Multiple sequence alignment - TraesCS2D01G040400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G040400 | chr2D | 100.000 | 6454 | 0 | 0 | 1 | 6454 | 14725424 | 14731877 | 0.000000e+00 | 11919.0 |
1 | TraesCS2D01G040400 | chr2D | 83.990 | 1624 | 217 | 27 | 3796 | 5385 | 14746071 | 14747685 | 0.000000e+00 | 1519.0 |
2 | TraesCS2D01G040400 | chr2D | 98.741 | 794 | 7 | 1 | 5664 | 6454 | 49240267 | 49241060 | 0.000000e+00 | 1408.0 |
3 | TraesCS2D01G040400 | chr2D | 87.217 | 1103 | 108 | 26 | 899 | 1986 | 14743928 | 14745012 | 0.000000e+00 | 1225.0 |
4 | TraesCS2D01G040400 | chr2D | 84.086 | 465 | 63 | 7 | 1117 | 1581 | 14758219 | 14757766 | 7.680000e-119 | 438.0 |
5 | TraesCS2D01G040400 | chr2D | 82.301 | 339 | 49 | 8 | 123 | 459 | 77633642 | 77633313 | 3.810000e-72 | 283.0 |
6 | TraesCS2D01G040400 | chr2D | 77.778 | 261 | 49 | 9 | 167 | 424 | 37248546 | 37248292 | 1.120000e-32 | 152.0 |
7 | TraesCS2D01G040400 | chr2A | 94.108 | 5227 | 188 | 38 | 481 | 5636 | 16817551 | 16822728 | 0.000000e+00 | 7836.0 |
8 | TraesCS2D01G040400 | chr2A | 84.214 | 1628 | 208 | 30 | 3796 | 5385 | 16831476 | 16833092 | 0.000000e+00 | 1537.0 |
9 | TraesCS2D01G040400 | chr2A | 84.634 | 1217 | 142 | 30 | 885 | 2073 | 16829280 | 16830479 | 0.000000e+00 | 1170.0 |
10 | TraesCS2D01G040400 | chr2A | 81.149 | 1236 | 173 | 36 | 854 | 2071 | 16840419 | 16839226 | 0.000000e+00 | 937.0 |
11 | TraesCS2D01G040400 | chr2A | 82.075 | 954 | 148 | 15 | 3796 | 4746 | 16826021 | 16826954 | 0.000000e+00 | 793.0 |
12 | TraesCS2D01G040400 | chr2A | 84.967 | 459 | 57 | 9 | 3870 | 4328 | 16838315 | 16837869 | 7.630000e-124 | 455.0 |
13 | TraesCS2D01G040400 | chr2A | 84.136 | 353 | 49 | 5 | 1683 | 2030 | 16824676 | 16825026 | 1.040000e-87 | 335.0 |
14 | TraesCS2D01G040400 | chr2A | 77.925 | 453 | 41 | 22 | 899 | 1306 | 16823673 | 16824111 | 1.810000e-55 | 228.0 |
15 | TraesCS2D01G040400 | chr2A | 85.246 | 122 | 18 | 0 | 5257 | 5378 | 16836597 | 16836476 | 6.790000e-25 | 126.0 |
16 | TraesCS2D01G040400 | chr2B | 86.861 | 2131 | 169 | 51 | 640 | 2721 | 26490932 | 26493000 | 0.000000e+00 | 2281.0 |
17 | TraesCS2D01G040400 | chr2B | 84.595 | 2272 | 250 | 48 | 3436 | 5665 | 26493463 | 26495676 | 0.000000e+00 | 2165.0 |
18 | TraesCS2D01G040400 | chr2B | 83.837 | 1621 | 218 | 22 | 3796 | 5385 | 26508905 | 26510512 | 0.000000e+00 | 1502.0 |
19 | TraesCS2D01G040400 | chr2B | 84.500 | 1200 | 138 | 28 | 886 | 2073 | 26506749 | 26507912 | 0.000000e+00 | 1142.0 |
20 | TraesCS2D01G040400 | chr2B | 84.046 | 959 | 136 | 7 | 1117 | 2071 | 26530375 | 26529430 | 0.000000e+00 | 907.0 |
21 | TraesCS2D01G040400 | chr2B | 82.513 | 955 | 143 | 17 | 3797 | 4743 | 26503257 | 26504195 | 0.000000e+00 | 817.0 |
22 | TraesCS2D01G040400 | chr2B | 79.778 | 1083 | 193 | 16 | 989 | 2059 | 13783415 | 13784483 | 0.000000e+00 | 763.0 |
23 | TraesCS2D01G040400 | chr2B | 81.062 | 998 | 154 | 21 | 4400 | 5378 | 26526900 | 26525919 | 0.000000e+00 | 763.0 |
24 | TraesCS2D01G040400 | chr2B | 82.236 | 653 | 87 | 22 | 4755 | 5385 | 26521445 | 26522090 | 2.650000e-148 | 536.0 |
25 | TraesCS2D01G040400 | chr2B | 88.193 | 415 | 47 | 2 | 3849 | 4262 | 26527535 | 26527122 | 1.620000e-135 | 494.0 |
26 | TraesCS2D01G040400 | chr2B | 78.720 | 672 | 115 | 16 | 4709 | 5357 | 13797653 | 13798319 | 2.150000e-114 | 424.0 |
27 | TraesCS2D01G040400 | chr2B | 80.370 | 433 | 46 | 15 | 899 | 1306 | 26496609 | 26497027 | 6.330000e-75 | 292.0 |
28 | TraesCS2D01G040400 | chr2B | 83.444 | 302 | 45 | 3 | 4412 | 4713 | 13787354 | 13787650 | 6.370000e-70 | 276.0 |
29 | TraesCS2D01G040400 | chr2B | 85.496 | 262 | 26 | 9 | 3042 | 3300 | 444489425 | 444489677 | 4.960000e-66 | 263.0 |
30 | TraesCS2D01G040400 | chr2B | 100.000 | 29 | 0 | 0 | 8 | 36 | 26490735 | 26490763 | 3.000000e-03 | 54.7 |
31 | TraesCS2D01G040400 | chr5D | 99.117 | 793 | 6 | 1 | 5663 | 6454 | 557423329 | 557422537 | 0.000000e+00 | 1424.0 |
32 | TraesCS2D01G040400 | chr5D | 98.254 | 802 | 12 | 2 | 5655 | 6454 | 554307192 | 554307993 | 0.000000e+00 | 1402.0 |
33 | TraesCS2D01G040400 | chr3D | 98.866 | 794 | 7 | 1 | 5663 | 6454 | 573097096 | 573097889 | 0.000000e+00 | 1415.0 |
34 | TraesCS2D01G040400 | chr3D | 98.483 | 791 | 12 | 0 | 5664 | 6454 | 580313080 | 580312290 | 0.000000e+00 | 1395.0 |
35 | TraesCS2D01G040400 | chr7D | 98.613 | 793 | 10 | 1 | 5663 | 6454 | 55144141 | 55144933 | 0.000000e+00 | 1402.0 |
36 | TraesCS2D01G040400 | chr7D | 98.489 | 794 | 9 | 1 | 5664 | 6454 | 624412727 | 624411934 | 0.000000e+00 | 1397.0 |
37 | TraesCS2D01G040400 | chr7D | 84.127 | 63 | 7 | 2 | 2847 | 2906 | 208212069 | 208212131 | 2.510000e-04 | 58.4 |
38 | TraesCS2D01G040400 | chr1D | 98.485 | 792 | 11 | 1 | 5664 | 6454 | 361876491 | 361875700 | 0.000000e+00 | 1395.0 |
39 | TraesCS2D01G040400 | chr6D | 98.363 | 794 | 11 | 2 | 5663 | 6454 | 12278824 | 12279617 | 0.000000e+00 | 1393.0 |
40 | TraesCS2D01G040400 | chr6D | 85.286 | 367 | 39 | 12 | 65 | 427 | 33335342 | 33334987 | 1.320000e-96 | 364.0 |
41 | TraesCS2D01G040400 | chr4B | 85.410 | 329 | 34 | 11 | 129 | 455 | 180760248 | 180759932 | 4.820000e-86 | 329.0 |
42 | TraesCS2D01G040400 | chrUn | 85.821 | 268 | 21 | 14 | 3035 | 3297 | 285474066 | 285473811 | 1.070000e-67 | 268.0 |
43 | TraesCS2D01G040400 | chrUn | 85.821 | 268 | 21 | 14 | 3035 | 3297 | 347527406 | 347527661 | 1.070000e-67 | 268.0 |
44 | TraesCS2D01G040400 | chrUn | 82.692 | 208 | 30 | 3 | 5205 | 5412 | 359746957 | 359747158 | 5.140000e-41 | 180.0 |
45 | TraesCS2D01G040400 | chr6A | 85.227 | 264 | 27 | 9 | 3037 | 3297 | 596891824 | 596891570 | 1.780000e-65 | 261.0 |
46 | TraesCS2D01G040400 | chr6B | 84.906 | 265 | 30 | 7 | 3037 | 3299 | 2044114 | 2044370 | 6.420000e-65 | 259.0 |
47 | TraesCS2D01G040400 | chr6B | 88.827 | 179 | 14 | 6 | 281 | 455 | 645475080 | 645475256 | 1.410000e-51 | 215.0 |
48 | TraesCS2D01G040400 | chr6B | 79.545 | 132 | 20 | 7 | 195 | 321 | 534091596 | 534091467 | 3.210000e-13 | 87.9 |
49 | TraesCS2D01G040400 | chr7B | 84.906 | 265 | 28 | 9 | 3037 | 3298 | 158072628 | 158072883 | 2.310000e-64 | 257.0 |
50 | TraesCS2D01G040400 | chr7B | 83.516 | 182 | 16 | 7 | 276 | 454 | 649865638 | 649865808 | 2.410000e-34 | 158.0 |
51 | TraesCS2D01G040400 | chr7B | 78.182 | 110 | 12 | 10 | 2796 | 2894 | 193330921 | 193330813 | 6.990000e-05 | 60.2 |
52 | TraesCS2D01G040400 | chr5A | 84.758 | 269 | 28 | 10 | 3037 | 3302 | 487842701 | 487842959 | 2.310000e-64 | 257.0 |
53 | TraesCS2D01G040400 | chr1B | 84.211 | 266 | 28 | 11 | 3037 | 3298 | 377191298 | 377191043 | 5.000000e-61 | 246.0 |
54 | TraesCS2D01G040400 | chr5B | 78.788 | 231 | 36 | 10 | 232 | 458 | 676620419 | 676620198 | 6.750000e-30 | 143.0 |
55 | TraesCS2D01G040400 | chr7A | 76.374 | 182 | 43 | 0 | 1761 | 1942 | 17328476 | 17328657 | 1.480000e-16 | 99.0 |
56 | TraesCS2D01G040400 | chr4A | 74.146 | 205 | 53 | 0 | 1761 | 1965 | 715816982 | 715817186 | 1.150000e-12 | 86.1 |
57 | TraesCS2D01G040400 | chr4A | 82.558 | 86 | 15 | 0 | 1880 | 1965 | 715809006 | 715809091 | 6.940000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G040400 | chr2D | 14725424 | 14731877 | 6453 | False | 11919.000000 | 11919 | 100.000000 | 1 | 6454 | 1 | chr2D.!!$F1 | 6453 |
1 | TraesCS2D01G040400 | chr2D | 49240267 | 49241060 | 793 | False | 1408.000000 | 1408 | 98.741000 | 5664 | 6454 | 1 | chr2D.!!$F2 | 790 |
2 | TraesCS2D01G040400 | chr2D | 14743928 | 14747685 | 3757 | False | 1372.000000 | 1519 | 85.603500 | 899 | 5385 | 2 | chr2D.!!$F3 | 4486 |
3 | TraesCS2D01G040400 | chr2A | 16817551 | 16833092 | 15541 | False | 1983.166667 | 7836 | 84.515333 | 481 | 5636 | 6 | chr2A.!!$F1 | 5155 |
4 | TraesCS2D01G040400 | chr2A | 16836476 | 16840419 | 3943 | True | 506.000000 | 937 | 83.787333 | 854 | 5378 | 3 | chr2A.!!$R1 | 4524 |
5 | TraesCS2D01G040400 | chr2B | 26490735 | 26497027 | 6292 | False | 1198.175000 | 2281 | 87.956500 | 8 | 5665 | 4 | chr2B.!!$F5 | 5657 |
6 | TraesCS2D01G040400 | chr2B | 26503257 | 26510512 | 7255 | False | 1153.666667 | 1502 | 83.616667 | 886 | 5385 | 3 | chr2B.!!$F6 | 4499 |
7 | TraesCS2D01G040400 | chr2B | 26525919 | 26530375 | 4456 | True | 721.333333 | 907 | 84.433667 | 1117 | 5378 | 3 | chr2B.!!$R1 | 4261 |
8 | TraesCS2D01G040400 | chr2B | 26521445 | 26522090 | 645 | False | 536.000000 | 536 | 82.236000 | 4755 | 5385 | 1 | chr2B.!!$F2 | 630 |
9 | TraesCS2D01G040400 | chr2B | 13783415 | 13787650 | 4235 | False | 519.500000 | 763 | 81.611000 | 989 | 4713 | 2 | chr2B.!!$F4 | 3724 |
10 | TraesCS2D01G040400 | chr2B | 13797653 | 13798319 | 666 | False | 424.000000 | 424 | 78.720000 | 4709 | 5357 | 1 | chr2B.!!$F1 | 648 |
11 | TraesCS2D01G040400 | chr5D | 557422537 | 557423329 | 792 | True | 1424.000000 | 1424 | 99.117000 | 5663 | 6454 | 1 | chr5D.!!$R1 | 791 |
12 | TraesCS2D01G040400 | chr5D | 554307192 | 554307993 | 801 | False | 1402.000000 | 1402 | 98.254000 | 5655 | 6454 | 1 | chr5D.!!$F1 | 799 |
13 | TraesCS2D01G040400 | chr3D | 573097096 | 573097889 | 793 | False | 1415.000000 | 1415 | 98.866000 | 5663 | 6454 | 1 | chr3D.!!$F1 | 791 |
14 | TraesCS2D01G040400 | chr3D | 580312290 | 580313080 | 790 | True | 1395.000000 | 1395 | 98.483000 | 5664 | 6454 | 1 | chr3D.!!$R1 | 790 |
15 | TraesCS2D01G040400 | chr7D | 55144141 | 55144933 | 792 | False | 1402.000000 | 1402 | 98.613000 | 5663 | 6454 | 1 | chr7D.!!$F1 | 791 |
16 | TraesCS2D01G040400 | chr7D | 624411934 | 624412727 | 793 | True | 1397.000000 | 1397 | 98.489000 | 5664 | 6454 | 1 | chr7D.!!$R1 | 790 |
17 | TraesCS2D01G040400 | chr1D | 361875700 | 361876491 | 791 | True | 1395.000000 | 1395 | 98.485000 | 5664 | 6454 | 1 | chr1D.!!$R1 | 790 |
18 | TraesCS2D01G040400 | chr6D | 12278824 | 12279617 | 793 | False | 1393.000000 | 1393 | 98.363000 | 5663 | 6454 | 1 | chr6D.!!$F1 | 791 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
823 | 835 | 0.100682 | GCGTGCGAGACAGGAAGATA | 59.899 | 55.000 | 0.00 | 0.00 | 36.20 | 1.98 | F |
1419 | 4042 | 1.376037 | GGTGCTCGACCTTCTTGGG | 60.376 | 63.158 | 0.00 | 0.00 | 42.25 | 4.12 | F |
1641 | 4276 | 2.031163 | GCCACCTTCGCAGTCACT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 | F |
3293 | 8295 | 2.304761 | ACTACATTGTGGAACGGATGGT | 59.695 | 45.455 | 7.20 | 0.00 | 42.39 | 3.55 | F |
4493 | 10859 | 1.818363 | GCTTACCTACCAAGCCGGC | 60.818 | 63.158 | 21.89 | 21.89 | 42.08 | 6.13 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1698 | 4339 | 1.379044 | AAGAAGGCGGCCATCCTTG | 60.379 | 57.895 | 25.97 | 0.00 | 43.54 | 3.61 | R |
3276 | 8278 | 1.533625 | ACACCATCCGTTCCACAATG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 | R |
3368 | 8370 | 4.408921 | TCTTGGATGGTCCGAATAACTCAT | 59.591 | 41.667 | 0.00 | 0.00 | 40.17 | 2.90 | R |
4521 | 10887 | 0.246635 | CCATGAACCTCGTCGTCCTT | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 | R |
5645 | 12229 | 1.003223 | GTGTTTATAATGGGGCGCGAC | 60.003 | 52.381 | 12.10 | 6.99 | 0.00 | 5.19 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 4.441913 | CCAATAATGCAACAGGGAATGACC | 60.442 | 45.833 | 0.00 | 0.00 | 38.08 | 4.02 |
38 | 39 | 2.537633 | ATGCAACAGGGAATGACCAT | 57.462 | 45.000 | 0.00 | 0.00 | 41.20 | 3.55 |
40 | 41 | 1.355381 | TGCAACAGGGAATGACCATCT | 59.645 | 47.619 | 0.00 | 0.00 | 41.20 | 2.90 |
42 | 43 | 2.618816 | GCAACAGGGAATGACCATCTCA | 60.619 | 50.000 | 0.00 | 0.00 | 41.20 | 3.27 |
44 | 45 | 4.686944 | GCAACAGGGAATGACCATCTCATA | 60.687 | 45.833 | 0.00 | 0.00 | 38.82 | 2.15 |
47 | 48 | 4.723789 | ACAGGGAATGACCATCTCATAAGT | 59.276 | 41.667 | 0.00 | 0.00 | 38.82 | 2.24 |
50 | 51 | 6.268617 | CAGGGAATGACCATCTCATAAGTAGA | 59.731 | 42.308 | 0.00 | 0.00 | 38.82 | 2.59 |
51 | 52 | 6.496565 | AGGGAATGACCATCTCATAAGTAGAG | 59.503 | 42.308 | 0.00 | 0.00 | 38.82 | 2.43 |
53 | 54 | 6.014669 | GGAATGACCATCTCATAAGTAGAGCT | 60.015 | 42.308 | 0.00 | 0.00 | 38.82 | 4.09 |
55 | 56 | 5.449553 | TGACCATCTCATAAGTAGAGCTGA | 58.550 | 41.667 | 0.00 | 0.00 | 32.48 | 4.26 |
56 | 57 | 6.073981 | TGACCATCTCATAAGTAGAGCTGAT | 58.926 | 40.000 | 0.00 | 0.00 | 32.48 | 2.90 |
59 | 60 | 7.215789 | ACCATCTCATAAGTAGAGCTGATTTG | 58.784 | 38.462 | 0.00 | 0.00 | 32.48 | 2.32 |
62 | 63 | 6.810911 | TCTCATAAGTAGAGCTGATTTGGAC | 58.189 | 40.000 | 0.00 | 0.00 | 33.15 | 4.02 |
66 | 67 | 8.704668 | TCATAAGTAGAGCTGATTTGGACAATA | 58.295 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
69 | 70 | 8.814038 | AAGTAGAGCTGATTTGGACAATAATT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
71 | 72 | 8.049117 | AGTAGAGCTGATTTGGACAATAATTCA | 58.951 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
73 | 74 | 7.542025 | AGAGCTGATTTGGACAATAATTCAAC | 58.458 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
75 | 76 | 5.812127 | GCTGATTTGGACAATAATTCAACCC | 59.188 | 40.000 | 0.00 | 0.00 | 0.00 | 4.11 |
76 | 77 | 5.960113 | TGATTTGGACAATAATTCAACCCG | 58.040 | 37.500 | 0.00 | 0.00 | 0.00 | 5.28 |
78 | 79 | 3.722908 | TGGACAATAATTCAACCCGGA | 57.277 | 42.857 | 0.73 | 0.00 | 0.00 | 5.14 |
79 | 80 | 4.035612 | TGGACAATAATTCAACCCGGAA | 57.964 | 40.909 | 0.73 | 0.00 | 0.00 | 4.30 |
80 | 81 | 3.759618 | TGGACAATAATTCAACCCGGAAC | 59.240 | 43.478 | 0.73 | 0.00 | 0.00 | 3.62 |
82 | 83 | 3.093814 | ACAATAATTCAACCCGGAACCC | 58.906 | 45.455 | 0.73 | 0.00 | 0.00 | 4.11 |
95 | 96 | 1.375908 | GAACCCGAGCTCACATGCA | 60.376 | 57.895 | 15.40 | 0.00 | 34.99 | 3.96 |
96 | 97 | 1.639298 | GAACCCGAGCTCACATGCAC | 61.639 | 60.000 | 15.40 | 0.00 | 34.99 | 4.57 |
98 | 99 | 2.267006 | CCGAGCTCACATGCACCT | 59.733 | 61.111 | 15.40 | 0.00 | 34.99 | 4.00 |
99 | 100 | 2.104859 | CCGAGCTCACATGCACCTG | 61.105 | 63.158 | 15.40 | 0.00 | 34.99 | 4.00 |
100 | 101 | 2.104859 | CGAGCTCACATGCACCTGG | 61.105 | 63.158 | 15.40 | 0.00 | 34.99 | 4.45 |
101 | 102 | 1.002868 | GAGCTCACATGCACCTGGT | 60.003 | 57.895 | 9.40 | 0.00 | 34.99 | 4.00 |
102 | 103 | 1.303074 | AGCTCACATGCACCTGGTG | 60.303 | 57.895 | 22.46 | 22.46 | 36.51 | 4.17 |
103 | 104 | 1.302752 | GCTCACATGCACCTGGTGA | 60.303 | 57.895 | 30.23 | 15.26 | 39.09 | 4.02 |
105 | 106 | 1.830279 | CTCACATGCACCTGGTGAAT | 58.170 | 50.000 | 30.23 | 22.86 | 40.67 | 2.57 |
106 | 107 | 2.940971 | GCTCACATGCACCTGGTGAATA | 60.941 | 50.000 | 30.23 | 15.21 | 40.67 | 1.75 |
107 | 108 | 2.941064 | CTCACATGCACCTGGTGAATAG | 59.059 | 50.000 | 30.23 | 19.59 | 40.67 | 1.73 |
109 | 110 | 3.517500 | TCACATGCACCTGGTGAATAGTA | 59.482 | 43.478 | 30.23 | 10.60 | 38.50 | 1.82 |
111 | 112 | 4.699735 | CACATGCACCTGGTGAATAGTAAA | 59.300 | 41.667 | 30.23 | 4.91 | 35.23 | 2.01 |
112 | 113 | 5.182950 | CACATGCACCTGGTGAATAGTAAAA | 59.817 | 40.000 | 30.23 | 3.91 | 35.23 | 1.52 |
115 | 116 | 7.613801 | ACATGCACCTGGTGAATAGTAAAATAA | 59.386 | 33.333 | 30.23 | 0.00 | 35.23 | 1.40 |
116 | 117 | 8.632679 | CATGCACCTGGTGAATAGTAAAATAAT | 58.367 | 33.333 | 30.23 | 0.00 | 35.23 | 1.28 |
154 | 155 | 8.572855 | AAAAATCCAAATTCTTTTTGTGGTGA | 57.427 | 26.923 | 0.00 | 0.00 | 32.46 | 4.02 |
158 | 159 | 6.940739 | TCCAAATTCTTTTTGTGGTGAAAGA | 58.059 | 32.000 | 0.00 | 0.00 | 39.42 | 2.52 |
161 | 162 | 6.849588 | AATTCTTTTTGTGGTGAAAGATGC | 57.150 | 33.333 | 0.00 | 0.00 | 40.44 | 3.91 |
165 | 166 | 4.933505 | TTTTGTGGTGAAAGATGCATGA | 57.066 | 36.364 | 2.46 | 0.00 | 0.00 | 3.07 |
166 | 167 | 4.508461 | TTTGTGGTGAAAGATGCATGAG | 57.492 | 40.909 | 2.46 | 0.00 | 0.00 | 2.90 |
167 | 168 | 3.144657 | TGTGGTGAAAGATGCATGAGT | 57.855 | 42.857 | 2.46 | 0.00 | 0.00 | 3.41 |
168 | 169 | 2.815503 | TGTGGTGAAAGATGCATGAGTG | 59.184 | 45.455 | 2.46 | 0.00 | 0.00 | 3.51 |
169 | 170 | 2.163010 | GTGGTGAAAGATGCATGAGTGG | 59.837 | 50.000 | 2.46 | 0.00 | 0.00 | 4.00 |
170 | 171 | 1.747355 | GGTGAAAGATGCATGAGTGGG | 59.253 | 52.381 | 2.46 | 0.00 | 0.00 | 4.61 |
171 | 172 | 2.440409 | GTGAAAGATGCATGAGTGGGT | 58.560 | 47.619 | 2.46 | 0.00 | 0.00 | 4.51 |
175 | 176 | 2.343484 | AGATGCATGAGTGGGTGATG | 57.657 | 50.000 | 2.46 | 0.00 | 0.00 | 3.07 |
176 | 177 | 1.562942 | AGATGCATGAGTGGGTGATGT | 59.437 | 47.619 | 2.46 | 0.00 | 0.00 | 3.06 |
177 | 178 | 2.025605 | AGATGCATGAGTGGGTGATGTT | 60.026 | 45.455 | 2.46 | 0.00 | 0.00 | 2.71 |
179 | 180 | 0.729116 | GCATGAGTGGGTGATGTTCG | 59.271 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
186 | 187 | 0.109532 | TGGGTGATGTTCGAGCCAAA | 59.890 | 50.000 | 0.00 | 0.00 | 36.80 | 3.28 |
187 | 188 | 1.271871 | TGGGTGATGTTCGAGCCAAAT | 60.272 | 47.619 | 0.00 | 0.00 | 36.80 | 2.32 |
188 | 189 | 1.818674 | GGGTGATGTTCGAGCCAAATT | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
190 | 191 | 3.501950 | GGTGATGTTCGAGCCAAATTTC | 58.498 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
191 | 192 | 3.057596 | GGTGATGTTCGAGCCAAATTTCA | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
194 | 195 | 4.154737 | TGATGTTCGAGCCAAATTTCAGAG | 59.845 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
195 | 196 | 2.226437 | TGTTCGAGCCAAATTTCAGAGC | 59.774 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
196 | 197 | 2.183478 | TCGAGCCAAATTTCAGAGCA | 57.817 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
197 | 198 | 2.715046 | TCGAGCCAAATTTCAGAGCAT | 58.285 | 42.857 | 0.00 | 0.00 | 0.00 | 3.79 |
198 | 199 | 3.084039 | TCGAGCCAAATTTCAGAGCATT | 58.916 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
199 | 200 | 3.507233 | TCGAGCCAAATTTCAGAGCATTT | 59.493 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
200 | 201 | 4.699735 | TCGAGCCAAATTTCAGAGCATTTA | 59.300 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
201 | 202 | 5.032863 | CGAGCCAAATTTCAGAGCATTTAG | 58.967 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
202 | 203 | 5.334724 | AGCCAAATTTCAGAGCATTTAGG | 57.665 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
204 | 205 | 4.621274 | GCCAAATTTCAGAGCATTTAGGCA | 60.621 | 41.667 | 16.20 | 0.00 | 36.99 | 4.75 |
206 | 207 | 6.110707 | CCAAATTTCAGAGCATTTAGGCATT | 58.889 | 36.000 | 0.00 | 0.00 | 35.83 | 3.56 |
207 | 208 | 6.596497 | CCAAATTTCAGAGCATTTAGGCATTT | 59.404 | 34.615 | 0.00 | 0.00 | 35.83 | 2.32 |
208 | 209 | 7.413657 | CCAAATTTCAGAGCATTTAGGCATTTG | 60.414 | 37.037 | 0.00 | 0.00 | 33.25 | 2.32 |
209 | 210 | 5.981088 | TTTCAGAGCATTTAGGCATTTGA | 57.019 | 34.783 | 0.00 | 0.00 | 35.83 | 2.69 |
210 | 211 | 5.571784 | TTCAGAGCATTTAGGCATTTGAG | 57.428 | 39.130 | 0.00 | 0.00 | 35.83 | 3.02 |
211 | 212 | 3.379372 | TCAGAGCATTTAGGCATTTGAGC | 59.621 | 43.478 | 0.00 | 0.00 | 35.83 | 4.26 |
212 | 213 | 3.129813 | CAGAGCATTTAGGCATTTGAGCA | 59.870 | 43.478 | 0.00 | 0.00 | 35.83 | 4.26 |
213 | 214 | 3.380637 | AGAGCATTTAGGCATTTGAGCAG | 59.619 | 43.478 | 0.00 | 0.00 | 35.83 | 4.24 |
215 | 216 | 2.159142 | GCATTTAGGCATTTGAGCAGCT | 60.159 | 45.455 | 0.00 | 0.00 | 35.83 | 4.24 |
216 | 217 | 3.703420 | CATTTAGGCATTTGAGCAGCTC | 58.297 | 45.455 | 16.21 | 16.21 | 35.83 | 4.09 |
217 | 218 | 2.795231 | TTAGGCATTTGAGCAGCTCT | 57.205 | 45.000 | 23.15 | 3.66 | 35.83 | 4.09 |
218 | 219 | 2.795231 | TAGGCATTTGAGCAGCTCTT | 57.205 | 45.000 | 23.15 | 5.67 | 35.83 | 2.85 |
219 | 220 | 2.795231 | AGGCATTTGAGCAGCTCTTA | 57.205 | 45.000 | 23.15 | 11.30 | 35.83 | 2.10 |
221 | 222 | 1.065251 | GGCATTTGAGCAGCTCTTAGC | 59.935 | 52.381 | 23.15 | 19.21 | 42.84 | 3.09 |
257 | 258 | 8.514330 | AAATCAGGTCTAAACAGTACAAAACA | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
258 | 259 | 7.730364 | ATCAGGTCTAAACAGTACAAAACAG | 57.270 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
259 | 260 | 6.646267 | TCAGGTCTAAACAGTACAAAACAGT | 58.354 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
260 | 261 | 7.784037 | TCAGGTCTAAACAGTACAAAACAGTA | 58.216 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
261 | 262 | 8.259411 | TCAGGTCTAAACAGTACAAAACAGTAA | 58.741 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
262 | 263 | 8.885722 | CAGGTCTAAACAGTACAAAACAGTAAA | 58.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
263 | 264 | 8.886719 | AGGTCTAAACAGTACAAAACAGTAAAC | 58.113 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
270 | 271 | 9.968870 | AACAGTACAAAACAGTAAACTTTTTCA | 57.031 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
271 | 272 | 9.401873 | ACAGTACAAAACAGTAAACTTTTTCAC | 57.598 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
276 | 277 | 9.361315 | ACAAAACAGTAAACTTTTTCACATACC | 57.639 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
278 | 279 | 7.891498 | AACAGTAAACTTTTTCACATACCCT | 57.109 | 32.000 | 0.00 | 0.00 | 0.00 | 4.34 |
280 | 281 | 8.983702 | ACAGTAAACTTTTTCACATACCCTAA | 57.016 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
281 | 282 | 9.582648 | ACAGTAAACTTTTTCACATACCCTAAT | 57.417 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
287 | 288 | 9.758651 | AACTTTTTCACATACCCTAATTTTGTC | 57.241 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
310 | 311 | 4.422073 | TTTTTGCTGAAGTCTCCTCAGA | 57.578 | 40.909 | 5.83 | 0.00 | 33.65 | 3.27 |
311 | 312 | 4.630644 | TTTTGCTGAAGTCTCCTCAGAT | 57.369 | 40.909 | 5.83 | 0.00 | 33.65 | 2.90 |
312 | 313 | 3.606595 | TTGCTGAAGTCTCCTCAGATG | 57.393 | 47.619 | 5.83 | 0.00 | 33.65 | 2.90 |
313 | 314 | 2.533916 | TGCTGAAGTCTCCTCAGATGT | 58.466 | 47.619 | 5.83 | 0.00 | 33.65 | 3.06 |
314 | 315 | 2.495270 | TGCTGAAGTCTCCTCAGATGTC | 59.505 | 50.000 | 5.83 | 0.00 | 33.65 | 3.06 |
317 | 318 | 3.510459 | TGAAGTCTCCTCAGATGTCCAA | 58.490 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
318 | 319 | 3.903714 | TGAAGTCTCCTCAGATGTCCAAA | 59.096 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
319 | 320 | 4.533707 | TGAAGTCTCCTCAGATGTCCAAAT | 59.466 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
320 | 321 | 4.484537 | AGTCTCCTCAGATGTCCAAATG | 57.515 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
322 | 323 | 4.288105 | AGTCTCCTCAGATGTCCAAATGTT | 59.712 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
323 | 324 | 4.633565 | GTCTCCTCAGATGTCCAAATGTTC | 59.366 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
325 | 326 | 4.836825 | TCCTCAGATGTCCAAATGTTCTC | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
326 | 327 | 4.286808 | TCCTCAGATGTCCAAATGTTCTCA | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
327 | 328 | 5.005740 | CCTCAGATGTCCAAATGTTCTCAA | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
328 | 329 | 5.474532 | CCTCAGATGTCCAAATGTTCTCAAA | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
329 | 330 | 6.152323 | CCTCAGATGTCCAAATGTTCTCAAAT | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
330 | 331 | 7.309621 | CCTCAGATGTCCAAATGTTCTCAAATT | 60.310 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
331 | 332 | 7.954835 | TCAGATGTCCAAATGTTCTCAAATTT | 58.045 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
332 | 333 | 7.868922 | TCAGATGTCCAAATGTTCTCAAATTTG | 59.131 | 33.333 | 12.15 | 12.15 | 41.41 | 2.32 |
337 | 338 | 5.009048 | CAAATGTTCTCAAATTTGGCACG | 57.991 | 39.130 | 17.90 | 5.11 | 39.19 | 5.34 |
338 | 339 | 4.582701 | AATGTTCTCAAATTTGGCACGA | 57.417 | 36.364 | 17.90 | 7.20 | 0.00 | 4.35 |
339 | 340 | 4.582701 | ATGTTCTCAAATTTGGCACGAA | 57.417 | 36.364 | 17.90 | 12.09 | 0.00 | 3.85 |
341 | 342 | 3.129462 | TGTTCTCAAATTTGGCACGAACA | 59.871 | 39.130 | 24.95 | 24.95 | 37.51 | 3.18 |
344 | 345 | 3.567585 | TCTCAAATTTGGCACGAACATCA | 59.432 | 39.130 | 17.90 | 0.00 | 0.00 | 3.07 |
345 | 346 | 3.637432 | TCAAATTTGGCACGAACATCAC | 58.363 | 40.909 | 17.90 | 0.00 | 0.00 | 3.06 |
346 | 347 | 2.330231 | AATTTGGCACGAACATCACG | 57.670 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
347 | 348 | 0.109781 | ATTTGGCACGAACATCACGC | 60.110 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
348 | 349 | 1.440145 | TTTGGCACGAACATCACGCA | 61.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
349 | 350 | 1.233950 | TTGGCACGAACATCACGCAT | 61.234 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
350 | 351 | 1.233950 | TGGCACGAACATCACGCATT | 61.234 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
352 | 353 | 0.165727 | GCACGAACATCACGCATTCA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
353 | 354 | 1.399599 | GCACGAACATCACGCATTCAA | 60.400 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
354 | 355 | 2.728846 | GCACGAACATCACGCATTCAAT | 60.729 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
355 | 356 | 3.093574 | CACGAACATCACGCATTCAATC | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
356 | 357 | 2.741517 | ACGAACATCACGCATTCAATCA | 59.258 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
357 | 358 | 3.374988 | ACGAACATCACGCATTCAATCAT | 59.625 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
358 | 359 | 3.964347 | CGAACATCACGCATTCAATCATC | 59.036 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
359 | 360 | 4.260497 | CGAACATCACGCATTCAATCATCT | 60.260 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
360 | 361 | 5.571784 | AACATCACGCATTCAATCATCTT | 57.428 | 34.783 | 0.00 | 0.00 | 0.00 | 2.40 |
361 | 362 | 5.571784 | ACATCACGCATTCAATCATCTTT | 57.428 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
362 | 363 | 5.575957 | ACATCACGCATTCAATCATCTTTC | 58.424 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
363 | 364 | 5.124297 | ACATCACGCATTCAATCATCTTTCA | 59.876 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
364 | 365 | 4.973396 | TCACGCATTCAATCATCTTTCAC | 58.027 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
365 | 366 | 4.100529 | CACGCATTCAATCATCTTTCACC | 58.899 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
366 | 367 | 3.758023 | ACGCATTCAATCATCTTTCACCA | 59.242 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
369 | 370 | 5.472148 | GCATTCAATCATCTTTCACCACAA | 58.528 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
370 | 371 | 5.927689 | GCATTCAATCATCTTTCACCACAAA | 59.072 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
372 | 373 | 7.041916 | GCATTCAATCATCTTTCACCACAAAAA | 60.042 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
429 | 430 | 2.752354 | TGATTTTACTGTTCATGCCCGG | 59.248 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
430 | 431 | 2.279935 | TTTTACTGTTCATGCCCGGT | 57.720 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
431 | 432 | 1.816074 | TTTACTGTTCATGCCCGGTC | 58.184 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
433 | 434 | 1.855295 | TACTGTTCATGCCCGGTCTA | 58.145 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
434 | 435 | 0.981183 | ACTGTTCATGCCCGGTCTAA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
438 | 439 | 2.213499 | GTTCATGCCCGGTCTAATCTG | 58.787 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
439 | 440 | 1.788229 | TCATGCCCGGTCTAATCTGA | 58.212 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
440 | 441 | 1.688735 | TCATGCCCGGTCTAATCTGAG | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
441 | 442 | 0.394565 | ATGCCCGGTCTAATCTGAGC | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
443 | 444 | 1.749033 | CCCGGTCTAATCTGAGCCC | 59.251 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
446 | 447 | 1.749033 | GGTCTAATCTGAGCCCGGG | 59.251 | 63.158 | 19.09 | 19.09 | 0.00 | 5.73 |
448 | 449 | 0.676736 | GTCTAATCTGAGCCCGGGAG | 59.323 | 60.000 | 29.31 | 13.93 | 0.00 | 4.30 |
449 | 450 | 1.115930 | TCTAATCTGAGCCCGGGAGC | 61.116 | 60.000 | 29.31 | 16.09 | 0.00 | 4.70 |
450 | 451 | 2.105806 | CTAATCTGAGCCCGGGAGCC | 62.106 | 65.000 | 29.31 | 12.80 | 0.00 | 4.70 |
454 | 455 | 3.338250 | TGAGCCCGGGAGCCAAAT | 61.338 | 61.111 | 29.31 | 0.00 | 0.00 | 2.32 |
455 | 456 | 2.517166 | GAGCCCGGGAGCCAAATC | 60.517 | 66.667 | 29.31 | 2.84 | 0.00 | 2.17 |
456 | 457 | 4.489771 | AGCCCGGGAGCCAAATCG | 62.490 | 66.667 | 29.31 | 0.00 | 0.00 | 3.34 |
458 | 459 | 4.489771 | CCCGGGAGCCAAATCGCT | 62.490 | 66.667 | 18.48 | 0.00 | 43.42 | 4.93 |
459 | 460 | 2.438434 | CCGGGAGCCAAATCGCTT | 60.438 | 61.111 | 0.00 | 0.00 | 39.87 | 4.68 |
460 | 461 | 2.046285 | CCGGGAGCCAAATCGCTTT | 61.046 | 57.895 | 0.00 | 0.00 | 39.87 | 3.51 |
461 | 462 | 1.595093 | CCGGGAGCCAAATCGCTTTT | 61.595 | 55.000 | 0.00 | 0.00 | 39.87 | 2.27 |
462 | 463 | 0.243636 | CGGGAGCCAAATCGCTTTTT | 59.756 | 50.000 | 0.00 | 0.00 | 39.87 | 1.94 |
487 | 488 | 2.804527 | GTTTTGGACTACAACCGGAGAC | 59.195 | 50.000 | 9.46 | 0.00 | 39.19 | 3.36 |
488 | 489 | 1.707106 | TTGGACTACAACCGGAGACA | 58.293 | 50.000 | 9.46 | 0.00 | 33.18 | 3.41 |
503 | 504 | 1.154338 | GACAGCATGCTTCGTGTGC | 60.154 | 57.895 | 19.98 | 4.69 | 42.53 | 4.57 |
510 | 511 | 2.396601 | CATGCTTCGTGTGCAAAACAT | 58.603 | 42.857 | 0.00 | 0.00 | 44.01 | 2.71 |
514 | 515 | 4.424626 | TGCTTCGTGTGCAAAACATAAAA | 58.575 | 34.783 | 0.00 | 0.00 | 41.97 | 1.52 |
515 | 516 | 5.046529 | TGCTTCGTGTGCAAAACATAAAAT | 58.953 | 33.333 | 0.00 | 0.00 | 41.97 | 1.82 |
519 | 520 | 7.735586 | GCTTCGTGTGCAAAACATAAAATTTAG | 59.264 | 33.333 | 0.00 | 0.00 | 41.97 | 1.85 |
525 | 526 | 7.384660 | TGTGCAAAACATAAAATTTAGCTCCTG | 59.615 | 33.333 | 0.00 | 0.00 | 32.36 | 3.86 |
550 | 551 | 5.794894 | TCTTGTTGGAGAGGTCATTACTTC | 58.205 | 41.667 | 0.00 | 0.00 | 32.02 | 3.01 |
553 | 554 | 2.176045 | TGGAGAGGTCATTACTTCGCA | 58.824 | 47.619 | 0.00 | 0.00 | 36.84 | 5.10 |
564 | 573 | 5.179555 | GTCATTACTTCGCACTTTTTCTCCT | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
572 | 581 | 3.604772 | CGCACTTTTTCTCCTCTTGAACG | 60.605 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
578 | 587 | 5.734855 | TTTTCTCCTCTTGAACGAACTTG | 57.265 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
590 | 599 | 2.631267 | ACGAACTTGGTAACGGTTTGT | 58.369 | 42.857 | 0.00 | 4.18 | 41.52 | 2.83 |
602 | 611 | 1.577328 | CGGTTTGTTGGCGATGCTCT | 61.577 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
611 | 620 | 0.654683 | GGCGATGCTCTTGTCATCAC | 59.345 | 55.000 | 4.22 | 0.00 | 40.11 | 3.06 |
630 | 639 | 8.287503 | GTCATCACAAATTTAAAAGACTACCGT | 58.712 | 33.333 | 0.00 | 0.00 | 0.00 | 4.83 |
634 | 643 | 5.179929 | ACAAATTTAAAAGACTACCGTCCGG | 59.820 | 40.000 | 3.76 | 3.76 | 41.16 | 5.14 |
638 | 647 | 0.896940 | AAAGACTACCGTCCGGCTCA | 60.897 | 55.000 | 5.47 | 0.00 | 41.16 | 4.26 |
646 | 655 | 0.378257 | CCGTCCGGCTCATTGATTTG | 59.622 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
663 | 672 | 4.527427 | TGATTTGTCATTCCCAGCAAATGA | 59.473 | 37.500 | 6.15 | 0.00 | 40.34 | 2.57 |
673 | 685 | 1.250328 | CAGCAAATGAGACCTGCCAA | 58.750 | 50.000 | 0.00 | 0.00 | 36.73 | 4.52 |
679 | 691 | 0.610232 | ATGAGACCTGCCAACTTGCC | 60.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
683 | 695 | 0.324943 | GACCTGCCAACTTGCCTCTA | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
684 | 696 | 0.326264 | ACCTGCCAACTTGCCTCTAG | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
686 | 698 | 1.677217 | CCTGCCAACTTGCCTCTAGTC | 60.677 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
692 | 704 | 2.464157 | ACTTGCCTCTAGTCAGTTGC | 57.536 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
744 | 756 | 6.173339 | CAATTCTACAAGGACAGGTACATGT | 58.827 | 40.000 | 13.90 | 13.90 | 35.68 | 3.21 |
750 | 762 | 1.825474 | AGGACAGGTACATGTTCTCCG | 59.175 | 52.381 | 15.72 | 4.58 | 33.51 | 4.63 |
764 | 776 | 7.106239 | ACATGTTCTCCGATCTTTAGTCAATT | 58.894 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
765 | 777 | 7.607991 | ACATGTTCTCCGATCTTTAGTCAATTT | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
766 | 778 | 7.979444 | TGTTCTCCGATCTTTAGTCAATTTT | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
767 | 779 | 9.667107 | ATGTTCTCCGATCTTTAGTCAATTTTA | 57.333 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
768 | 780 | 9.496873 | TGTTCTCCGATCTTTAGTCAATTTTAA | 57.503 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
771 | 783 | 9.938280 | TCTCCGATCTTTAGTCAATTTTAAAGA | 57.062 | 29.630 | 14.27 | 14.27 | 45.05 | 2.52 |
823 | 835 | 0.100682 | GCGTGCGAGACAGGAAGATA | 59.899 | 55.000 | 0.00 | 0.00 | 36.20 | 1.98 |
835 | 847 | 5.122396 | AGACAGGAAGATAAACGTGATTTGC | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
842 | 854 | 7.061789 | GGAAGATAAACGTGATTTGCGAAAAAT | 59.938 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
843 | 855 | 7.264448 | AGATAAACGTGATTTGCGAAAAATG | 57.736 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
844 | 856 | 3.769009 | AACGTGATTTGCGAAAAATGC | 57.231 | 38.095 | 0.00 | 0.00 | 0.00 | 3.56 |
845 | 857 | 2.736978 | ACGTGATTTGCGAAAAATGCA | 58.263 | 38.095 | 0.00 | 0.00 | 41.38 | 3.96 |
918 | 3526 | 4.643334 | GGGGTATAAAATCGCCAAGTCTTT | 59.357 | 41.667 | 0.00 | 0.00 | 36.79 | 2.52 |
932 | 3540 | 3.199880 | AGTCTTTTGGTCTGGTCACAG | 57.800 | 47.619 | 0.00 | 0.00 | 46.30 | 3.66 |
955 | 3563 | 5.470437 | AGAAACAAACTAGCTAGAAGCAACC | 59.530 | 40.000 | 27.45 | 10.70 | 45.56 | 3.77 |
957 | 3565 | 4.065789 | ACAAACTAGCTAGAAGCAACCAC | 58.934 | 43.478 | 27.45 | 0.00 | 45.56 | 4.16 |
1032 | 3648 | 2.028203 | GGATCTCCCAGCTAGCAAGATC | 60.028 | 54.545 | 25.67 | 25.67 | 40.93 | 2.75 |
1214 | 3837 | 3.160047 | CGGAGGAGCCTGGCAGAT | 61.160 | 66.667 | 22.65 | 3.62 | 0.00 | 2.90 |
1290 | 3913 | 4.802051 | TACCGCCGGTACCTCGCT | 62.802 | 66.667 | 12.92 | 3.60 | 37.09 | 4.93 |
1419 | 4042 | 1.376037 | GGTGCTCGACCTTCTTGGG | 60.376 | 63.158 | 0.00 | 0.00 | 42.25 | 4.12 |
1614 | 4249 | 2.738587 | AGGAGAAGATCGAGGTGCTA | 57.261 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1618 | 4253 | 3.068873 | GGAGAAGATCGAGGTGCTAATGT | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
1641 | 4276 | 2.031163 | GCCACCTTCGCAGTCACT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
2059 | 4712 | 7.984422 | ATCAAGAACATGTGTGATAGTTTCA | 57.016 | 32.000 | 14.94 | 0.00 | 0.00 | 2.69 |
2292 | 6585 | 6.038603 | TGAAAGCCTCATGGAGAAAAATATCG | 59.961 | 38.462 | 0.00 | 0.00 | 34.57 | 2.92 |
2554 | 7517 | 4.702131 | ACAAGTTGAGGATACCTTGATTGC | 59.298 | 41.667 | 10.54 | 0.00 | 38.11 | 3.56 |
2824 | 7824 | 5.297029 | ACACAACTAAACAAGGAAAGAGAGC | 59.703 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2885 | 7885 | 8.132995 | AGTATGTGACATGCATGACAATAAATG | 58.867 | 33.333 | 32.75 | 4.22 | 34.54 | 2.32 |
2919 | 7919 | 5.815233 | ACCAAGCTATGATACTATGCACT | 57.185 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
2920 | 7920 | 5.545588 | ACCAAGCTATGATACTATGCACTG | 58.454 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2922 | 7922 | 6.267699 | ACCAAGCTATGATACTATGCACTGTA | 59.732 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
3038 | 8038 | 3.581755 | TGACGCGGGCATTTATATACTC | 58.418 | 45.455 | 12.47 | 0.00 | 0.00 | 2.59 |
3043 | 8043 | 4.034048 | CGCGGGCATTTATATACTCCATTC | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
3068 | 8068 | 9.657419 | TCCATAATGTAGTGCATATAGATTGTG | 57.343 | 33.333 | 15.28 | 15.28 | 36.67 | 3.33 |
3096 | 8097 | 9.628746 | TTAACTCAAACTTTACAAACTTTGACC | 57.371 | 29.630 | 8.55 | 0.00 | 31.80 | 4.02 |
3229 | 8231 | 9.809096 | ATGTATGTATCTGTCTCTACAAACTTG | 57.191 | 33.333 | 0.00 | 0.00 | 34.49 | 3.16 |
3293 | 8295 | 2.304761 | ACTACATTGTGGAACGGATGGT | 59.695 | 45.455 | 7.20 | 0.00 | 42.39 | 3.55 |
3508 | 9016 | 6.986231 | ACATGTCAAAAGATTCCAAGTTTTCC | 59.014 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
4100 | 10142 | 2.110213 | TTCCTGTTGAAGCGCCGT | 59.890 | 55.556 | 2.29 | 0.00 | 0.00 | 5.68 |
4394 | 10745 | 2.180308 | AGTGGTATTAGGAGGAGGAGGG | 59.820 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
4401 | 10752 | 2.612251 | GAGGAGGAGGGGGAGGAG | 59.388 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
4493 | 10859 | 1.818363 | GCTTACCTACCAAGCCGGC | 60.818 | 63.158 | 21.89 | 21.89 | 42.08 | 6.13 |
4494 | 10860 | 1.905512 | CTTACCTACCAAGCCGGCT | 59.094 | 57.895 | 27.08 | 27.08 | 39.03 | 5.52 |
4534 | 10900 | 1.301479 | GGCAAAAGGACGACGAGGT | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
4535 | 10901 | 0.883370 | GGCAAAAGGACGACGAGGTT | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4715 | 11081 | 4.088762 | CACGTGTGCATGGCGGTC | 62.089 | 66.667 | 7.58 | 0.00 | 0.00 | 4.79 |
4736 | 11102 | 1.430632 | CATGTTCGCACTCATGGGC | 59.569 | 57.895 | 0.00 | 0.00 | 38.64 | 5.36 |
4793 | 11159 | 3.068165 | CCTCCATCTATGTGTTGACGCTA | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
4802 | 11168 | 0.242555 | TGTTGACGCTAGTGATCGCA | 59.757 | 50.000 | 10.99 | 4.95 | 0.00 | 5.10 |
5381 | 11937 | 7.096023 | GCAGCAATAGTGGCGATATACATATAC | 60.096 | 40.741 | 0.00 | 0.00 | 36.08 | 1.47 |
5382 | 11938 | 7.920682 | CAGCAATAGTGGCGATATACATATACA | 59.079 | 37.037 | 0.00 | 0.00 | 36.08 | 2.29 |
5383 | 11939 | 8.642432 | AGCAATAGTGGCGATATACATATACAT | 58.358 | 33.333 | 0.00 | 0.00 | 36.08 | 2.29 |
5384 | 11940 | 8.916654 | GCAATAGTGGCGATATACATATACATC | 58.083 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
5387 | 11943 | 7.646548 | AGTGGCGATATACATATACATCTGT | 57.353 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5388 | 11944 | 8.747538 | AGTGGCGATATACATATACATCTGTA | 57.252 | 34.615 | 0.00 | 0.00 | 34.67 | 2.74 |
5389 | 11945 | 9.185680 | AGTGGCGATATACATATACATCTGTAA | 57.814 | 33.333 | 0.00 | 0.00 | 33.76 | 2.41 |
5444 | 12016 | 1.476085 | CAGGCAGACCAACAAACAACA | 59.524 | 47.619 | 0.00 | 0.00 | 39.06 | 3.33 |
5467 | 12039 | 1.825474 | CGCTTAGTCTCCCTCTTGGAA | 59.175 | 52.381 | 0.00 | 0.00 | 44.57 | 3.53 |
5473 | 12045 | 7.310113 | CGCTTAGTCTCCCTCTTGGAAATATAT | 60.310 | 40.741 | 0.00 | 0.00 | 44.57 | 0.86 |
5475 | 12047 | 6.597832 | AGTCTCCCTCTTGGAAATATATCG | 57.402 | 41.667 | 0.00 | 0.00 | 44.57 | 2.92 |
5500 | 12072 | 7.270365 | CGTGTGTATTATTCGCATGAAAAACTT | 59.730 | 33.333 | 0.00 | 0.00 | 37.71 | 2.66 |
5542 | 12114 | 1.092921 | TGTGGACCGAGTTGTTGTGC | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
5589 | 12165 | 7.383300 | CACTGTCATTTCTTCATTTTCTTTCCC | 59.617 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
5592 | 12168 | 7.147759 | TGTCATTTCTTCATTTTCTTTCCCACA | 60.148 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
5593 | 12169 | 7.383300 | GTCATTTCTTCATTTTCTTTCCCACAG | 59.617 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
5620 | 12196 | 1.804151 | GCTAGGTCAACATTGTTCGCA | 59.196 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
5629 | 12205 | 1.340889 | ACATTGTTCGCACTGGCAAAT | 59.659 | 42.857 | 0.00 | 0.00 | 41.24 | 2.32 |
5637 | 12221 | 3.616219 | TCGCACTGGCAAATTAAGGTAT | 58.384 | 40.909 | 0.00 | 0.00 | 41.24 | 2.73 |
5645 | 12229 | 8.281893 | CACTGGCAAATTAAGGTATTTTTGTTG | 58.718 | 33.333 | 0.00 | 0.00 | 32.88 | 3.33 |
5655 | 12239 | 1.739338 | ATTTTTGTTGTCGCGCCCCA | 61.739 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5661 | 12245 | 1.301423 | GTTGTCGCGCCCCATTATAA | 58.699 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
6270 | 16004 | 7.359014 | GCATATAAATTTCTTCGTCCTCGGTAC | 60.359 | 40.741 | 0.00 | 0.00 | 37.69 | 3.34 |
6402 | 19709 | 0.240145 | CTTCCGCACGCTATCCGATA | 59.760 | 55.000 | 0.00 | 0.00 | 41.02 | 2.92 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 8.004215 | TGTTGCATTATTGGAGTAGGGATTAAT | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1 | 2 | 7.350382 | TGTTGCATTATTGGAGTAGGGATTAA | 58.650 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3 | 4 | 5.765510 | TGTTGCATTATTGGAGTAGGGATT | 58.234 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
4 | 5 | 5.380043 | CTGTTGCATTATTGGAGTAGGGAT | 58.620 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
5 | 6 | 4.385199 | CCTGTTGCATTATTGGAGTAGGGA | 60.385 | 45.833 | 0.00 | 0.00 | 29.93 | 4.20 |
6 | 7 | 3.885297 | CCTGTTGCATTATTGGAGTAGGG | 59.115 | 47.826 | 0.00 | 0.00 | 29.93 | 3.53 |
36 | 37 | 7.384660 | GTCCAAATCAGCTCTACTTATGAGATG | 59.615 | 40.741 | 3.02 | 3.02 | 45.86 | 2.90 |
38 | 39 | 6.381133 | TGTCCAAATCAGCTCTACTTATGAGA | 59.619 | 38.462 | 0.00 | 0.00 | 33.68 | 3.27 |
40 | 41 | 6.544928 | TGTCCAAATCAGCTCTACTTATGA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
44 | 45 | 8.814038 | AATTATTGTCCAAATCAGCTCTACTT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
47 | 48 | 8.677300 | GTTGAATTATTGTCCAAATCAGCTCTA | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
50 | 51 | 6.351286 | GGGTTGAATTATTGTCCAAATCAGCT | 60.351 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
51 | 52 | 5.812127 | GGGTTGAATTATTGTCCAAATCAGC | 59.188 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
53 | 54 | 5.105554 | CCGGGTTGAATTATTGTCCAAATCA | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
55 | 56 | 5.020132 | TCCGGGTTGAATTATTGTCCAAAT | 58.980 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
56 | 57 | 4.408276 | TCCGGGTTGAATTATTGTCCAAA | 58.592 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
59 | 60 | 3.129813 | GGTTCCGGGTTGAATTATTGTCC | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
62 | 63 | 2.098443 | CGGGTTCCGGGTTGAATTATTG | 59.902 | 50.000 | 0.00 | 0.00 | 44.15 | 1.90 |
66 | 67 | 4.408378 | CGGGTTCCGGGTTGAATT | 57.592 | 55.556 | 0.00 | 0.00 | 44.15 | 2.17 |
76 | 77 | 2.109126 | GCATGTGAGCTCGGGTTCC | 61.109 | 63.158 | 9.64 | 0.00 | 0.00 | 3.62 |
78 | 79 | 1.672356 | GTGCATGTGAGCTCGGGTT | 60.672 | 57.895 | 9.64 | 0.00 | 34.99 | 4.11 |
79 | 80 | 2.046892 | GTGCATGTGAGCTCGGGT | 60.047 | 61.111 | 9.64 | 0.00 | 34.99 | 5.28 |
80 | 81 | 2.821366 | GGTGCATGTGAGCTCGGG | 60.821 | 66.667 | 9.64 | 0.00 | 34.99 | 5.14 |
82 | 83 | 2.104859 | CCAGGTGCATGTGAGCTCG | 61.105 | 63.158 | 9.64 | 0.00 | 34.99 | 5.03 |
83 | 84 | 1.002868 | ACCAGGTGCATGTGAGCTC | 60.003 | 57.895 | 6.82 | 6.82 | 34.99 | 4.09 |
84 | 85 | 1.303074 | CACCAGGTGCATGTGAGCT | 60.303 | 57.895 | 6.67 | 0.00 | 34.99 | 4.09 |
85 | 86 | 0.890542 | TTCACCAGGTGCATGTGAGC | 60.891 | 55.000 | 15.64 | 0.00 | 39.89 | 4.26 |
88 | 89 | 2.715046 | ACTATTCACCAGGTGCATGTG | 58.285 | 47.619 | 15.64 | 9.66 | 32.98 | 3.21 |
91 | 92 | 8.766994 | ATTATTTTACTATTCACCAGGTGCAT | 57.233 | 30.769 | 15.64 | 12.56 | 32.98 | 3.96 |
92 | 93 | 9.688091 | TTATTATTTTACTATTCACCAGGTGCA | 57.312 | 29.630 | 15.64 | 4.10 | 32.98 | 4.57 |
130 | 131 | 8.572855 | TTCACCACAAAAAGAATTTGGATTTT | 57.427 | 26.923 | 5.96 | 0.00 | 39.02 | 1.82 |
131 | 132 | 8.572855 | TTTCACCACAAAAAGAATTTGGATTT | 57.427 | 26.923 | 5.96 | 0.00 | 39.02 | 2.17 |
132 | 133 | 8.046107 | TCTTTCACCACAAAAAGAATTTGGATT | 58.954 | 29.630 | 5.96 | 0.00 | 39.02 | 3.01 |
134 | 135 | 6.940739 | TCTTTCACCACAAAAAGAATTTGGA | 58.059 | 32.000 | 5.96 | 0.00 | 39.02 | 3.53 |
136 | 137 | 7.127686 | GCATCTTTCACCACAAAAAGAATTTG | 58.872 | 34.615 | 2.07 | 0.00 | 42.86 | 2.32 |
137 | 138 | 6.822676 | TGCATCTTTCACCACAAAAAGAATTT | 59.177 | 30.769 | 2.07 | 0.00 | 42.86 | 1.82 |
138 | 139 | 6.347696 | TGCATCTTTCACCACAAAAAGAATT | 58.652 | 32.000 | 2.07 | 0.00 | 42.86 | 2.17 |
139 | 140 | 5.916318 | TGCATCTTTCACCACAAAAAGAAT | 58.084 | 33.333 | 2.07 | 0.00 | 42.86 | 2.40 |
140 | 141 | 5.336150 | TGCATCTTTCACCACAAAAAGAA | 57.664 | 34.783 | 2.07 | 0.00 | 42.86 | 2.52 |
141 | 142 | 4.998671 | TGCATCTTTCACCACAAAAAGA | 57.001 | 36.364 | 0.53 | 0.53 | 43.52 | 2.52 |
143 | 144 | 5.163426 | ACTCATGCATCTTTCACCACAAAAA | 60.163 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
145 | 146 | 3.890756 | ACTCATGCATCTTTCACCACAAA | 59.109 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
147 | 148 | 2.815503 | CACTCATGCATCTTTCACCACA | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
149 | 150 | 2.439409 | CCACTCATGCATCTTTCACCA | 58.561 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
150 | 151 | 1.747355 | CCCACTCATGCATCTTTCACC | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
151 | 152 | 2.163010 | CACCCACTCATGCATCTTTCAC | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
152 | 153 | 2.040145 | TCACCCACTCATGCATCTTTCA | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
153 | 154 | 2.715046 | TCACCCACTCATGCATCTTTC | 58.285 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
154 | 155 | 2.885135 | TCACCCACTCATGCATCTTT | 57.115 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
158 | 159 | 2.372264 | GAACATCACCCACTCATGCAT | 58.628 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
161 | 162 | 2.274437 | CTCGAACATCACCCACTCATG | 58.726 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
165 | 166 | 1.296715 | GGCTCGAACATCACCCACT | 59.703 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
166 | 167 | 0.605319 | TTGGCTCGAACATCACCCAC | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
167 | 168 | 0.109532 | TTTGGCTCGAACATCACCCA | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
168 | 169 | 1.463674 | ATTTGGCTCGAACATCACCC | 58.536 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
169 | 170 | 3.057596 | TGAAATTTGGCTCGAACATCACC | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
170 | 171 | 4.083324 | TCTGAAATTTGGCTCGAACATCAC | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
171 | 172 | 4.071423 | TCTGAAATTTGGCTCGAACATCA | 58.929 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
175 | 176 | 2.226437 | TGCTCTGAAATTTGGCTCGAAC | 59.774 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
176 | 177 | 2.503331 | TGCTCTGAAATTTGGCTCGAA | 58.497 | 42.857 | 0.00 | 0.00 | 0.00 | 3.71 |
177 | 178 | 2.183478 | TGCTCTGAAATTTGGCTCGA | 57.817 | 45.000 | 0.00 | 0.00 | 0.00 | 4.04 |
179 | 180 | 5.346522 | CCTAAATGCTCTGAAATTTGGCTC | 58.653 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
186 | 187 | 6.534475 | TCAAATGCCTAAATGCTCTGAAAT | 57.466 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
187 | 188 | 5.622914 | GCTCAAATGCCTAAATGCTCTGAAA | 60.623 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
188 | 189 | 4.142315 | GCTCAAATGCCTAAATGCTCTGAA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
190 | 191 | 3.129813 | TGCTCAAATGCCTAAATGCTCTG | 59.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
191 | 192 | 3.359033 | TGCTCAAATGCCTAAATGCTCT | 58.641 | 40.909 | 0.00 | 0.00 | 0.00 | 4.09 |
194 | 195 | 2.159142 | AGCTGCTCAAATGCCTAAATGC | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
195 | 196 | 3.380637 | AGAGCTGCTCAAATGCCTAAATG | 59.619 | 43.478 | 29.49 | 0.00 | 32.06 | 2.32 |
196 | 197 | 3.629087 | AGAGCTGCTCAAATGCCTAAAT | 58.371 | 40.909 | 29.49 | 3.19 | 32.06 | 1.40 |
197 | 198 | 3.077484 | AGAGCTGCTCAAATGCCTAAA | 57.923 | 42.857 | 29.49 | 0.00 | 32.06 | 1.85 |
198 | 199 | 2.795231 | AGAGCTGCTCAAATGCCTAA | 57.205 | 45.000 | 29.49 | 0.00 | 32.06 | 2.69 |
199 | 200 | 2.795231 | AAGAGCTGCTCAAATGCCTA | 57.205 | 45.000 | 29.49 | 0.00 | 32.06 | 3.93 |
200 | 201 | 2.641305 | CTAAGAGCTGCTCAAATGCCT | 58.359 | 47.619 | 29.49 | 5.97 | 32.06 | 4.75 |
201 | 202 | 1.065251 | GCTAAGAGCTGCTCAAATGCC | 59.935 | 52.381 | 29.49 | 10.20 | 38.45 | 4.40 |
202 | 203 | 2.471862 | GCTAAGAGCTGCTCAAATGC | 57.528 | 50.000 | 29.49 | 22.04 | 38.45 | 3.56 |
213 | 214 | 9.943163 | CCTGATTTTATCTTTTTAGCTAAGAGC | 57.057 | 33.333 | 6.24 | 0.00 | 42.84 | 4.09 |
231 | 232 | 8.962679 | TGTTTTGTACTGTTTAGACCTGATTTT | 58.037 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
232 | 233 | 8.514330 | TGTTTTGTACTGTTTAGACCTGATTT | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
235 | 236 | 6.646267 | ACTGTTTTGTACTGTTTAGACCTGA | 58.354 | 36.000 | 0.00 | 0.00 | 35.64 | 3.86 |
236 | 237 | 6.920569 | ACTGTTTTGTACTGTTTAGACCTG | 57.079 | 37.500 | 0.00 | 0.00 | 35.64 | 4.00 |
237 | 238 | 8.886719 | GTTTACTGTTTTGTACTGTTTAGACCT | 58.113 | 33.333 | 0.00 | 0.00 | 39.36 | 3.85 |
238 | 239 | 8.886719 | AGTTTACTGTTTTGTACTGTTTAGACC | 58.113 | 33.333 | 0.00 | 0.00 | 39.36 | 3.85 |
244 | 245 | 9.968870 | TGAAAAAGTTTACTGTTTTGTACTGTT | 57.031 | 25.926 | 0.00 | 0.00 | 39.36 | 3.16 |
245 | 246 | 9.401873 | GTGAAAAAGTTTACTGTTTTGTACTGT | 57.598 | 29.630 | 0.00 | 0.00 | 41.24 | 3.55 |
246 | 247 | 9.400638 | TGTGAAAAAGTTTACTGTTTTGTACTG | 57.599 | 29.630 | 0.00 | 0.00 | 33.75 | 2.74 |
250 | 251 | 9.361315 | GGTATGTGAAAAAGTTTACTGTTTTGT | 57.639 | 29.630 | 0.00 | 0.00 | 33.75 | 2.83 |
251 | 252 | 8.813282 | GGGTATGTGAAAAAGTTTACTGTTTTG | 58.187 | 33.333 | 0.00 | 0.00 | 33.75 | 2.44 |
252 | 253 | 8.755028 | AGGGTATGTGAAAAAGTTTACTGTTTT | 58.245 | 29.630 | 0.00 | 2.26 | 33.75 | 2.43 |
254 | 255 | 7.891498 | AGGGTATGTGAAAAAGTTTACTGTT | 57.109 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
255 | 256 | 8.983702 | TTAGGGTATGTGAAAAAGTTTACTGT | 57.016 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
261 | 262 | 9.758651 | GACAAAATTAGGGTATGTGAAAAAGTT | 57.241 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
262 | 263 | 9.143155 | AGACAAAATTAGGGTATGTGAAAAAGT | 57.857 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
263 | 264 | 9.981114 | AAGACAAAATTAGGGTATGTGAAAAAG | 57.019 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
290 | 291 | 4.202398 | ACATCTGAGGAGACTTCAGCAAAA | 60.202 | 41.667 | 0.00 | 0.00 | 44.43 | 2.44 |
292 | 293 | 2.902486 | ACATCTGAGGAGACTTCAGCAA | 59.098 | 45.455 | 0.00 | 0.00 | 44.43 | 3.91 |
293 | 294 | 2.495270 | GACATCTGAGGAGACTTCAGCA | 59.505 | 50.000 | 0.00 | 0.00 | 44.43 | 4.41 |
294 | 295 | 2.159114 | GGACATCTGAGGAGACTTCAGC | 60.159 | 54.545 | 0.00 | 0.00 | 44.43 | 4.26 |
296 | 297 | 3.175438 | TGGACATCTGAGGAGACTTCA | 57.825 | 47.619 | 0.00 | 0.00 | 44.43 | 3.02 |
297 | 298 | 4.543590 | TTTGGACATCTGAGGAGACTTC | 57.456 | 45.455 | 0.00 | 0.00 | 44.43 | 3.01 |
298 | 299 | 4.288105 | ACATTTGGACATCTGAGGAGACTT | 59.712 | 41.667 | 0.00 | 0.00 | 44.43 | 3.01 |
301 | 302 | 4.533707 | AGAACATTTGGACATCTGAGGAGA | 59.466 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
303 | 304 | 4.286808 | TGAGAACATTTGGACATCTGAGGA | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
305 | 306 | 6.564709 | TTTGAGAACATTTGGACATCTGAG | 57.435 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
306 | 307 | 7.528996 | AATTTGAGAACATTTGGACATCTGA | 57.471 | 32.000 | 0.00 | 0.00 | 0.00 | 3.27 |
307 | 308 | 8.014322 | CAAATTTGAGAACATTTGGACATCTG | 57.986 | 34.615 | 13.08 | 0.00 | 32.20 | 2.90 |
317 | 318 | 4.582701 | TCGTGCCAAATTTGAGAACATT | 57.417 | 36.364 | 19.86 | 0.00 | 0.00 | 2.71 |
318 | 319 | 4.202101 | TGTTCGTGCCAAATTTGAGAACAT | 60.202 | 37.500 | 27.39 | 0.00 | 40.68 | 2.71 |
319 | 320 | 3.129462 | TGTTCGTGCCAAATTTGAGAACA | 59.871 | 39.130 | 27.39 | 27.39 | 42.47 | 3.18 |
320 | 321 | 3.701241 | TGTTCGTGCCAAATTTGAGAAC | 58.299 | 40.909 | 24.78 | 24.78 | 37.56 | 3.01 |
322 | 323 | 3.567585 | TGATGTTCGTGCCAAATTTGAGA | 59.432 | 39.130 | 19.86 | 10.01 | 0.00 | 3.27 |
323 | 324 | 3.670055 | GTGATGTTCGTGCCAAATTTGAG | 59.330 | 43.478 | 19.86 | 10.54 | 0.00 | 3.02 |
325 | 326 | 2.404693 | CGTGATGTTCGTGCCAAATTTG | 59.595 | 45.455 | 11.40 | 11.40 | 0.00 | 2.32 |
326 | 327 | 2.660490 | CGTGATGTTCGTGCCAAATTT | 58.340 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
327 | 328 | 1.665735 | GCGTGATGTTCGTGCCAAATT | 60.666 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
328 | 329 | 0.109781 | GCGTGATGTTCGTGCCAAAT | 60.110 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
329 | 330 | 1.281353 | GCGTGATGTTCGTGCCAAA | 59.719 | 52.632 | 0.00 | 0.00 | 0.00 | 3.28 |
330 | 331 | 1.233950 | ATGCGTGATGTTCGTGCCAA | 61.234 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
331 | 332 | 1.233950 | AATGCGTGATGTTCGTGCCA | 61.234 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
332 | 333 | 0.521242 | GAATGCGTGATGTTCGTGCC | 60.521 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
333 | 334 | 0.165727 | TGAATGCGTGATGTTCGTGC | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
334 | 335 | 2.592796 | TTGAATGCGTGATGTTCGTG | 57.407 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
335 | 336 | 2.741517 | TGATTGAATGCGTGATGTTCGT | 59.258 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
336 | 337 | 3.388149 | TGATTGAATGCGTGATGTTCG | 57.612 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
337 | 338 | 5.165911 | AGATGATTGAATGCGTGATGTTC | 57.834 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
338 | 339 | 5.571784 | AAGATGATTGAATGCGTGATGTT | 57.428 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
339 | 340 | 5.124297 | TGAAAGATGATTGAATGCGTGATGT | 59.876 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
341 | 342 | 5.449588 | GGTGAAAGATGATTGAATGCGTGAT | 60.450 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
344 | 345 | 3.758023 | TGGTGAAAGATGATTGAATGCGT | 59.242 | 39.130 | 0.00 | 0.00 | 0.00 | 5.24 |
345 | 346 | 4.100529 | GTGGTGAAAGATGATTGAATGCG | 58.899 | 43.478 | 0.00 | 0.00 | 0.00 | 4.73 |
346 | 347 | 5.063180 | TGTGGTGAAAGATGATTGAATGC | 57.937 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
347 | 348 | 7.949903 | TTTTGTGGTGAAAGATGATTGAATG | 57.050 | 32.000 | 0.00 | 0.00 | 0.00 | 2.67 |
405 | 406 | 5.410067 | CGGGCATGAACAGTAAAATCATTT | 58.590 | 37.500 | 0.00 | 0.00 | 31.65 | 2.32 |
406 | 407 | 4.142182 | CCGGGCATGAACAGTAAAATCATT | 60.142 | 41.667 | 0.00 | 0.00 | 31.65 | 2.57 |
407 | 408 | 3.381272 | CCGGGCATGAACAGTAAAATCAT | 59.619 | 43.478 | 0.00 | 0.00 | 34.22 | 2.45 |
409 | 410 | 2.752903 | ACCGGGCATGAACAGTAAAATC | 59.247 | 45.455 | 6.32 | 0.00 | 0.00 | 2.17 |
410 | 411 | 2.752903 | GACCGGGCATGAACAGTAAAAT | 59.247 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
411 | 412 | 2.156098 | GACCGGGCATGAACAGTAAAA | 58.844 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
415 | 416 | 0.981183 | TTAGACCGGGCATGAACAGT | 59.019 | 50.000 | 11.69 | 0.00 | 0.00 | 3.55 |
416 | 417 | 2.158900 | AGATTAGACCGGGCATGAACAG | 60.159 | 50.000 | 11.69 | 0.00 | 0.00 | 3.16 |
418 | 419 | 2.158957 | TCAGATTAGACCGGGCATGAAC | 60.159 | 50.000 | 11.69 | 0.00 | 0.00 | 3.18 |
419 | 420 | 2.103094 | CTCAGATTAGACCGGGCATGAA | 59.897 | 50.000 | 11.69 | 0.00 | 0.00 | 2.57 |
423 | 424 | 1.686325 | GGCTCAGATTAGACCGGGCA | 61.686 | 60.000 | 11.69 | 0.00 | 0.00 | 5.36 |
424 | 425 | 1.069935 | GGCTCAGATTAGACCGGGC | 59.930 | 63.158 | 6.32 | 0.52 | 0.00 | 6.13 |
425 | 426 | 1.749033 | GGGCTCAGATTAGACCGGG | 59.251 | 63.158 | 6.32 | 0.00 | 34.10 | 5.73 |
429 | 430 | 0.676736 | CTCCCGGGCTCAGATTAGAC | 59.323 | 60.000 | 18.49 | 0.00 | 0.00 | 2.59 |
430 | 431 | 1.115930 | GCTCCCGGGCTCAGATTAGA | 61.116 | 60.000 | 18.49 | 0.00 | 0.00 | 2.10 |
431 | 432 | 1.369321 | GCTCCCGGGCTCAGATTAG | 59.631 | 63.158 | 18.49 | 6.38 | 0.00 | 1.73 |
433 | 434 | 3.483869 | GGCTCCCGGGCTCAGATT | 61.484 | 66.667 | 18.49 | 0.00 | 37.53 | 2.40 |
434 | 435 | 4.804420 | TGGCTCCCGGGCTCAGAT | 62.804 | 66.667 | 18.49 | 0.00 | 41.48 | 2.90 |
438 | 439 | 2.517166 | GATTTGGCTCCCGGGCTC | 60.517 | 66.667 | 18.49 | 9.71 | 41.48 | 4.70 |
439 | 440 | 4.489771 | CGATTTGGCTCCCGGGCT | 62.490 | 66.667 | 18.49 | 0.00 | 41.48 | 5.19 |
441 | 442 | 3.995506 | AAGCGATTTGGCTCCCGGG | 62.996 | 63.158 | 16.85 | 16.85 | 43.93 | 5.73 |
443 | 444 | 0.243636 | AAAAAGCGATTTGGCTCCCG | 59.756 | 50.000 | 0.00 | 0.00 | 43.93 | 5.14 |
459 | 460 | 6.320672 | TCCGGTTGTAGTCCAAAACATAAAAA | 59.679 | 34.615 | 0.00 | 0.00 | 34.07 | 1.94 |
460 | 461 | 5.826737 | TCCGGTTGTAGTCCAAAACATAAAA | 59.173 | 36.000 | 0.00 | 0.00 | 34.07 | 1.52 |
461 | 462 | 5.374921 | TCCGGTTGTAGTCCAAAACATAAA | 58.625 | 37.500 | 0.00 | 0.00 | 34.07 | 1.40 |
462 | 463 | 4.970711 | TCCGGTTGTAGTCCAAAACATAA | 58.029 | 39.130 | 0.00 | 0.00 | 34.07 | 1.90 |
463 | 464 | 4.283978 | TCTCCGGTTGTAGTCCAAAACATA | 59.716 | 41.667 | 0.00 | 0.00 | 34.07 | 2.29 |
465 | 466 | 2.435069 | TCTCCGGTTGTAGTCCAAAACA | 59.565 | 45.455 | 0.00 | 0.00 | 34.07 | 2.83 |
466 | 467 | 2.804527 | GTCTCCGGTTGTAGTCCAAAAC | 59.195 | 50.000 | 0.00 | 0.00 | 34.07 | 2.43 |
469 | 470 | 1.616865 | CTGTCTCCGGTTGTAGTCCAA | 59.383 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
470 | 471 | 1.254026 | CTGTCTCCGGTTGTAGTCCA | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
471 | 472 | 0.108756 | GCTGTCTCCGGTTGTAGTCC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
472 | 473 | 0.601558 | TGCTGTCTCCGGTTGTAGTC | 59.398 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
475 | 476 | 0.391130 | GCATGCTGTCTCCGGTTGTA | 60.391 | 55.000 | 11.37 | 0.00 | 0.00 | 2.41 |
477 | 478 | 0.957395 | AAGCATGCTGTCTCCGGTTG | 60.957 | 55.000 | 23.48 | 0.00 | 0.00 | 3.77 |
479 | 480 | 1.078848 | GAAGCATGCTGTCTCCGGT | 60.079 | 57.895 | 23.48 | 1.63 | 0.00 | 5.28 |
487 | 488 | 0.318022 | TTTGCACACGAAGCATGCTG | 60.318 | 50.000 | 23.48 | 12.58 | 42.33 | 4.41 |
488 | 489 | 0.385029 | TTTTGCACACGAAGCATGCT | 59.615 | 45.000 | 16.30 | 16.30 | 42.33 | 3.79 |
519 | 520 | 0.322975 | TCTCCAACAAGAGCAGGAGC | 59.677 | 55.000 | 0.00 | 0.00 | 45.69 | 4.70 |
525 | 526 | 2.777832 | ATGACCTCTCCAACAAGAGC | 57.222 | 50.000 | 0.00 | 0.00 | 41.27 | 4.09 |
550 | 551 | 3.604772 | CGTTCAAGAGGAGAAAAAGTGCG | 60.605 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
553 | 554 | 5.429130 | AGTTCGTTCAAGAGGAGAAAAAGT | 58.571 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
564 | 573 | 3.125316 | CCGTTACCAAGTTCGTTCAAGA | 58.875 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
572 | 581 | 3.697982 | CCAACAAACCGTTACCAAGTTC | 58.302 | 45.455 | 0.00 | 0.00 | 35.52 | 3.01 |
578 | 587 | 0.876399 | ATCGCCAACAAACCGTTACC | 59.124 | 50.000 | 0.00 | 0.00 | 35.52 | 2.85 |
590 | 599 | 1.338960 | TGATGACAAGAGCATCGCCAA | 60.339 | 47.619 | 0.00 | 0.00 | 43.88 | 4.52 |
602 | 611 | 9.959749 | GGTAGTCTTTTAAATTTGTGATGACAA | 57.040 | 29.630 | 0.00 | 0.00 | 40.45 | 3.18 |
611 | 620 | 5.624292 | CCGGACGGTAGTCTTTTAAATTTG | 58.376 | 41.667 | 0.00 | 0.00 | 46.29 | 2.32 |
630 | 639 | 2.488204 | TGACAAATCAATGAGCCGGA | 57.512 | 45.000 | 5.05 | 0.00 | 0.00 | 5.14 |
634 | 643 | 4.679662 | CTGGGAATGACAAATCAATGAGC | 58.320 | 43.478 | 0.00 | 0.00 | 38.69 | 4.26 |
638 | 647 | 5.486735 | TTTGCTGGGAATGACAAATCAAT | 57.513 | 34.783 | 0.00 | 0.00 | 38.69 | 2.57 |
646 | 655 | 2.424956 | GGTCTCATTTGCTGGGAATGAC | 59.575 | 50.000 | 0.00 | 0.00 | 35.65 | 3.06 |
663 | 672 | 1.073897 | GAGGCAAGTTGGCAGGTCT | 59.926 | 57.895 | 28.85 | 9.90 | 46.46 | 3.85 |
673 | 685 | 1.002544 | GGCAACTGACTAGAGGCAAGT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
692 | 704 | 1.073923 | AGGTTGGCTTGTTGGAGTAGG | 59.926 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
795 | 807 | 1.067846 | TGTCTCGCACGCTTCACTATT | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
797 | 809 | 0.109735 | CTGTCTCGCACGCTTCACTA | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
807 | 819 | 2.230508 | ACGTTTATCTTCCTGTCTCGCA | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
823 | 835 | 3.553511 | TGCATTTTTCGCAAATCACGTTT | 59.446 | 34.783 | 0.00 | 0.00 | 36.17 | 3.60 |
835 | 847 | 4.035017 | ACGACTTCACTTTGCATTTTTCG | 58.965 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
842 | 854 | 1.205657 | GACGACGACTTCACTTTGCA | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
843 | 855 | 0.158928 | CGACGACGACTTCACTTTGC | 59.841 | 55.000 | 0.00 | 0.00 | 42.66 | 3.68 |
844 | 856 | 0.776451 | CCGACGACGACTTCACTTTG | 59.224 | 55.000 | 9.28 | 0.00 | 42.66 | 2.77 |
845 | 857 | 0.318445 | CCCGACGACGACTTCACTTT | 60.318 | 55.000 | 9.28 | 0.00 | 42.66 | 2.66 |
852 | 869 | 0.674581 | TACATGACCCGACGACGACT | 60.675 | 55.000 | 9.28 | 0.00 | 42.66 | 4.18 |
932 | 3540 | 5.238650 | TGGTTGCTTCTAGCTAGTTTGTTTC | 59.761 | 40.000 | 20.10 | 7.75 | 42.97 | 2.78 |
993 | 3601 | 4.344102 | AGATCCTTGCATTGCATAGCATTT | 59.656 | 37.500 | 12.95 | 0.00 | 40.94 | 2.32 |
1032 | 3648 | 1.471119 | GGGATGGGATATGCTGCATG | 58.529 | 55.000 | 24.59 | 0.00 | 0.00 | 4.06 |
1200 | 3823 | 3.013327 | TGCATCTGCCAGGCTCCT | 61.013 | 61.111 | 14.15 | 0.00 | 41.18 | 3.69 |
1290 | 3913 | 2.823924 | TGCCGTTGCAGTAGTAGAAA | 57.176 | 45.000 | 0.00 | 0.00 | 44.23 | 2.52 |
1419 | 4042 | 0.811616 | CTGCGTAGGAACCCATGAGC | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1614 | 4249 | 1.526575 | CGAAGGTGGCCAGCAACATT | 61.527 | 55.000 | 34.87 | 21.13 | 0.00 | 2.71 |
1618 | 4253 | 4.577677 | TGCGAAGGTGGCCAGCAA | 62.578 | 61.111 | 34.87 | 13.23 | 34.66 | 3.91 |
1641 | 4276 | 2.981909 | CCGGCGGCGTAGGAGATA | 60.982 | 66.667 | 30.09 | 0.00 | 0.00 | 1.98 |
1698 | 4339 | 1.379044 | AAGAAGGCGGCCATCCTTG | 60.379 | 57.895 | 25.97 | 0.00 | 43.54 | 3.61 |
2059 | 4712 | 2.146342 | CAAGTTCTGCAACCATCTCGT | 58.854 | 47.619 | 0.00 | 0.00 | 32.22 | 4.18 |
2145 | 4816 | 3.766691 | GGCACGAGGGTTAGCCGA | 61.767 | 66.667 | 0.00 | 0.00 | 37.41 | 5.54 |
2153 | 4824 | 2.403252 | ATTCTAGTTTGGCACGAGGG | 57.597 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2255 | 6069 | 3.761218 | TGAGGCTTTCAGACAGAGACTAG | 59.239 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
2321 | 6614 | 9.590451 | AGTGTAAAATATTTTTCATGCAGGATG | 57.410 | 29.630 | 18.14 | 0.00 | 32.86 | 3.51 |
2554 | 7517 | 6.854381 | GGTTTGTTATTTCTCACTAAACCGTG | 59.146 | 38.462 | 0.00 | 0.00 | 37.09 | 4.94 |
2806 | 7806 | 4.750098 | TCAACGCTCTCTTTCCTTGTTTAG | 59.250 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2854 | 7854 | 8.907222 | TTGTCATGCATGTCACATACTAATAT | 57.093 | 30.769 | 23.43 | 0.00 | 0.00 | 1.28 |
2857 | 7857 | 8.729805 | TTATTGTCATGCATGTCACATACTAA | 57.270 | 30.769 | 23.43 | 15.82 | 0.00 | 2.24 |
2867 | 7867 | 4.032310 | ACCCCATTTATTGTCATGCATGT | 58.968 | 39.130 | 25.43 | 9.58 | 0.00 | 3.21 |
2909 | 7909 | 9.363401 | ACCATACTATCTTTACAGTGCATAGTA | 57.637 | 33.333 | 0.00 | 0.00 | 37.09 | 1.82 |
2919 | 7919 | 9.670442 | AGATTCCCTTACCATACTATCTTTACA | 57.330 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2922 | 7922 | 8.652290 | GTGAGATTCCCTTACCATACTATCTTT | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3021 | 8021 | 4.335594 | GGAATGGAGTATATAAATGCCCGC | 59.664 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
3038 | 8038 | 9.842775 | ATCTATATGCACTACATTATGGAATGG | 57.157 | 33.333 | 0.00 | 0.00 | 45.83 | 3.16 |
3043 | 8043 | 9.440773 | ACACAATCTATATGCACTACATTATGG | 57.559 | 33.333 | 0.00 | 0.00 | 40.38 | 2.74 |
3209 | 8211 | 6.926313 | AGACCAAGTTTGTAGAGACAGATAC | 58.074 | 40.000 | 0.00 | 0.00 | 36.76 | 2.24 |
3213 | 8215 | 6.750148 | ACTTAGACCAAGTTTGTAGAGACAG | 58.250 | 40.000 | 0.00 | 0.00 | 45.54 | 3.51 |
3214 | 8216 | 6.726490 | ACTTAGACCAAGTTTGTAGAGACA | 57.274 | 37.500 | 0.00 | 0.00 | 45.54 | 3.41 |
3262 | 8264 | 6.646653 | CGTTCCACAATGTAGTGCATATAGAT | 59.353 | 38.462 | 0.00 | 0.00 | 36.67 | 1.98 |
3276 | 8278 | 1.533625 | ACACCATCCGTTCCACAATG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3293 | 8295 | 4.929819 | TTTCTCGGCAGTAGCATATACA | 57.070 | 40.909 | 0.00 | 0.00 | 44.61 | 2.29 |
3328 | 8330 | 7.033185 | ACACACAAGTTTGGAAAATACACTTC | 58.967 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3368 | 8370 | 4.408921 | TCTTGGATGGTCCGAATAACTCAT | 59.591 | 41.667 | 0.00 | 0.00 | 40.17 | 2.90 |
3484 | 8987 | 6.144402 | CGGAAAACTTGGAATCTTTTGACATG | 59.856 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
3637 | 9655 | 5.221126 | GCAAACATGGACTTCAAACTTCTCT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3677 | 9697 | 9.586732 | CCCCCATATCTATGATGTTTTCTAAAA | 57.413 | 33.333 | 0.00 | 0.00 | 35.75 | 1.52 |
4100 | 10142 | 1.673993 | CATGGCTGCCACCAACGTA | 60.674 | 57.895 | 25.99 | 0.00 | 44.65 | 3.57 |
4401 | 10752 | 2.815647 | CTTGCTTCGTCGCCCTCC | 60.816 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4521 | 10887 | 0.246635 | CCATGAACCTCGTCGTCCTT | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4715 | 11081 | 1.061411 | CATGAGTGCGAACATGCCG | 59.939 | 57.895 | 0.00 | 0.00 | 37.62 | 5.69 |
4766 | 11132 | 5.163550 | CGTCAACACATAGATGGAGGTCTTA | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4793 | 11159 | 2.125912 | GCCGACACTGCGATCACT | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
4802 | 11168 | 2.064581 | GGGTATGGAGGCCGACACT | 61.065 | 63.158 | 4.48 | 0.00 | 0.00 | 3.55 |
5381 | 11937 | 5.512788 | GGATGTGCGATTTTTGTTACAGATG | 59.487 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5382 | 11938 | 5.415701 | AGGATGTGCGATTTTTGTTACAGAT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5383 | 11939 | 4.759693 | AGGATGTGCGATTTTTGTTACAGA | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
5384 | 11940 | 5.046910 | AGGATGTGCGATTTTTGTTACAG | 57.953 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
5385 | 11941 | 4.083003 | GGAGGATGTGCGATTTTTGTTACA | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
5386 | 11942 | 4.412207 | GGAGGATGTGCGATTTTTGTTAC | 58.588 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
5387 | 11943 | 3.442273 | GGGAGGATGTGCGATTTTTGTTA | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
5388 | 11944 | 2.231235 | GGGAGGATGTGCGATTTTTGTT | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
5389 | 11945 | 1.818674 | GGGAGGATGTGCGATTTTTGT | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
5430 | 12001 | 2.601804 | AGCGTTTGTTGTTTGTTGGTC | 58.398 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
5431 | 12002 | 2.734276 | AGCGTTTGTTGTTTGTTGGT | 57.266 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5444 | 12016 | 2.028020 | CCAAGAGGGAGACTAAGCGTTT | 60.028 | 50.000 | 0.00 | 0.00 | 40.01 | 3.60 |
5467 | 12039 | 9.581099 | TCATGCGAATAATACACACGATATATT | 57.419 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
5473 | 12045 | 6.410243 | TTTTCATGCGAATAATACACACGA | 57.590 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
5475 | 12047 | 8.365210 | CAAGTTTTTCATGCGAATAATACACAC | 58.635 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
5500 | 12072 | 7.661027 | CACATGGTGTGGTGATAATGATATACA | 59.339 | 37.037 | 0.00 | 0.00 | 44.27 | 2.29 |
5589 | 12165 | 4.314961 | TGTTGACCTAGCAATGTACTGTG | 58.685 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
5592 | 12168 | 5.560724 | ACAATGTTGACCTAGCAATGTACT | 58.439 | 37.500 | 0.00 | 0.00 | 32.69 | 2.73 |
5593 | 12169 | 5.880054 | ACAATGTTGACCTAGCAATGTAC | 57.120 | 39.130 | 0.00 | 0.00 | 32.69 | 2.90 |
5620 | 12196 | 7.990314 | ACAACAAAAATACCTTAATTTGCCAGT | 59.010 | 29.630 | 0.00 | 0.00 | 36.48 | 4.00 |
5629 | 12205 | 4.220572 | GCGCGACAACAAAAATACCTTAA | 58.779 | 39.130 | 12.10 | 0.00 | 0.00 | 1.85 |
5637 | 12221 | 1.739338 | ATGGGGCGCGACAACAAAAA | 61.739 | 50.000 | 17.00 | 0.00 | 0.00 | 1.94 |
5645 | 12229 | 1.003223 | GTGTTTATAATGGGGCGCGAC | 60.003 | 52.381 | 12.10 | 6.99 | 0.00 | 5.19 |
5655 | 12239 | 8.860088 | GGCCCATTTTCTATCAGTGTTTATAAT | 58.140 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5661 | 12245 | 4.322057 | AGGCCCATTTTCTATCAGTGTT | 57.678 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.