AutoCloner

Multiple sequence alignment - TraesCS2D01G037900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G037900	chr2D	100.000	2984	0	0	1	2984	14022987	14020004	0.000000e+00	5511.0
1	TraesCS2D01G037900	chr2D	82.999	2888	348	84	166	2984	13964607	13961794	0.000000e+00	2481.0
2	TraesCS2D01G037900	chr2B	87.370	2312	218	32	710	2984	25477727	25475453	0.000000e+00	2584.0
3	TraesCS2D01G037900	chr2B	85.785	2033	241	27	983	2984	25442982	25444997	0.000000e+00	2109.0
4	TraesCS2D01G037900	chr2B	81.449	2043	314	46	982	2984	547940545	547942562	0.000000e+00	1613.0
5	TraesCS2D01G037900	chr2B	84.851	1043	122	17	1555	2569	25487810	25486776	0.000000e+00	1018.0
6	TraesCS2D01G037900	chr2B	88.472	746	37	17	1	715	25478636	25477909	0.000000e+00	856.0
7	TraesCS2D01G037900	chr2B	76.284	662	87	43	246	862	25442212	25442848	3.760000e-74	289.0
8	TraesCS2D01G037900	chrUn	86.394	2080	228	21	945	2984	2092762	2090698	0.000000e+00	2222.0
9	TraesCS2D01G037900	chrUn	86.720	2018	231	13	1000	2984	207757726	207755713	0.000000e+00	2207.0
10	TraesCS2D01G037900	chrUn	87.002	1608	147	21	687	2254	207766735	207765150	0.000000e+00	1755.0
11	TraesCS2D01G037900	chrUn	86.781	1460	149	21	1555	2984	2130930	2132375	0.000000e+00	1587.0
12	TraesCS2D01G037900	chrUn	87.288	1062	124	10	1928	2984	2095612	2094557	0.000000e+00	1203.0
13	TraesCS2D01G037900	chrUn	88.739	595	32	7	129	691	207767447	207766856	0.000000e+00	695.0
14	TraesCS2D01G037900	chrUn	84.557	654	80	16	982	1624	2146342	2146985	1.950000e-176	628.0
15	TraesCS2D01G037900	chrUn	87.027	555	24	15	360	868	2093345	2092793	1.540000e-162	582.0
16	TraesCS2D01G037900	chrUn	83.360	625	98	3	2364	2984	207764843	207764221	9.280000e-160	573.0
17	TraesCS2D01G037900	chr2A	85.337	2046	240	33	983	2984	16272546	16274575	0.000000e+00	2061.0
18	TraesCS2D01G037900	chr2A	76.529	605	62	43	219	777	16271789	16272359	1.060000e-64	257.0
19	TraesCS2D01G037900	chr7D	79.490	2038	331	47	1002	2983	155308759	155310765	0.000000e+00	1367.0
20	TraesCS2D01G037900	chr7A	80.904	1283	183	31	1002	2247	157169073	157170330	0.000000e+00	955.0
21	TraesCS2D01G037900	chr5B	76.245	261	46	10	1239	1494	540748298	540748049	1.120000e-24	124.0
22	TraesCS2D01G037900	chr5A	88.043	92	11	0	1241	1332	559817764	559817855	3.140000e-20	110.0
23	TraesCS2D01G037900	chr6B	92.063	63	5	0	1	63	715714314	715714376	4.100000e-14	89.8
24	TraesCS2D01G037900	chr1A	92.063	63	3	2	3	64	592068490	592068551	1.470000e-13	87.9
25	TraesCS2D01G037900	chr3D	88.889	63	7	0	1	63	26687773	26687711	8.870000e-11	78.7
26	TraesCS2D01G037900	chr1D	90.909	55	3	2	3	56	493753349	493753402	4.130000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G037900	chr2D	14020004	14022987	2983	True	5511.000000	5511	100.0000	1	2984	1	chr2D.!!$R2	2983
1	TraesCS2D01G037900	chr2D	13961794	13964607	2813	True	2481.000000	2481	82.9990	166	2984	1	chr2D.!!$R1	2818
2	TraesCS2D01G037900	chr2B	25475453	25478636	3183	True	1720.000000	2584	87.9210	1	2984	2	chr2B.!!$R2	2983
3	TraesCS2D01G037900	chr2B	547940545	547942562	2017	False	1613.000000	1613	81.4490	982	2984	1	chr2B.!!$F1	2002
4	TraesCS2D01G037900	chr2B	25442212	25444997	2785	False	1199.000000	2109	81.0345	246	2984	2	chr2B.!!$F2	2738
5	TraesCS2D01G037900	chr2B	25486776	25487810	1034	True	1018.000000	1018	84.8510	1555	2569	1	chr2B.!!$R1	1014
6	TraesCS2D01G037900	chrUn	207755713	207757726	2013	True	2207.000000	2207	86.7200	1000	2984	1	chrUn.!!$R1	1984
7	TraesCS2D01G037900	chrUn	2130930	2132375	1445	False	1587.000000	1587	86.7810	1555	2984	1	chrUn.!!$F1	1429
8	TraesCS2D01G037900	chrUn	2090698	2095612	4914	True	1335.666667	2222	86.9030	360	2984	3	chrUn.!!$R2	2624
9	TraesCS2D01G037900	chrUn	207764221	207767447	3226	True	1007.666667	1755	86.3670	129	2984	3	chrUn.!!$R3	2855
10	TraesCS2D01G037900	chrUn	2146342	2146985	643	False	628.000000	628	84.5570	982	1624	1	chrUn.!!$F2	642
11	TraesCS2D01G037900	chr2A	16271789	16274575	2786	False	1159.000000	2061	80.9330	219	2984	2	chr2A.!!$F1	2765
12	TraesCS2D01G037900	chr7D	155308759	155310765	2006	False	1367.000000	1367	79.4900	1002	2983	1	chr7D.!!$F1	1981
13	TraesCS2D01G037900	chr7A	157169073	157170330	1257	False	955.000000	955	80.9040	1002	2247	1	chr7A.!!$F1	1245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
144	147	1.202245	GCAACAGAACTCGGCAAAACA	60.202	47.619	0.0	0.0	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1994	4597	0.179029	GTTGCACAGGGTGGTGTACT	60.179	55.0	0.0	0.0	40.89	2.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	102	7.717568	AGAAAAGAAAAGAAGTTTTAGCTCCC	58.282	34.615	0.00	0.00	35.94	4.30
100	103	5.690997	AAGAAAAGAAGTTTTAGCTCCCG	57.309	39.130	0.00	0.00	35.94	5.14
102	105	4.755629	AGAAAAGAAGTTTTAGCTCCCGTC	59.244	41.667	0.00	0.00	35.94	4.79
144	147	1.202245	GCAACAGAACTCGGCAAAACA	60.202	47.619	0.00	0.00	0.00	2.83
192	199	5.365314	GTGATATCCTGGAGAAAAGAGAGGT	59.635	44.000	1.52	0.00	0.00	3.85
286	294	8.671384	AATCTACTTGCAACTACAACTTTGTA	57.329	30.769	0.00	1.97	42.35	2.41
666	2634	5.700832	ACATCGCTTGTCAACTCTATTTGAA	59.299	36.000	0.00	0.00	37.24	2.69
809	3145	8.824756	TCATAGAGACTTGTGAAACTATAGGT	57.175	34.615	4.43	0.00	38.04	3.08
813	3149	8.418597	AGAGACTTGTGAAACTATAGGTAACA	57.581	34.615	4.43	3.49	38.04	2.41
864	3276	8.780846	ATCAATGTGTTTATTGTGCATGATTT	57.219	26.923	0.00	0.00	38.77	2.17
865	3277	8.604640	TCAATGTGTTTATTGTGCATGATTTT	57.395	26.923	0.00	0.00	38.77	1.82
866	3278	8.496751	TCAATGTGTTTATTGTGCATGATTTTG	58.503	29.630	0.00	0.00	38.77	2.44
867	3279	7.966246	ATGTGTTTATTGTGCATGATTTTGT	57.034	28.000	0.00	0.00	0.00	2.83
868	3280	7.783090	TGTGTTTATTGTGCATGATTTTGTT	57.217	28.000	0.00	0.00	0.00	2.83
869	3281	7.628235	TGTGTTTATTGTGCATGATTTTGTTG	58.372	30.769	0.00	0.00	0.00	3.33
870	3282	7.070798	GTGTTTATTGTGCATGATTTTGTTGG	58.929	34.615	0.00	0.00	0.00	3.77
871	3283	6.765036	TGTTTATTGTGCATGATTTTGTTGGT	59.235	30.769	0.00	0.00	0.00	3.67
872	3284	7.281774	TGTTTATTGTGCATGATTTTGTTGGTT	59.718	29.630	0.00	0.00	0.00	3.67
873	3285	8.768955	GTTTATTGTGCATGATTTTGTTGGTTA	58.231	29.630	0.00	0.00	0.00	2.85
874	3286	8.893219	TTATTGTGCATGATTTTGTTGGTTAA	57.107	26.923	0.00	0.00	0.00	2.01
875	3287	7.982761	ATTGTGCATGATTTTGTTGGTTAAT	57.017	28.000	0.00	0.00	0.00	1.40
876	3288	6.782298	TGTGCATGATTTTGTTGGTTAATG	57.218	33.333	0.00	0.00	0.00	1.90
877	3289	6.286758	TGTGCATGATTTTGTTGGTTAATGT	58.713	32.000	0.00	0.00	0.00	2.71
878	3290	7.436933	TGTGCATGATTTTGTTGGTTAATGTA	58.563	30.769	0.00	0.00	0.00	2.29
879	3291	7.383572	TGTGCATGATTTTGTTGGTTAATGTAC	59.616	33.333	0.00	0.00	32.29	2.90
880	3292	7.598493	GTGCATGATTTTGTTGGTTAATGTACT	59.402	33.333	0.00	0.00	0.00	2.73
881	3293	8.147058	TGCATGATTTTGTTGGTTAATGTACTT	58.853	29.630	0.00	0.00	0.00	2.24
901	3313	8.097662	TGTACTTTTGTGGATTCTTTTGGTTTT	58.902	29.630	0.00	0.00	0.00	2.43
965	3436	6.001460	TCGTATCCAAAGTTCTGAACCAAAT	58.999	36.000	16.48	6.78	0.00	2.32
1056	3573	0.249784	CGATGCAGATCCTGGTCCTG	60.250	60.000	11.73	11.73	31.21	3.86
1086	3603	1.153667	GCTCCAGCTCGTCCTCTTG	60.154	63.158	0.00	0.00	38.21	3.02
1167	3690	2.362369	CCTCATGGCCGACTCCACT	61.362	63.158	0.00	0.00	39.25	4.00
1200	3723	1.667830	CGGCCACATGTCGTTCAGT	60.668	57.895	2.24	0.00	0.00	3.41
1418	3964	1.671379	GCGGTCCAAACAGGGAGTC	60.671	63.158	0.00	0.00	37.71	3.36
1450	3996	0.250234	CTCCTTCCTGATGTTCGCCA	59.750	55.000	0.00	0.00	0.00	5.69
1455	4001	1.496060	TCCTGATGTTCGCCATAGGT	58.504	50.000	0.00	0.00	32.56	3.08
1488	4034	4.803426	GAGAGGACGTGGGCGCTG	62.803	72.222	7.64	0.00	42.83	5.18
1527	4073	1.598962	CATCGGCGCCTCCATCAAT	60.599	57.895	26.68	3.35	34.01	2.57
1570	4119	1.056660	TTTCCACCCTCAGGACAGAC	58.943	55.000	0.00	0.00	34.19	3.51
1577	4126	1.214062	CTCAGGACAGACTCACGGC	59.786	63.158	0.00	0.00	0.00	5.68
1671	4229	1.198094	TTGAGGCGGACTCCATGGAA	61.198	55.000	17.00	0.00	46.01	3.53
1672	4230	1.153349	GAGGCGGACTCCATGGAAC	60.153	63.158	17.00	12.55	40.49	3.62
1691	4267	3.045601	ACTACTAGACGTGTACACCGT	57.954	47.619	20.11	19.39	42.06	4.83
1700	4288	1.137513	GTGTACACCGTCAAGCTGAC	58.862	55.000	15.42	0.00	43.65	3.51
1771	4359	0.737715	CGACCTGCTCTACACCAAGC	60.738	60.000	0.00	0.00	39.02	4.01
1775	4363	2.125106	GCTCTACACCAAGCCGGG	60.125	66.667	2.18	0.00	40.22	5.73
1808	4396	3.077556	CTGCGGCTACCTGGTCCT	61.078	66.667	0.63	0.00	0.00	3.85
1809	4397	1.756950	CTGCGGCTACCTGGTCCTA	60.757	63.158	0.63	0.00	0.00	2.94
1982	4585	3.774528	CCTCAGCGCCACCAGCTA	61.775	66.667	2.29	0.00	44.06	3.32
2014	4617	1.149627	TACACCACCCTGTGCAACC	59.850	57.895	0.00	0.00	39.93	3.77
2067	4670	4.391830	GTGTGGCTTCACGATCTTATCAAA	59.608	41.667	0.00	0.00	44.00	2.69
2068	4671	4.631377	TGTGGCTTCACGATCTTATCAAAG	59.369	41.667	0.00	0.00	44.00	2.77
2101	4731	4.497674	GCGGTGATAGTAGGTACAAGTCAG	60.498	50.000	0.00	0.00	0.00	3.51
2343	4980	1.000521	CTCTGCCATGCTGGGGAAA	60.001	57.895	4.65	0.00	38.19	3.13
2374	5233	1.077086	TACCCACTAGACCACCGCA	59.923	57.895	0.00	0.00	0.00	5.69
2419	5285	0.321996	GTCCCTTGGCTTCGAGTTCT	59.678	55.000	0.00	0.00	0.00	3.01
2431	5297	1.676529	TCGAGTTCTAGGAAGGCATCG	59.323	52.381	0.00	0.00	0.00	3.84
2432	5298	1.269309	CGAGTTCTAGGAAGGCATCGG	60.269	57.143	0.00	0.00	0.00	4.18
2662	5531	1.077663	TCCTAGGTACCCAAACCGTCT	59.922	52.381	8.74	0.00	44.77	4.18
2664	5533	2.692041	CCTAGGTACCCAAACCGTCTAG	59.308	54.545	8.74	0.05	44.77	2.43
2708	5583	2.347114	CGTGATGCCCCACACTCA	59.653	61.111	6.42	0.00	36.89	3.41
2756	5632	1.268352	GCCTCGCCAACAAATTGTACA	59.732	47.619	0.00	0.00	33.60	2.90
2762	5638	3.364621	CGCCAACAAATTGTACAATGAGC	59.635	43.478	21.46	15.43	33.60	4.26
2767	5643	6.814644	CCAACAAATTGTACAATGAGCATGAT	59.185	34.615	21.46	8.25	33.60	2.45
2851	5731	2.756907	CTGGAGAAGGAGAAGGATGGA	58.243	52.381	0.00	0.00	0.00	3.41
2861	5741	0.245539	GAAGGATGGAACGACCGACA	59.754	55.000	0.00	0.00	42.61	4.35
2908	5788	1.170442	TGGACATTCTCGTCTACGCA	58.830	50.000	0.00	0.00	39.60	5.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	8.557592	TCTATTCATTATCAATCATGGCAGTC	57.442	34.615	0.00	0.00	0.00	3.51
99	102	2.798148	AAGCTTTACCGCCTGGGACG	62.798	60.000	0.00	0.00	40.75	4.79
100	103	1.002502	AAGCTTTACCGCCTGGGAC	60.003	57.895	0.00	0.00	40.75	4.46
102	105	1.002624	TGAAGCTTTACCGCCTGGG	60.003	57.895	0.00	0.00	40.75	4.45
144	147	6.541641	ACTTATAGAACGAGAAGTGGACGTAT	59.458	38.462	0.00	0.00	39.31	3.06
192	199	2.036862	CCTGCTAGAGCTGCATATCACA	59.963	50.000	1.02	0.00	42.66	3.58
380	2291	2.675317	CGAACTTAGTGCTAAGCTGGCT	60.675	50.000	16.36	0.00	44.74	4.75
666	2634	4.679662	ACTTATGTAACTAATGCTCGCGT	58.320	39.130	5.77	0.00	0.00	6.01
722	3024	9.330063	CCAGAGTATACATGTGAATTTGTACAT	57.670	33.333	9.11	0.00	37.99	2.29
727	3029	8.442632	ACATCCAGAGTATACATGTGAATTTG	57.557	34.615	9.11	1.32	0.00	2.32
809	3145	8.956426	GTCCATGGATTTGTTAATTCTCTGTTA	58.044	33.333	19.62	0.00	0.00	2.41
813	3149	8.421249	TTTGTCCATGGATTTGTTAATTCTCT	57.579	30.769	19.62	0.00	0.00	3.10
864	3276	7.406031	TCCACAAAAGTACATTAACCAACAA	57.594	32.000	0.00	0.00	0.00	2.83
865	3277	7.589958	ATCCACAAAAGTACATTAACCAACA	57.410	32.000	0.00	0.00	0.00	3.33
866	3278	8.357402	AGAATCCACAAAAGTACATTAACCAAC	58.643	33.333	0.00	0.00	0.00	3.77
867	3279	8.472007	AGAATCCACAAAAGTACATTAACCAA	57.528	30.769	0.00	0.00	0.00	3.67
868	3280	8.472007	AAGAATCCACAAAAGTACATTAACCA	57.528	30.769	0.00	0.00	0.00	3.67
869	3281	9.758651	AAAAGAATCCACAAAAGTACATTAACC	57.241	29.630	0.00	0.00	0.00	2.85
871	3283	9.757227	CCAAAAGAATCCACAAAAGTACATTAA	57.243	29.630	0.00	0.00	0.00	1.40
872	3284	8.919145	ACCAAAAGAATCCACAAAAGTACATTA	58.081	29.630	0.00	0.00	0.00	1.90
873	3285	7.791029	ACCAAAAGAATCCACAAAAGTACATT	58.209	30.769	0.00	0.00	0.00	2.71
874	3286	7.360113	ACCAAAAGAATCCACAAAAGTACAT	57.640	32.000	0.00	0.00	0.00	2.29
875	3287	6.783708	ACCAAAAGAATCCACAAAAGTACA	57.216	33.333	0.00	0.00	0.00	2.90
876	3288	8.487313	AAAACCAAAAGAATCCACAAAAGTAC	57.513	30.769	0.00	0.00	0.00	2.73
878	3290	7.994425	AAAAACCAAAAGAATCCACAAAAGT	57.006	28.000	0.00	0.00	0.00	2.66
905	3317	8.047911	CCCTTCGGATATATACAGTCTCTTAGA	58.952	40.741	0.00	0.00	0.00	2.10
910	3322	5.262804	ACCCCTTCGGATATATACAGTCTC	58.737	45.833	0.00	0.00	34.64	3.36
911	3323	5.272405	ACCCCTTCGGATATATACAGTCT	57.728	43.478	0.00	0.00	34.64	3.24
912	3324	5.593502	CCTACCCCTTCGGATATATACAGTC	59.406	48.000	0.00	0.00	34.64	3.51
913	3325	5.254737	TCCTACCCCTTCGGATATATACAGT	59.745	44.000	0.00	0.00	34.64	3.55
914	3326	5.593502	GTCCTACCCCTTCGGATATATACAG	59.406	48.000	0.00	0.00	34.64	2.74
917	3329	7.473937	CGATAGTCCTACCCCTTCGGATATATA	60.474	44.444	0.00	0.00	34.64	0.86
918	3330	4.969136	AGTCCTACCCCTTCGGATATAT	57.031	45.455	0.00	0.00	34.64	0.86
919	3331	5.397221	CGATAGTCCTACCCCTTCGGATATA	60.397	48.000	0.00	0.00	34.64	0.86
920	3332	4.628227	CGATAGTCCTACCCCTTCGGATAT	60.628	50.000	0.00	0.00	34.64	1.63
921	3333	3.307975	CGATAGTCCTACCCCTTCGGATA	60.308	52.174	0.00	0.00	34.64	2.59
922	3334	2.554785	CGATAGTCCTACCCCTTCGGAT	60.555	54.545	0.00	0.00	34.64	4.18
923	3335	1.202855	CGATAGTCCTACCCCTTCGGA	60.203	57.143	0.00	0.00	34.64	4.55
924	3336	1.245732	CGATAGTCCTACCCCTTCGG	58.754	60.000	0.00	0.00	37.81	4.30
938	3350	6.338146	TGGTTCAGAACTTTGGATACGATAG	58.662	40.000	13.13	0.00	42.51	2.08
939	3351	6.288941	TGGTTCAGAACTTTGGATACGATA	57.711	37.500	13.13	0.00	42.51	2.92
940	3352	5.160607	TGGTTCAGAACTTTGGATACGAT	57.839	39.130	13.13	0.00	42.51	3.73
965	3436	3.263170	TCTCCTGGATGATTTTTCACGGA	59.737	43.478	0.00	0.00	0.00	4.69
1404	3950	1.671742	GAGCGACTCCCTGTTTGGA	59.328	57.895	0.00	0.00	38.35	3.53
1406	3952	4.285851	GGAGCGACTCCCTGTTTG	57.714	61.111	13.12	0.00	44.36	2.93
1488	4034	1.673665	CTCCAGGGTGCTGCACTTC	60.674	63.158	29.54	21.61	34.40	3.01
1570	4119	2.182030	GAACTCCTCCGCCGTGAG	59.818	66.667	0.00	0.00	0.00	3.51
1658	4216	3.315749	GTCTAGTAGTTCCATGGAGTCCG	59.684	52.174	15.53	1.68	0.00	4.79
1671	4229	3.045601	ACGGTGTACACGTCTAGTAGT	57.954	47.619	19.41	6.56	41.25	2.73
1691	4267	0.880278	GACGCCTTGTGTCAGCTTGA	60.880	55.000	3.07	0.00	41.96	3.02
1700	4288	2.356313	ACAGCTCGACGCCTTGTG	60.356	61.111	3.66	0.00	40.39	3.33
1775	4363	1.961277	CAGAAGGTGTGGACCACGC	60.961	63.158	26.94	26.94	45.98	5.34
1808	4396	0.749454	GGTAAGGGGCGAGACGACTA	60.749	60.000	0.00	0.00	34.07	2.59
1809	4397	2.050934	GGTAAGGGGCGAGACGACT	61.051	63.158	0.00	0.00	34.07	4.18
1994	4597	0.179029	GTTGCACAGGGTGGTGTACT	60.179	55.000	0.00	0.00	40.89	2.73
2014	4617	1.440893	CGAGCCTGTCCCATCTCTG	59.559	63.158	0.00	0.00	0.00	3.35
2062	4665	2.685999	GCCAGCCCCTCCTTTGAT	59.314	61.111	0.00	0.00	0.00	2.57
2374	5233	2.047560	GACGCCGTGGTAAAGCCT	60.048	61.111	0.00	0.00	38.35	4.58
2419	5285	0.394192	CAGATGCCGATGCCTTCCTA	59.606	55.000	0.00	0.00	36.33	2.94
2526	5392	5.420421	CAGGAGGAACATCATATAGTCGGAT	59.580	44.000	0.00	0.00	0.00	4.18
2606	5472	1.315981	TGACTAGCCTCTCGCAGGTG	61.316	60.000	2.55	0.00	45.61	4.00
2621	5487	3.909662	GCGGATTGCATGGTGACT	58.090	55.556	0.00	0.00	45.45	3.41
2662	5531	2.950781	AGAGATCCATGAAGACGCCTA	58.049	47.619	0.00	0.00	0.00	3.93
2664	5533	2.478831	GAAGAGATCCATGAAGACGCC	58.521	52.381	0.00	0.00	0.00	5.68
2708	5583	2.832129	TCTCCACGACCTAGAAATGCTT	59.168	45.455	0.00	0.00	0.00	3.91
2756	5632	4.232188	ACTCCTTGTCATCATGCTCATT	57.768	40.909	0.00	0.00	0.00	2.57
2762	5638	2.681848	GGCTGAACTCCTTGTCATCATG	59.318	50.000	0.00	0.00	0.00	3.07
2767	5643	0.108585	GGTGGCTGAACTCCTTGTCA	59.891	55.000	0.00	0.00	0.00	3.58
2861	5741	1.528309	CAAGGACAAGCCCCAACGT	60.528	57.895	0.00	0.00	37.37	3.99

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.