Multiple sequence alignment - TraesCS2D01G037100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G037100 chr2D 100.000 3779 0 0 1 3779 13836103 13832325 0.000000e+00 6979.0
1 TraesCS2D01G037100 chr2A 92.400 1829 132 2 1052 2874 16017902 16016075 0.000000e+00 2601.0
2 TraesCS2D01G037100 chr2A 90.931 827 58 9 2876 3689 16015854 16015032 0.000000e+00 1096.0
3 TraesCS2D01G037100 chr2A 80.288 208 24 6 28 226 100544567 100544766 1.420000e-29 141.0
4 TraesCS2D01G037100 chr7D 79.389 1703 313 26 1053 2733 193935063 193936749 0.000000e+00 1166.0
5 TraesCS2D01G037100 chr7D 78.538 1710 310 41 1049 2733 531977408 531975731 0.000000e+00 1072.0
6 TraesCS2D01G037100 chr7D 78.538 1067 209 17 1676 2732 399834015 399835071 0.000000e+00 684.0
7 TraesCS2D01G037100 chr7D 78.904 365 54 16 2847 3199 419038426 419038073 3.800000e-55 226.0
8 TraesCS2D01G037100 chr7A 79.308 1706 309 31 1053 2733 203525571 203527257 0.000000e+00 1155.0
9 TraesCS2D01G037100 chr7A 78.565 1073 202 24 1676 2734 457684133 457685191 0.000000e+00 682.0
10 TraesCS2D01G037100 chr7A 80.918 414 67 11 268 676 64533483 64533889 2.190000e-82 316.0
11 TraesCS2D01G037100 chr7A 88.302 265 28 3 2 266 98944437 98944698 7.880000e-82 315.0
12 TraesCS2D01G037100 chr7A 88.302 265 28 3 2 266 657892846 657893107 7.880000e-82 315.0
13 TraesCS2D01G037100 chr7A 84.706 85 8 3 3207 3286 616994341 616994257 3.130000e-11 80.5
14 TraesCS2D01G037100 chr7B 79.270 1698 312 31 1059 2733 157687841 157689521 0.000000e+00 1149.0
15 TraesCS2D01G037100 chr7B 77.882 1709 321 36 1049 2733 572507607 572505932 0.000000e+00 1009.0
16 TraesCS2D01G037100 chr7B 78.108 1078 198 33 1676 2734 409220907 409221965 0.000000e+00 649.0
17 TraesCS2D01G037100 chr1A 77.876 1704 351 21 1044 2737 443870112 443871799 0.000000e+00 1035.0
18 TraesCS2D01G037100 chr1B 76.729 1706 348 32 1044 2737 466288728 466287060 0.000000e+00 905.0
19 TraesCS2D01G037100 chr1B 86.029 272 24 9 1 266 646196399 646196662 2.870000e-71 279.0
20 TraesCS2D01G037100 chr2B 93.860 456 27 1 2419 2874 25118107 25117653 0.000000e+00 686.0
21 TraesCS2D01G037100 chr2B 90.204 490 28 4 3083 3569 25078688 25078216 4.150000e-174 621.0
22 TraesCS2D01G037100 chr2B 90.041 492 22 7 831 1321 25161643 25161178 2.500000e-171 612.0
23 TraesCS2D01G037100 chr2B 93.559 295 15 4 1 294 25162582 25162291 1.610000e-118 436.0
24 TraesCS2D01G037100 chr2B 92.537 268 19 1 1726 1993 25118372 25118106 2.130000e-102 383.0
25 TraesCS2D01G037100 chr2B 80.835 407 67 9 268 665 733080264 733080668 3.670000e-80 309.0
26 TraesCS2D01G037100 chr2B 91.304 207 16 1 2874 3080 25079241 25079037 7.990000e-72 281.0
27 TraesCS2D01G037100 chr2B 93.529 170 10 1 613 781 25162290 25162121 6.270000e-63 252.0
28 TraesCS2D01G037100 chr2B 98.387 62 1 0 780 841 25162028 25161967 3.990000e-20 110.0
29 TraesCS2D01G037100 chr4B 77.591 1071 214 24 1676 2733 671750996 671752053 3.200000e-175 625.0
30 TraesCS2D01G037100 chr4B 81.707 410 59 14 268 665 381318176 381318581 1.010000e-85 327.0
31 TraesCS2D01G037100 chr5A 82.879 660 107 4 1029 1684 697281950 697282607 4.200000e-164 588.0
32 TraesCS2D01G037100 chr5A 76.421 1073 224 27 1674 2733 697200392 697201448 1.530000e-153 553.0
33 TraesCS2D01G037100 chr1D 90.458 262 22 3 5 266 480965187 480964929 3.610000e-90 342.0
34 TraesCS2D01G037100 chr1D 88.827 179 17 2 5 181 94042182 94042359 2.290000e-52 217.0
35 TraesCS2D01G037100 chr3A 81.572 407 65 9 268 665 53029602 53029197 1.010000e-85 327.0
36 TraesCS2D01G037100 chr5B 81.188 404 69 6 268 665 672270282 672269880 6.090000e-83 318.0
37 TraesCS2D01G037100 chr3D 80.676 414 68 11 268 676 296601446 296601852 1.020000e-80 311.0
38 TraesCS2D01G037100 chr3D 80.846 402 68 9 268 665 20370260 20370656 1.320000e-79 307.0
39 TraesCS2D01G037100 chr6D 80.882 408 65 11 268 665 37429299 37428895 3.670000e-80 309.0
40 TraesCS2D01G037100 chr5D 80.238 420 71 9 268 679 267658489 267658904 4.740000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G037100 chr2D 13832325 13836103 3778 True 6979.0 6979 100.0000 1 3779 1 chr2D.!!$R1 3778
1 TraesCS2D01G037100 chr2A 16015032 16017902 2870 True 1848.5 2601 91.6655 1052 3689 2 chr2A.!!$R1 2637
2 TraesCS2D01G037100 chr7D 193935063 193936749 1686 False 1166.0 1166 79.3890 1053 2733 1 chr7D.!!$F1 1680
3 TraesCS2D01G037100 chr7D 531975731 531977408 1677 True 1072.0 1072 78.5380 1049 2733 1 chr7D.!!$R2 1684
4 TraesCS2D01G037100 chr7D 399834015 399835071 1056 False 684.0 684 78.5380 1676 2732 1 chr7D.!!$F2 1056
5 TraesCS2D01G037100 chr7A 203525571 203527257 1686 False 1155.0 1155 79.3080 1053 2733 1 chr7A.!!$F3 1680
6 TraesCS2D01G037100 chr7A 457684133 457685191 1058 False 682.0 682 78.5650 1676 2734 1 chr7A.!!$F4 1058
7 TraesCS2D01G037100 chr7B 157687841 157689521 1680 False 1149.0 1149 79.2700 1059 2733 1 chr7B.!!$F1 1674
8 TraesCS2D01G037100 chr7B 572505932 572507607 1675 True 1009.0 1009 77.8820 1049 2733 1 chr7B.!!$R1 1684
9 TraesCS2D01G037100 chr7B 409220907 409221965 1058 False 649.0 649 78.1080 1676 2734 1 chr7B.!!$F2 1058
10 TraesCS2D01G037100 chr1A 443870112 443871799 1687 False 1035.0 1035 77.8760 1044 2737 1 chr1A.!!$F1 1693
11 TraesCS2D01G037100 chr1B 466287060 466288728 1668 True 905.0 905 76.7290 1044 2737 1 chr1B.!!$R1 1693
12 TraesCS2D01G037100 chr2B 25117653 25118372 719 True 534.5 686 93.1985 1726 2874 2 chr2B.!!$R2 1148
13 TraesCS2D01G037100 chr2B 25078216 25079241 1025 True 451.0 621 90.7540 2874 3569 2 chr2B.!!$R1 695
14 TraesCS2D01G037100 chr2B 25161178 25162582 1404 True 352.5 612 93.8790 1 1321 4 chr2B.!!$R3 1320
15 TraesCS2D01G037100 chr4B 671750996 671752053 1057 False 625.0 625 77.5910 1676 2733 1 chr4B.!!$F2 1057
16 TraesCS2D01G037100 chr5A 697281950 697282607 657 False 588.0 588 82.8790 1029 1684 1 chr5A.!!$F2 655
17 TraesCS2D01G037100 chr5A 697200392 697201448 1056 False 553.0 553 76.4210 1674 2733 1 chr5A.!!$F1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 184 0.036164 TTTGATGGTGCGGTGCTACT 59.964 50.0 0.0 0.0 0.00 2.57 F
519 521 0.037303 TGTCGGTTCTACGGGACTCT 59.963 55.0 0.0 0.0 0.00 3.24 F
1333 1780 0.034767 CACCATCATCAGCACCCTGT 60.035 55.0 0.0 0.0 40.09 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1780 0.607217 CTGACCATGCTGTTGAGCCA 60.607 55.0 0.00 0.00 45.57 4.75 R
2355 2826 0.659957 CGGTGTAGCTCCGGTAGTAC 59.340 60.0 0.00 2.04 43.68 2.73 R
3001 3694 1.009829 CATGAGCTCCACCGCTTAAC 58.990 55.0 12.15 0.00 41.08 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 8.776376 AAATTTGTGCTACATCCCAATTTTAG 57.224 30.769 0.00 0.00 26.81 1.85
115 117 7.983307 AGATTTGTGTTGCATCTCTCTAATTC 58.017 34.615 0.00 0.00 0.00 2.17
117 119 9.102757 GATTTGTGTTGCATCTCTCTAATTCTA 57.897 33.333 0.00 0.00 0.00 2.10
160 162 7.092716 AGTGAATGATGCATTTTAACAACTCC 58.907 34.615 0.00 0.00 33.90 3.85
161 163 6.033831 GTGAATGATGCATTTTAACAACTCCG 59.966 38.462 0.00 0.00 33.90 4.63
168 170 6.686630 TGCATTTTAACAACTCCGATTTGAT 58.313 32.000 5.54 0.00 0.00 2.57
172 174 5.621197 TTAACAACTCCGATTTGATGGTG 57.379 39.130 5.54 0.00 0.00 4.17
173 175 1.812571 ACAACTCCGATTTGATGGTGC 59.187 47.619 5.54 0.00 0.00 5.01
175 177 0.744414 ACTCCGATTTGATGGTGCGG 60.744 55.000 0.00 0.00 43.11 5.69
182 184 0.036164 TTTGATGGTGCGGTGCTACT 59.964 50.000 0.00 0.00 0.00 2.57
195 197 3.586892 GGTGCTACTGTTCTAGGTGTTC 58.413 50.000 0.00 0.00 0.00 3.18
196 198 3.258622 GGTGCTACTGTTCTAGGTGTTCT 59.741 47.826 0.00 0.00 0.00 3.01
197 199 4.487019 GTGCTACTGTTCTAGGTGTTCTC 58.513 47.826 0.00 0.00 0.00 2.87
221 223 9.831737 CTCTGGTACTCTAATTTGAACATTTTG 57.168 33.333 0.00 0.00 0.00 2.44
228 230 9.313118 ACTCTAATTTGAACATTTTGTTTCACC 57.687 29.630 0.00 0.00 41.28 4.02
252 254 6.015010 CCGATTAGTATTCAGGAGGATCAAGT 60.015 42.308 0.00 0.00 36.25 3.16
254 256 8.577296 CGATTAGTATTCAGGAGGATCAAGTTA 58.423 37.037 0.00 0.00 36.25 2.24
277 279 3.525800 AGGTTGAGGTTTTGGCTATGT 57.474 42.857 0.00 0.00 0.00 2.29
294 296 9.995003 TTGGCTATGTAGAAATGATTTGTTTTT 57.005 25.926 0.00 0.00 0.00 1.94
314 316 7.961325 TTTTTAATGGCAAAAACTCATCTCC 57.039 32.000 0.00 0.00 33.57 3.71
315 317 6.916360 TTTAATGGCAAAAACTCATCTCCT 57.084 33.333 0.00 0.00 0.00 3.69
316 318 8.415950 TTTTAATGGCAAAAACTCATCTCCTA 57.584 30.769 0.00 0.00 0.00 2.94
317 319 8.593945 TTTAATGGCAAAAACTCATCTCCTAT 57.406 30.769 0.00 0.00 0.00 2.57
318 320 9.693739 TTTAATGGCAAAAACTCATCTCCTATA 57.306 29.630 0.00 0.00 0.00 1.31
319 321 7.573968 AATGGCAAAAACTCATCTCCTATAC 57.426 36.000 0.00 0.00 0.00 1.47
320 322 6.061022 TGGCAAAAACTCATCTCCTATACA 57.939 37.500 0.00 0.00 0.00 2.29
321 323 6.115446 TGGCAAAAACTCATCTCCTATACAG 58.885 40.000 0.00 0.00 0.00 2.74
322 324 5.008118 GGCAAAAACTCATCTCCTATACAGC 59.992 44.000 0.00 0.00 0.00 4.40
323 325 5.819901 GCAAAAACTCATCTCCTATACAGCT 59.180 40.000 0.00 0.00 0.00 4.24
324 326 6.317391 GCAAAAACTCATCTCCTATACAGCTT 59.683 38.462 0.00 0.00 0.00 3.74
325 327 7.495934 GCAAAAACTCATCTCCTATACAGCTTA 59.504 37.037 0.00 0.00 0.00 3.09
326 328 9.553064 CAAAAACTCATCTCCTATACAGCTTAT 57.447 33.333 0.00 0.00 0.00 1.73
330 332 9.771534 AACTCATCTCCTATACAGCTTATTTTC 57.228 33.333 0.00 0.00 0.00 2.29
331 333 8.371699 ACTCATCTCCTATACAGCTTATTTTCC 58.628 37.037 0.00 0.00 0.00 3.13
332 334 7.378966 TCATCTCCTATACAGCTTATTTTCCG 58.621 38.462 0.00 0.00 0.00 4.30
333 335 6.726490 TCTCCTATACAGCTTATTTTCCGT 57.274 37.500 0.00 0.00 0.00 4.69
334 336 7.120923 TCTCCTATACAGCTTATTTTCCGTT 57.879 36.000 0.00 0.00 0.00 4.44
335 337 6.984474 TCTCCTATACAGCTTATTTTCCGTTG 59.016 38.462 0.00 0.00 0.00 4.10
336 338 6.646267 TCCTATACAGCTTATTTTCCGTTGT 58.354 36.000 0.00 0.00 0.00 3.32
337 339 7.784037 TCCTATACAGCTTATTTTCCGTTGTA 58.216 34.615 0.00 0.00 0.00 2.41
338 340 7.707893 TCCTATACAGCTTATTTTCCGTTGTAC 59.292 37.037 0.00 0.00 29.40 2.90
339 341 4.657075 ACAGCTTATTTTCCGTTGTACG 57.343 40.909 0.00 0.00 42.11 3.67
340 342 3.120442 ACAGCTTATTTTCCGTTGTACGC 60.120 43.478 0.00 0.00 40.91 4.42
341 343 3.068560 AGCTTATTTTCCGTTGTACGCA 58.931 40.909 0.00 0.00 40.91 5.24
342 344 3.120442 AGCTTATTTTCCGTTGTACGCAC 60.120 43.478 0.00 0.00 40.91 5.34
343 345 3.120442 GCTTATTTTCCGTTGTACGCACT 60.120 43.478 0.00 0.00 40.91 4.40
344 346 4.634991 CTTATTTTCCGTTGTACGCACTC 58.365 43.478 0.00 0.00 40.91 3.51
345 347 0.854062 TTTTCCGTTGTACGCACTCG 59.146 50.000 0.00 0.00 40.91 4.18
346 348 1.550659 TTTCCGTTGTACGCACTCGC 61.551 55.000 0.00 0.00 40.91 5.03
347 349 2.410638 TTCCGTTGTACGCACTCGCT 62.411 55.000 0.00 0.00 40.91 4.93
348 350 2.019951 CCGTTGTACGCACTCGCTT 61.020 57.895 0.00 0.00 40.91 4.68
349 351 1.411089 CGTTGTACGCACTCGCTTC 59.589 57.895 0.00 0.00 39.84 3.86
350 352 1.411089 GTTGTACGCACTCGCTTCG 59.589 57.895 0.00 0.00 39.84 3.79
351 353 1.008194 TTGTACGCACTCGCTTCGT 60.008 52.632 0.00 0.00 39.84 3.85
352 354 0.238025 TTGTACGCACTCGCTTCGTA 59.762 50.000 0.00 0.00 39.84 3.43
353 355 0.448990 TGTACGCACTCGCTTCGTAT 59.551 50.000 0.00 0.00 40.21 3.06
354 356 0.838229 GTACGCACTCGCTTCGTATG 59.162 55.000 0.00 0.00 40.21 2.39
355 357 0.448990 TACGCACTCGCTTCGTATGT 59.551 50.000 0.00 0.00 39.84 2.29
356 358 1.071019 ACGCACTCGCTTCGTATGTG 61.071 55.000 0.00 0.00 39.84 3.21
357 359 1.742900 CGCACTCGCTTCGTATGTGG 61.743 60.000 0.00 0.00 35.30 4.17
358 360 0.736325 GCACTCGCTTCGTATGTGGT 60.736 55.000 0.00 0.00 34.30 4.16
359 361 1.468565 GCACTCGCTTCGTATGTGGTA 60.469 52.381 0.00 0.00 34.30 3.25
360 362 2.798499 GCACTCGCTTCGTATGTGGTAT 60.798 50.000 0.00 0.00 34.30 2.73
361 363 3.549423 GCACTCGCTTCGTATGTGGTATA 60.549 47.826 0.00 0.00 34.30 1.47
362 364 3.973135 CACTCGCTTCGTATGTGGTATAC 59.027 47.826 0.00 0.00 0.00 1.47
363 365 3.223953 CTCGCTTCGTATGTGGTATACG 58.776 50.000 11.93 11.93 46.06 3.06
364 366 1.712350 CGCTTCGTATGTGGTATACGC 59.288 52.381 13.01 1.39 44.81 4.42
365 367 2.603892 CGCTTCGTATGTGGTATACGCT 60.604 50.000 13.01 0.00 44.81 5.07
366 368 3.364267 CGCTTCGTATGTGGTATACGCTA 60.364 47.826 13.01 4.88 44.81 4.26
367 369 3.910767 GCTTCGTATGTGGTATACGCTAC 59.089 47.826 13.01 0.00 44.81 3.58
368 370 4.555313 GCTTCGTATGTGGTATACGCTACA 60.555 45.833 13.01 8.17 44.81 2.74
369 371 4.472691 TCGTATGTGGTATACGCTACAC 57.527 45.455 13.01 5.91 44.81 2.90
370 372 3.250762 TCGTATGTGGTATACGCTACACC 59.749 47.826 13.01 0.00 44.81 4.16
371 373 2.787601 ATGTGGTATACGCTACACCG 57.212 50.000 7.97 0.00 34.94 4.94
372 374 1.748950 TGTGGTATACGCTACACCGA 58.251 50.000 7.31 0.00 34.94 4.69
373 375 2.090760 TGTGGTATACGCTACACCGAA 58.909 47.619 7.31 0.00 34.94 4.30
374 376 2.491298 TGTGGTATACGCTACACCGAAA 59.509 45.455 7.31 0.00 34.94 3.46
375 377 3.111098 GTGGTATACGCTACACCGAAAG 58.889 50.000 0.00 0.00 34.94 2.62
400 402 2.249844 CCAACTGGTGTTTAGACGGT 57.750 50.000 0.00 0.00 33.52 4.83
401 403 1.871039 CCAACTGGTGTTTAGACGGTG 59.129 52.381 0.00 0.00 33.52 4.94
402 404 2.557317 CAACTGGTGTTTAGACGGTGT 58.443 47.619 0.00 0.00 33.52 4.16
403 405 2.234300 ACTGGTGTTTAGACGGTGTG 57.766 50.000 0.00 0.00 0.00 3.82
404 406 1.483415 ACTGGTGTTTAGACGGTGTGT 59.517 47.619 0.00 0.00 0.00 3.72
405 407 2.694628 ACTGGTGTTTAGACGGTGTGTA 59.305 45.455 0.00 0.00 0.00 2.90
406 408 3.322828 ACTGGTGTTTAGACGGTGTGTAT 59.677 43.478 0.00 0.00 0.00 2.29
407 409 3.655486 TGGTGTTTAGACGGTGTGTATG 58.345 45.455 0.00 0.00 0.00 2.39
408 410 2.414138 GGTGTTTAGACGGTGTGTATGC 59.586 50.000 0.00 0.00 0.00 3.14
409 411 2.091588 GTGTTTAGACGGTGTGTATGCG 59.908 50.000 0.00 0.00 0.00 4.73
410 412 1.657094 GTTTAGACGGTGTGTATGCGG 59.343 52.381 0.00 0.00 0.00 5.69
411 413 0.889994 TTAGACGGTGTGTATGCGGT 59.110 50.000 0.00 0.00 0.00 5.68
412 414 0.889994 TAGACGGTGTGTATGCGGTT 59.110 50.000 0.00 0.00 0.00 4.44
413 415 0.669318 AGACGGTGTGTATGCGGTTG 60.669 55.000 0.00 0.00 0.00 3.77
414 416 1.632046 GACGGTGTGTATGCGGTTGG 61.632 60.000 0.00 0.00 0.00 3.77
415 417 1.374885 CGGTGTGTATGCGGTTGGA 60.375 57.895 0.00 0.00 0.00 3.53
416 418 1.358725 CGGTGTGTATGCGGTTGGAG 61.359 60.000 0.00 0.00 0.00 3.86
417 419 1.644786 GGTGTGTATGCGGTTGGAGC 61.645 60.000 0.00 0.00 0.00 4.70
418 420 1.739929 TGTGTATGCGGTTGGAGCG 60.740 57.895 0.00 0.00 42.73 5.03
419 421 1.447140 GTGTATGCGGTTGGAGCGA 60.447 57.895 3.50 0.00 42.41 4.93
420 422 1.153647 TGTATGCGGTTGGAGCGAG 60.154 57.895 3.50 0.00 42.41 5.03
421 423 1.153628 GTATGCGGTTGGAGCGAGT 60.154 57.895 3.50 0.00 42.41 4.18
422 424 1.153647 TATGCGGTTGGAGCGAGTG 60.154 57.895 3.50 0.00 42.41 3.51
423 425 2.572095 TATGCGGTTGGAGCGAGTGG 62.572 60.000 3.50 0.00 42.41 4.00
426 428 4.329545 GGTTGGAGCGAGTGGCCA 62.330 66.667 0.00 0.00 45.17 5.36
427 429 2.045926 GTTGGAGCGAGTGGCCAT 60.046 61.111 9.72 0.00 45.17 4.40
428 430 2.046023 TTGGAGCGAGTGGCCATG 60.046 61.111 9.72 2.98 45.17 3.66
429 431 3.626996 TTGGAGCGAGTGGCCATGG 62.627 63.158 9.72 7.63 45.17 3.66
430 432 3.785859 GGAGCGAGTGGCCATGGA 61.786 66.667 18.40 0.00 45.17 3.41
431 433 2.202987 GAGCGAGTGGCCATGGAG 60.203 66.667 18.40 1.95 45.17 3.86
432 434 3.746949 GAGCGAGTGGCCATGGAGG 62.747 68.421 18.40 0.00 45.17 4.30
433 435 4.101448 GCGAGTGGCCATGGAGGT 62.101 66.667 18.40 0.00 40.61 3.85
434 436 2.671070 CGAGTGGCCATGGAGGTT 59.329 61.111 18.40 0.00 40.61 3.50
435 437 1.002134 CGAGTGGCCATGGAGGTTT 60.002 57.895 18.40 0.00 40.61 3.27
436 438 0.609131 CGAGTGGCCATGGAGGTTTT 60.609 55.000 18.40 0.00 40.61 2.43
437 439 1.339631 CGAGTGGCCATGGAGGTTTTA 60.340 52.381 18.40 0.00 40.61 1.52
438 440 2.683742 CGAGTGGCCATGGAGGTTTTAT 60.684 50.000 18.40 0.00 40.61 1.40
439 441 2.952310 GAGTGGCCATGGAGGTTTTATC 59.048 50.000 18.40 0.00 40.61 1.75
440 442 2.031870 GTGGCCATGGAGGTTTTATCC 58.968 52.381 18.40 3.90 40.61 2.59
448 450 3.707316 TGGAGGTTTTATCCAACATGGG 58.293 45.455 0.00 0.00 43.87 4.00
449 451 3.076785 TGGAGGTTTTATCCAACATGGGT 59.923 43.478 0.00 0.00 43.87 4.51
450 452 3.447229 GGAGGTTTTATCCAACATGGGTG 59.553 47.826 0.00 0.00 38.32 4.61
451 453 3.440127 AGGTTTTATCCAACATGGGTGG 58.560 45.455 10.68 10.68 38.32 4.61
452 454 2.093711 GGTTTTATCCAACATGGGTGGC 60.094 50.000 11.84 0.00 38.32 5.01
453 455 2.564947 GTTTTATCCAACATGGGTGGCA 59.435 45.455 11.84 3.45 38.32 4.92
454 456 2.142356 TTATCCAACATGGGTGGCAG 57.858 50.000 11.84 0.00 38.32 4.85
455 457 0.395586 TATCCAACATGGGTGGCAGC 60.396 55.000 8.47 8.47 38.32 5.25
456 458 2.444004 ATCCAACATGGGTGGCAGCA 62.444 55.000 19.48 5.16 38.32 4.41
457 459 1.985662 CCAACATGGGTGGCAGCAT 60.986 57.895 19.48 7.36 32.67 3.79
458 460 0.683828 CCAACATGGGTGGCAGCATA 60.684 55.000 19.48 7.19 32.67 3.14
459 461 1.184431 CAACATGGGTGGCAGCATAA 58.816 50.000 19.48 3.65 0.00 1.90
460 462 1.758280 CAACATGGGTGGCAGCATAAT 59.242 47.619 19.48 6.00 0.00 1.28
461 463 1.696063 ACATGGGTGGCAGCATAATC 58.304 50.000 19.48 0.71 0.00 1.75
462 464 1.216175 ACATGGGTGGCAGCATAATCT 59.784 47.619 19.48 0.00 0.00 2.40
463 465 2.442878 ACATGGGTGGCAGCATAATCTA 59.557 45.455 19.48 0.00 0.00 1.98
464 466 2.638480 TGGGTGGCAGCATAATCTAC 57.362 50.000 19.48 0.00 0.00 2.59
465 467 1.843206 TGGGTGGCAGCATAATCTACA 59.157 47.619 19.48 1.33 0.00 2.74
466 468 2.158769 TGGGTGGCAGCATAATCTACAG 60.159 50.000 19.48 0.00 0.00 2.74
467 469 2.104792 GGGTGGCAGCATAATCTACAGA 59.895 50.000 19.48 0.00 0.00 3.41
468 470 3.244700 GGGTGGCAGCATAATCTACAGAT 60.245 47.826 19.48 0.00 36.07 2.90
469 471 3.999663 GGTGGCAGCATAATCTACAGATC 59.000 47.826 12.58 0.00 32.75 2.75
470 472 3.677121 GTGGCAGCATAATCTACAGATCG 59.323 47.826 0.00 0.00 32.75 3.69
471 473 3.257393 GGCAGCATAATCTACAGATCGG 58.743 50.000 0.00 0.00 32.75 4.18
472 474 3.306364 GGCAGCATAATCTACAGATCGGT 60.306 47.826 3.43 3.43 32.75 4.69
473 475 3.923461 GCAGCATAATCTACAGATCGGTC 59.077 47.826 0.39 0.00 32.75 4.79
474 476 4.489810 CAGCATAATCTACAGATCGGTCC 58.510 47.826 0.39 0.00 32.75 4.46
475 477 4.021981 CAGCATAATCTACAGATCGGTCCA 60.022 45.833 0.39 0.00 32.75 4.02
476 478 4.021894 AGCATAATCTACAGATCGGTCCAC 60.022 45.833 0.39 0.00 32.75 4.02
477 479 4.810790 CATAATCTACAGATCGGTCCACC 58.189 47.826 0.39 0.00 32.75 4.61
478 480 2.454336 ATCTACAGATCGGTCCACCA 57.546 50.000 0.39 0.00 35.14 4.17
479 481 2.454336 TCTACAGATCGGTCCACCAT 57.546 50.000 0.39 0.00 35.14 3.55
480 482 2.307768 TCTACAGATCGGTCCACCATC 58.692 52.381 0.39 0.00 35.14 3.51
481 483 2.091830 TCTACAGATCGGTCCACCATCT 60.092 50.000 0.39 1.40 35.63 2.90
482 484 1.573108 ACAGATCGGTCCACCATCTT 58.427 50.000 0.00 0.81 34.16 2.40
483 485 1.482593 ACAGATCGGTCCACCATCTTC 59.517 52.381 0.00 0.00 34.16 2.87
484 486 1.759445 CAGATCGGTCCACCATCTTCT 59.241 52.381 0.00 0.00 34.16 2.85
485 487 2.169352 CAGATCGGTCCACCATCTTCTT 59.831 50.000 0.00 0.00 34.16 2.52
486 488 2.432510 AGATCGGTCCACCATCTTCTTC 59.567 50.000 0.00 0.00 33.27 2.87
487 489 0.530744 TCGGTCCACCATCTTCTTCG 59.469 55.000 0.00 0.00 35.14 3.79
488 490 0.530744 CGGTCCACCATCTTCTTCGA 59.469 55.000 0.00 0.00 35.14 3.71
489 491 1.736032 CGGTCCACCATCTTCTTCGAC 60.736 57.143 0.00 0.00 35.14 4.20
490 492 1.630148 GTCCACCATCTTCTTCGACG 58.370 55.000 0.00 0.00 0.00 5.12
491 493 1.067776 GTCCACCATCTTCTTCGACGT 60.068 52.381 0.00 0.00 0.00 4.34
492 494 2.163010 GTCCACCATCTTCTTCGACGTA 59.837 50.000 0.00 0.00 0.00 3.57
493 495 2.422479 TCCACCATCTTCTTCGACGTAG 59.578 50.000 0.00 0.00 0.00 3.51
494 496 2.479730 CCACCATCTTCTTCGACGTAGG 60.480 54.545 1.44 0.00 0.00 3.18
495 497 1.134560 ACCATCTTCTTCGACGTAGGC 59.865 52.381 1.44 0.00 0.00 3.93
496 498 1.134367 CCATCTTCTTCGACGTAGGCA 59.866 52.381 1.44 0.00 0.00 4.75
497 499 2.223829 CCATCTTCTTCGACGTAGGCAT 60.224 50.000 1.44 0.00 0.00 4.40
498 500 3.004419 CCATCTTCTTCGACGTAGGCATA 59.996 47.826 1.44 0.00 0.00 3.14
499 501 3.965292 TCTTCTTCGACGTAGGCATAG 57.035 47.619 1.44 0.00 0.00 2.23
500 502 3.276857 TCTTCTTCGACGTAGGCATAGT 58.723 45.455 1.44 0.00 0.00 2.12
501 503 3.064958 TCTTCTTCGACGTAGGCATAGTG 59.935 47.826 1.44 0.00 0.00 2.74
502 504 2.362736 TCTTCGACGTAGGCATAGTGT 58.637 47.619 1.44 0.00 0.00 3.55
503 505 2.353889 TCTTCGACGTAGGCATAGTGTC 59.646 50.000 1.44 1.63 0.00 3.67
504 506 3.144300 CGACGTAGGCATAGTGTCG 57.856 57.895 15.67 15.67 45.06 4.35
505 507 0.316772 CGACGTAGGCATAGTGTCGG 60.317 60.000 19.62 6.66 46.19 4.79
506 508 0.737219 GACGTAGGCATAGTGTCGGT 59.263 55.000 0.00 0.00 0.00 4.69
507 509 1.133790 GACGTAGGCATAGTGTCGGTT 59.866 52.381 0.00 0.00 0.00 4.44
508 510 1.133790 ACGTAGGCATAGTGTCGGTTC 59.866 52.381 0.00 0.00 0.00 3.62
509 511 1.404391 CGTAGGCATAGTGTCGGTTCT 59.596 52.381 0.00 0.00 0.00 3.01
510 512 2.615447 CGTAGGCATAGTGTCGGTTCTA 59.385 50.000 0.00 0.00 0.00 2.10
511 513 3.547613 CGTAGGCATAGTGTCGGTTCTAC 60.548 52.174 0.00 0.00 0.00 2.59
512 514 1.404391 AGGCATAGTGTCGGTTCTACG 59.596 52.381 0.00 0.00 0.00 3.51
513 515 1.535437 GGCATAGTGTCGGTTCTACGG 60.535 57.143 0.00 0.00 0.00 4.02
514 516 1.535437 GCATAGTGTCGGTTCTACGGG 60.535 57.143 0.00 0.00 0.00 5.28
515 517 2.019249 CATAGTGTCGGTTCTACGGGA 58.981 52.381 0.00 0.00 0.00 5.14
516 518 1.453155 TAGTGTCGGTTCTACGGGAC 58.547 55.000 0.00 0.00 0.00 4.46
517 519 0.251077 AGTGTCGGTTCTACGGGACT 60.251 55.000 0.00 0.00 0.00 3.85
518 520 0.169894 GTGTCGGTTCTACGGGACTC 59.830 60.000 0.00 0.00 0.00 3.36
519 521 0.037303 TGTCGGTTCTACGGGACTCT 59.963 55.000 0.00 0.00 0.00 3.24
520 522 1.278985 TGTCGGTTCTACGGGACTCTA 59.721 52.381 0.00 0.00 0.00 2.43
521 523 2.092753 TGTCGGTTCTACGGGACTCTAT 60.093 50.000 0.00 0.00 0.00 1.98
522 524 2.948315 GTCGGTTCTACGGGACTCTATT 59.052 50.000 0.00 0.00 0.00 1.73
523 525 2.947652 TCGGTTCTACGGGACTCTATTG 59.052 50.000 0.00 0.00 0.00 1.90
524 526 2.686915 CGGTTCTACGGGACTCTATTGT 59.313 50.000 0.00 0.00 0.00 2.71
525 527 3.129988 CGGTTCTACGGGACTCTATTGTT 59.870 47.826 0.00 0.00 0.00 2.83
526 528 4.430908 GGTTCTACGGGACTCTATTGTTG 58.569 47.826 0.00 0.00 0.00 3.33
527 529 3.795623 TCTACGGGACTCTATTGTTGC 57.204 47.619 0.00 0.00 0.00 4.17
528 530 2.429610 TCTACGGGACTCTATTGTTGCC 59.570 50.000 0.00 0.00 0.00 4.52
529 531 0.252197 ACGGGACTCTATTGTTGCCC 59.748 55.000 0.00 0.00 0.00 5.36
530 532 0.251916 CGGGACTCTATTGTTGCCCA 59.748 55.000 0.00 0.00 35.26 5.36
531 533 1.134098 CGGGACTCTATTGTTGCCCAT 60.134 52.381 0.00 0.00 35.26 4.00
532 534 2.104111 CGGGACTCTATTGTTGCCCATA 59.896 50.000 0.00 0.00 35.26 2.74
533 535 3.244561 CGGGACTCTATTGTTGCCCATAT 60.245 47.826 0.00 0.00 35.26 1.78
534 536 4.074970 GGGACTCTATTGTTGCCCATATG 58.925 47.826 0.00 0.00 35.63 1.78
535 537 4.446311 GGGACTCTATTGTTGCCCATATGT 60.446 45.833 1.24 0.00 35.63 2.29
536 538 4.757149 GGACTCTATTGTTGCCCATATGTC 59.243 45.833 1.24 0.00 0.00 3.06
537 539 4.380531 ACTCTATTGTTGCCCATATGTCG 58.619 43.478 1.24 0.00 0.00 4.35
538 540 3.738982 TCTATTGTTGCCCATATGTCGG 58.261 45.455 1.24 0.00 0.00 4.79
539 541 2.435372 ATTGTTGCCCATATGTCGGT 57.565 45.000 1.24 0.00 0.00 4.69
540 542 2.208132 TTGTTGCCCATATGTCGGTT 57.792 45.000 1.24 0.00 0.00 4.44
541 543 2.208132 TGTTGCCCATATGTCGGTTT 57.792 45.000 1.24 0.00 0.00 3.27
542 544 2.520069 TGTTGCCCATATGTCGGTTTT 58.480 42.857 1.24 0.00 0.00 2.43
543 545 2.894126 TGTTGCCCATATGTCGGTTTTT 59.106 40.909 1.24 0.00 0.00 1.94
563 565 5.669164 TTTTTCTTTGTTAGGCTGTTGGT 57.331 34.783 0.00 0.00 0.00 3.67
564 566 4.647424 TTTCTTTGTTAGGCTGTTGGTG 57.353 40.909 0.00 0.00 0.00 4.17
565 567 3.290948 TCTTTGTTAGGCTGTTGGTGT 57.709 42.857 0.00 0.00 0.00 4.16
566 568 3.626930 TCTTTGTTAGGCTGTTGGTGTT 58.373 40.909 0.00 0.00 0.00 3.32
567 569 4.020543 TCTTTGTTAGGCTGTTGGTGTTT 58.979 39.130 0.00 0.00 0.00 2.83
568 570 3.791973 TTGTTAGGCTGTTGGTGTTTG 57.208 42.857 0.00 0.00 0.00 2.93
569 571 2.028130 TGTTAGGCTGTTGGTGTTTGG 58.972 47.619 0.00 0.00 0.00 3.28
570 572 2.028876 GTTAGGCTGTTGGTGTTTGGT 58.971 47.619 0.00 0.00 0.00 3.67
571 573 2.429250 GTTAGGCTGTTGGTGTTTGGTT 59.571 45.455 0.00 0.00 0.00 3.67
572 574 0.823460 AGGCTGTTGGTGTTTGGTTG 59.177 50.000 0.00 0.00 0.00 3.77
573 575 0.534873 GGCTGTTGGTGTTTGGTTGT 59.465 50.000 0.00 0.00 0.00 3.32
574 576 1.639280 GCTGTTGGTGTTTGGTTGTG 58.361 50.000 0.00 0.00 0.00 3.33
575 577 1.067213 GCTGTTGGTGTTTGGTTGTGT 60.067 47.619 0.00 0.00 0.00 3.72
576 578 2.605030 CTGTTGGTGTTTGGTTGTGTG 58.395 47.619 0.00 0.00 0.00 3.82
577 579 1.337260 TGTTGGTGTTTGGTTGTGTGC 60.337 47.619 0.00 0.00 0.00 4.57
578 580 0.969149 TTGGTGTTTGGTTGTGTGCA 59.031 45.000 0.00 0.00 0.00 4.57
579 581 1.189752 TGGTGTTTGGTTGTGTGCAT 58.810 45.000 0.00 0.00 0.00 3.96
580 582 1.552337 TGGTGTTTGGTTGTGTGCATT 59.448 42.857 0.00 0.00 0.00 3.56
581 583 2.027745 TGGTGTTTGGTTGTGTGCATTT 60.028 40.909 0.00 0.00 0.00 2.32
582 584 3.006247 GGTGTTTGGTTGTGTGCATTTT 58.994 40.909 0.00 0.00 0.00 1.82
583 585 4.184629 GGTGTTTGGTTGTGTGCATTTTA 58.815 39.130 0.00 0.00 0.00 1.52
584 586 4.269844 GGTGTTTGGTTGTGTGCATTTTAG 59.730 41.667 0.00 0.00 0.00 1.85
585 587 4.867608 GTGTTTGGTTGTGTGCATTTTAGT 59.132 37.500 0.00 0.00 0.00 2.24
586 588 5.350091 GTGTTTGGTTGTGTGCATTTTAGTT 59.650 36.000 0.00 0.00 0.00 2.24
587 589 6.531948 GTGTTTGGTTGTGTGCATTTTAGTTA 59.468 34.615 0.00 0.00 0.00 2.24
588 590 7.223777 GTGTTTGGTTGTGTGCATTTTAGTTAT 59.776 33.333 0.00 0.00 0.00 1.89
589 591 7.223582 TGTTTGGTTGTGTGCATTTTAGTTATG 59.776 33.333 0.00 0.00 0.00 1.90
590 592 5.226396 TGGTTGTGTGCATTTTAGTTATGC 58.774 37.500 0.00 0.00 46.63 3.14
597 599 4.907879 GCATTTTAGTTATGCAGAGGCT 57.092 40.909 0.00 0.00 45.93 4.58
599 601 6.377327 GCATTTTAGTTATGCAGAGGCTAA 57.623 37.500 0.00 0.00 45.93 3.09
600 602 6.433766 GCATTTTAGTTATGCAGAGGCTAAG 58.566 40.000 0.00 0.00 45.93 2.18
601 603 6.038714 GCATTTTAGTTATGCAGAGGCTAAGT 59.961 38.462 0.00 0.00 45.93 2.24
602 604 6.985188 TTTTAGTTATGCAGAGGCTAAGTG 57.015 37.500 0.00 0.00 41.91 3.16
603 605 5.677319 TTAGTTATGCAGAGGCTAAGTGT 57.323 39.130 0.00 0.00 41.91 3.55
604 606 6.785337 TTAGTTATGCAGAGGCTAAGTGTA 57.215 37.500 0.00 0.00 41.91 2.90
605 607 5.677319 AGTTATGCAGAGGCTAAGTGTAA 57.323 39.130 0.00 0.00 41.91 2.41
606 608 6.240549 AGTTATGCAGAGGCTAAGTGTAAT 57.759 37.500 0.00 0.00 41.91 1.89
607 609 6.653989 AGTTATGCAGAGGCTAAGTGTAATT 58.346 36.000 0.00 0.00 41.91 1.40
608 610 7.112779 AGTTATGCAGAGGCTAAGTGTAATTT 58.887 34.615 0.00 0.00 41.91 1.82
609 611 5.824904 ATGCAGAGGCTAAGTGTAATTTG 57.175 39.130 0.00 0.00 41.91 2.32
610 612 4.651778 TGCAGAGGCTAAGTGTAATTTGT 58.348 39.130 0.00 0.00 41.91 2.83
611 613 4.695455 TGCAGAGGCTAAGTGTAATTTGTC 59.305 41.667 0.00 0.00 41.91 3.18
612 614 4.695455 GCAGAGGCTAAGTGTAATTTGTCA 59.305 41.667 0.00 0.00 36.96 3.58
613 615 5.355350 GCAGAGGCTAAGTGTAATTTGTCAT 59.645 40.000 0.00 0.00 36.96 3.06
614 616 6.676456 GCAGAGGCTAAGTGTAATTTGTCATG 60.676 42.308 0.00 0.00 36.96 3.07
615 617 6.372659 CAGAGGCTAAGTGTAATTTGTCATGT 59.627 38.462 0.00 0.00 0.00 3.21
616 618 6.942576 AGAGGCTAAGTGTAATTTGTCATGTT 59.057 34.615 0.00 0.00 0.00 2.71
617 619 7.448469 AGAGGCTAAGTGTAATTTGTCATGTTT 59.552 33.333 0.00 0.00 0.00 2.83
618 620 7.951591 AGGCTAAGTGTAATTTGTCATGTTTT 58.048 30.769 0.00 0.00 0.00 2.43
619 621 9.073475 AGGCTAAGTGTAATTTGTCATGTTTTA 57.927 29.630 0.00 0.00 0.00 1.52
620 622 9.855021 GGCTAAGTGTAATTTGTCATGTTTTAT 57.145 29.630 0.00 0.00 0.00 1.40
633 635 8.806429 TGTCATGTTTTATATCCACTTGATGT 57.194 30.769 0.00 0.00 34.76 3.06
725 728 7.657761 TCTTCTTGGAGAATTCACTAAAGTCAC 59.342 37.037 8.44 0.00 34.40 3.67
747 750 5.237344 CACGATCTGATGGAAATAAAGGGAC 59.763 44.000 6.67 0.00 0.00 4.46
749 752 4.150897 TCTGATGGAAATAAAGGGACGG 57.849 45.455 0.00 0.00 0.00 4.79
759 762 5.638596 AATAAAGGGACGGTTTGATTGAC 57.361 39.130 0.00 0.00 0.00 3.18
769 772 2.493278 GGTTTGATTGACATGGGTGGAG 59.507 50.000 0.00 0.00 0.00 3.86
772 775 4.320546 TTGATTGACATGGGTGGAGATT 57.679 40.909 0.00 0.00 0.00 2.40
778 781 8.058235 TGATTGACATGGGTGGAGATTTAATTA 58.942 33.333 0.00 0.00 0.00 1.40
852 1283 5.248248 TCAGGACAGGAGTACAATGATTCAA 59.752 40.000 0.00 0.00 0.00 2.69
868 1299 5.891451 TGATTCAATCTGATTCGTACTCGT 58.109 37.500 0.00 0.00 38.33 4.18
872 1303 2.800694 TCTGATTCGTACTCGTGTCG 57.199 50.000 0.00 0.00 38.33 4.35
882 1313 3.605461 CGTACTCGTGTCGTTCAGAAAGA 60.605 47.826 0.00 0.00 0.00 2.52
933 1365 1.303309 GGTACCATGATGCAGTCTGC 58.697 55.000 18.32 18.32 45.29 4.26
944 1376 1.548986 GCAGTCTGCACAACAAACAC 58.451 50.000 20.16 0.00 44.26 3.32
945 1377 1.135431 GCAGTCTGCACAACAAACACA 60.135 47.619 20.16 0.00 44.26 3.72
946 1378 2.670789 GCAGTCTGCACAACAAACACAA 60.671 45.455 20.16 0.00 44.26 3.33
947 1379 3.173599 CAGTCTGCACAACAAACACAAG 58.826 45.455 0.00 0.00 0.00 3.16
948 1380 2.819608 AGTCTGCACAACAAACACAAGT 59.180 40.909 0.00 0.00 0.00 3.16
949 1381 2.916716 GTCTGCACAACAAACACAAGTG 59.083 45.455 0.00 0.00 0.00 3.16
964 1396 2.030893 ACAAGTGTGCCATGTTGATTCG 60.031 45.455 0.00 0.00 0.00 3.34
977 1409 0.790207 TGATTCGTTCGTTCAGCTGC 59.210 50.000 9.47 0.00 0.00 5.25
985 1417 1.374631 CGTTCAGCTGCAGCCACTA 60.375 57.895 34.39 15.05 43.38 2.74
991 1423 1.673665 GCTGCAGCCACTAAGCACT 60.674 57.895 28.76 0.00 35.69 4.40
1140 1575 1.735198 CACGGTCACCAACGCGTAT 60.735 57.895 14.46 0.00 34.43 3.06
1333 1780 0.034767 CACCATCATCAGCACCCTGT 60.035 55.000 0.00 0.00 40.09 4.00
1342 1789 2.203337 GCACCCTGTGGCTCAACA 60.203 61.111 0.00 0.00 33.64 3.33
1353 1800 2.177950 GCTCAACAGCATGGTCAGG 58.822 57.895 0.00 0.00 46.06 3.86
1470 1917 4.060038 CCGTACTGGTCCGGCGTT 62.060 66.667 6.01 0.00 37.43 4.84
1714 2163 2.127758 CGCTGTTCAAACGGTCGC 60.128 61.111 3.80 0.00 37.60 5.19
2195 2662 2.415010 CATCAGCGTCCCTCTCCG 59.585 66.667 0.00 0.00 0.00 4.63
2355 2826 1.071019 CGGTGGACTTCGACATCACG 61.071 60.000 0.00 0.00 0.00 4.35
2442 2913 1.745115 GGCGCTGCACAAGTATGGA 60.745 57.895 7.64 0.00 0.00 3.41
2667 3141 2.049156 TGCTCCGACGACTTGCAG 60.049 61.111 0.00 0.00 0.00 4.41
2739 3213 1.674057 CAGGGTTTGCTCGTCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
2799 3273 4.765339 TGACCTCTGAGAATTTGTACGAGA 59.235 41.667 6.17 0.00 0.00 4.04
2803 3277 6.153680 ACCTCTGAGAATTTGTACGAGATTCT 59.846 38.462 6.17 14.37 41.47 2.40
2805 3279 7.158099 TCTGAGAATTTGTACGAGATTCTGA 57.842 36.000 17.60 11.43 39.52 3.27
2823 3297 2.183858 GAGCCGGCCGTTTCACTTTC 62.184 60.000 26.15 5.96 0.00 2.62
2904 3597 9.667989 TTTTTAACTTCGCTTTGAACCTTATAC 57.332 29.630 0.00 0.00 31.87 1.47
2929 3622 4.732923 TCGTTTGCATTTTCAACTCGAAAG 59.267 37.500 0.00 0.00 44.32 2.62
2958 3651 4.435651 GCTTGTGATAACGAACTTGTAGGC 60.436 45.833 0.00 0.00 0.00 3.93
2968 3661 2.867109 ACTTGTAGGCTTGCATCACT 57.133 45.000 0.00 0.00 0.00 3.41
3129 4168 2.999355 TGCTTTTTGTTGTGAACTTGGC 59.001 40.909 0.00 0.00 0.00 4.52
3160 4199 2.358582 TGCATGTGTGAACTTGTTGGAG 59.641 45.455 0.00 0.00 0.00 3.86
3189 4228 4.642437 TGCATGGTTAACTTGTGAACTTGA 59.358 37.500 5.42 0.00 0.00 3.02
3202 4241 6.114187 TGTGAACTTGATGGAGATGTAAGT 57.886 37.500 0.00 0.00 33.36 2.24
3286 4329 1.005394 AACACTCGGCTTACACCCG 60.005 57.895 0.00 0.00 46.88 5.28
3297 4340 2.093341 GCTTACACCCGAGGACCAAATA 60.093 50.000 0.00 0.00 0.00 1.40
3494 4537 4.168291 TGGACACGTGGCTGCACA 62.168 61.111 23.08 7.78 0.00 4.57
3503 4546 2.285773 TGGCTGCACATCGTCTCCT 61.286 57.895 0.50 0.00 0.00 3.69
3526 4569 2.230266 TGGGTGAAAAATTAAGCCGAGC 59.770 45.455 0.00 0.00 34.11 5.03
3569 4612 5.398711 CGACACTTGACTTACTTGTACACTC 59.601 44.000 0.00 0.00 0.00 3.51
3605 4648 6.823689 ACTGTCCTTGGCTTAATATAACACTG 59.176 38.462 0.00 0.00 0.00 3.66
3613 4656 7.294584 TGGCTTAATATAACACTGGGCTTAAT 58.705 34.615 0.00 0.00 0.00 1.40
3624 4667 7.612065 ACACTGGGCTTAATAGTGATACATA 57.388 36.000 10.24 0.00 43.35 2.29
3626 4669 6.591834 CACTGGGCTTAATAGTGATACATAGC 59.408 42.308 0.00 0.00 43.35 2.97
3659 4703 1.389555 CCCGGGTCTGAAAATAAGCC 58.610 55.000 14.18 0.00 0.00 4.35
3665 4709 4.510571 GGGTCTGAAAATAAGCCGAGTAA 58.489 43.478 0.00 0.00 0.00 2.24
3689 4733 0.107848 TCCGCTAGCCTTTGTAAGCC 60.108 55.000 9.66 0.00 0.00 4.35
3690 4734 1.429148 CCGCTAGCCTTTGTAAGCCG 61.429 60.000 9.66 0.00 0.00 5.52
3691 4735 0.739813 CGCTAGCCTTTGTAAGCCGT 60.740 55.000 9.66 0.00 0.00 5.68
3692 4736 1.007580 GCTAGCCTTTGTAAGCCGTC 58.992 55.000 2.29 0.00 0.00 4.79
3693 4737 1.674817 GCTAGCCTTTGTAAGCCGTCA 60.675 52.381 2.29 0.00 0.00 4.35
3694 4738 2.906354 CTAGCCTTTGTAAGCCGTCAT 58.094 47.619 0.00 0.00 0.00 3.06
3695 4739 1.453155 AGCCTTTGTAAGCCGTCATG 58.547 50.000 0.00 0.00 0.00 3.07
3696 4740 1.165270 GCCTTTGTAAGCCGTCATGT 58.835 50.000 0.00 0.00 0.00 3.21
3697 4741 2.027561 AGCCTTTGTAAGCCGTCATGTA 60.028 45.455 0.00 0.00 0.00 2.29
3698 4742 2.943033 GCCTTTGTAAGCCGTCATGTAT 59.057 45.455 0.00 0.00 0.00 2.29
3699 4743 3.002348 GCCTTTGTAAGCCGTCATGTATC 59.998 47.826 0.00 0.00 0.00 2.24
3700 4744 4.442706 CCTTTGTAAGCCGTCATGTATCT 58.557 43.478 0.00 0.00 0.00 1.98
3701 4745 4.508124 CCTTTGTAAGCCGTCATGTATCTC 59.492 45.833 0.00 0.00 0.00 2.75
3702 4746 3.349488 TGTAAGCCGTCATGTATCTCG 57.651 47.619 0.00 0.00 0.00 4.04
3703 4747 2.034179 TGTAAGCCGTCATGTATCTCGG 59.966 50.000 0.00 0.00 44.86 4.63
3706 4750 3.967886 CCGTCATGTATCTCGGCTT 57.032 52.632 0.00 0.00 36.68 4.35
3708 4752 3.577649 CCGTCATGTATCTCGGCTTAT 57.422 47.619 0.00 0.00 36.68 1.73
3709 4753 4.696899 CCGTCATGTATCTCGGCTTATA 57.303 45.455 0.00 0.00 36.68 0.98
3710 4754 5.250235 CCGTCATGTATCTCGGCTTATAT 57.750 43.478 0.00 0.00 36.68 0.86
3711 4755 5.037385 CCGTCATGTATCTCGGCTTATATG 58.963 45.833 0.00 0.00 36.68 1.78
3712 4756 5.393135 CCGTCATGTATCTCGGCTTATATGT 60.393 44.000 0.00 0.00 36.68 2.29
3713 4757 6.183360 CCGTCATGTATCTCGGCTTATATGTA 60.183 42.308 0.00 0.00 36.68 2.29
3714 4758 7.248437 CGTCATGTATCTCGGCTTATATGTAA 58.752 38.462 0.00 0.00 0.00 2.41
3715 4759 7.429630 CGTCATGTATCTCGGCTTATATGTAAG 59.570 40.741 4.93 4.93 40.25 2.34
3726 4770 5.386958 CTTATATGTAAGCCGAGTAGCCA 57.613 43.478 0.00 0.00 31.63 4.75
3727 4771 5.779922 CTTATATGTAAGCCGAGTAGCCAA 58.220 41.667 0.00 0.00 31.63 4.52
3728 4772 2.604046 ATGTAAGCCGAGTAGCCAAG 57.396 50.000 0.00 0.00 0.00 3.61
3729 4773 1.552578 TGTAAGCCGAGTAGCCAAGA 58.447 50.000 0.00 0.00 0.00 3.02
3730 4774 1.897133 TGTAAGCCGAGTAGCCAAGAA 59.103 47.619 0.00 0.00 0.00 2.52
3731 4775 2.300723 TGTAAGCCGAGTAGCCAAGAAA 59.699 45.455 0.00 0.00 0.00 2.52
3732 4776 1.809684 AAGCCGAGTAGCCAAGAAAC 58.190 50.000 0.00 0.00 0.00 2.78
3733 4777 0.685097 AGCCGAGTAGCCAAGAAACA 59.315 50.000 0.00 0.00 0.00 2.83
3734 4778 1.071699 AGCCGAGTAGCCAAGAAACAA 59.928 47.619 0.00 0.00 0.00 2.83
3735 4779 1.197036 GCCGAGTAGCCAAGAAACAAC 59.803 52.381 0.00 0.00 0.00 3.32
3736 4780 2.489971 CCGAGTAGCCAAGAAACAACA 58.510 47.619 0.00 0.00 0.00 3.33
3737 4781 2.223377 CCGAGTAGCCAAGAAACAACAC 59.777 50.000 0.00 0.00 0.00 3.32
3738 4782 3.131396 CGAGTAGCCAAGAAACAACACT 58.869 45.455 0.00 0.00 0.00 3.55
3739 4783 3.184581 CGAGTAGCCAAGAAACAACACTC 59.815 47.826 0.00 0.00 0.00 3.51
3740 4784 3.131396 AGTAGCCAAGAAACAACACTCG 58.869 45.455 0.00 0.00 0.00 4.18
3741 4785 2.038387 AGCCAAGAAACAACACTCGT 57.962 45.000 0.00 0.00 0.00 4.18
3742 4786 1.940613 AGCCAAGAAACAACACTCGTC 59.059 47.619 0.00 0.00 0.00 4.20
3743 4787 1.940613 GCCAAGAAACAACACTCGTCT 59.059 47.619 0.00 0.00 0.00 4.18
3744 4788 2.354821 GCCAAGAAACAACACTCGTCTT 59.645 45.455 0.00 0.00 0.00 3.01
3745 4789 3.558418 GCCAAGAAACAACACTCGTCTTA 59.442 43.478 0.00 0.00 0.00 2.10
3746 4790 4.552184 GCCAAGAAACAACACTCGTCTTAC 60.552 45.833 0.00 0.00 0.00 2.34
3747 4791 4.569162 CCAAGAAACAACACTCGTCTTACA 59.431 41.667 0.00 0.00 0.00 2.41
3748 4792 5.490213 CAAGAAACAACACTCGTCTTACAC 58.510 41.667 0.00 0.00 0.00 2.90
3774 4818 6.531439 GCATAAGCCGGTATAAATAAAGTCG 58.469 40.000 1.90 0.00 33.58 4.18
3775 4819 6.366877 GCATAAGCCGGTATAAATAAAGTCGA 59.633 38.462 1.90 0.00 33.58 4.20
3776 4820 7.411588 GCATAAGCCGGTATAAATAAAGTCGAG 60.412 40.741 1.90 0.00 33.58 4.04
3777 4821 5.779529 AGCCGGTATAAATAAAGTCGAGA 57.220 39.130 1.90 0.00 0.00 4.04
3778 4822 5.770417 AGCCGGTATAAATAAAGTCGAGAG 58.230 41.667 1.90 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 7.923888 AGATGCAACACAAATCTACATGATAC 58.076 34.615 0.00 0.00 34.45 2.24
115 117 7.351414 TCACTCGACATGAACAAGAAAATAG 57.649 36.000 0.00 0.00 0.00 1.73
117 119 6.618287 TTCACTCGACATGAACAAGAAAAT 57.382 33.333 0.00 0.00 31.11 1.82
160 162 1.226379 GCACCGCACCATCAAATCG 60.226 57.895 0.00 0.00 0.00 3.34
161 163 1.064060 GTAGCACCGCACCATCAAATC 59.936 52.381 0.00 0.00 0.00 2.17
168 170 1.301401 GAACAGTAGCACCGCACCA 60.301 57.895 0.00 0.00 0.00 4.17
172 174 0.531200 ACCTAGAACAGTAGCACCGC 59.469 55.000 0.00 0.00 0.00 5.68
173 175 1.544691 ACACCTAGAACAGTAGCACCG 59.455 52.381 0.00 0.00 0.00 4.94
175 177 4.218852 AGAGAACACCTAGAACAGTAGCAC 59.781 45.833 0.00 0.00 0.00 4.40
182 184 4.737578 AGTACCAGAGAACACCTAGAACA 58.262 43.478 0.00 0.00 0.00 3.18
195 197 9.831737 CAAAATGTTCAAATTAGAGTACCAGAG 57.168 33.333 0.00 0.00 0.00 3.35
196 198 9.349713 ACAAAATGTTCAAATTAGAGTACCAGA 57.650 29.630 0.00 0.00 0.00 3.86
197 199 9.965824 AACAAAATGTTCAAATTAGAGTACCAG 57.034 29.630 0.00 0.00 35.27 4.00
221 223 5.753921 CCTCCTGAATACTAATCGGTGAAAC 59.246 44.000 0.00 0.00 0.00 2.78
228 230 6.987386 ACTTGATCCTCCTGAATACTAATCG 58.013 40.000 0.00 0.00 0.00 3.34
252 254 4.178956 AGCCAAAACCTCAACCTTCTAA 57.821 40.909 0.00 0.00 0.00 2.10
254 256 2.755952 AGCCAAAACCTCAACCTTCT 57.244 45.000 0.00 0.00 0.00 2.85
294 296 8.271458 TGTATAGGAGATGAGTTTTTGCCATTA 58.729 33.333 0.00 0.00 0.00 1.90
295 297 7.118723 TGTATAGGAGATGAGTTTTTGCCATT 58.881 34.615 0.00 0.00 0.00 3.16
296 298 6.662755 TGTATAGGAGATGAGTTTTTGCCAT 58.337 36.000 0.00 0.00 0.00 4.40
298 300 5.008118 GCTGTATAGGAGATGAGTTTTTGCC 59.992 44.000 0.00 0.00 0.00 4.52
299 301 5.819901 AGCTGTATAGGAGATGAGTTTTTGC 59.180 40.000 0.00 0.00 0.00 3.68
300 302 7.856145 AAGCTGTATAGGAGATGAGTTTTTG 57.144 36.000 0.00 0.00 0.00 2.44
304 306 9.771534 GAAAATAAGCTGTATAGGAGATGAGTT 57.228 33.333 0.00 0.00 0.00 3.01
305 307 8.371699 GGAAAATAAGCTGTATAGGAGATGAGT 58.628 37.037 0.00 0.00 0.00 3.41
306 308 7.543868 CGGAAAATAAGCTGTATAGGAGATGAG 59.456 40.741 0.00 0.00 0.00 2.90
307 309 7.015292 ACGGAAAATAAGCTGTATAGGAGATGA 59.985 37.037 0.00 0.00 0.00 2.92
308 310 7.155328 ACGGAAAATAAGCTGTATAGGAGATG 58.845 38.462 0.00 0.00 0.00 2.90
309 311 7.304497 ACGGAAAATAAGCTGTATAGGAGAT 57.696 36.000 0.00 0.00 0.00 2.75
310 312 6.726490 ACGGAAAATAAGCTGTATAGGAGA 57.274 37.500 0.00 0.00 0.00 3.71
311 313 6.761714 ACAACGGAAAATAAGCTGTATAGGAG 59.238 38.462 0.00 0.00 0.00 3.69
312 314 6.646267 ACAACGGAAAATAAGCTGTATAGGA 58.354 36.000 0.00 0.00 0.00 2.94
313 315 6.920569 ACAACGGAAAATAAGCTGTATAGG 57.079 37.500 0.00 0.00 0.00 2.57
314 316 7.553034 CGTACAACGGAAAATAAGCTGTATAG 58.447 38.462 0.00 0.00 38.08 1.31
315 317 6.019640 GCGTACAACGGAAAATAAGCTGTATA 60.020 38.462 1.25 0.00 42.82 1.47
316 318 5.220529 GCGTACAACGGAAAATAAGCTGTAT 60.221 40.000 1.25 0.00 42.82 2.29
317 319 4.091800 GCGTACAACGGAAAATAAGCTGTA 59.908 41.667 1.25 0.00 42.82 2.74
318 320 3.120442 GCGTACAACGGAAAATAAGCTGT 60.120 43.478 1.25 0.00 42.82 4.40
319 321 3.120477 TGCGTACAACGGAAAATAAGCTG 60.120 43.478 1.25 0.00 39.47 4.24
320 322 3.068560 TGCGTACAACGGAAAATAAGCT 58.931 40.909 1.25 0.00 39.47 3.74
321 323 3.120442 AGTGCGTACAACGGAAAATAAGC 60.120 43.478 6.38 0.00 45.07 3.09
322 324 4.634991 GAGTGCGTACAACGGAAAATAAG 58.365 43.478 6.38 0.00 45.07 1.73
323 325 3.121611 CGAGTGCGTACAACGGAAAATAA 59.878 43.478 6.38 0.00 45.07 1.40
324 326 2.662637 CGAGTGCGTACAACGGAAAATA 59.337 45.455 6.38 0.00 45.07 1.40
325 327 1.458064 CGAGTGCGTACAACGGAAAAT 59.542 47.619 6.38 0.00 45.07 1.82
326 328 0.854062 CGAGTGCGTACAACGGAAAA 59.146 50.000 6.38 0.00 45.07 2.29
327 329 1.550659 GCGAGTGCGTACAACGGAAA 61.551 55.000 19.58 0.00 45.07 3.13
328 330 2.017783 GCGAGTGCGTACAACGGAA 61.018 57.895 19.58 0.00 45.07 4.30
329 331 2.429571 GCGAGTGCGTACAACGGA 60.430 61.111 19.58 0.00 42.82 4.69
339 341 0.736325 ACCACATACGAAGCGAGTGC 60.736 55.000 0.00 0.00 43.24 4.40
340 342 2.554806 TACCACATACGAAGCGAGTG 57.445 50.000 0.00 0.00 0.00 3.51
341 343 4.220533 GTATACCACATACGAAGCGAGT 57.779 45.455 0.00 0.00 0.00 4.18
350 352 3.250762 TCGGTGTAGCGTATACCACATAC 59.749 47.826 10.79 4.28 39.66 2.39
351 353 3.475575 TCGGTGTAGCGTATACCACATA 58.524 45.455 10.79 0.00 39.66 2.29
352 354 2.300433 TCGGTGTAGCGTATACCACAT 58.700 47.619 10.79 0.00 39.66 3.21
353 355 1.748950 TCGGTGTAGCGTATACCACA 58.251 50.000 10.79 4.51 39.66 4.17
354 356 2.849880 TTCGGTGTAGCGTATACCAC 57.150 50.000 3.29 0.00 39.66 4.16
355 357 2.099592 CCTTTCGGTGTAGCGTATACCA 59.900 50.000 3.29 0.00 39.66 3.25
356 358 2.358898 TCCTTTCGGTGTAGCGTATACC 59.641 50.000 3.29 0.00 36.68 2.73
357 359 3.065925 ACTCCTTTCGGTGTAGCGTATAC 59.934 47.826 3.29 0.00 35.36 1.47
358 360 3.282021 ACTCCTTTCGGTGTAGCGTATA 58.718 45.455 3.29 0.00 35.36 1.47
359 361 2.097825 ACTCCTTTCGGTGTAGCGTAT 58.902 47.619 3.29 0.00 35.36 3.06
360 362 1.538047 ACTCCTTTCGGTGTAGCGTA 58.462 50.000 3.29 0.00 35.36 4.42
361 363 1.200948 GTACTCCTTTCGGTGTAGCGT 59.799 52.381 3.29 0.00 39.28 5.07
362 364 1.468736 GGTACTCCTTTCGGTGTAGCG 60.469 57.143 6.93 0.00 43.53 4.26
363 365 2.290531 GGTACTCCTTTCGGTGTAGC 57.709 55.000 6.93 6.93 45.07 3.58
364 366 3.257624 AGTTGGTACTCCTTTCGGTGTAG 59.742 47.826 0.00 0.00 39.28 2.74
365 367 3.006110 CAGTTGGTACTCCTTTCGGTGTA 59.994 47.826 0.00 0.00 38.03 2.90
366 368 2.044758 AGTTGGTACTCCTTTCGGTGT 58.955 47.619 0.00 0.00 40.05 4.16
367 369 2.413837 CAGTTGGTACTCCTTTCGGTG 58.586 52.381 0.00 0.00 30.26 4.94
368 370 1.346722 CCAGTTGGTACTCCTTTCGGT 59.653 52.381 0.00 0.00 30.26 4.69
369 371 2.094762 CCAGTTGGTACTCCTTTCGG 57.905 55.000 0.00 0.00 30.26 4.30
381 383 1.871039 CACCGTCTAAACACCAGTTGG 59.129 52.381 0.00 0.00 38.17 3.77
382 384 2.286833 CACACCGTCTAAACACCAGTTG 59.713 50.000 0.00 0.00 38.17 3.16
383 385 2.093341 ACACACCGTCTAAACACCAGTT 60.093 45.455 0.00 0.00 40.40 3.16
384 386 1.483415 ACACACCGTCTAAACACCAGT 59.517 47.619 0.00 0.00 0.00 4.00
385 387 2.234300 ACACACCGTCTAAACACCAG 57.766 50.000 0.00 0.00 0.00 4.00
386 388 3.655486 CATACACACCGTCTAAACACCA 58.345 45.455 0.00 0.00 0.00 4.17
387 389 2.414138 GCATACACACCGTCTAAACACC 59.586 50.000 0.00 0.00 0.00 4.16
388 390 2.091588 CGCATACACACCGTCTAAACAC 59.908 50.000 0.00 0.00 0.00 3.32
389 391 2.330286 CGCATACACACCGTCTAAACA 58.670 47.619 0.00 0.00 0.00 2.83
390 392 1.657094 CCGCATACACACCGTCTAAAC 59.343 52.381 0.00 0.00 0.00 2.01
391 393 1.273048 ACCGCATACACACCGTCTAAA 59.727 47.619 0.00 0.00 0.00 1.85
392 394 0.889994 ACCGCATACACACCGTCTAA 59.110 50.000 0.00 0.00 0.00 2.10
393 395 0.889994 AACCGCATACACACCGTCTA 59.110 50.000 0.00 0.00 0.00 2.59
394 396 0.669318 CAACCGCATACACACCGTCT 60.669 55.000 0.00 0.00 0.00 4.18
395 397 1.632046 CCAACCGCATACACACCGTC 61.632 60.000 0.00 0.00 0.00 4.79
396 398 1.669760 CCAACCGCATACACACCGT 60.670 57.895 0.00 0.00 0.00 4.83
397 399 1.358725 CTCCAACCGCATACACACCG 61.359 60.000 0.00 0.00 0.00 4.94
398 400 1.644786 GCTCCAACCGCATACACACC 61.645 60.000 0.00 0.00 0.00 4.16
399 401 1.794222 GCTCCAACCGCATACACAC 59.206 57.895 0.00 0.00 0.00 3.82
400 402 1.739929 CGCTCCAACCGCATACACA 60.740 57.895 0.00 0.00 0.00 3.72
401 403 1.421410 CTCGCTCCAACCGCATACAC 61.421 60.000 0.00 0.00 0.00 2.90
402 404 1.153647 CTCGCTCCAACCGCATACA 60.154 57.895 0.00 0.00 0.00 2.29
403 405 1.153628 ACTCGCTCCAACCGCATAC 60.154 57.895 0.00 0.00 0.00 2.39
404 406 1.153647 CACTCGCTCCAACCGCATA 60.154 57.895 0.00 0.00 0.00 3.14
405 407 2.434884 CACTCGCTCCAACCGCAT 60.435 61.111 0.00 0.00 0.00 4.73
406 408 4.680237 CCACTCGCTCCAACCGCA 62.680 66.667 0.00 0.00 0.00 5.69
409 411 3.628646 ATGGCCACTCGCTCCAACC 62.629 63.158 8.16 0.00 37.74 3.77
410 412 2.045926 ATGGCCACTCGCTCCAAC 60.046 61.111 8.16 0.00 37.74 3.77
411 413 2.046023 CATGGCCACTCGCTCCAA 60.046 61.111 8.16 0.00 37.74 3.53
412 414 4.100084 CCATGGCCACTCGCTCCA 62.100 66.667 8.16 0.00 37.74 3.86
413 415 3.746949 CTCCATGGCCACTCGCTCC 62.747 68.421 8.16 0.00 37.74 4.70
414 416 2.202987 CTCCATGGCCACTCGCTC 60.203 66.667 8.16 0.00 37.74 5.03
415 417 3.790437 CCTCCATGGCCACTCGCT 61.790 66.667 8.16 0.00 37.74 4.93
416 418 3.628646 AACCTCCATGGCCACTCGC 62.629 63.158 8.16 0.00 40.22 5.03
417 419 0.609131 AAAACCTCCATGGCCACTCG 60.609 55.000 8.16 0.00 40.22 4.18
418 420 2.507407 TAAAACCTCCATGGCCACTC 57.493 50.000 8.16 0.00 40.22 3.51
419 421 2.358195 GGATAAAACCTCCATGGCCACT 60.358 50.000 8.16 0.00 40.22 4.00
420 422 2.031870 GGATAAAACCTCCATGGCCAC 58.968 52.381 8.16 0.00 40.22 5.01
421 423 1.643286 TGGATAAAACCTCCATGGCCA 59.357 47.619 8.56 8.56 37.87 5.36
422 424 2.430694 GTTGGATAAAACCTCCATGGCC 59.569 50.000 6.96 0.00 42.26 5.36
423 425 3.096092 TGTTGGATAAAACCTCCATGGC 58.904 45.455 6.96 0.00 42.26 4.40
424 426 4.099881 CCATGTTGGATAAAACCTCCATGG 59.900 45.833 4.97 4.97 44.09 3.66
425 427 4.099881 CCCATGTTGGATAAAACCTCCATG 59.900 45.833 0.00 0.00 42.26 3.66
426 428 4.264804 ACCCATGTTGGATAAAACCTCCAT 60.265 41.667 0.00 0.00 42.26 3.41
427 429 3.076785 ACCCATGTTGGATAAAACCTCCA 59.923 43.478 0.00 0.00 40.96 3.86
428 430 3.447229 CACCCATGTTGGATAAAACCTCC 59.553 47.826 0.00 0.00 40.96 4.30
429 431 3.447229 CCACCCATGTTGGATAAAACCTC 59.553 47.826 4.84 0.00 40.96 3.85
430 432 3.440127 CCACCCATGTTGGATAAAACCT 58.560 45.455 4.84 0.00 40.96 3.50
431 433 2.093711 GCCACCCATGTTGGATAAAACC 60.094 50.000 13.59 0.00 40.96 3.27
432 434 2.564947 TGCCACCCATGTTGGATAAAAC 59.435 45.455 13.59 0.00 40.96 2.43
433 435 2.830923 CTGCCACCCATGTTGGATAAAA 59.169 45.455 13.59 0.00 40.96 1.52
434 436 2.455557 CTGCCACCCATGTTGGATAAA 58.544 47.619 13.59 0.00 40.96 1.40
435 437 1.959508 GCTGCCACCCATGTTGGATAA 60.960 52.381 13.59 0.00 40.96 1.75
436 438 0.395586 GCTGCCACCCATGTTGGATA 60.396 55.000 13.59 2.40 40.96 2.59
437 439 1.683365 GCTGCCACCCATGTTGGAT 60.683 57.895 13.59 0.00 40.96 3.41
438 440 2.283101 GCTGCCACCCATGTTGGA 60.283 61.111 13.59 0.37 40.96 3.53
439 441 0.683828 TATGCTGCCACCCATGTTGG 60.684 55.000 6.28 6.28 37.25 3.77
440 442 1.184431 TTATGCTGCCACCCATGTTG 58.816 50.000 0.00 0.00 0.00 3.33
441 443 2.034124 GATTATGCTGCCACCCATGTT 58.966 47.619 0.00 0.00 0.00 2.71
442 444 1.216175 AGATTATGCTGCCACCCATGT 59.784 47.619 0.00 0.00 0.00 3.21
443 445 1.991121 AGATTATGCTGCCACCCATG 58.009 50.000 0.00 0.00 0.00 3.66
444 446 2.442878 TGTAGATTATGCTGCCACCCAT 59.557 45.455 0.00 0.00 0.00 4.00
445 447 1.843206 TGTAGATTATGCTGCCACCCA 59.157 47.619 0.00 0.00 0.00 4.51
446 448 2.104792 TCTGTAGATTATGCTGCCACCC 59.895 50.000 0.00 0.00 0.00 4.61
447 449 3.475566 TCTGTAGATTATGCTGCCACC 57.524 47.619 0.00 0.00 0.00 4.61
448 450 3.677121 CGATCTGTAGATTATGCTGCCAC 59.323 47.826 0.00 0.00 34.37 5.01
449 451 3.306294 CCGATCTGTAGATTATGCTGCCA 60.306 47.826 0.00 0.00 34.37 4.92
450 452 3.257393 CCGATCTGTAGATTATGCTGCC 58.743 50.000 0.00 0.00 34.37 4.85
451 453 3.919216 ACCGATCTGTAGATTATGCTGC 58.081 45.455 0.00 0.00 34.37 5.25
452 454 4.021981 TGGACCGATCTGTAGATTATGCTG 60.022 45.833 0.00 0.00 34.37 4.41
453 455 4.021894 GTGGACCGATCTGTAGATTATGCT 60.022 45.833 0.00 0.00 34.37 3.79
454 456 4.238514 GTGGACCGATCTGTAGATTATGC 58.761 47.826 0.00 0.00 34.37 3.14
455 457 4.280929 TGGTGGACCGATCTGTAGATTATG 59.719 45.833 0.00 0.00 39.43 1.90
456 458 4.480115 TGGTGGACCGATCTGTAGATTAT 58.520 43.478 0.00 0.00 39.43 1.28
457 459 3.905968 TGGTGGACCGATCTGTAGATTA 58.094 45.455 0.00 0.00 39.43 1.75
458 460 2.747177 TGGTGGACCGATCTGTAGATT 58.253 47.619 0.00 0.00 39.43 2.40
459 461 2.454336 TGGTGGACCGATCTGTAGAT 57.546 50.000 0.00 0.00 39.43 1.98
460 462 2.091830 AGATGGTGGACCGATCTGTAGA 60.092 50.000 8.91 0.00 39.43 2.59
461 463 2.311463 AGATGGTGGACCGATCTGTAG 58.689 52.381 8.91 0.00 39.43 2.74
462 464 2.454336 AGATGGTGGACCGATCTGTA 57.546 50.000 8.91 0.00 39.43 2.74
463 465 1.482593 GAAGATGGTGGACCGATCTGT 59.517 52.381 9.94 0.00 39.43 3.41
464 466 1.759445 AGAAGATGGTGGACCGATCTG 59.241 52.381 9.94 0.00 39.43 2.90
465 467 2.166907 AGAAGATGGTGGACCGATCT 57.833 50.000 5.44 5.44 39.43 2.75
466 468 2.799917 CGAAGAAGATGGTGGACCGATC 60.800 54.545 0.00 0.00 39.43 3.69
467 469 1.137086 CGAAGAAGATGGTGGACCGAT 59.863 52.381 0.00 0.00 39.43 4.18
468 470 0.530744 CGAAGAAGATGGTGGACCGA 59.469 55.000 0.00 0.00 39.43 4.69
469 471 0.530744 TCGAAGAAGATGGTGGACCG 59.469 55.000 0.00 0.00 39.43 4.79
470 472 1.736032 CGTCGAAGAAGATGGTGGACC 60.736 57.143 0.00 0.00 38.59 4.46
471 473 1.067776 ACGTCGAAGAAGATGGTGGAC 60.068 52.381 5.05 0.00 38.59 4.02
472 474 1.254026 ACGTCGAAGAAGATGGTGGA 58.746 50.000 5.05 0.00 38.59 4.02
473 475 2.479730 CCTACGTCGAAGAAGATGGTGG 60.480 54.545 5.05 0.00 38.59 4.61
474 476 2.798680 CCTACGTCGAAGAAGATGGTG 58.201 52.381 5.05 0.00 38.59 4.17
475 477 1.134560 GCCTACGTCGAAGAAGATGGT 59.865 52.381 5.05 0.00 38.59 3.55
476 478 1.134367 TGCCTACGTCGAAGAAGATGG 59.866 52.381 5.05 1.02 38.59 3.51
477 479 2.561733 TGCCTACGTCGAAGAAGATG 57.438 50.000 5.05 0.00 38.59 2.90
478 480 3.884091 ACTATGCCTACGTCGAAGAAGAT 59.116 43.478 5.05 0.00 38.59 2.40
479 481 3.064958 CACTATGCCTACGTCGAAGAAGA 59.935 47.826 5.05 0.00 38.59 2.87
480 482 3.181499 ACACTATGCCTACGTCGAAGAAG 60.181 47.826 5.05 0.00 39.69 2.85
481 483 2.751259 ACACTATGCCTACGTCGAAGAA 59.249 45.455 5.05 0.00 39.69 2.52
482 484 2.353889 GACACTATGCCTACGTCGAAGA 59.646 50.000 5.05 0.00 0.00 2.87
483 485 2.717530 GACACTATGCCTACGTCGAAG 58.282 52.381 0.00 0.00 0.00 3.79
484 486 2.838386 GACACTATGCCTACGTCGAA 57.162 50.000 0.00 0.00 0.00 3.71
486 488 0.316772 CCGACACTATGCCTACGTCG 60.317 60.000 0.00 0.00 46.71 5.12
487 489 0.737219 ACCGACACTATGCCTACGTC 59.263 55.000 0.00 0.00 0.00 4.34
488 490 1.133790 GAACCGACACTATGCCTACGT 59.866 52.381 0.00 0.00 0.00 3.57
489 491 1.404391 AGAACCGACACTATGCCTACG 59.596 52.381 0.00 0.00 0.00 3.51
490 492 3.547613 CGTAGAACCGACACTATGCCTAC 60.548 52.174 0.00 0.00 0.00 3.18
491 493 2.615447 CGTAGAACCGACACTATGCCTA 59.385 50.000 0.00 0.00 0.00 3.93
492 494 1.404391 CGTAGAACCGACACTATGCCT 59.596 52.381 0.00 0.00 0.00 4.75
493 495 1.535437 CCGTAGAACCGACACTATGCC 60.535 57.143 0.00 0.00 0.00 4.40
494 496 1.535437 CCCGTAGAACCGACACTATGC 60.535 57.143 0.00 0.00 0.00 3.14
495 497 2.019249 TCCCGTAGAACCGACACTATG 58.981 52.381 0.00 0.00 0.00 2.23
496 498 2.019984 GTCCCGTAGAACCGACACTAT 58.980 52.381 0.00 0.00 0.00 2.12
497 499 1.003580 AGTCCCGTAGAACCGACACTA 59.996 52.381 0.00 0.00 0.00 2.74
498 500 0.251077 AGTCCCGTAGAACCGACACT 60.251 55.000 0.00 0.00 0.00 3.55
499 501 0.169894 GAGTCCCGTAGAACCGACAC 59.830 60.000 0.00 0.00 0.00 3.67
500 502 0.037303 AGAGTCCCGTAGAACCGACA 59.963 55.000 0.00 0.00 0.00 4.35
501 503 2.029838 TAGAGTCCCGTAGAACCGAC 57.970 55.000 0.00 0.00 0.00 4.79
502 504 2.947652 CAATAGAGTCCCGTAGAACCGA 59.052 50.000 0.00 0.00 0.00 4.69
503 505 2.686915 ACAATAGAGTCCCGTAGAACCG 59.313 50.000 0.00 0.00 0.00 4.44
504 506 4.430908 CAACAATAGAGTCCCGTAGAACC 58.569 47.826 0.00 0.00 0.00 3.62
505 507 3.864003 GCAACAATAGAGTCCCGTAGAAC 59.136 47.826 0.00 0.00 0.00 3.01
506 508 3.118884 GGCAACAATAGAGTCCCGTAGAA 60.119 47.826 0.00 0.00 0.00 2.10
507 509 2.429610 GGCAACAATAGAGTCCCGTAGA 59.570 50.000 0.00 0.00 0.00 2.59
508 510 2.483188 GGGCAACAATAGAGTCCCGTAG 60.483 54.545 0.00 0.00 39.74 3.51
509 511 1.483415 GGGCAACAATAGAGTCCCGTA 59.517 52.381 0.00 0.00 39.74 4.02
510 512 0.252197 GGGCAACAATAGAGTCCCGT 59.748 55.000 0.00 0.00 39.74 5.28
511 513 0.251916 TGGGCAACAATAGAGTCCCG 59.748 55.000 0.00 0.00 36.56 5.14
512 514 2.736670 ATGGGCAACAATAGAGTCCC 57.263 50.000 0.00 0.00 39.74 4.46
513 515 4.718961 ACATATGGGCAACAATAGAGTCC 58.281 43.478 7.80 0.00 39.74 3.85
514 516 4.449068 CGACATATGGGCAACAATAGAGTC 59.551 45.833 7.80 0.00 39.74 3.36
515 517 4.380531 CGACATATGGGCAACAATAGAGT 58.619 43.478 7.80 0.00 39.74 3.24
516 518 3.748048 CCGACATATGGGCAACAATAGAG 59.252 47.826 7.80 0.00 39.74 2.43
517 519 3.135712 ACCGACATATGGGCAACAATAGA 59.864 43.478 7.80 0.00 39.74 1.98
518 520 3.476552 ACCGACATATGGGCAACAATAG 58.523 45.455 7.80 0.00 39.74 1.73
519 521 3.569194 ACCGACATATGGGCAACAATA 57.431 42.857 7.80 0.00 39.74 1.90
520 522 2.435372 ACCGACATATGGGCAACAAT 57.565 45.000 7.80 0.00 39.74 2.71
521 523 2.208132 AACCGACATATGGGCAACAA 57.792 45.000 7.80 0.00 39.74 2.83
522 524 2.208132 AAACCGACATATGGGCAACA 57.792 45.000 7.80 0.00 39.74 3.33
523 525 3.586100 AAAAACCGACATATGGGCAAC 57.414 42.857 7.80 0.00 0.00 4.17
541 543 5.046950 ACACCAACAGCCTAACAAAGAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
542 544 4.464597 ACACCAACAGCCTAACAAAGAAAA 59.535 37.500 0.00 0.00 0.00 2.29
543 545 4.020543 ACACCAACAGCCTAACAAAGAAA 58.979 39.130 0.00 0.00 0.00 2.52
544 546 3.626930 ACACCAACAGCCTAACAAAGAA 58.373 40.909 0.00 0.00 0.00 2.52
545 547 3.290948 ACACCAACAGCCTAACAAAGA 57.709 42.857 0.00 0.00 0.00 2.52
546 548 4.111916 CAAACACCAACAGCCTAACAAAG 58.888 43.478 0.00 0.00 0.00 2.77
547 549 3.118956 CCAAACACCAACAGCCTAACAAA 60.119 43.478 0.00 0.00 0.00 2.83
548 550 2.428890 CCAAACACCAACAGCCTAACAA 59.571 45.455 0.00 0.00 0.00 2.83
549 551 2.028130 CCAAACACCAACAGCCTAACA 58.972 47.619 0.00 0.00 0.00 2.41
550 552 2.028876 ACCAAACACCAACAGCCTAAC 58.971 47.619 0.00 0.00 0.00 2.34
551 553 2.428890 CAACCAAACACCAACAGCCTAA 59.571 45.455 0.00 0.00 0.00 2.69
552 554 2.028130 CAACCAAACACCAACAGCCTA 58.972 47.619 0.00 0.00 0.00 3.93
553 555 0.823460 CAACCAAACACCAACAGCCT 59.177 50.000 0.00 0.00 0.00 4.58
554 556 0.534873 ACAACCAAACACCAACAGCC 59.465 50.000 0.00 0.00 0.00 4.85
555 557 1.067213 ACACAACCAAACACCAACAGC 60.067 47.619 0.00 0.00 0.00 4.40
556 558 2.605030 CACACAACCAAACACCAACAG 58.395 47.619 0.00 0.00 0.00 3.16
557 559 1.337260 GCACACAACCAAACACCAACA 60.337 47.619 0.00 0.00 0.00 3.33
558 560 1.337260 TGCACACAACCAAACACCAAC 60.337 47.619 0.00 0.00 0.00 3.77
559 561 0.969149 TGCACACAACCAAACACCAA 59.031 45.000 0.00 0.00 0.00 3.67
560 562 1.189752 ATGCACACAACCAAACACCA 58.810 45.000 0.00 0.00 0.00 4.17
561 563 2.307934 AATGCACACAACCAAACACC 57.692 45.000 0.00 0.00 0.00 4.16
562 564 4.867608 ACTAAAATGCACACAACCAAACAC 59.132 37.500 0.00 0.00 0.00 3.32
563 565 5.078411 ACTAAAATGCACACAACCAAACA 57.922 34.783 0.00 0.00 0.00 2.83
564 566 7.563270 CATAACTAAAATGCACACAACCAAAC 58.437 34.615 0.00 0.00 0.00 2.93
565 567 7.706281 CATAACTAAAATGCACACAACCAAA 57.294 32.000 0.00 0.00 0.00 3.28
577 579 7.066284 ACACTTAGCCTCTGCATAACTAAAATG 59.934 37.037 0.00 0.00 41.13 2.32
578 580 7.112779 ACACTTAGCCTCTGCATAACTAAAAT 58.887 34.615 0.00 0.00 41.13 1.82
579 581 6.472887 ACACTTAGCCTCTGCATAACTAAAA 58.527 36.000 0.00 0.00 41.13 1.52
580 582 6.049955 ACACTTAGCCTCTGCATAACTAAA 57.950 37.500 0.00 0.00 41.13 1.85
581 583 5.677319 ACACTTAGCCTCTGCATAACTAA 57.323 39.130 0.00 0.00 41.13 2.24
582 584 6.785337 TTACACTTAGCCTCTGCATAACTA 57.215 37.500 0.00 0.00 41.13 2.24
583 585 5.677319 TTACACTTAGCCTCTGCATAACT 57.323 39.130 0.00 0.00 41.13 2.24
584 586 6.927294 AATTACACTTAGCCTCTGCATAAC 57.073 37.500 0.00 0.00 41.13 1.89
585 587 6.884295 ACAAATTACACTTAGCCTCTGCATAA 59.116 34.615 0.00 0.00 41.13 1.90
586 588 6.414732 ACAAATTACACTTAGCCTCTGCATA 58.585 36.000 0.00 0.00 41.13 3.14
587 589 5.256474 ACAAATTACACTTAGCCTCTGCAT 58.744 37.500 0.00 0.00 41.13 3.96
588 590 4.651778 ACAAATTACACTTAGCCTCTGCA 58.348 39.130 0.00 0.00 41.13 4.41
589 591 4.695455 TGACAAATTACACTTAGCCTCTGC 59.305 41.667 0.00 0.00 37.95 4.26
590 592 6.372659 ACATGACAAATTACACTTAGCCTCTG 59.627 38.462 0.00 0.00 0.00 3.35
591 593 6.476378 ACATGACAAATTACACTTAGCCTCT 58.524 36.000 0.00 0.00 0.00 3.69
592 594 6.743575 ACATGACAAATTACACTTAGCCTC 57.256 37.500 0.00 0.00 0.00 4.70
593 595 7.524717 AAACATGACAAATTACACTTAGCCT 57.475 32.000 0.00 0.00 0.00 4.58
594 596 9.855021 ATAAAACATGACAAATTACACTTAGCC 57.145 29.630 0.00 0.00 0.00 3.93
607 609 9.241919 ACATCAAGTGGATATAAAACATGACAA 57.758 29.630 0.00 0.00 33.95 3.18
608 610 8.806429 ACATCAAGTGGATATAAAACATGACA 57.194 30.769 0.00 0.00 33.95 3.58
609 611 9.507280 CAACATCAAGTGGATATAAAACATGAC 57.493 33.333 0.00 0.00 33.95 3.06
610 612 8.190122 GCAACATCAAGTGGATATAAAACATGA 58.810 33.333 0.00 0.00 33.95 3.07
611 613 7.975058 TGCAACATCAAGTGGATATAAAACATG 59.025 33.333 0.00 0.00 33.95 3.21
612 614 8.065473 TGCAACATCAAGTGGATATAAAACAT 57.935 30.769 0.00 0.00 33.95 2.71
613 615 7.459795 TGCAACATCAAGTGGATATAAAACA 57.540 32.000 0.00 0.00 33.95 2.83
614 616 8.931385 AATGCAACATCAAGTGGATATAAAAC 57.069 30.769 0.00 0.00 33.95 2.43
615 617 8.970020 AGAATGCAACATCAAGTGGATATAAAA 58.030 29.630 0.00 0.00 33.95 1.52
616 618 8.523915 AGAATGCAACATCAAGTGGATATAAA 57.476 30.769 0.00 0.00 33.95 1.40
617 619 8.523915 AAGAATGCAACATCAAGTGGATATAA 57.476 30.769 0.00 0.00 33.95 0.98
618 620 9.276590 CTAAGAATGCAACATCAAGTGGATATA 57.723 33.333 0.00 0.00 33.95 0.86
619 621 7.776969 ACTAAGAATGCAACATCAAGTGGATAT 59.223 33.333 0.00 0.00 33.95 1.63
620 622 7.112122 ACTAAGAATGCAACATCAAGTGGATA 58.888 34.615 0.00 0.00 33.95 2.59
701 704 6.423905 CGTGACTTTAGTGAATTCTCCAAGAA 59.576 38.462 17.64 0.00 38.78 2.52
725 728 4.449068 CGTCCCTTTATTTCCATCAGATCG 59.551 45.833 0.00 0.00 0.00 3.69
747 750 1.202114 CCACCCATGTCAATCAAACCG 59.798 52.381 0.00 0.00 0.00 4.44
749 752 3.420893 TCTCCACCCATGTCAATCAAAC 58.579 45.455 0.00 0.00 0.00 2.93
759 762 6.364701 TCACCTAATTAAATCTCCACCCATG 58.635 40.000 0.00 0.00 0.00 3.66
798 895 6.148150 CGAGTAGGAATCAGATGTACTCCTAC 59.852 46.154 21.98 21.98 44.97 3.18
852 1283 2.676839 ACGACACGAGTACGAATCAGAT 59.323 45.455 10.54 0.00 42.66 2.90
868 1299 5.093457 GTCGATATGTCTTTCTGAACGACA 58.907 41.667 25.55 25.55 44.06 4.35
872 1303 6.586463 TGAACTGTCGATATGTCTTTCTGAAC 59.414 38.462 0.00 0.00 0.00 3.18
882 1313 5.066117 ACACGAGTATGAACTGTCGATATGT 59.934 40.000 0.00 0.00 35.56 2.29
925 1357 1.135431 TGTGTTTGTTGTGCAGACTGC 60.135 47.619 20.86 20.86 45.29 4.40
926 1358 2.917701 TGTGTTTGTTGTGCAGACTG 57.082 45.000 0.00 0.00 33.78 3.51
927 1359 2.819608 ACTTGTGTTTGTTGTGCAGACT 59.180 40.909 0.00 0.00 33.78 3.24
928 1360 2.916716 CACTTGTGTTTGTTGTGCAGAC 59.083 45.455 0.00 0.00 33.29 3.51
929 1361 2.556189 ACACTTGTGTTTGTTGTGCAGA 59.444 40.909 0.00 0.00 32.49 4.26
930 1362 2.662637 CACACTTGTGTTTGTTGTGCAG 59.337 45.455 3.39 0.00 40.96 4.41
931 1363 2.670479 CACACTTGTGTTTGTTGTGCA 58.330 42.857 3.39 0.00 40.96 4.57
949 1381 1.196808 ACGAACGAATCAACATGGCAC 59.803 47.619 0.00 0.00 0.00 5.01
950 1382 1.518325 ACGAACGAATCAACATGGCA 58.482 45.000 0.00 0.00 0.00 4.92
960 1392 0.792640 CTGCAGCTGAACGAACGAAT 59.207 50.000 20.43 0.00 0.00 3.34
964 1396 2.253758 TGGCTGCAGCTGAACGAAC 61.254 57.895 35.82 18.32 41.70 3.95
977 1409 0.250234 TGCCTAGTGCTTAGTGGCTG 59.750 55.000 0.00 0.00 43.57 4.85
985 1417 1.077212 CCATGGCTGCCTAGTGCTT 60.077 57.895 21.03 0.00 42.00 3.91
991 1423 1.456145 CCATTGCCATGGCTGCCTA 60.456 57.895 35.53 14.23 43.95 3.93
1017 1449 3.363844 GAGAGTCGTGGCAGGGCTC 62.364 68.421 28.96 28.96 0.00 4.70
1333 1780 0.607217 CTGACCATGCTGTTGAGCCA 60.607 55.000 0.00 0.00 45.57 4.75
1342 1789 2.581354 GTCGAGCCTGACCATGCT 59.419 61.111 0.00 0.00 41.42 3.79
1446 1893 2.338015 GGACCAGTACGGCGAGTGA 61.338 63.158 16.62 0.00 39.03 3.41
1470 1917 4.815973 AGCAGGCCCCCGATGGTA 62.816 66.667 0.00 0.00 0.00 3.25
1530 1977 1.268625 ACGACGTACTCATGAACAGCA 59.731 47.619 0.00 0.00 0.00 4.41
1539 1986 2.359107 AGCCCGACGACGTACTCA 60.359 61.111 0.00 0.00 37.88 3.41
1644 2091 3.999297 GAGGACGCCGAGGGAGACT 62.999 68.421 0.00 0.00 0.00 3.24
1665 2112 1.853114 GCGTGACCTGAGAGACGACA 61.853 60.000 0.00 0.00 33.64 4.35
1714 2163 2.811317 GCGCTCCAGGAACGTCAG 60.811 66.667 13.77 0.00 0.00 3.51
2340 2811 2.915738 AGTACGTGATGTCGAAGTCC 57.084 50.000 0.00 0.00 34.70 3.85
2355 2826 0.659957 CGGTGTAGCTCCGGTAGTAC 59.340 60.000 0.00 2.04 43.68 2.73
2799 3273 1.745489 GAAACGGCCGGCTCAGAAT 60.745 57.895 31.76 8.11 0.00 2.40
2803 3277 2.951475 AAAGTGAAACGGCCGGCTCA 62.951 55.000 31.76 26.75 45.86 4.26
2805 3279 2.203294 AAAGTGAAACGGCCGGCT 60.203 55.556 31.76 16.42 45.86 5.52
2823 3297 3.132160 CCAGCAGCTCATACAGATTCTG 58.868 50.000 12.17 12.17 37.52 3.02
2889 3582 5.511729 GCAAACGATGTATAAGGTTCAAAGC 59.488 40.000 0.00 0.00 0.00 3.51
2904 3597 4.218265 TCGAGTTGAAAATGCAAACGATG 58.782 39.130 0.00 0.00 35.56 3.84
2929 3622 3.372206 AGTTCGTTATCACAAGCATGAGC 59.628 43.478 0.00 0.00 42.56 4.26
2968 3661 2.261361 CCACCGTCGACAGCATCA 59.739 61.111 17.16 0.00 0.00 3.07
3001 3694 1.009829 CATGAGCTCCACCGCTTAAC 58.990 55.000 12.15 0.00 41.08 2.01
3129 4168 2.825205 TCACACATGCATACATCTCCG 58.175 47.619 0.00 0.00 32.87 4.63
3160 4199 6.435430 TCACAAGTTAACCATGCATACATC 57.565 37.500 0.00 0.00 32.87 3.06
3189 4228 9.911788 ATTCAAACAAGATACTTACATCTCCAT 57.088 29.630 0.00 0.00 34.08 3.41
3202 4241 7.701539 ACAACCATGCTATTCAAACAAGATA 57.298 32.000 0.00 0.00 0.00 1.98
3286 4329 4.224370 TCTGGGTAGTGTTATTTGGTCCTC 59.776 45.833 0.00 0.00 0.00 3.71
3330 4373 2.229062 TGTAAGTCGAGTGCTCCTGAAG 59.771 50.000 0.00 0.00 0.00 3.02
3345 4388 1.202710 TGCCACGTGTCCATTGTAAGT 60.203 47.619 15.65 0.00 0.00 2.24
3494 4537 1.348064 TTTCACCCACAGGAGACGAT 58.652 50.000 0.00 0.00 31.79 3.73
3503 4546 3.223435 TCGGCTTAATTTTTCACCCACA 58.777 40.909 0.00 0.00 0.00 4.17
3536 4579 0.790814 GTCAAGTGTCGCTGTTAGCC 59.209 55.000 0.00 0.00 38.18 3.93
3569 4612 3.005554 CCAAGGACAGTAGTGCATTCAG 58.994 50.000 0.00 0.00 38.75 3.02
3605 4648 5.109903 CCGCTATGTATCACTATTAAGCCC 58.890 45.833 0.00 0.00 0.00 5.19
3613 4656 3.087031 GGCCTACCGCTATGTATCACTA 58.913 50.000 0.00 0.00 37.74 2.74
3642 4685 1.933853 CTCGGCTTATTTTCAGACCCG 59.066 52.381 0.00 0.00 35.83 5.28
3659 4703 0.248539 GCTAGCGGAGGTGTTACTCG 60.249 60.000 0.00 0.00 40.22 4.18
3665 4709 1.296715 CAAAGGCTAGCGGAGGTGT 59.703 57.895 9.00 0.00 40.22 4.16
3689 4733 5.641709 ACATATAAGCCGAGATACATGACG 58.358 41.667 0.00 0.00 0.00 4.35
3690 4734 8.621921 CTTACATATAAGCCGAGATACATGAC 57.378 38.462 0.00 0.00 31.71 3.06
3704 4748 5.386958 TGGCTACTCGGCTTACATATAAG 57.613 43.478 0.00 0.00 40.83 1.73
3705 4749 5.537295 TCTTGGCTACTCGGCTTACATATAA 59.463 40.000 0.00 0.00 39.32 0.98
3706 4750 5.074804 TCTTGGCTACTCGGCTTACATATA 58.925 41.667 0.00 0.00 39.32 0.86
3707 4751 3.895656 TCTTGGCTACTCGGCTTACATAT 59.104 43.478 0.00 0.00 39.32 1.78
3708 4752 3.293337 TCTTGGCTACTCGGCTTACATA 58.707 45.455 0.00 0.00 39.32 2.29
3709 4753 2.108168 TCTTGGCTACTCGGCTTACAT 58.892 47.619 0.00 0.00 39.32 2.29
3710 4754 1.552578 TCTTGGCTACTCGGCTTACA 58.447 50.000 0.00 0.00 39.32 2.41
3711 4755 2.667473 TTCTTGGCTACTCGGCTTAC 57.333 50.000 0.00 0.00 39.32 2.34
3712 4756 2.300723 TGTTTCTTGGCTACTCGGCTTA 59.699 45.455 0.00 0.00 39.32 3.09
3713 4757 1.071699 TGTTTCTTGGCTACTCGGCTT 59.928 47.619 0.00 0.00 39.32 4.35
3714 4758 0.685097 TGTTTCTTGGCTACTCGGCT 59.315 50.000 0.00 0.00 39.32 5.52
3715 4759 1.197036 GTTGTTTCTTGGCTACTCGGC 59.803 52.381 0.00 0.00 38.97 5.54
3716 4760 2.223377 GTGTTGTTTCTTGGCTACTCGG 59.777 50.000 0.00 0.00 0.00 4.63
3717 4761 3.131396 AGTGTTGTTTCTTGGCTACTCG 58.869 45.455 0.00 0.00 0.00 4.18
3718 4762 3.184581 CGAGTGTTGTTTCTTGGCTACTC 59.815 47.826 0.00 0.00 0.00 2.59
3719 4763 3.131396 CGAGTGTTGTTTCTTGGCTACT 58.869 45.455 0.00 0.00 0.00 2.57
3720 4764 2.870411 ACGAGTGTTGTTTCTTGGCTAC 59.130 45.455 0.00 0.00 0.00 3.58
3721 4765 3.128349 GACGAGTGTTGTTTCTTGGCTA 58.872 45.455 0.00 0.00 0.00 3.93
3722 4766 1.940613 GACGAGTGTTGTTTCTTGGCT 59.059 47.619 0.00 0.00 0.00 4.75
3723 4767 1.940613 AGACGAGTGTTGTTTCTTGGC 59.059 47.619 0.00 0.00 0.00 4.52
3724 4768 4.569162 TGTAAGACGAGTGTTGTTTCTTGG 59.431 41.667 0.00 0.00 0.00 3.61
3725 4769 5.490213 GTGTAAGACGAGTGTTGTTTCTTG 58.510 41.667 0.00 0.00 0.00 3.02
3726 4770 5.713822 GTGTAAGACGAGTGTTGTTTCTT 57.286 39.130 0.00 0.00 0.00 2.52
3750 4794 6.366877 TCGACTTTATTTATACCGGCTTATGC 59.633 38.462 0.00 0.00 38.76 3.14
3751 4795 7.811236 TCTCGACTTTATTTATACCGGCTTATG 59.189 37.037 0.00 0.00 0.00 1.90
3752 4796 7.889469 TCTCGACTTTATTTATACCGGCTTAT 58.111 34.615 0.00 0.00 0.00 1.73
3753 4797 7.275888 TCTCGACTTTATTTATACCGGCTTA 57.724 36.000 0.00 0.00 0.00 3.09
3754 4798 6.152932 TCTCGACTTTATTTATACCGGCTT 57.847 37.500 0.00 0.00 0.00 4.35
3755 4799 5.770417 CTCTCGACTTTATTTATACCGGCT 58.230 41.667 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.