105 AGTCTCCTCAGATGTCCAAATGTT 59.712 41.667 0.00 0.00 0.00 2.71
323 324 4.633565 GTCTCCTCAGATGTCCAAATGTTC 59.366 45.833 0.00 0.00 0.00 3.18
325 326 4.836825 TCCTCAGATGTCCAAATGTTCTC 58.163 43.478 0.00 0.00 0.00 2.87
326 327 4.286808 TCCTCAGATGTCCAAATGTTCTCA 59.713 41.667 0.00 0.00 0.00 3.27
327 328 5.005740 CCTCAGATGTCCAAATGTTCTCAA 58.994 41.667 0.00 0.00 0.00 3.02
328 329 5.474532 CCTCAGATGTCCAAATGTTCTCAAA 59.525 40.000 0.00 0.00 0.00 2.69
329 330 6.152323 CCTCAGATGTCCAAATGTTCTCAAAT 59.848 38.462 0.00 0.00 0.00 2.32
330 331 7.309621 CCTCAGATGTCCAAATGTTCTCAAATT 60.310 37.037 0.00 0.00 0.00 1.82
331 332 7.954835 TCAGATGTCCAAATGTTCTCAAATTT 58.045 30.769 0.00 0.00 0.00 1.82
332 333 7.868922 TCAGATGTCCAAATGTTCTCAAATTTG 59.131 33.333 12.15 12.15 41.41 2.32
337 338 5.009048 CAAATGTTCTCAAATTTGGCACG 57.991 39.130 17.90 5.11 39.19 5.34
338 339 4.582701 AATGTTCTCAAATTTGGCACGA 57.417 36.364 17.90 7.20 0.00 4.35
339 340 4.582701 ATGTTCTCAAATTTGGCACGAA 57.417 36.364 17.90 12.09 0.00 3.85
341 342 3.129462 TGTTCTCAAATTTGGCACGAACA 59.871 39.130 24.95 24.95 37.51 3.18
344 345 3.567585 TCTCAAATTTGGCACGAACATCA 59.432 39.130 17.90 0.00 0.00 3.07
345 346 3.637432 TCAAATTTGGCACGAACATCAC 58.363 40.909 17.90 0.00 0.00 3.06
346 347 2.330231 AATTTGGCACGAACATCACG 57.670 45.000 0.00 0.00 0.00 4.35
347 348 0.109781 ATTTGGCACGAACATCACGC 60.110 50.000 0.00 0.00 0.00 5.34
348 349 1.440145 TTTGGCACGAACATCACGCA 61.440 50.000 0.00 0.00 0.00 5.24
349 350 1.233950 TTGGCACGAACATCACGCAT 61.234 50.000 0.00 0.00 0.00 4.73
350 351 1.233950 TGGCACGAACATCACGCATT 61.234 50.000 0.00 0.00 0.00 3.56
352 353 0.165727 GCACGAACATCACGCATTCA 59.834 50.000 0.00 0.00 0.00 2.57
353 354 1.399599 GCACGAACATCACGCATTCAA 60.400 47.619 0.00 0.00 0.00 2.69
354 355 2.728846 GCACGAACATCACGCATTCAAT 60.729 45.455 0.00 0.00 0.00 2.57
355 356 3.093574 CACGAACATCACGCATTCAATC 58.906 45.455 0.00 0.00 0.00 2.67
356 357 2.741517 ACGAACATCACGCATTCAATCA 59.258 40.909 0.00 0.00 0.00 2.57
357 358 3.374988 ACGAACATCACGCATTCAATCAT 59.625 39.130 0.00 0.00 0.00 2.45
358 359 3.964347 CGAACATCACGCATTCAATCATC 59.036 43.478 0.00 0.00 0.00 2.92
359 360 4.260497 CGAACATCACGCATTCAATCATCT 60.260 41.667 0.00 0.00 0.00 2.90
360 361 5.571784 AACATCACGCATTCAATCATCTT 57.428 34.783 0.00 0.00 0.00 2.40
361 362 5.571784 ACATCACGCATTCAATCATCTTT 57.428 34.783 0.00 0.00 0.00 2.52
362 363 5.575957 ACATCACGCATTCAATCATCTTTC 58.424 37.500 0.00 0.00 0.00 2.62
363 364 5.124297 ACATCACGCATTCAATCATCTTTCA 59.876 36.000 0.00 0.00 0.00 2.69
364 365 4.973396 TCACGCATTCAATCATCTTTCAC 58.027 39.130 0.00 0.00 0.00 3.18
365 366 4.100529 CACGCATTCAATCATCTTTCACC 58.899 43.478 0.00 0.00 0.00 4.02
366 367 3.758023 ACGCATTCAATCATCTTTCACCA 59.242 39.130 0.00 0.00 0.00 4.17
369 370 5.472148 GCATTCAATCATCTTTCACCACAA 58.528 37.500 0.00 0.00 0.00 3.33
370 371 5.927689 GCATTCAATCATCTTTCACCACAAA 59.072 36.000 0.00 0.00 0.00 2.83
372 373 7.041916 GCATTCAATCATCTTTCACCACAAAAA 60.042 33.333 0.00 0.00 0.00 1.94
429 430 2.752354 TGATTTTACTGTTCATGCCCGG 59.248 45.455 0.00 0.00 0.00 5.73
430 431 2.279935 TTTTACTGTTCATGCCCGGT 57.720 45.000 0.00 0.00 0.00 5.28
431 432 1.816074 TTTACTGTTCATGCCCGGTC 58.184 50.000 0.00 0.00 0.00 4.79
433 434 1.855295 TACTGTTCATGCCCGGTCTA 58.145 50.000 0.00 0.00 0.00 2.59
434 435 0.981183 ACTGTTCATGCCCGGTCTAA 59.019 50.000 0.00 0.00 0.00 2.10
438 439 2.213499 GTTCATGCCCGGTCTAATCTG 58.787 52.381 0.00 0.00 0.00 2.90
439 440 1.788229 TCATGCCCGGTCTAATCTGA 58.212 50.000 0.00 0.00 0.00 3.27
440 441 1.688735 TCATGCCCGGTCTAATCTGAG 59.311 52.381 0.00 0.00 0.00 3.35
441 442 0.394565 ATGCCCGGTCTAATCTGAGC 59.605 55.000 0.00 0.00 0.00 4.26
443 444 1.749033 CCCGGTCTAATCTGAGCCC 59.251 63.158 0.00 0.00 0.00 5.19
446 447 1.749033 GGTCTAATCTGAGCCCGGG 59.251 63.158 19.09 19.09 0.00 5.73
448 449 0.676736 GTCTAATCTGAGCCCGGGAG 59.323 60.000 29.31 13.93 0.00 4.30
449 450 1.115930 TCTAATCTGAGCCCGGGAGC 61.116 60.000 29.31 16.09 0.00 4.70
450 451 2.105806 CTAATCTGAGCCCGGGAGCC 62.106 65.000 29.31 12.80 0.00 4.70
454 455 3.338250 TGAGCCCGGGAGCCAAAT 61.338 61.111 29.31 0.00 0.00 2.32
455 456 2.517166 GAGCCCGGGAGCCAAATC 60.517 66.667 29.31 2.84 0.00 2.17
456 457 4.489771 AGCCCGGGAGCCAAATCG 62.490 66.667 29.31 0.00 0.00 3.34
458 459 4.489771 CCCGGGAGCCAAATCGCT 62.490 66.667 18.48 0.00 43.42 4.93
459 460 2.438434 CCGGGAGCCAAATCGCTT 60.438 61.111 0.00 0.00 39.87 4.68
460 461 2.046285 CCGGGAGCCAAATCGCTTT 61.046 57.895 0.00 0.00 39.87 3.51
461 462 1.595093 CCGGGAGCCAAATCGCTTTT 61.595 55.000 0.00 0.00 39.87 2.27
462 463 0.243636 CGGGAGCCAAATCGCTTTTT 59.756 50.000 0.00 0.00 39.87 1.94
487 488 2.804527 GTTTTGGACTACAACCGGAGAC 59.195 50.000 9.46 0.00 39.19 3.36
488 489 1.707106 TTGGACTACAACCGGAGACA 58.293 50.000 9.46 0.00 33.18 3.41
503 504 1.154338 GACAGCATGCTTCGTGTGC 60.154 57.895 19.98 4.69 42.53 4.57
510 511 2.396601 CATGCTTCGTGTGCAAAACAT 58.603 42.857 0.00 0.00 44.01 2.71
514 515 4.424626 TGCTTCGTGTGCAAAACATAAAA 58.575 34.783 0.00 0.00 41.97 1.52
515 516 5.046529 TGCTTCGTGTGCAAAACATAAAAT 58.953 33.333 0.00 0.00 41.97 1.82
519 520 7.735586 GCTTCGTGTGCAAAACATAAAATTTAG 59.264 33.333 0.00 0.00 41.97 1.85
525 526 7.384660 TGTGCAAAACATAAAATTTAGCTCCTG 59.615 33.333 0.00 0.00 32.36 3.86
550 551 5.794894 TCTTGTTGGAGAGGTCATTACTTC 58.205 41.667 0.00 0.00 32.02 3.01
553 554 2.176045 TGGAGAGGTCATTACTTCGCA 58.824 47.619 0.00 0.00 36.84 5.10
564 573 5.179555 GTCATTACTTCGCACTTTTTCTCCT 59.820 40.000 0.00 0.00 0.00 3.69
572 581 3.604772 CGCACTTTTTCTCCTCTTGAACG 60.605 47.826 0.00 0.00 0.00 3.95
578 587 5.734855 TTTTCTCCTCTTGAACGAACTTG 57.265 39.130 0.00 0.00 0.00 3.16
590 599 2.631267 ACGAACTTGGTAACGGTTTGT 58.369 42.857 0.00 4.18 41.52 2.83
602 611 1.577328 CGGTTTGTTGGCGATGCTCT 61.577 55.000 0.00 0.00 0.00 4.09
611 620 0.654683 GGCGATGCTCTTGTCATCAC 59.345 55.000 4.22 0.00 40.11 3.06
630 639 8.287503 GTCATCACAAATTTAAAAGACTACCGT 58.712 33.333 0.00 0.00 0.00 4.83
634 643 5.179929 ACAAATTTAAAAGACTACCGTCCGG 59.820 40.000 3.76 3.76 41.16 5.14
638 647 0.896940 AAAGACTACCGTCCGGCTCA 60.897 55.000 5.47 0.00 41.16 4.26
646 655 0.378257 CCGTCCGGCTCATTGATTTG 59.622 55.000 0.00 0.00 0.00 2.32
663 672 4.527427 TGATTTGTCATTCCCAGCAAATGA 59.473 37.500 6.15 0.00 40.34 2.57
673 685 1.250328 CAGCAAATGAGACCTGCCAA 58.750 50.000 0.00 0.00 36.73 4.52
679 691 0.610232 ATGAGACCTGCCAACTTGCC 60.610 55.000 0.00 0.00 0.00 4.52
683 695 0.324943 GACCTGCCAACTTGCCTCTA 59.675 55.000 0.00 0.00 0.00 2.43
684 696 0.326264 ACCTGCCAACTTGCCTCTAG 59.674 55.000 0.00 0.00 0.00 2.43
686 698 1.677217 CCTGCCAACTTGCCTCTAGTC 60.677 57.143 0.00 0.00 0.00 2.59
692 704 2.464157 ACTTGCCTCTAGTCAGTTGC 57.536 50.000 0.00 0.00 0.00 4.17
744 756 6.173339 CAATTCTACAAGGACAGGTACATGT 58.827 40.000 13.90 13.90 35.68 3.21
750 762 1.825474 AGGACAGGTACATGTTCTCCG 59.175 52.381 15.72 4.58 33.51 4.63
764 776 7.106239 ACATGTTCTCCGATCTTTAGTCAATT 58.894 34.615 0.00 0.00 0.00 2.32
765 777 7.607991 ACATGTTCTCCGATCTTTAGTCAATTT 59.392 33.333 0.00 0.00 0.00 1.82
766 778 7.979444 TGTTCTCCGATCTTTAGTCAATTTT 57.021 32.000 0.00 0.00 0.00 1.82
767 779 9.667107 ATGTTCTCCGATCTTTAGTCAATTTTA 57.333 29.630 0.00 0.00 0.00 1.52
768 780 9.496873 TGTTCTCCGATCTTTAGTCAATTTTAA 57.503 29.630 0.00 0.00 0.00 1.52
771 783 9.938280 TCTCCGATCTTTAGTCAATTTTAAAGA 57.062 29.630 14.27 14.27 45.05 2.52
823 835 0.100682 GCGTGCGAGACAGGAAGATA 59.899 55.000 0.00 0.00 36.20 1.98
835 847 5.122396 AGACAGGAAGATAAACGTGATTTGC 59.878 40.000 0.00 0.00 0.00 3.68
842 854 7.061789 GGAAGATAAACGTGATTTGCGAAAAAT 59.938 33.333 0.00 0.00 0.00 1.82
843 855 7.264448 AGATAAACGTGATTTGCGAAAAATG 57.736 32.000 0.00 0.00 0.00 2.32
844 856 3.769009 AACGTGATTTGCGAAAAATGC 57.231 38.095 0.00 0.00 0.00 3.56
845 857 2.736978 ACGTGATTTGCGAAAAATGCA 58.263 38.095 0.00 0.00 41.38 3.96
918 3526 4.643334 GGGGTATAAAATCGCCAAGTCTTT 59.357 41.667 0.00 0.00 36.79 2.52
932 3540 3.199880 AGTCTTTTGGTCTGGTCACAG 57.800 47.619 0.00 0.00 46.30 3.66
955 3563 5.470437 AGAAACAAACTAGCTAGAAGCAACC 59.530 40.000 27.45 10.70 45.56 3.77
957 3565 4.065789 ACAAACTAGCTAGAAGCAACCAC 58.934 43.478 27.45 0.00 45.56 4.16
1032 3648 2.028203 GGATCTCCCAGCTAGCAAGATC 60.028 54.545 25.67 25.67 40.93 2.75
1214 3837 3.160047 CGGAGGAGCCTGGCAGAT 61.160 66.667 22.65 3.62 0.00 2.90
1290 3913 4.802051 TACCGCCGGTACCTCGCT 62.802 66.667 12.92 3.60 37.09 4.93
1419 4042 1.376037 GGTGCTCGACCTTCTTGGG 60.376 63.158 0.00 0.00 42.25 4.12
1614 4249 2.738587 AGGAGAAGATCGAGGTGCTA 57.261 50.000 0.00 0.00 0.00 3.49
1618 4253 3.068873 GGAGAAGATCGAGGTGCTAATGT 59.931 47.826 0.00 0.00 0.00 2.71
1641 4276 2.031163 GCCACCTTCGCAGTCACT 59.969 61.111 0.00 0.00 0.00 3.41
2059 4712 7.984422 ATCAAGAACATGTGTGATAGTTTCA 57.016 32.000 14.94 0.00 0.00 2.69
2292 6585 6.038603 TGAAAGCCTCATGGAGAAAAATATCG 59.961 38.462 0.00 0.00 34.57 2.92
2554 7517 4.702131 ACAAGTTGAGGATACCTTGATTGC 59.298 41.667 10.54 0.00 38.11 3.56
2824 7824 5.297029 ACACAACTAAACAAGGAAAGAGAGC 59.703 40.000 0.00 0.00 0.00 4.09
2885 7885 8.132995 AGTATGTGACATGCATGACAATAAATG 58.867 33.333 32.75 4.22 34.54 2.32
2919 7919 5.815233 ACCAAGCTATGATACTATGCACT 57.185 39.130 0.00 0.00 0.00 4.40
2920 7920 5.545588 ACCAAGCTATGATACTATGCACTG 58.454 41.667 0.00 0.00 0.00 3.66
2922 7922 6.267699 ACCAAGCTATGATACTATGCACTGTA 59.732 38.462 0.00 0.00 0.00 2.74
3038 8038 3.581755 TGACGCGGGCATTTATATACTC 58.418 45.455 12.47 0.00 0.00 2.59
3043 8043 4.034048 CGCGGGCATTTATATACTCCATTC 59.966 45.833 0.00 0.00 0.00 2.67
3068 8068 9.657419 TCCATAATGTAGTGCATATAGATTGTG 57.343 33.333 15.28 15.28 36.67 3.33
3096 8097 9.628746 TTAACTCAAACTTTACAAACTTTGACC 57.371 29.630 8.55 0.00 31.80 4.02
3229 8231 9.809096 ATGTATGTATCTGTCTCTACAAACTTG 57.191 33.333 0.00 0.00 34.49 3.16
3293 8295 2.304761 ACTACATTGTGGAACGGATGGT 59.695 45.455 7.20 0.00 42.39 3.55
3508 9016 6.986231 ACATGTCAAAAGATTCCAAGTTTTCC 59.014 34.615 0.00 0.00 0.00 3.13
4100 10142 2.110213 TTCCTGTTGAAGCGCCGT 59.890 55.556 2.29 0.00 0.00 5.68
4394 10745 2.180308 AGTGGTATTAGGAGGAGGAGGG 59.820 54.545 0.00 0.00 0.00 4.30
4401 10752 2.612251 GAGGAGGAGGGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
4493 10859 1.818363 GCTTACCTACCAAGCCGGC 60.818 63.158 21.89 21.89 42.08 6.13
4494 10860 1.905512 CTTACCTACCAAGCCGGCT 59.094 57.895 27.08 27.08 39.03 5.52
4534 10900 1.301479 GGCAAAAGGACGACGAGGT 60.301 57.895 0.00 0.00 0.00 3.85
4535 10901 0.883370 GGCAAAAGGACGACGAGGTT 60.883 55.000 0.00 0.00 0.00 3.50
4715 11081 4.088762 CACGTGTGCATGGCGGTC 62.089 66.667 7.58 0.00 0.00 4.79
4736 11102 1.430632 CATGTTCGCACTCATGGGC 59.569 57.895 0.00 0.00 38.64 5.36
4793 11159 3.068165 CCTCCATCTATGTGTTGACGCTA 59.932 47.826 0.00 0.00 0.00 4.26
4802 11168 0.242555 TGTTGACGCTAGTGATCGCA 59.757 50.000 10.99 4.95 0.00 5.10
5381 11937 7.096023 GCAGCAATAGTGGCGATATACATATAC 60.096 40.741 0.00 0.00 36.08 1.47
5382 11938 7.920682 CAGCAATAGTGGCGATATACATATACA 59.079 37.037 0.00 0.00 36.08 2.29
5383 11939 8.642432 AGCAATAGTGGCGATATACATATACAT 58.358 33.333 0.00 0.00 36.08 2.29
5384 11940 8.916654 GCAATAGTGGCGATATACATATACATC 58.083 37.037 0.00 0.00 0.00 3.06
5387 11943 7.646548 AGTGGCGATATACATATACATCTGT 57.353 36.000 0.00 0.00 0.00 3.41
5388 11944 8.747538 AGTGGCGATATACATATACATCTGTA 57.252 34.615 0.00 0.00 34.67 2.74
5389 11945 9.185680 AGTGGCGATATACATATACATCTGTAA 57.814 33.333 0.00 0.00 33.76 2.41
5444 12016 1.476085 CAGGCAGACCAACAAACAACA 59.524 47.619 0.00 0.00 39.06 3.33
5467 12039 1.825474 CGCTTAGTCTCCCTCTTGGAA 59.175 52.381 0.00 0.00 44.57 3.53
5473 12045 7.310113 CGCTTAGTCTCCCTCTTGGAAATATAT 60.310 40.741 0.00 0.00 44.57 0.86
5475 12047 6.597832 AGTCTCCCTCTTGGAAATATATCG 57.402 41.667 0.00 0.00 44.57 2.92
5500 12072 7.270365 CGTGTGTATTATTCGCATGAAAAACTT 59.730 33.333 0.00 0.00 37.71 2.66
5542 12114 1.092921 TGTGGACCGAGTTGTTGTGC 61.093 55.000 0.00 0.00 0.00 4.57
5589 12165 7.383300 CACTGTCATTTCTTCATTTTCTTTCCC 59.617 37.037 0.00 0.00 0.00 3.97
5592 12168 7.147759 TGTCATTTCTTCATTTTCTTTCCCACA 60.148 33.333 0.00 0.00 0.00 4.17
5593 12169 7.383300 GTCATTTCTTCATTTTCTTTCCCACAG 59.617 37.037 0.00 0.00 0.00 3.66
5620 12196 1.804151 GCTAGGTCAACATTGTTCGCA 59.196 47.619 0.00 0.00 0.00 5.10
5629 12205 1.340889 ACATTGTTCGCACTGGCAAAT 59.659 42.857 0.00 0.00 41.24 2.32
5637 12221 3.616219 TCGCACTGGCAAATTAAGGTAT 58.384 40.909 0.00 0.00 41.24 2.73
5645 12229 8.281893 CACTGGCAAATTAAGGTATTTTTGTTG 58.718 33.333 0.00 0.00 32.88 3.33
5655 12239 1.739338 ATTTTTGTTGTCGCGCCCCA 61.739 50.000 0.00 0.00 0.00 4.96
5661 12245 1.301423 GTTGTCGCGCCCCATTATAA 58.699 50.000 0.00 0.00 0.00 0.98
6270 16004 7.359014 GCATATAAATTTCTTCGTCCTCGGTAC 60.359 40.741 0.00 0.00 37.69 3.34
6402 19709 0.240145 CTTCCGCACGCTATCCGATA 59.760 55.000 0.00 0.00 41.02 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.004215 TGTTGCATTATTGGAGTAGGGATTAAT 58.996 33.333 0.00 0.00 0.00 1.40
1 2 7.350382 TGTTGCATTATTGGAGTAGGGATTAA 58.650 34.615 0.00 0.00 0.00 1.40
3 4 5.765510 TGTTGCATTATTGGAGTAGGGATT 58.234 37.500 0.00 0.00 0.00 3.01
4 5 5.380043 CTGTTGCATTATTGGAGTAGGGAT 58.620 41.667 0.00 0.00 0.00 3.85
5 6 4.385199 CCTGTTGCATTATTGGAGTAGGGA 60.385 45.833 0.00 0.00 29.93 4.20
6 7 3.885297 CCTGTTGCATTATTGGAGTAGGG 59.115 47.826 0.00 0.00 29.93 3.53
36 37 7.384660 GTCCAAATCAGCTCTACTTATGAGATG 59.615 40.741 3.02 3.02 45.86 2.90
38 39 6.381133 TGTCCAAATCAGCTCTACTTATGAGA 59.619 38.462 0.00 0.00 33.68 3.27
40 41 6.544928 TGTCCAAATCAGCTCTACTTATGA 57.455 37.500 0.00 0.00 0.00 2.15
44 45 8.814038 AATTATTGTCCAAATCAGCTCTACTT 57.186 30.769 0.00 0.00 0.00 2.24
47 48 8.677300 GTTGAATTATTGTCCAAATCAGCTCTA 58.323 33.333 0.00 0.00 0.00 2.43
50 51 6.351286 GGGTTGAATTATTGTCCAAATCAGCT 60.351 38.462 0.00 0.00 0.00 4.24
51 52 5.812127 GGGTTGAATTATTGTCCAAATCAGC 59.188 40.000 0.00 0.00 0.00 4.26
53 54 5.105554 CCGGGTTGAATTATTGTCCAAATCA 60.106 40.000 0.00 0.00 0.00 2.57
55 56 5.020132 TCCGGGTTGAATTATTGTCCAAAT 58.980 37.500 0.00 0.00 0.00 2.32
56 57 4.408276 TCCGGGTTGAATTATTGTCCAAA 58.592 39.130 0.00 0.00 0.00 3.28
59 60 3.129813 GGTTCCGGGTTGAATTATTGTCC 59.870 47.826 0.00 0.00 0.00 4.02
62 63 2.098443 CGGGTTCCGGGTTGAATTATTG 59.902 50.000 0.00 0.00 44.15 1.90
66 67 4.408378 CGGGTTCCGGGTTGAATT 57.592 55.556 0.00 0.00 44.15 2.17
76 77 2.109126 GCATGTGAGCTCGGGTTCC 61.109 63.158 9.64 0.00 0.00 3.62
78 79 1.672356 GTGCATGTGAGCTCGGGTT 60.672 57.895 9.64 0.00 34.99 4.11
79 80 2.046892 GTGCATGTGAGCTCGGGT 60.047 61.111 9.64 0.00 34.99 5.28
80 81 2.821366 GGTGCATGTGAGCTCGGG 60.821 66.667 9.64 0.00 34.99 5.14
82 83 2.104859 CCAGGTGCATGTGAGCTCG 61.105 63.158 9.64 0.00 34.99 5.03
83 84 1.002868 ACCAGGTGCATGTGAGCTC 60.003 57.895 6.82 6.82 34.99 4.09
84 85 1.303074 CACCAGGTGCATGTGAGCT 60.303 57.895 6.67 0.00 34.99 4.09
85 86 0.890542 TTCACCAGGTGCATGTGAGC 60.891 55.000 15.64 0.00 39.89 4.26
88 89 2.715046 ACTATTCACCAGGTGCATGTG 58.285 47.619 15.64 9.66 32.98 3.21
91 92 8.766994 ATTATTTTACTATTCACCAGGTGCAT 57.233 30.769 15.64 12.56 32.98 3.96
92 93 9.688091 TTATTATTTTACTATTCACCAGGTGCA 57.312 29.630 15.64 4.10 32.98 4.57
130 131 8.572855 TTCACCACAAAAAGAATTTGGATTTT 57.427 26.923 5.96 0.00 39.02 1.82
131 132 8.572855 TTTCACCACAAAAAGAATTTGGATTT 57.427 26.923 5.96 0.00 39.02 2.17
132 133 8.046107 TCTTTCACCACAAAAAGAATTTGGATT 58.954 29.630 5.96 0.00 39.02 3.01
134 135 6.940739 TCTTTCACCACAAAAAGAATTTGGA 58.059 32.000 5.96 0.00 39.02 3.53
136 137 7.127686 GCATCTTTCACCACAAAAAGAATTTG 58.872 34.615 2.07 0.00 42.86 2.32
137 138 6.822676 TGCATCTTTCACCACAAAAAGAATTT 59.177 30.769 2.07 0.00 42.86 1.82
138 139 6.347696 TGCATCTTTCACCACAAAAAGAATT 58.652 32.000 2.07 0.00 42.86 2.17
139 140 5.916318 TGCATCTTTCACCACAAAAAGAAT 58.084 33.333 2.07 0.00 42.86 2.40
140 141 5.336150 TGCATCTTTCACCACAAAAAGAA 57.664 34.783 2.07 0.00 42.86 2.52
141 142 4.998671 TGCATCTTTCACCACAAAAAGA 57.001 36.364 0.53 0.53 43.52 2.52
143 144 5.163426 ACTCATGCATCTTTCACCACAAAAA 60.163 36.000 0.00 0.00 0.00 1.94
145 146 3.890756 ACTCATGCATCTTTCACCACAAA 59.109 39.130 0.00 0.00 0.00 2.83
147 148 2.815503 CACTCATGCATCTTTCACCACA 59.184 45.455 0.00 0.00 0.00 4.17
149 150 2.439409 CCACTCATGCATCTTTCACCA 58.561 47.619 0.00 0.00 0.00 4.17
150 151 1.747355 CCCACTCATGCATCTTTCACC 59.253 52.381 0.00 0.00 0.00 4.02
151 152 2.163010 CACCCACTCATGCATCTTTCAC 59.837 50.000 0.00 0.00 0.00 3.18
152 153 2.040145 TCACCCACTCATGCATCTTTCA 59.960 45.455 0.00 0.00 0.00 2.69
153 154 2.715046 TCACCCACTCATGCATCTTTC 58.285 47.619 0.00 0.00 0.00 2.62
154 155 2.885135 TCACCCACTCATGCATCTTT 57.115 45.000 0.00 0.00 0.00 2.52
158 159 2.372264 GAACATCACCCACTCATGCAT 58.628 47.619 0.00 0.00 0.00 3.96
161 162 2.274437 CTCGAACATCACCCACTCATG 58.726 52.381 0.00 0.00 0.00 3.07
165 166 1.296715 GGCTCGAACATCACCCACT 59.703 57.895 0.00 0.00 0.00 4.00
166 167 0.605319 TTGGCTCGAACATCACCCAC 60.605 55.000 0.00 0.00 0.00 4.61
167 168 0.109532 TTTGGCTCGAACATCACCCA 59.890 50.000 0.00 0.00 0.00 4.51
168 169 1.463674 ATTTGGCTCGAACATCACCC 58.536 50.000 0.00 0.00 0.00 4.61
169 170 3.057596 TGAAATTTGGCTCGAACATCACC 60.058 43.478 0.00 0.00 0.00 4.02
170 171 4.083324 TCTGAAATTTGGCTCGAACATCAC 60.083 41.667 0.00 0.00 0.00 3.06
171 172 4.071423 TCTGAAATTTGGCTCGAACATCA 58.929 39.130 0.00 0.00 0.00 3.07
175 176 2.226437 TGCTCTGAAATTTGGCTCGAAC 59.774 45.455 0.00 0.00 0.00 3.95
176 177 2.503331 TGCTCTGAAATTTGGCTCGAA 58.497 42.857 0.00 0.00 0.00 3.71
177 178 2.183478 TGCTCTGAAATTTGGCTCGA 57.817 45.000 0.00 0.00 0.00 4.04
179 180 5.346522 CCTAAATGCTCTGAAATTTGGCTC 58.653 41.667 0.00 0.00 0.00 4.70
186 187 6.534475 TCAAATGCCTAAATGCTCTGAAAT 57.466 33.333 0.00 0.00 0.00 2.17
187 188 5.622914 GCTCAAATGCCTAAATGCTCTGAAA 60.623 40.000 0.00 0.00 0.00 2.69
188 189 4.142315 GCTCAAATGCCTAAATGCTCTGAA 60.142 41.667 0.00 0.00 0.00 3.02
190 191 3.129813 TGCTCAAATGCCTAAATGCTCTG 59.870 43.478 0.00 0.00 0.00 3.35
191 192 3.359033 TGCTCAAATGCCTAAATGCTCT 58.641 40.909 0.00 0.00 0.00 4.09
194 195 2.159142 AGCTGCTCAAATGCCTAAATGC 60.159 45.455 0.00 0.00 0.00 3.56
195 196 3.380637 AGAGCTGCTCAAATGCCTAAATG 59.619 43.478 29.49 0.00 32.06 2.32
196 197 3.629087 AGAGCTGCTCAAATGCCTAAAT 58.371 40.909 29.49 3.19 32.06 1.40
197 198 3.077484 AGAGCTGCTCAAATGCCTAAA 57.923 42.857 29.49 0.00 32.06 1.85
198 199 2.795231 AGAGCTGCTCAAATGCCTAA 57.205 45.000 29.49 0.00 32.06 2.69
199 200 2.795231 AAGAGCTGCTCAAATGCCTA 57.205 45.000 29.49 0.00 32.06 3.93
200 201 2.641305 CTAAGAGCTGCTCAAATGCCT 58.359 47.619 29.49 5.97 32.06 4.75
201 202 1.065251 GCTAAGAGCTGCTCAAATGCC 59.935 52.381 29.49 10.20 38.45 4.40
202 203 2.471862 GCTAAGAGCTGCTCAAATGC 57.528 50.000 29.49 22.04 38.45 3.56
213 214 9.943163 CCTGATTTTATCTTTTTAGCTAAGAGC 57.057 33.333 6.24 0.00 42.84 4.09
231 232 8.962679 TGTTTTGTACTGTTTAGACCTGATTTT 58.037 29.630 0.00 0.00 0.00 1.82
232 233 8.514330 TGTTTTGTACTGTTTAGACCTGATTT 57.486 30.769 0.00 0.00 0.00 2.17
235 236 6.646267 ACTGTTTTGTACTGTTTAGACCTGA 58.354 36.000 0.00 0.00 35.64 3.86
236 237 6.920569 ACTGTTTTGTACTGTTTAGACCTG 57.079 37.500 0.00 0.00 35.64 4.00
237 238 8.886719 GTTTACTGTTTTGTACTGTTTAGACCT 58.113 33.333 0.00 0.00 39.36 3.85
238 239 8.886719 AGTTTACTGTTTTGTACTGTTTAGACC 58.113 33.333 0.00 0.00 39.36 3.85
244 245 9.968870 TGAAAAAGTTTACTGTTTTGTACTGTT 57.031 25.926 0.00 0.00 39.36 3.16
245 246 9.401873 GTGAAAAAGTTTACTGTTTTGTACTGT 57.598 29.630 0.00 0.00 41.24 3.55
246 247 9.400638 TGTGAAAAAGTTTACTGTTTTGTACTG 57.599 29.630 0.00 0.00 33.75 2.74
250 251 9.361315 GGTATGTGAAAAAGTTTACTGTTTTGT 57.639 29.630 0.00 0.00 33.75 2.83
251 252 8.813282 GGGTATGTGAAAAAGTTTACTGTTTTG 58.187 33.333 0.00 0.00 33.75 2.44
252 253 8.755028 AGGGTATGTGAAAAAGTTTACTGTTTT 58.245 29.630 0.00 2.26 33.75 2.43
254 255 7.891498 AGGGTATGTGAAAAAGTTTACTGTT 57.109 32.000 0.00 0.00 0.00 3.16
255 256 8.983702 TTAGGGTATGTGAAAAAGTTTACTGT 57.016 30.769 0.00 0.00 0.00 3.55
261 262 9.758651 GACAAAATTAGGGTATGTGAAAAAGTT 57.241 29.630 0.00 0.00 0.00 2.66
262 263 9.143155 AGACAAAATTAGGGTATGTGAAAAAGT 57.857 29.630 0.00 0.00 0.00 2.66
263 264 9.981114 AAGACAAAATTAGGGTATGTGAAAAAG 57.019 29.630 0.00 0.00 0.00 2.27
290 291 4.202398 ACATCTGAGGAGACTTCAGCAAAA 60.202 41.667 0.00 0.00 44.43 2.44
292 293 2.902486 ACATCTGAGGAGACTTCAGCAA 59.098 45.455 0.00 0.00 44.43 3.91
293 294 2.495270 GACATCTGAGGAGACTTCAGCA 59.505 50.000 0.00 0.00 44.43 4.41
294 295 2.159114 GGACATCTGAGGAGACTTCAGC 60.159 54.545 0.00 0.00 44.43 4.26
296 297 3.175438 TGGACATCTGAGGAGACTTCA 57.825 47.619 0.00 0.00 44.43 3.02
297 298 4.543590 TTTGGACATCTGAGGAGACTTC 57.456 45.455 0.00 0.00 44.43 3.01
298 299 4.288105 ACATTTGGACATCTGAGGAGACTT 59.712 41.667 0.00 0.00 44.43 3.01
301 302 4.533707 AGAACATTTGGACATCTGAGGAGA 59.466 41.667 0.00 0.00 0.00 3.71
303 304 4.286808 TGAGAACATTTGGACATCTGAGGA 59.713 41.667 0.00 0.00 0.00 3.71
305 306 6.564709 TTTGAGAACATTTGGACATCTGAG 57.435 37.500 0.00 0.00 0.00 3.35
306 307 7.528996 AATTTGAGAACATTTGGACATCTGA 57.471 32.000 0.00 0.00 0.00 3.27
307 308 8.014322 CAAATTTGAGAACATTTGGACATCTG 57.986 34.615 13.08 0.00 32.20 2.90
317 318 4.582701 TCGTGCCAAATTTGAGAACATT 57.417 36.364 19.86 0.00 0.00 2.71
318 319 4.202101 TGTTCGTGCCAAATTTGAGAACAT 60.202 37.500 27.39 0.00 40.68 2.71
319 320 3.129462 TGTTCGTGCCAAATTTGAGAACA 59.871 39.130 27.39 27.39 42.47 3.18
320 321 3.701241 TGTTCGTGCCAAATTTGAGAAC 58.299 40.909 24.78 24.78 37.56 3.01
322 323 3.567585 TGATGTTCGTGCCAAATTTGAGA 59.432 39.130 19.86 10.01 0.00 3.27
323 324 3.670055 GTGATGTTCGTGCCAAATTTGAG 59.330 43.478 19.86 10.54 0.00 3.02
325 326 2.404693 CGTGATGTTCGTGCCAAATTTG 59.595 45.455 11.40 11.40 0.00 2.32
326 327 2.660490 CGTGATGTTCGTGCCAAATTT 58.340 42.857 0.00 0.00 0.00 1.82
327 328 1.665735 GCGTGATGTTCGTGCCAAATT 60.666 47.619 0.00 0.00 0.00 1.82
328 329 0.109781 GCGTGATGTTCGTGCCAAAT 60.110 50.000 0.00 0.00 0.00 2.32
329 330 1.281353 GCGTGATGTTCGTGCCAAA 59.719 52.632 0.00 0.00 0.00 3.28
330 331 1.233950 ATGCGTGATGTTCGTGCCAA 61.234 50.000 0.00 0.00 0.00 4.52
331 332 1.233950 AATGCGTGATGTTCGTGCCA 61.234 50.000 0.00 0.00 0.00 4.92
332 333 0.521242 GAATGCGTGATGTTCGTGCC 60.521 55.000 0.00 0.00 0.00 5.01
333 334 0.165727 TGAATGCGTGATGTTCGTGC 59.834 50.000 0.00 0.00 0.00 5.34
334 335 2.592796 TTGAATGCGTGATGTTCGTG 57.407 45.000 0.00 0.00 0.00 4.35
335 336 2.741517 TGATTGAATGCGTGATGTTCGT 59.258 40.909 0.00 0.00 0.00 3.85
336 337 3.388149 TGATTGAATGCGTGATGTTCG 57.612 42.857 0.00 0.00 0.00 3.95
337 338 5.165911 AGATGATTGAATGCGTGATGTTC 57.834 39.130 0.00 0.00 0.00 3.18
338 339 5.571784 AAGATGATTGAATGCGTGATGTT 57.428 34.783 0.00 0.00 0.00 2.71
339 340 5.124297 TGAAAGATGATTGAATGCGTGATGT 59.876 36.000 0.00 0.00 0.00 3.06
341 342 5.449588 GGTGAAAGATGATTGAATGCGTGAT 60.450 40.000 0.00 0.00 0.00 3.06
344 345 3.758023 TGGTGAAAGATGATTGAATGCGT 59.242 39.130 0.00 0.00 0.00 5.24
345 346 4.100529 GTGGTGAAAGATGATTGAATGCG 58.899 43.478 0.00 0.00 0.00 4.73
346 347 5.063180 TGTGGTGAAAGATGATTGAATGC 57.937 39.130 0.00 0.00 0.00 3.56
347 348 7.949903 TTTTGTGGTGAAAGATGATTGAATG 57.050 32.000 0.00 0.00 0.00 2.67
405 406 5.410067 CGGGCATGAACAGTAAAATCATTT 58.590 37.500 0.00 0.00 31.65 2.32
406 407 4.142182 CCGGGCATGAACAGTAAAATCATT 60.142 41.667 0.00 0.00 31.65 2.57
407 408 3.381272 CCGGGCATGAACAGTAAAATCAT 59.619 43.478 0.00 0.00 34.22 2.45
409 410 2.752903 ACCGGGCATGAACAGTAAAATC 59.247 45.455 6.32 0.00 0.00 2.17
410 411 2.752903 GACCGGGCATGAACAGTAAAAT 59.247 45.455 0.00 0.00 0.00 1.82
411 412 2.156098 GACCGGGCATGAACAGTAAAA 58.844 47.619 0.00 0.00 0.00 1.52
415 416 0.981183 TTAGACCGGGCATGAACAGT 59.019 50.000 11.69 0.00 0.00 3.55
416 417 2.158900 AGATTAGACCGGGCATGAACAG 60.159 50.000 11.69 0.00 0.00 3.16
418 419 2.158957 TCAGATTAGACCGGGCATGAAC 60.159 50.000 11.69 0.00 0.00 3.18
419 420 2.103094 CTCAGATTAGACCGGGCATGAA 59.897 50.000 11.69 0.00 0.00 2.57
423 424 1.686325 GGCTCAGATTAGACCGGGCA 61.686 60.000 11.69 0.00 0.00 5.36
424 425 1.069935 GGCTCAGATTAGACCGGGC 59.930 63.158 6.32 0.52 0.00 6.13
425 426 1.749033 GGGCTCAGATTAGACCGGG 59.251 63.158 6.32 0.00 34.10 5.73
429 430 0.676736 CTCCCGGGCTCAGATTAGAC 59.323 60.000 18.49 0.00 0.00 2.59
430 431 1.115930 GCTCCCGGGCTCAGATTAGA 61.116 60.000 18.49 0.00 0.00 2.10
431 432 1.369321 GCTCCCGGGCTCAGATTAG 59.631 63.158 18.49 6.38 0.00 1.73
433 434 3.483869 GGCTCCCGGGCTCAGATT 61.484 66.667 18.49 0.00 37.53 2.40
434 435 4.804420 TGGCTCCCGGGCTCAGAT 62.804 66.667 18.49 0.00 41.48 2.90
438 439 2.517166 GATTTGGCTCCCGGGCTC 60.517 66.667 18.49 9.71 41.48 4.70
439 440 4.489771 CGATTTGGCTCCCGGGCT 62.490 66.667 18.49 0.00 41.48 5.19
441 442 3.995506 AAGCGATTTGGCTCCCGGG 62.996 63.158 16.85 16.85 43.93 5.73
443 444 0.243636 AAAAAGCGATTTGGCTCCCG 59.756 50.000 0.00 0.00 43.93 5.14
459 460 6.320672 TCCGGTTGTAGTCCAAAACATAAAAA 59.679 34.615 0.00 0.00 34.07 1.94
460 461 5.826737 TCCGGTTGTAGTCCAAAACATAAAA 59.173 36.000 0.00 0.00 34.07 1.52
461 462 5.374921 TCCGGTTGTAGTCCAAAACATAAA 58.625 37.500 0.00 0.00 34.07 1.40
462 463 4.970711 TCCGGTTGTAGTCCAAAACATAA 58.029 39.130 0.00 0.00 34.07 1.90
463 464 4.283978 TCTCCGGTTGTAGTCCAAAACATA 59.716 41.667 0.00 0.00 34.07 2.29
465 466 2.435069 TCTCCGGTTGTAGTCCAAAACA 59.565 45.455 0.00 0.00 34.07 2.83
466 467 2.804527 GTCTCCGGTTGTAGTCCAAAAC 59.195 50.000 0.00 0.00 34.07 2.43
469 470 1.616865 CTGTCTCCGGTTGTAGTCCAA 59.383 52.381 0.00 0.00 0.00 3.53
470 471 1.254026 CTGTCTCCGGTTGTAGTCCA 58.746 55.000 0.00 0.00 0.00 4.02
471 472 0.108756 GCTGTCTCCGGTTGTAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
472 473 0.601558 TGCTGTCTCCGGTTGTAGTC 59.398 55.000 0.00 0.00 0.00 2.59
475 476 0.391130 GCATGCTGTCTCCGGTTGTA 60.391 55.000 11.37 0.00 0.00 2.41
477 478 0.957395 AAGCATGCTGTCTCCGGTTG 60.957 55.000 23.48 0.00 0.00 3.77
479 480 1.078848 GAAGCATGCTGTCTCCGGT 60.079 57.895 23.48 1.63 0.00 5.28
487 488 0.318022 TTTGCACACGAAGCATGCTG 60.318 50.000 23.48 12.58 42.33 4.41
488 489 0.385029 TTTTGCACACGAAGCATGCT 59.615 45.000 16.30 16.30 42.33 3.79
519 520 0.322975 TCTCCAACAAGAGCAGGAGC 59.677 55.000 0.00 0.00 45.69 4.70
525 526 2.777832 ATGACCTCTCCAACAAGAGC 57.222 50.000 0.00 0.00 41.27 4.09
550 551 3.604772 CGTTCAAGAGGAGAAAAAGTGCG 60.605 47.826 0.00 0.00 0.00 5.34
553 554 5.429130 AGTTCGTTCAAGAGGAGAAAAAGT 58.571 37.500 0.00 0.00 0.00 2.66
564 573 3.125316 CCGTTACCAAGTTCGTTCAAGA 58.875 45.455 0.00 0.00 0.00 3.02
572 581 3.697982 CCAACAAACCGTTACCAAGTTC 58.302 45.455 0.00 0.00 35.52 3.01
578 587 0.876399 ATCGCCAACAAACCGTTACC 59.124 50.000 0.00 0.00 35.52 2.85
590 599 1.338960 TGATGACAAGAGCATCGCCAA 60.339 47.619 0.00 0.00 43.88 4.52
602 611 9.959749 GGTAGTCTTTTAAATTTGTGATGACAA 57.040 29.630 0.00 0.00 40.45 3.18
611 620 5.624292 CCGGACGGTAGTCTTTTAAATTTG 58.376 41.667 0.00 0.00 46.29 2.32
630 639 2.488204 TGACAAATCAATGAGCCGGA 57.512 45.000 5.05 0.00 0.00 5.14
634 643 4.679662 CTGGGAATGACAAATCAATGAGC 58.320 43.478 0.00 0.00 38.69 4.26
638 647 5.486735 TTTGCTGGGAATGACAAATCAAT 57.513 34.783 0.00 0.00 38.69 2.57
646 655 2.424956 GGTCTCATTTGCTGGGAATGAC 59.575 50.000 0.00 0.00 35.65 3.06
663 672 1.073897 GAGGCAAGTTGGCAGGTCT 59.926 57.895 28.85 9.90 46.46 3.85
673 685 1.002544 GGCAACTGACTAGAGGCAAGT 59.997 52.381 0.00 0.00 0.00 3.16
692 704 1.073923 AGGTTGGCTTGTTGGAGTAGG 59.926 52.381 0.00 0.00 0.00 3.18
795 807 1.067846 TGTCTCGCACGCTTCACTATT 60.068 47.619 0.00 0.00 0.00 1.73
797 809 0.109735 CTGTCTCGCACGCTTCACTA 60.110 55.000 0.00 0.00 0.00 2.74
807 819 2.230508 ACGTTTATCTTCCTGTCTCGCA 59.769 45.455 0.00 0.00 0.00 5.10
823 835 3.553511 TGCATTTTTCGCAAATCACGTTT 59.446 34.783 0.00 0.00 36.17 3.60
835 847 4.035017 ACGACTTCACTTTGCATTTTTCG 58.965 39.130 0.00 0.00 0.00 3.46
842 854 1.205657 GACGACGACTTCACTTTGCA 58.794 50.000 0.00 0.00 0.00 4.08
843 855 0.158928 CGACGACGACTTCACTTTGC 59.841 55.000 0.00 0.00 42.66 3.68
844 856 0.776451 CCGACGACGACTTCACTTTG 59.224 55.000 9.28 0.00 42.66 2.77
845 857 0.318445 CCCGACGACGACTTCACTTT 60.318 55.000 9.28 0.00 42.66 2.66
852 869 0.674581 TACATGACCCGACGACGACT 60.675 55.000 9.28 0.00 42.66 4.18
932 3540 5.238650 TGGTTGCTTCTAGCTAGTTTGTTTC 59.761 40.000 20.10 7.75 42.97 2.78
993 3601 4.344102 AGATCCTTGCATTGCATAGCATTT 59.656 37.500 12.95 0.00 40.94 2.32
1032 3648 1.471119 GGGATGGGATATGCTGCATG 58.529 55.000 24.59 0.00 0.00 4.06
1200 3823 3.013327 TGCATCTGCCAGGCTCCT 61.013 61.111 14.15 0.00 41.18 3.69
1290 3913 2.823924 TGCCGTTGCAGTAGTAGAAA 57.176 45.000 0.00 0.00 44.23 2.52
1419 4042 0.811616 CTGCGTAGGAACCCATGAGC 60.812 60.000 0.00 0.00 0.00 4.26
1614 4249 1.526575 CGAAGGTGGCCAGCAACATT 61.527 55.000 34.87 21.13 0.00 2.71
1618 4253 4.577677 TGCGAAGGTGGCCAGCAA 62.578 61.111 34.87 13.23 34.66 3.91
1641 4276 2.981909 CCGGCGGCGTAGGAGATA 60.982 66.667 30.09 0.00 0.00 1.98
1698 4339 1.379044 AAGAAGGCGGCCATCCTTG 60.379 57.895 25.97 0.00 43.54 3.61
2059 4712 2.146342 CAAGTTCTGCAACCATCTCGT 58.854 47.619 0.00 0.00 32.22 4.18
2145 4816 3.766691 GGCACGAGGGTTAGCCGA 61.767 66.667 0.00 0.00 37.41 5.54
2153 4824 2.403252 ATTCTAGTTTGGCACGAGGG 57.597 50.000 0.00 0.00 0.00 4.30
2255 6069 3.761218 TGAGGCTTTCAGACAGAGACTAG 59.239 47.826 0.00 0.00 0.00 2.57
2321 6614 9.590451 AGTGTAAAATATTTTTCATGCAGGATG 57.410 29.630 18.14 0.00 32.86 3.51
2554 7517 6.854381 GGTTTGTTATTTCTCACTAAACCGTG 59.146 38.462 0.00 0.00 37.09 4.94
2806 7806 4.750098 TCAACGCTCTCTTTCCTTGTTTAG 59.250 41.667 0.00 0.00 0.00 1.85
2854 7854 8.907222 TTGTCATGCATGTCACATACTAATAT 57.093 30.769 23.43 0.00 0.00 1.28
2857 7857 8.729805 TTATTGTCATGCATGTCACATACTAA 57.270 30.769 23.43 15.82 0.00 2.24
2867 7867 4.032310 ACCCCATTTATTGTCATGCATGT 58.968 39.130 25.43 9.58 0.00 3.21
2909 7909 9.363401 ACCATACTATCTTTACAGTGCATAGTA 57.637 33.333 0.00 0.00 37.09 1.82
2919 7919 9.670442 AGATTCCCTTACCATACTATCTTTACA 57.330 33.333 0.00 0.00 0.00 2.41
2922 7922 8.652290 GTGAGATTCCCTTACCATACTATCTTT 58.348 37.037 0.00 0.00 0.00 2.52
3021 8021 4.335594 GGAATGGAGTATATAAATGCCCGC 59.664 45.833 0.00 0.00 0.00 6.13
3038 8038 9.842775 ATCTATATGCACTACATTATGGAATGG 57.157 33.333 0.00 0.00 45.83 3.16
3043 8043 9.440773 ACACAATCTATATGCACTACATTATGG 57.559 33.333 0.00 0.00 40.38 2.74
3209 8211 6.926313 AGACCAAGTTTGTAGAGACAGATAC 58.074 40.000 0.00 0.00 36.76 2.24
3213 8215 6.750148 ACTTAGACCAAGTTTGTAGAGACAG 58.250 40.000 0.00 0.00 45.54 3.51
3214 8216 6.726490 ACTTAGACCAAGTTTGTAGAGACA 57.274 37.500 0.00 0.00 45.54 3.41
3262 8264 6.646653 CGTTCCACAATGTAGTGCATATAGAT 59.353 38.462 0.00 0.00 36.67 1.98
3276 8278 1.533625 ACACCATCCGTTCCACAATG 58.466 50.000 0.00 0.00 0.00 2.82
3293 8295 4.929819 TTTCTCGGCAGTAGCATATACA 57.070 40.909 0.00 0.00 44.61 2.29
3328 8330 7.033185 ACACACAAGTTTGGAAAATACACTTC 58.967 34.615 0.00 0.00 0.00 3.01
3368 8370 4.408921 TCTTGGATGGTCCGAATAACTCAT 59.591 41.667 0.00 0.00 40.17 2.90
3484 8987 6.144402 CGGAAAACTTGGAATCTTTTGACATG 59.856 38.462 0.00 0.00 0.00 3.21
3637 9655 5.221126 GCAAACATGGACTTCAAACTTCTCT 60.221 40.000 0.00 0.00 0.00 3.10
3677 9697 9.586732 CCCCCATATCTATGATGTTTTCTAAAA 57.413 33.333 0.00 0.00 35.75 1.52
4100 10142 1.673993 CATGGCTGCCACCAACGTA 60.674 57.895 25.99 0.00 44.65 3.57
4401 10752 2.815647 CTTGCTTCGTCGCCCTCC 60.816 66.667 0.00 0.00 0.00 4.30
4521 10887 0.246635 CCATGAACCTCGTCGTCCTT 59.753 55.000 0.00 0.00 0.00 3.36
4715 11081 1.061411 CATGAGTGCGAACATGCCG 59.939 57.895 0.00 0.00 37.62 5.69
4766 11132 5.163550 CGTCAACACATAGATGGAGGTCTTA 60.164 44.000 0.00 0.00 0.00 2.10
4793 11159 2.125912 GCCGACACTGCGATCACT 60.126 61.111 0.00 0.00 0.00 3.41
4802 11168 2.064581 GGGTATGGAGGCCGACACT 61.065 63.158 4.48 0.00 0.00 3.55
5381 11937 5.512788 GGATGTGCGATTTTTGTTACAGATG 59.487 40.000 0.00 0.00 0.00 2.90
5382 11938 5.415701 AGGATGTGCGATTTTTGTTACAGAT 59.584 36.000 0.00 0.00 0.00 2.90
5383 11939 4.759693 AGGATGTGCGATTTTTGTTACAGA 59.240 37.500 0.00 0.00 0.00 3.41
5384 11940 5.046910 AGGATGTGCGATTTTTGTTACAG 57.953 39.130 0.00 0.00 0.00 2.74
5385 11941 4.083003 GGAGGATGTGCGATTTTTGTTACA 60.083 41.667 0.00 0.00 0.00 2.41
5386 11942 4.412207 GGAGGATGTGCGATTTTTGTTAC 58.588 43.478 0.00 0.00 0.00 2.50
5387 11943 3.442273 GGGAGGATGTGCGATTTTTGTTA 59.558 43.478 0.00 0.00 0.00 2.41
5388 11944 2.231235 GGGAGGATGTGCGATTTTTGTT 59.769 45.455 0.00 0.00 0.00 2.83
5389 11945 1.818674 GGGAGGATGTGCGATTTTTGT 59.181 47.619 0.00 0.00 0.00 2.83
5430 12001 2.601804 AGCGTTTGTTGTTTGTTGGTC 58.398 42.857 0.00 0.00 0.00 4.02
5431 12002 2.734276 AGCGTTTGTTGTTTGTTGGT 57.266 40.000 0.00 0.00 0.00 3.67
5444 12016 2.028020 CCAAGAGGGAGACTAAGCGTTT 60.028 50.000 0.00 0.00 40.01 3.60
5467 12039 9.581099 TCATGCGAATAATACACACGATATATT 57.419 29.630 0.00 0.00 0.00 1.28
5473 12045 6.410243 TTTTCATGCGAATAATACACACGA 57.590 33.333 0.00 0.00 0.00 4.35
5475 12047 8.365210 CAAGTTTTTCATGCGAATAATACACAC 58.635 33.333 0.00 0.00 0.00 3.82
5500 12072 7.661027 CACATGGTGTGGTGATAATGATATACA 59.339 37.037 0.00 0.00 44.27 2.29
5589 12165 4.314961 TGTTGACCTAGCAATGTACTGTG 58.685 43.478 0.00 0.00 0.00 3.66
5592 12168 5.560724 ACAATGTTGACCTAGCAATGTACT 58.439 37.500 0.00 0.00 32.69 2.73
5593 12169 5.880054 ACAATGTTGACCTAGCAATGTAC 57.120 39.130 0.00 0.00 32.69 2.90
5620 12196 7.990314 ACAACAAAAATACCTTAATTTGCCAGT 59.010 29.630 0.00 0.00 36.48 4.00
5629 12205 4.220572 GCGCGACAACAAAAATACCTTAA 58.779 39.130 12.10 0.00 0.00 1.85
5637 12221 1.739338 ATGGGGCGCGACAACAAAAA 61.739 50.000 17.00 0.00 0.00 1.94
5645 12229 1.003223 GTGTTTATAATGGGGCGCGAC 60.003 52.381 12.10 6.99 0.00 5.19
5655 12239 8.860088 GGCCCATTTTCTATCAGTGTTTATAAT 58.140 33.333 0.00 0.00 0.00 1.28
5661 12245 4.322057 AGGCCCATTTTCTATCAGTGTT 57.678 40.909 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.