Multiple sequence alignment - TraesCS2D01G036900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G036900 chr2D 100.000 3092 0 0 1 3092 13769197 13772288 0.000000e+00 5710.0
1 TraesCS2D01G036900 chr2D 92.388 289 22 0 270 558 89336346 89336634 2.220000e-111 412.0
2 TraesCS2D01G036900 chr2D 92.308 286 22 0 273 558 529399029 529398744 1.030000e-109 407.0
3 TraesCS2D01G036900 chr2D 92.042 289 22 1 270 558 112229157 112229444 3.710000e-109 405.0
4 TraesCS2D01G036900 chr2D 91.958 286 23 0 273 558 133315204 133314919 4.800000e-108 401.0
5 TraesCS2D01G036900 chr2A 92.563 2528 129 21 601 3092 15959365 15961869 0.000000e+00 3572.0
6 TraesCS2D01G036900 chr2A 86.360 1129 101 23 999 2099 15756437 15757540 0.000000e+00 1182.0
7 TraesCS2D01G036900 chr2A 94.828 58 3 0 177 234 15959189 15959246 1.180000e-14 91.6
8 TraesCS2D01G036900 chr2B 91.675 2078 107 12 1022 3092 25069196 25071214 0.000000e+00 2819.0
9 TraesCS2D01G036900 chr2B 87.574 169 19 2 4 172 25029918 25030084 8.750000e-46 195.0
10 TraesCS2D01G036900 chr2B 81.132 265 22 14 753 994 25068942 25069201 1.460000e-43 187.0
11 TraesCS2D01G036900 chr3A 82.810 1082 149 20 1034 2098 663441779 663440718 0.000000e+00 933.0
12 TraesCS2D01G036900 chr3B 82.823 1077 146 21 1034 2094 700073302 700072249 0.000000e+00 928.0
13 TraesCS2D01G036900 chr3B 81.886 1071 156 25 1034 2090 700234855 700235901 0.000000e+00 869.0
14 TraesCS2D01G036900 chr3D 82.625 1082 151 20 1034 2098 529496477 529495416 0.000000e+00 922.0
15 TraesCS2D01G036900 chr3D 91.696 289 24 0 270 558 336327277 336327565 4.800000e-108 401.0
16 TraesCS2D01G036900 chr7D 82.385 1090 142 29 1039 2094 48824874 48823801 0.000000e+00 904.0
17 TraesCS2D01G036900 chr7A 82.206 1079 155 27 1039 2094 51662487 51661423 0.000000e+00 894.0
18 TraesCS2D01G036900 chr4A 81.725 1078 159 27 1039 2093 663696114 663695052 0.000000e+00 865.0
19 TraesCS2D01G036900 chr5D 78.532 913 148 30 1033 1927 557577270 557578152 9.690000e-155 556.0
20 TraesCS2D01G036900 chr1D 93.007 286 20 0 273 558 83065006 83064721 4.770000e-113 418.0
21 TraesCS2D01G036900 chr4D 92.042 289 23 0 270 558 57816324 57816612 1.030000e-109 407.0
22 TraesCS2D01G036900 chr4D 92.308 286 22 0 273 558 185353291 185353006 1.030000e-109 407.0
23 TraesCS2D01G036900 chr4D 92.308 286 22 0 273 558 275890903 275890618 1.030000e-109 407.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G036900 chr2D 13769197 13772288 3091 False 5710.0 5710 100.0000 1 3092 1 chr2D.!!$F1 3091
1 TraesCS2D01G036900 chr2A 15959189 15961869 2680 False 1831.8 3572 93.6955 177 3092 2 chr2A.!!$F2 2915
2 TraesCS2D01G036900 chr2A 15756437 15757540 1103 False 1182.0 1182 86.3600 999 2099 1 chr2A.!!$F1 1100
3 TraesCS2D01G036900 chr2B 25068942 25071214 2272 False 1503.0 2819 86.4035 753 3092 2 chr2B.!!$F2 2339
4 TraesCS2D01G036900 chr3A 663440718 663441779 1061 True 933.0 933 82.8100 1034 2098 1 chr3A.!!$R1 1064
5 TraesCS2D01G036900 chr3B 700072249 700073302 1053 True 928.0 928 82.8230 1034 2094 1 chr3B.!!$R1 1060
6 TraesCS2D01G036900 chr3B 700234855 700235901 1046 False 869.0 869 81.8860 1034 2090 1 chr3B.!!$F1 1056
7 TraesCS2D01G036900 chr3D 529495416 529496477 1061 True 922.0 922 82.6250 1034 2098 1 chr3D.!!$R1 1064
8 TraesCS2D01G036900 chr7D 48823801 48824874 1073 True 904.0 904 82.3850 1039 2094 1 chr7D.!!$R1 1055
9 TraesCS2D01G036900 chr7A 51661423 51662487 1064 True 894.0 894 82.2060 1039 2094 1 chr7A.!!$R1 1055
10 TraesCS2D01G036900 chr4A 663695052 663696114 1062 True 865.0 865 81.7250 1039 2093 1 chr4A.!!$R1 1054
11 TraesCS2D01G036900 chr5D 557577270 557578152 882 False 556.0 556 78.5320 1033 1927 1 chr5D.!!$F1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.038310 GTTTAGCCCTGGTGCTTCCT 59.962 55.0 13.65 0.0 42.75 3.36 F
131 132 0.109226 GGCGTAGACGATATGAGGGC 60.109 60.0 6.19 0.0 43.02 5.19 F
147 148 0.109226 GGGCTATAGGATCACGACGC 60.109 60.0 1.04 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1499 0.824759 GGTCGAGGTTGCTCTGGTAT 59.175 55.000 0.00 0.00 0.0 2.73 R
1450 1560 2.202987 CTCCGGCAGCATCTCCAC 60.203 66.667 0.00 0.00 0.0 4.02 R
2158 2322 3.598019 TCAAAATTCAGAAGGCATGGC 57.402 42.857 12.14 12.14 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.443958 GGGGCTCCAGCTTAATTTCT 57.556 50.000 0.00 0.00 41.70 2.52
20 21 2.739943 GGGGCTCCAGCTTAATTTCTT 58.260 47.619 0.00 0.00 41.70 2.52
21 22 2.690497 GGGGCTCCAGCTTAATTTCTTC 59.310 50.000 0.00 0.00 41.70 2.87
22 23 3.625853 GGGCTCCAGCTTAATTTCTTCT 58.374 45.455 0.00 0.00 41.70 2.85
23 24 3.629855 GGGCTCCAGCTTAATTTCTTCTC 59.370 47.826 0.00 0.00 41.70 2.87
24 25 4.522114 GGCTCCAGCTTAATTTCTTCTCT 58.478 43.478 0.00 0.00 41.70 3.10
25 26 5.396884 GGGCTCCAGCTTAATTTCTTCTCTA 60.397 44.000 0.00 0.00 41.70 2.43
26 27 5.525745 GGCTCCAGCTTAATTTCTTCTCTAC 59.474 44.000 0.00 0.00 41.70 2.59
27 28 5.525745 GCTCCAGCTTAATTTCTTCTCTACC 59.474 44.000 0.00 0.00 38.21 3.18
28 29 6.620877 TCCAGCTTAATTTCTTCTCTACCA 57.379 37.500 0.00 0.00 0.00 3.25
29 30 7.016153 TCCAGCTTAATTTCTTCTCTACCAA 57.984 36.000 0.00 0.00 0.00 3.67
30 31 7.633789 TCCAGCTTAATTTCTTCTCTACCAAT 58.366 34.615 0.00 0.00 0.00 3.16
31 32 8.109634 TCCAGCTTAATTTCTTCTCTACCAATT 58.890 33.333 0.00 0.00 0.00 2.32
32 33 8.743714 CCAGCTTAATTTCTTCTCTACCAATTT 58.256 33.333 0.00 0.00 0.00 1.82
33 34 9.565213 CAGCTTAATTTCTTCTCTACCAATTTG 57.435 33.333 0.00 0.00 0.00 2.32
34 35 8.246871 AGCTTAATTTCTTCTCTACCAATTTGC 58.753 33.333 0.00 0.00 0.00 3.68
35 36 8.028938 GCTTAATTTCTTCTCTACCAATTTGCA 58.971 33.333 0.00 0.00 0.00 4.08
36 37 9.346725 CTTAATTTCTTCTCTACCAATTTGCAC 57.653 33.333 0.00 0.00 0.00 4.57
37 38 6.899393 ATTTCTTCTCTACCAATTTGCACA 57.101 33.333 0.00 0.00 0.00 4.57
38 39 5.689383 TTCTTCTCTACCAATTTGCACAC 57.311 39.130 0.00 0.00 0.00 3.82
39 40 3.745975 TCTTCTCTACCAATTTGCACACG 59.254 43.478 0.00 0.00 0.00 4.49
40 41 2.422597 TCTCTACCAATTTGCACACGG 58.577 47.619 0.00 0.00 0.00 4.94
41 42 0.878416 TCTACCAATTTGCACACGGC 59.122 50.000 0.00 0.00 45.13 5.68
50 51 4.226803 GCACACGGCATGTTGTTC 57.773 55.556 0.00 0.00 40.64 3.18
51 52 1.371635 GCACACGGCATGTTGTTCC 60.372 57.895 0.00 0.00 40.64 3.62
52 53 1.795170 GCACACGGCATGTTGTTCCT 61.795 55.000 0.00 0.00 40.64 3.36
53 54 0.667993 CACACGGCATGTTGTTCCTT 59.332 50.000 0.00 0.00 40.64 3.36
54 55 1.066908 CACACGGCATGTTGTTCCTTT 59.933 47.619 0.00 0.00 40.64 3.11
55 56 1.336755 ACACGGCATGTTGTTCCTTTC 59.663 47.619 0.00 0.00 38.98 2.62
56 57 0.591170 ACGGCATGTTGTTCCTTTCG 59.409 50.000 0.00 0.00 0.00 3.46
57 58 0.729140 CGGCATGTTGTTCCTTTCGC 60.729 55.000 0.00 0.00 0.00 4.70
58 59 0.313672 GGCATGTTGTTCCTTTCGCA 59.686 50.000 0.00 0.00 0.00 5.10
59 60 1.067635 GGCATGTTGTTCCTTTCGCAT 60.068 47.619 0.00 0.00 0.00 4.73
60 61 1.987770 GCATGTTGTTCCTTTCGCATG 59.012 47.619 0.00 0.00 37.39 4.06
61 62 2.351641 GCATGTTGTTCCTTTCGCATGA 60.352 45.455 0.00 0.00 36.71 3.07
62 63 3.674138 GCATGTTGTTCCTTTCGCATGAT 60.674 43.478 0.00 0.00 36.71 2.45
63 64 3.557577 TGTTGTTCCTTTCGCATGATG 57.442 42.857 0.00 0.00 0.00 3.07
64 65 2.253603 GTTGTTCCTTTCGCATGATGC 58.746 47.619 7.49 7.49 40.69 3.91
65 66 1.532523 TGTTCCTTTCGCATGATGCA 58.467 45.000 18.47 1.76 45.36 3.96
66 67 2.093890 TGTTCCTTTCGCATGATGCAT 58.906 42.857 18.47 0.00 45.36 3.96
67 68 2.097954 TGTTCCTTTCGCATGATGCATC 59.902 45.455 20.14 20.14 45.36 3.91
68 69 2.336945 TCCTTTCGCATGATGCATCT 57.663 45.000 26.32 10.21 45.36 2.90
69 70 2.216046 TCCTTTCGCATGATGCATCTC 58.784 47.619 26.32 14.48 45.36 2.75
70 71 2.158856 TCCTTTCGCATGATGCATCTCT 60.159 45.455 26.32 11.89 45.36 3.10
71 72 2.223611 CCTTTCGCATGATGCATCTCTC 59.776 50.000 26.32 13.84 45.36 3.20
72 73 2.607631 TTCGCATGATGCATCTCTCA 57.392 45.000 26.32 9.28 45.36 3.27
73 74 2.833631 TCGCATGATGCATCTCTCAT 57.166 45.000 26.32 11.32 45.36 2.90
74 75 2.413837 TCGCATGATGCATCTCTCATG 58.586 47.619 26.32 22.45 45.36 3.07
91 92 2.359975 GCGTTTAGCCCTGGTGCT 60.360 61.111 13.10 13.10 45.38 4.40
92 93 1.971695 GCGTTTAGCCCTGGTGCTT 60.972 57.895 13.65 1.23 42.75 3.91
93 94 1.923227 GCGTTTAGCCCTGGTGCTTC 61.923 60.000 13.65 6.04 42.75 3.86
94 95 1.305930 CGTTTAGCCCTGGTGCTTCC 61.306 60.000 13.65 3.72 42.75 3.46
95 96 0.038310 GTTTAGCCCTGGTGCTTCCT 59.962 55.000 13.65 0.00 42.75 3.36
96 97 0.328258 TTTAGCCCTGGTGCTTCCTC 59.672 55.000 13.65 0.00 42.75 3.71
97 98 0.547712 TTAGCCCTGGTGCTTCCTCT 60.548 55.000 13.65 0.00 42.75 3.69
98 99 0.978146 TAGCCCTGGTGCTTCCTCTC 60.978 60.000 13.65 0.00 42.75 3.20
99 100 2.581354 CCCTGGTGCTTCCTCTCG 59.419 66.667 0.00 0.00 37.07 4.04
100 101 1.984570 CCCTGGTGCTTCCTCTCGA 60.985 63.158 0.00 0.00 37.07 4.04
101 102 1.544825 CCCTGGTGCTTCCTCTCGAA 61.545 60.000 0.00 0.00 37.07 3.71
102 103 0.390472 CCTGGTGCTTCCTCTCGAAC 60.390 60.000 0.00 0.00 37.07 3.95
103 104 0.390472 CTGGTGCTTCCTCTCGAACC 60.390 60.000 0.00 0.00 37.07 3.62
104 105 1.118965 TGGTGCTTCCTCTCGAACCA 61.119 55.000 0.00 0.00 37.07 3.67
105 106 0.390472 GGTGCTTCCTCTCGAACCAG 60.390 60.000 0.00 0.00 0.00 4.00
106 107 0.390472 GTGCTTCCTCTCGAACCAGG 60.390 60.000 0.00 0.00 0.00 4.45
107 108 1.448717 GCTTCCTCTCGAACCAGGC 60.449 63.158 0.61 0.00 0.00 4.85
108 109 1.893919 GCTTCCTCTCGAACCAGGCT 61.894 60.000 0.61 0.00 0.00 4.58
109 110 1.475403 CTTCCTCTCGAACCAGGCTA 58.525 55.000 0.00 0.00 0.00 3.93
110 111 1.407258 CTTCCTCTCGAACCAGGCTAG 59.593 57.143 0.00 0.00 0.00 3.42
111 112 0.331954 TCCTCTCGAACCAGGCTAGT 59.668 55.000 0.00 0.00 0.00 2.57
112 113 0.457851 CCTCTCGAACCAGGCTAGTG 59.542 60.000 0.00 0.00 0.00 2.74
113 114 0.457851 CTCTCGAACCAGGCTAGTGG 59.542 60.000 0.00 0.00 44.01 4.00
114 115 1.153549 CTCGAACCAGGCTAGTGGC 60.154 63.158 0.00 0.00 41.90 5.01
115 116 2.509336 CGAACCAGGCTAGTGGCG 60.509 66.667 0.00 0.00 41.90 5.69
116 117 2.663196 GAACCAGGCTAGTGGCGT 59.337 61.111 0.00 0.00 41.90 5.68
117 118 1.895238 GAACCAGGCTAGTGGCGTA 59.105 57.895 0.00 0.00 41.90 4.42
118 119 0.179108 GAACCAGGCTAGTGGCGTAG 60.179 60.000 0.00 0.00 41.90 3.51
119 120 0.613853 AACCAGGCTAGTGGCGTAGA 60.614 55.000 0.00 0.00 41.90 2.59
120 121 1.321074 ACCAGGCTAGTGGCGTAGAC 61.321 60.000 0.00 0.00 41.90 2.59
121 122 1.064296 CAGGCTAGTGGCGTAGACG 59.936 63.158 0.00 0.00 41.59 4.18
122 123 1.077930 AGGCTAGTGGCGTAGACGA 60.078 57.895 6.19 0.00 41.59 4.20
123 124 0.465824 AGGCTAGTGGCGTAGACGAT 60.466 55.000 6.19 0.00 41.59 3.73
124 125 1.202734 AGGCTAGTGGCGTAGACGATA 60.203 52.381 6.19 0.00 41.59 2.92
125 126 1.811359 GGCTAGTGGCGTAGACGATAT 59.189 52.381 6.19 0.00 41.59 1.63
126 127 2.414293 GGCTAGTGGCGTAGACGATATG 60.414 54.545 6.19 0.00 41.59 1.78
127 128 2.483106 GCTAGTGGCGTAGACGATATGA 59.517 50.000 6.19 0.00 41.59 2.15
128 129 3.425094 GCTAGTGGCGTAGACGATATGAG 60.425 52.174 6.19 0.00 41.59 2.90
129 130 1.880675 AGTGGCGTAGACGATATGAGG 59.119 52.381 6.19 0.00 41.59 3.86
130 131 1.068472 GTGGCGTAGACGATATGAGGG 60.068 57.143 6.19 0.00 41.59 4.30
131 132 0.109226 GGCGTAGACGATATGAGGGC 60.109 60.000 6.19 0.00 43.02 5.19
132 133 0.882474 GCGTAGACGATATGAGGGCT 59.118 55.000 6.19 0.00 43.02 5.19
133 134 2.082231 GCGTAGACGATATGAGGGCTA 58.918 52.381 6.19 0.00 43.02 3.93
134 135 2.683867 GCGTAGACGATATGAGGGCTAT 59.316 50.000 6.19 0.00 43.02 2.97
135 136 3.875727 GCGTAGACGATATGAGGGCTATA 59.124 47.826 6.19 0.00 43.02 1.31
136 137 4.024725 GCGTAGACGATATGAGGGCTATAG 60.025 50.000 6.19 0.00 43.02 1.31
137 138 4.512198 CGTAGACGATATGAGGGCTATAGG 59.488 50.000 1.04 0.00 43.02 2.57
138 139 4.864483 AGACGATATGAGGGCTATAGGA 57.136 45.455 1.04 0.00 0.00 2.94
139 140 5.396057 AGACGATATGAGGGCTATAGGAT 57.604 43.478 1.04 0.00 0.00 3.24
140 141 5.381757 AGACGATATGAGGGCTATAGGATC 58.618 45.833 1.04 0.00 0.00 3.36
141 142 5.103898 AGACGATATGAGGGCTATAGGATCA 60.104 44.000 1.04 0.00 0.00 2.92
142 143 4.890581 ACGATATGAGGGCTATAGGATCAC 59.109 45.833 1.04 0.00 0.00 3.06
143 144 4.023622 CGATATGAGGGCTATAGGATCACG 60.024 50.000 1.04 0.00 0.00 4.35
144 145 2.971901 TGAGGGCTATAGGATCACGA 57.028 50.000 1.04 0.00 0.00 4.35
145 146 2.515854 TGAGGGCTATAGGATCACGAC 58.484 52.381 1.04 0.00 0.00 4.34
146 147 1.469308 GAGGGCTATAGGATCACGACG 59.531 57.143 1.04 0.00 0.00 5.12
147 148 0.109226 GGGCTATAGGATCACGACGC 60.109 60.000 1.04 0.00 0.00 5.19
148 149 0.454620 GGCTATAGGATCACGACGCG 60.455 60.000 3.53 3.53 0.00 6.01
149 150 0.237761 GCTATAGGATCACGACGCGT 59.762 55.000 13.85 13.85 42.36 6.01
158 159 3.767301 ACGACGCGTGTCATGATG 58.233 55.556 27.16 13.71 45.80 3.07
159 160 1.080772 ACGACGCGTGTCATGATGT 60.081 52.632 27.16 14.34 45.80 3.06
160 161 1.071019 ACGACGCGTGTCATGATGTC 61.071 55.000 27.16 0.00 45.80 3.06
161 162 1.625870 GACGCGTGTCATGATGTCG 59.374 57.895 20.70 5.76 44.82 4.35
162 163 1.071019 GACGCGTGTCATGATGTCGT 61.071 55.000 20.70 12.67 44.82 4.34
163 164 1.341467 CGCGTGTCATGATGTCGTG 59.659 57.895 0.00 7.43 0.00 4.35
164 165 1.344226 CGCGTGTCATGATGTCGTGT 61.344 55.000 16.58 0.00 34.59 4.49
165 166 0.366871 GCGTGTCATGATGTCGTGTC 59.633 55.000 0.00 0.00 34.59 3.67
166 167 1.982612 CGTGTCATGATGTCGTGTCT 58.017 50.000 0.00 0.00 34.59 3.41
167 168 2.328473 CGTGTCATGATGTCGTGTCTT 58.672 47.619 0.00 0.00 34.59 3.01
168 169 2.342651 CGTGTCATGATGTCGTGTCTTC 59.657 50.000 0.00 0.00 34.59 2.87
169 170 3.579709 GTGTCATGATGTCGTGTCTTCT 58.420 45.455 0.00 0.00 34.59 2.85
170 171 3.990469 GTGTCATGATGTCGTGTCTTCTT 59.010 43.478 0.00 0.00 34.59 2.52
171 172 4.449068 GTGTCATGATGTCGTGTCTTCTTT 59.551 41.667 0.00 0.00 34.59 2.52
172 173 5.633601 GTGTCATGATGTCGTGTCTTCTTTA 59.366 40.000 0.00 0.00 34.59 1.85
173 174 6.311445 GTGTCATGATGTCGTGTCTTCTTTAT 59.689 38.462 0.00 0.00 34.59 1.40
174 175 6.873605 TGTCATGATGTCGTGTCTTCTTTATT 59.126 34.615 0.00 0.00 34.59 1.40
175 176 8.032451 TGTCATGATGTCGTGTCTTCTTTATTA 58.968 33.333 0.00 0.00 34.59 0.98
221 222 4.504858 AGTCAACAAGTTCGACTCAAGTT 58.495 39.130 10.27 0.00 35.02 2.66
255 276 4.194121 CGAGTTTCGAGTTTTCGTTTCAG 58.806 43.478 0.00 0.00 46.72 3.02
261 282 0.179040 AGTTTTCGTTTCAGCCCCGA 60.179 50.000 0.00 0.00 0.00 5.14
269 290 2.731691 TTTCAGCCCCGACTGTGCTC 62.732 60.000 0.00 0.00 38.84 4.26
270 291 3.699894 CAGCCCCGACTGTGCTCT 61.700 66.667 0.00 0.00 31.77 4.09
271 292 2.037367 AGCCCCGACTGTGCTCTA 59.963 61.111 0.00 0.00 0.00 2.43
272 293 1.609501 AGCCCCGACTGTGCTCTAA 60.610 57.895 0.00 0.00 0.00 2.10
273 294 1.153549 GCCCCGACTGTGCTCTAAG 60.154 63.158 0.00 0.00 0.00 2.18
274 295 1.605058 GCCCCGACTGTGCTCTAAGA 61.605 60.000 0.00 0.00 0.00 2.10
275 296 0.457851 CCCCGACTGTGCTCTAAGAG 59.542 60.000 0.00 0.00 0.00 2.85
293 314 9.973450 CTCTAAGAGCAAATATAGTAAAGCTGA 57.027 33.333 0.00 0.00 31.61 4.26
294 315 9.973450 TCTAAGAGCAAATATAGTAAAGCTGAG 57.027 33.333 0.00 0.00 31.61 3.35
295 316 9.757227 CTAAGAGCAAATATAGTAAAGCTGAGT 57.243 33.333 0.00 0.00 31.61 3.41
296 317 8.655651 AAGAGCAAATATAGTAAAGCTGAGTC 57.344 34.615 0.00 0.00 31.61 3.36
297 318 7.786030 AGAGCAAATATAGTAAAGCTGAGTCA 58.214 34.615 0.00 0.00 31.61 3.41
298 319 7.925483 AGAGCAAATATAGTAAAGCTGAGTCAG 59.075 37.037 16.21 16.21 31.61 3.51
309 330 2.430546 CTGAGTCAGCGGGCTATAAG 57.569 55.000 7.33 0.00 0.00 1.73
310 331 1.000283 CTGAGTCAGCGGGCTATAAGG 60.000 57.143 7.33 0.00 0.00 2.69
311 332 1.329256 GAGTCAGCGGGCTATAAGGA 58.671 55.000 0.00 0.00 0.00 3.36
312 333 1.687123 GAGTCAGCGGGCTATAAGGAA 59.313 52.381 0.00 0.00 0.00 3.36
313 334 2.300437 GAGTCAGCGGGCTATAAGGAAT 59.700 50.000 0.00 0.00 0.00 3.01
314 335 3.507411 AGTCAGCGGGCTATAAGGAATA 58.493 45.455 0.00 0.00 0.00 1.75
315 336 3.901844 AGTCAGCGGGCTATAAGGAATAA 59.098 43.478 0.00 0.00 0.00 1.40
316 337 4.347000 AGTCAGCGGGCTATAAGGAATAAA 59.653 41.667 0.00 0.00 0.00 1.40
317 338 4.451435 GTCAGCGGGCTATAAGGAATAAAC 59.549 45.833 0.00 0.00 0.00 2.01
318 339 4.347000 TCAGCGGGCTATAAGGAATAAACT 59.653 41.667 0.00 0.00 0.00 2.66
319 340 5.541101 TCAGCGGGCTATAAGGAATAAACTA 59.459 40.000 0.00 0.00 0.00 2.24
320 341 5.869888 CAGCGGGCTATAAGGAATAAACTAG 59.130 44.000 0.00 0.00 0.00 2.57
321 342 5.543020 AGCGGGCTATAAGGAATAAACTAGT 59.457 40.000 0.00 0.00 0.00 2.57
322 343 6.723052 AGCGGGCTATAAGGAATAAACTAGTA 59.277 38.462 0.00 0.00 0.00 1.82
323 344 7.399478 AGCGGGCTATAAGGAATAAACTAGTAT 59.601 37.037 0.00 0.00 0.00 2.12
324 345 8.689972 GCGGGCTATAAGGAATAAACTAGTATA 58.310 37.037 0.00 0.00 0.00 1.47
350 371 8.994429 TTCATGTTTAGTTGAAGCAAAAAGAA 57.006 26.923 0.00 0.00 31.40 2.52
351 372 8.633075 TCATGTTTAGTTGAAGCAAAAAGAAG 57.367 30.769 0.00 0.00 31.40 2.85
352 373 7.706179 TCATGTTTAGTTGAAGCAAAAAGAAGG 59.294 33.333 0.00 0.00 31.40 3.46
353 374 6.337356 TGTTTAGTTGAAGCAAAAAGAAGGG 58.663 36.000 0.00 0.00 0.00 3.95
354 375 5.529581 TTAGTTGAAGCAAAAAGAAGGGG 57.470 39.130 0.00 0.00 0.00 4.79
355 376 3.642141 AGTTGAAGCAAAAAGAAGGGGA 58.358 40.909 0.00 0.00 0.00 4.81
356 377 3.638627 AGTTGAAGCAAAAAGAAGGGGAG 59.361 43.478 0.00 0.00 0.00 4.30
357 378 3.593442 TGAAGCAAAAAGAAGGGGAGA 57.407 42.857 0.00 0.00 0.00 3.71
358 379 3.490348 TGAAGCAAAAAGAAGGGGAGAG 58.510 45.455 0.00 0.00 0.00 3.20
359 380 3.138283 TGAAGCAAAAAGAAGGGGAGAGA 59.862 43.478 0.00 0.00 0.00 3.10
360 381 3.884037 AGCAAAAAGAAGGGGAGAGAA 57.116 42.857 0.00 0.00 0.00 2.87
361 382 4.184649 AGCAAAAAGAAGGGGAGAGAAA 57.815 40.909 0.00 0.00 0.00 2.52
362 383 4.546674 AGCAAAAAGAAGGGGAGAGAAAA 58.453 39.130 0.00 0.00 0.00 2.29
363 384 4.586421 AGCAAAAAGAAGGGGAGAGAAAAG 59.414 41.667 0.00 0.00 0.00 2.27
364 385 4.262207 GCAAAAAGAAGGGGAGAGAAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
365 386 4.816048 AAAAGAAGGGGAGAGAAAAGGT 57.184 40.909 0.00 0.00 0.00 3.50
366 387 5.924769 AAAAGAAGGGGAGAGAAAAGGTA 57.075 39.130 0.00 0.00 0.00 3.08
367 388 5.924769 AAAGAAGGGGAGAGAAAAGGTAA 57.075 39.130 0.00 0.00 0.00 2.85
368 389 5.506730 AAGAAGGGGAGAGAAAAGGTAAG 57.493 43.478 0.00 0.00 0.00 2.34
369 390 3.264706 AGAAGGGGAGAGAAAAGGTAAGC 59.735 47.826 0.00 0.00 0.00 3.09
370 391 1.555533 AGGGGAGAGAAAAGGTAAGCG 59.444 52.381 0.00 0.00 0.00 4.68
371 392 1.407025 GGGGAGAGAAAAGGTAAGCGG 60.407 57.143 0.00 0.00 0.00 5.52
372 393 1.407025 GGGAGAGAAAAGGTAAGCGGG 60.407 57.143 0.00 0.00 0.00 6.13
373 394 1.370609 GAGAGAAAAGGTAAGCGGGC 58.629 55.000 0.00 0.00 0.00 6.13
374 395 0.984995 AGAGAAAAGGTAAGCGGGCT 59.015 50.000 0.00 0.00 0.00 5.19
375 396 1.351350 AGAGAAAAGGTAAGCGGGCTT 59.649 47.619 11.10 11.10 39.83 4.35
376 397 2.160205 GAGAAAAGGTAAGCGGGCTTT 58.840 47.619 11.62 0.00 37.47 3.51
377 398 2.557056 GAGAAAAGGTAAGCGGGCTTTT 59.443 45.455 11.62 0.00 37.47 2.27
378 399 2.557056 AGAAAAGGTAAGCGGGCTTTTC 59.443 45.455 11.62 8.67 41.56 2.29
379 400 0.879090 AAAGGTAAGCGGGCTTTTCG 59.121 50.000 11.62 0.00 37.47 3.46
380 401 0.250597 AAGGTAAGCGGGCTTTTCGT 60.251 50.000 11.62 4.76 37.47 3.85
381 402 0.953960 AGGTAAGCGGGCTTTTCGTG 60.954 55.000 11.62 0.00 37.47 4.35
382 403 0.952010 GGTAAGCGGGCTTTTCGTGA 60.952 55.000 11.62 0.00 37.47 4.35
383 404 0.869730 GTAAGCGGGCTTTTCGTGAA 59.130 50.000 11.62 0.00 37.47 3.18
384 405 1.136057 GTAAGCGGGCTTTTCGTGAAG 60.136 52.381 11.62 0.00 37.47 3.02
385 406 0.534203 AAGCGGGCTTTTCGTGAAGA 60.534 50.000 0.00 0.00 31.29 2.87
386 407 0.951040 AGCGGGCTTTTCGTGAAGAG 60.951 55.000 5.02 0.00 0.00 2.85
387 408 1.497722 CGGGCTTTTCGTGAAGAGC 59.502 57.895 14.75 14.75 44.81 4.09
391 412 0.110010 GCTTTTCGTGAAGAGCCAGC 60.110 55.000 12.68 0.55 41.17 4.85
392 413 1.517242 CTTTTCGTGAAGAGCCAGCT 58.483 50.000 0.00 0.00 0.00 4.24
393 414 1.462670 CTTTTCGTGAAGAGCCAGCTC 59.537 52.381 11.78 11.78 43.03 4.09
401 422 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
402 423 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
403 424 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
413 434 2.187946 GCACGTGCTCCTAGGCAT 59.812 61.111 32.55 0.00 44.34 4.40
414 435 1.450312 GCACGTGCTCCTAGGCATT 60.450 57.895 32.55 0.00 44.34 3.56
415 436 1.026718 GCACGTGCTCCTAGGCATTT 61.027 55.000 32.55 0.00 44.34 2.32
416 437 1.453155 CACGTGCTCCTAGGCATTTT 58.547 50.000 0.82 0.00 44.34 1.82
417 438 2.627945 CACGTGCTCCTAGGCATTTTA 58.372 47.619 0.82 0.00 44.34 1.52
418 439 3.206150 CACGTGCTCCTAGGCATTTTAT 58.794 45.455 0.82 0.00 44.34 1.40
419 440 3.002656 CACGTGCTCCTAGGCATTTTATG 59.997 47.826 0.82 0.00 44.34 1.90
420 441 3.118408 ACGTGCTCCTAGGCATTTTATGA 60.118 43.478 2.96 0.00 44.34 2.15
421 442 3.496130 CGTGCTCCTAGGCATTTTATGAG 59.504 47.826 2.96 0.00 44.34 2.90
422 443 4.708177 GTGCTCCTAGGCATTTTATGAGA 58.292 43.478 2.96 0.00 44.34 3.27
423 444 5.126067 GTGCTCCTAGGCATTTTATGAGAA 58.874 41.667 2.96 0.00 44.34 2.87
424 445 5.767168 GTGCTCCTAGGCATTTTATGAGAAT 59.233 40.000 2.96 0.00 44.34 2.40
425 446 5.766670 TGCTCCTAGGCATTTTATGAGAATG 59.233 40.000 2.96 0.00 37.29 2.67
426 447 6.000219 GCTCCTAGGCATTTTATGAGAATGA 59.000 40.000 2.96 0.00 36.78 2.57
427 448 6.488006 GCTCCTAGGCATTTTATGAGAATGAA 59.512 38.462 2.96 0.00 36.78 2.57
428 449 7.013655 GCTCCTAGGCATTTTATGAGAATGAAA 59.986 37.037 2.96 0.00 36.78 2.69
429 450 8.455903 TCCTAGGCATTTTATGAGAATGAAAG 57.544 34.615 2.96 0.00 36.78 2.62
430 451 7.503566 TCCTAGGCATTTTATGAGAATGAAAGG 59.496 37.037 2.96 4.38 36.78 3.11
431 452 7.286316 CCTAGGCATTTTATGAGAATGAAAGGT 59.714 37.037 0.00 0.00 36.78 3.50
432 453 6.870769 AGGCATTTTATGAGAATGAAAGGTG 58.129 36.000 1.32 0.00 36.78 4.00
433 454 6.044682 GGCATTTTATGAGAATGAAAGGTGG 58.955 40.000 1.32 0.00 36.78 4.61
434 455 6.044682 GCATTTTATGAGAATGAAAGGTGGG 58.955 40.000 1.32 0.00 36.78 4.61
435 456 5.659440 TTTTATGAGAATGAAAGGTGGGC 57.341 39.130 0.00 0.00 0.00 5.36
436 457 2.149973 ATGAGAATGAAAGGTGGGCC 57.850 50.000 0.00 0.00 0.00 5.80
437 458 0.776810 TGAGAATGAAAGGTGGGCCA 59.223 50.000 0.00 0.00 37.19 5.36
438 459 1.177401 GAGAATGAAAGGTGGGCCAC 58.823 55.000 28.69 28.69 37.19 5.01
439 460 0.482446 AGAATGAAAGGTGGGCCACA 59.518 50.000 35.69 17.39 35.86 4.17
440 461 1.077663 AGAATGAAAGGTGGGCCACAT 59.922 47.619 35.69 28.70 35.86 3.21
441 462 2.311542 AGAATGAAAGGTGGGCCACATA 59.688 45.455 35.69 16.77 35.86 2.29
442 463 2.143876 ATGAAAGGTGGGCCACATAC 57.856 50.000 35.69 25.50 35.86 2.39
443 464 1.072266 TGAAAGGTGGGCCACATACT 58.928 50.000 35.69 21.93 35.86 2.12
444 465 2.270858 TGAAAGGTGGGCCACATACTA 58.729 47.619 35.69 16.83 35.86 1.82
445 466 2.645297 TGAAAGGTGGGCCACATACTAA 59.355 45.455 35.69 14.52 35.86 2.24
446 467 3.074687 TGAAAGGTGGGCCACATACTAAA 59.925 43.478 35.69 13.51 35.86 1.85
447 468 3.818295 AAGGTGGGCCACATACTAAAA 57.182 42.857 35.69 0.00 35.86 1.52
448 469 3.818295 AGGTGGGCCACATACTAAAAA 57.182 42.857 35.69 0.00 35.86 1.94
499 520 4.796110 ACATGTTGGCTATAAGATGGGT 57.204 40.909 0.00 0.00 36.09 4.51
500 521 5.129368 ACATGTTGGCTATAAGATGGGTT 57.871 39.130 0.00 0.00 36.09 4.11
501 522 4.889409 ACATGTTGGCTATAAGATGGGTTG 59.111 41.667 0.00 0.00 36.09 3.77
502 523 4.584638 TGTTGGCTATAAGATGGGTTGT 57.415 40.909 0.00 0.00 0.00 3.32
503 524 4.269183 TGTTGGCTATAAGATGGGTTGTG 58.731 43.478 0.00 0.00 0.00 3.33
504 525 3.576078 TGGCTATAAGATGGGTTGTGG 57.424 47.619 0.00 0.00 0.00 4.17
505 526 3.119319 TGGCTATAAGATGGGTTGTGGA 58.881 45.455 0.00 0.00 0.00 4.02
506 527 3.721575 TGGCTATAAGATGGGTTGTGGAT 59.278 43.478 0.00 0.00 0.00 3.41
507 528 4.074970 GGCTATAAGATGGGTTGTGGATG 58.925 47.826 0.00 0.00 0.00 3.51
508 529 4.202461 GGCTATAAGATGGGTTGTGGATGA 60.202 45.833 0.00 0.00 0.00 2.92
509 530 4.757149 GCTATAAGATGGGTTGTGGATGAC 59.243 45.833 0.00 0.00 0.00 3.06
510 531 4.860802 ATAAGATGGGTTGTGGATGACA 57.139 40.909 0.00 0.00 0.00 3.58
511 532 3.744940 AAGATGGGTTGTGGATGACAT 57.255 42.857 0.00 0.00 33.40 3.06
512 533 3.008835 AGATGGGTTGTGGATGACATG 57.991 47.619 0.00 0.00 33.40 3.21
513 534 2.577563 AGATGGGTTGTGGATGACATGA 59.422 45.455 0.00 0.00 33.40 3.07
514 535 2.198827 TGGGTTGTGGATGACATGAC 57.801 50.000 0.00 0.00 33.40 3.06
515 536 1.423161 TGGGTTGTGGATGACATGACA 59.577 47.619 0.00 0.00 33.40 3.58
516 537 2.158549 TGGGTTGTGGATGACATGACAA 60.159 45.455 0.00 0.00 33.40 3.18
517 538 3.091545 GGGTTGTGGATGACATGACAAT 58.908 45.455 0.00 0.00 33.40 2.71
518 539 4.263683 TGGGTTGTGGATGACATGACAATA 60.264 41.667 0.00 0.00 33.40 1.90
519 540 4.336433 GGGTTGTGGATGACATGACAATAG 59.664 45.833 0.00 0.00 33.40 1.73
520 541 4.201950 GGTTGTGGATGACATGACAATAGC 60.202 45.833 0.00 0.00 33.40 2.97
521 542 4.492494 TGTGGATGACATGACAATAGCT 57.508 40.909 0.00 0.00 0.00 3.32
522 543 4.847198 TGTGGATGACATGACAATAGCTT 58.153 39.130 0.00 0.00 0.00 3.74
523 544 5.988287 TGTGGATGACATGACAATAGCTTA 58.012 37.500 0.00 0.00 0.00 3.09
524 545 6.594744 TGTGGATGACATGACAATAGCTTAT 58.405 36.000 0.00 0.00 0.00 1.73
525 546 7.734942 TGTGGATGACATGACAATAGCTTATA 58.265 34.615 0.00 0.00 0.00 0.98
526 547 7.874528 TGTGGATGACATGACAATAGCTTATAG 59.125 37.037 0.00 0.00 0.00 1.31
527 548 7.875041 GTGGATGACATGACAATAGCTTATAGT 59.125 37.037 0.00 0.00 0.00 2.12
528 549 8.090831 TGGATGACATGACAATAGCTTATAGTC 58.909 37.037 0.00 0.00 0.00 2.59
529 550 8.090831 GGATGACATGACAATAGCTTATAGTCA 58.909 37.037 0.00 11.61 42.62 3.41
530 551 9.138062 GATGACATGACAATAGCTTATAGTCAG 57.862 37.037 0.00 9.69 41.85 3.51
531 552 6.925718 TGACATGACAATAGCTTATAGTCAGC 59.074 38.462 0.00 8.33 41.85 4.26
532 553 6.820335 ACATGACAATAGCTTATAGTCAGCA 58.180 36.000 0.00 0.00 41.85 4.41
533 554 6.927936 ACATGACAATAGCTTATAGTCAGCAG 59.072 38.462 0.00 9.85 41.85 4.24
534 555 5.292765 TGACAATAGCTTATAGTCAGCAGC 58.707 41.667 0.00 0.00 39.99 5.25
535 556 5.069648 TGACAATAGCTTATAGTCAGCAGCT 59.930 40.000 0.00 0.00 44.83 4.24
536 557 5.295950 ACAATAGCTTATAGTCAGCAGCTG 58.704 41.667 17.10 17.10 42.66 4.24
537 558 2.906691 AGCTTATAGTCAGCAGCTGG 57.093 50.000 22.62 5.41 41.17 4.85
538 559 1.202627 AGCTTATAGTCAGCAGCTGGC 60.203 52.381 20.03 20.03 41.17 4.85
552 573 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
553 574 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
554 575 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
555 576 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
556 577 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
590 611 8.511604 AGTGTTCATCTATCACATAAAAAGGG 57.488 34.615 0.00 0.00 34.94 3.95
591 612 8.109634 AGTGTTCATCTATCACATAAAAAGGGT 58.890 33.333 0.00 0.00 34.94 4.34
592 613 8.739972 GTGTTCATCTATCACATAAAAAGGGTT 58.260 33.333 0.00 0.00 33.04 4.11
593 614 9.308000 TGTTCATCTATCACATAAAAAGGGTTT 57.692 29.630 0.00 0.00 0.00 3.27
594 615 9.573133 GTTCATCTATCACATAAAAAGGGTTTG 57.427 33.333 0.00 0.00 0.00 2.93
595 616 8.877864 TCATCTATCACATAAAAAGGGTTTGT 57.122 30.769 0.00 0.00 0.00 2.83
596 617 9.308000 TCATCTATCACATAAAAAGGGTTTGTT 57.692 29.630 0.00 0.00 0.00 2.83
597 618 9.927668 CATCTATCACATAAAAAGGGTTTGTTT 57.072 29.630 0.00 0.00 0.00 2.83
654 693 0.757561 TCGACAGTCCTGGGTGTTGA 60.758 55.000 13.19 13.19 35.17 3.18
655 694 0.319900 CGACAGTCCTGGGTGTTGAG 60.320 60.000 10.32 1.26 30.58 3.02
662 701 2.039084 GTCCTGGGTGTTGAGTGAGATT 59.961 50.000 0.00 0.00 0.00 2.40
667 706 4.394729 TGGGTGTTGAGTGAGATTTAACC 58.605 43.478 0.00 0.00 0.00 2.85
670 709 5.300792 GGGTGTTGAGTGAGATTTAACCAAA 59.699 40.000 0.00 0.00 0.00 3.28
671 710 6.206498 GGTGTTGAGTGAGATTTAACCAAAC 58.794 40.000 0.00 0.00 0.00 2.93
672 711 6.206498 GTGTTGAGTGAGATTTAACCAAACC 58.794 40.000 0.00 0.00 0.00 3.27
673 712 5.300792 TGTTGAGTGAGATTTAACCAAACCC 59.699 40.000 0.00 0.00 0.00 4.11
674 713 4.069304 TGAGTGAGATTTAACCAAACCCG 58.931 43.478 0.00 0.00 0.00 5.28
675 714 4.070009 GAGTGAGATTTAACCAAACCCGT 58.930 43.478 0.00 0.00 0.00 5.28
676 715 5.221682 TGAGTGAGATTTAACCAAACCCGTA 60.222 40.000 0.00 0.00 0.00 4.02
677 716 4.999311 AGTGAGATTTAACCAAACCCGTAC 59.001 41.667 0.00 0.00 0.00 3.67
678 717 4.756135 GTGAGATTTAACCAAACCCGTACA 59.244 41.667 0.00 0.00 0.00 2.90
684 748 2.847959 ACCAAACCCGTACAAAAACG 57.152 45.000 0.00 0.00 42.49 3.60
685 749 2.363683 ACCAAACCCGTACAAAAACGA 58.636 42.857 0.00 0.00 45.68 3.85
691 755 2.203401 CCCGTACAAAAACGAGTGTGA 58.797 47.619 0.00 0.00 45.68 3.58
740 804 8.574196 GCATATATTGCCAACGAAGTAAATTT 57.426 30.769 0.00 0.00 43.71 1.82
746 810 7.861176 TTGCCAACGAAGTAAATTTATTGAC 57.139 32.000 0.31 0.00 45.00 3.18
747 811 6.383415 TGCCAACGAAGTAAATTTATTGACC 58.617 36.000 0.31 0.00 45.00 4.02
947 1042 2.670934 GCACTCACAGGCCAGTGG 60.671 66.667 26.18 18.92 40.45 4.00
962 1057 2.290514 CCAGTGGATCAAAAGGAGCAGA 60.291 50.000 1.68 0.00 32.12 4.26
963 1058 3.008330 CAGTGGATCAAAAGGAGCAGAG 58.992 50.000 0.00 0.00 32.12 3.35
964 1059 1.742268 GTGGATCAAAAGGAGCAGAGC 59.258 52.381 0.00 0.00 32.12 4.09
965 1060 1.352017 TGGATCAAAAGGAGCAGAGCA 59.648 47.619 0.00 0.00 32.12 4.26
966 1061 2.015587 GGATCAAAAGGAGCAGAGCAG 58.984 52.381 0.00 0.00 32.12 4.24
1008 1103 2.827051 CGTCAATGCCATGGCCTCG 61.827 63.158 33.44 23.57 41.09 4.63
1186 1293 1.298859 GCCGGTCATCAACCTGTCAC 61.299 60.000 1.90 0.00 46.87 3.67
1459 1569 3.698382 CGCTCTTCGTGGAGATGC 58.302 61.111 10.54 5.22 35.52 3.91
1460 1570 1.140589 CGCTCTTCGTGGAGATGCT 59.859 57.895 10.54 0.00 35.52 3.79
2216 2381 6.603095 CCAAATAGTAACAAGTTGAGTGCTC 58.397 40.000 10.54 0.00 0.00 4.26
2236 2401 5.413833 TGCTCCATTCAAAAGCAAAACAAAA 59.586 32.000 0.00 0.00 42.71 2.44
2237 2402 5.738693 GCTCCATTCAAAAGCAAAACAAAAC 59.261 36.000 0.00 0.00 36.06 2.43
2238 2403 6.622462 GCTCCATTCAAAAGCAAAACAAAACA 60.622 34.615 0.00 0.00 36.06 2.83
2239 2404 7.206981 TCCATTCAAAAGCAAAACAAAACAA 57.793 28.000 0.00 0.00 0.00 2.83
2240 2405 7.651808 TCCATTCAAAAGCAAAACAAAACAAA 58.348 26.923 0.00 0.00 0.00 2.83
2241 2406 8.137437 TCCATTCAAAAGCAAAACAAAACAAAA 58.863 25.926 0.00 0.00 0.00 2.44
2247 2412 9.192489 CAAAAGCAAAACAAAACAAAACAAAAC 57.808 25.926 0.00 0.00 0.00 2.43
2261 2426 3.163616 ACAAAACATTGGGGTCGGTAT 57.836 42.857 0.00 0.00 0.00 2.73
2284 2449 3.399330 CTTAACTGAGCCTCGTTTCCAA 58.601 45.455 7.13 0.00 0.00 3.53
2341 2506 9.598517 AACAAGCATGAATTCAGAGTTTTAAAA 57.401 25.926 14.54 0.00 0.00 1.52
2380 2545 3.008813 CCCATCATCACTTCCTCTATGGG 59.991 52.174 0.00 0.00 44.41 4.00
2524 2692 8.811017 ACTGAGAGAGATTCTTAAGTTCATCAA 58.189 33.333 1.63 0.00 35.87 2.57
2525 2693 9.820725 CTGAGAGAGATTCTTAAGTTCATCAAT 57.179 33.333 1.63 0.00 35.87 2.57
2587 2755 6.583806 CAGCATTTGATCAAAGTGTACCTTTC 59.416 38.462 24.17 9.33 41.51 2.62
2589 2757 6.803807 GCATTTGATCAAAGTGTACCTTTCTC 59.196 38.462 24.17 5.59 41.51 2.87
2811 2979 0.322456 CTCGAATCCAGGGTTTGCCA 60.322 55.000 0.00 0.00 36.17 4.92
2831 2999 4.760047 GTCGGCGGTGGCACTGAT 62.760 66.667 29.90 0.00 42.47 2.90
2962 3130 1.228154 AGACCAAGGAAACACCGCC 60.228 57.895 0.00 0.00 44.74 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.443958 AGAAATTAAGCTGGAGCCCC 57.556 50.000 0.00 0.00 43.38 5.80
1 2 3.625853 AGAAGAAATTAAGCTGGAGCCC 58.374 45.455 0.00 0.00 43.38 5.19
2 3 4.522114 AGAGAAGAAATTAAGCTGGAGCC 58.478 43.478 0.00 0.00 43.38 4.70
3 4 5.525745 GGTAGAGAAGAAATTAAGCTGGAGC 59.474 44.000 0.00 0.00 42.49 4.70
4 5 6.644347 TGGTAGAGAAGAAATTAAGCTGGAG 58.356 40.000 0.00 0.00 0.00 3.86
5 6 6.620877 TGGTAGAGAAGAAATTAAGCTGGA 57.379 37.500 0.00 0.00 0.00 3.86
6 7 7.872113 ATTGGTAGAGAAGAAATTAAGCTGG 57.128 36.000 0.00 0.00 0.00 4.85
7 8 9.565213 CAAATTGGTAGAGAAGAAATTAAGCTG 57.435 33.333 0.00 0.00 0.00 4.24
8 9 8.246871 GCAAATTGGTAGAGAAGAAATTAAGCT 58.753 33.333 0.00 0.00 0.00 3.74
9 10 8.028938 TGCAAATTGGTAGAGAAGAAATTAAGC 58.971 33.333 0.00 0.00 0.00 3.09
10 11 9.346725 GTGCAAATTGGTAGAGAAGAAATTAAG 57.653 33.333 0.00 0.00 0.00 1.85
11 12 8.855110 TGTGCAAATTGGTAGAGAAGAAATTAA 58.145 29.630 0.00 0.00 0.00 1.40
12 13 8.296713 GTGTGCAAATTGGTAGAGAAGAAATTA 58.703 33.333 0.00 0.00 0.00 1.40
13 14 7.147976 GTGTGCAAATTGGTAGAGAAGAAATT 58.852 34.615 0.00 0.00 0.00 1.82
14 15 6.568462 CGTGTGCAAATTGGTAGAGAAGAAAT 60.568 38.462 0.00 0.00 0.00 2.17
15 16 5.277779 CGTGTGCAAATTGGTAGAGAAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
16 17 4.213270 CGTGTGCAAATTGGTAGAGAAGAA 59.787 41.667 0.00 0.00 0.00 2.52
17 18 3.745975 CGTGTGCAAATTGGTAGAGAAGA 59.254 43.478 0.00 0.00 0.00 2.87
18 19 3.120199 CCGTGTGCAAATTGGTAGAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
19 20 2.811431 CCGTGTGCAAATTGGTAGAGAA 59.189 45.455 0.00 0.00 0.00 2.87
20 21 2.422597 CCGTGTGCAAATTGGTAGAGA 58.577 47.619 0.00 0.00 0.00 3.10
21 22 1.135689 GCCGTGTGCAAATTGGTAGAG 60.136 52.381 0.00 0.00 40.77 2.43
22 23 0.878416 GCCGTGTGCAAATTGGTAGA 59.122 50.000 0.00 0.00 40.77 2.59
23 24 3.399879 GCCGTGTGCAAATTGGTAG 57.600 52.632 0.00 0.00 40.77 3.18
33 34 1.371635 GGAACAACATGCCGTGTGC 60.372 57.895 0.00 0.00 41.14 4.57
34 35 0.667993 AAGGAACAACATGCCGTGTG 59.332 50.000 0.00 0.00 41.14 3.82
35 36 1.336755 GAAAGGAACAACATGCCGTGT 59.663 47.619 0.00 0.00 44.84 4.49
36 37 1.662876 CGAAAGGAACAACATGCCGTG 60.663 52.381 0.00 0.00 0.00 4.94
37 38 0.591170 CGAAAGGAACAACATGCCGT 59.409 50.000 0.00 0.00 0.00 5.68
38 39 0.729140 GCGAAAGGAACAACATGCCG 60.729 55.000 0.00 0.00 0.00 5.69
39 40 0.313672 TGCGAAAGGAACAACATGCC 59.686 50.000 0.00 0.00 0.00 4.40
40 41 1.987770 CATGCGAAAGGAACAACATGC 59.012 47.619 0.00 0.00 32.68 4.06
41 42 3.557577 TCATGCGAAAGGAACAACATG 57.442 42.857 0.00 0.00 36.97 3.21
42 43 3.674138 GCATCATGCGAAAGGAACAACAT 60.674 43.478 0.00 0.00 31.71 2.71
43 44 2.351641 GCATCATGCGAAAGGAACAACA 60.352 45.455 0.00 0.00 31.71 3.33
44 45 2.253603 GCATCATGCGAAAGGAACAAC 58.746 47.619 0.00 0.00 31.71 3.32
45 46 2.634982 GCATCATGCGAAAGGAACAA 57.365 45.000 0.00 0.00 31.71 2.83
58 59 2.545537 ACGCATGAGAGATGCATCAT 57.454 45.000 27.81 16.19 44.75 2.45
59 60 2.320745 AACGCATGAGAGATGCATCA 57.679 45.000 27.81 9.94 44.75 3.07
60 61 3.363772 GCTAAACGCATGAGAGATGCATC 60.364 47.826 19.37 19.37 44.75 3.91
61 62 2.547211 GCTAAACGCATGAGAGATGCAT 59.453 45.455 0.00 0.00 44.75 3.96
62 63 1.935873 GCTAAACGCATGAGAGATGCA 59.064 47.619 2.50 0.00 44.75 3.96
63 64 1.262683 GGCTAAACGCATGAGAGATGC 59.737 52.381 2.50 2.37 41.67 3.91
64 65 1.869767 GGGCTAAACGCATGAGAGATG 59.130 52.381 2.50 0.00 41.67 2.90
65 66 1.765314 AGGGCTAAACGCATGAGAGAT 59.235 47.619 2.50 0.00 41.67 2.75
66 67 1.134699 CAGGGCTAAACGCATGAGAGA 60.135 52.381 2.50 0.00 41.67 3.10
67 68 1.293924 CAGGGCTAAACGCATGAGAG 58.706 55.000 2.50 0.00 41.67 3.20
68 69 0.107703 CCAGGGCTAAACGCATGAGA 60.108 55.000 2.50 0.00 41.67 3.27
69 70 0.392998 ACCAGGGCTAAACGCATGAG 60.393 55.000 0.00 0.00 41.67 2.90
70 71 0.676466 CACCAGGGCTAAACGCATGA 60.676 55.000 0.00 0.00 41.67 3.07
71 72 1.802636 CACCAGGGCTAAACGCATG 59.197 57.895 0.00 0.00 41.67 4.06
72 73 2.046285 GCACCAGGGCTAAACGCAT 61.046 57.895 0.00 0.00 41.67 4.73
73 74 2.671619 GCACCAGGGCTAAACGCA 60.672 61.111 0.00 0.00 41.67 5.24
74 75 1.923227 GAAGCACCAGGGCTAAACGC 61.923 60.000 0.00 0.00 45.07 4.84
75 76 1.305930 GGAAGCACCAGGGCTAAACG 61.306 60.000 0.00 0.00 45.07 3.60
76 77 0.038310 AGGAAGCACCAGGGCTAAAC 59.962 55.000 0.00 0.00 45.07 2.01
77 78 0.328258 GAGGAAGCACCAGGGCTAAA 59.672 55.000 0.00 0.00 45.07 1.85
78 79 0.547712 AGAGGAAGCACCAGGGCTAA 60.548 55.000 0.00 0.00 45.07 3.09
79 80 0.978146 GAGAGGAAGCACCAGGGCTA 60.978 60.000 0.00 0.00 45.07 3.93
81 82 2.270527 GAGAGGAAGCACCAGGGC 59.729 66.667 0.00 0.00 42.04 5.19
82 83 1.544825 TTCGAGAGGAAGCACCAGGG 61.545 60.000 0.00 0.00 42.04 4.45
83 84 0.390472 GTTCGAGAGGAAGCACCAGG 60.390 60.000 2.96 0.00 42.04 4.45
84 85 3.129792 GTTCGAGAGGAAGCACCAG 57.870 57.895 2.96 0.00 42.04 4.00
90 91 1.407258 CTAGCCTGGTTCGAGAGGAAG 59.593 57.143 10.55 4.32 34.69 3.46
91 92 1.272536 ACTAGCCTGGTTCGAGAGGAA 60.273 52.381 10.55 0.00 0.00 3.36
92 93 0.331954 ACTAGCCTGGTTCGAGAGGA 59.668 55.000 10.55 0.00 0.00 3.71
93 94 0.457851 CACTAGCCTGGTTCGAGAGG 59.542 60.000 0.00 3.43 0.00 3.69
94 95 0.457851 CCACTAGCCTGGTTCGAGAG 59.542 60.000 0.00 0.00 0.00 3.20
95 96 1.605058 GCCACTAGCCTGGTTCGAGA 61.605 60.000 0.00 0.00 33.30 4.04
96 97 1.153549 GCCACTAGCCTGGTTCGAG 60.154 63.158 0.00 0.00 33.30 4.04
97 98 2.978824 GCCACTAGCCTGGTTCGA 59.021 61.111 0.00 0.00 33.30 3.71
98 99 1.940883 TACGCCACTAGCCTGGTTCG 61.941 60.000 0.00 0.73 38.78 3.95
99 100 0.179108 CTACGCCACTAGCCTGGTTC 60.179 60.000 0.00 0.00 38.78 3.62
100 101 0.613853 TCTACGCCACTAGCCTGGTT 60.614 55.000 0.00 0.00 38.78 3.67
101 102 1.000019 TCTACGCCACTAGCCTGGT 60.000 57.895 0.00 0.00 38.78 4.00
102 103 1.437986 GTCTACGCCACTAGCCTGG 59.562 63.158 0.00 0.00 38.78 4.45
103 104 1.064296 CGTCTACGCCACTAGCCTG 59.936 63.158 0.00 0.00 38.78 4.85
104 105 0.465824 ATCGTCTACGCCACTAGCCT 60.466 55.000 0.00 0.00 38.78 4.58
105 106 1.233019 TATCGTCTACGCCACTAGCC 58.767 55.000 0.00 0.00 38.78 3.93
106 107 2.483106 TCATATCGTCTACGCCACTAGC 59.517 50.000 0.00 0.00 39.60 3.42
107 108 3.125487 CCTCATATCGTCTACGCCACTAG 59.875 52.174 0.00 0.00 39.60 2.57
108 109 3.072211 CCTCATATCGTCTACGCCACTA 58.928 50.000 0.00 0.00 39.60 2.74
109 110 1.880675 CCTCATATCGTCTACGCCACT 59.119 52.381 0.00 0.00 39.60 4.00
110 111 1.068472 CCCTCATATCGTCTACGCCAC 60.068 57.143 0.00 0.00 39.60 5.01
111 112 1.244816 CCCTCATATCGTCTACGCCA 58.755 55.000 0.00 0.00 39.60 5.69
112 113 0.109226 GCCCTCATATCGTCTACGCC 60.109 60.000 0.00 0.00 39.60 5.68
113 114 0.882474 AGCCCTCATATCGTCTACGC 59.118 55.000 0.00 0.00 39.60 4.42
114 115 4.512198 CCTATAGCCCTCATATCGTCTACG 59.488 50.000 0.00 0.00 41.45 3.51
115 116 5.682659 TCCTATAGCCCTCATATCGTCTAC 58.317 45.833 0.00 0.00 0.00 2.59
116 117 5.970501 TCCTATAGCCCTCATATCGTCTA 57.029 43.478 0.00 0.00 0.00 2.59
117 118 4.864483 TCCTATAGCCCTCATATCGTCT 57.136 45.455 0.00 0.00 0.00 4.18
118 119 5.009210 GTGATCCTATAGCCCTCATATCGTC 59.991 48.000 0.00 0.00 0.00 4.20
119 120 4.890581 GTGATCCTATAGCCCTCATATCGT 59.109 45.833 0.00 0.00 0.00 3.73
120 121 4.023622 CGTGATCCTATAGCCCTCATATCG 60.024 50.000 0.00 0.00 0.00 2.92
121 122 5.009210 GTCGTGATCCTATAGCCCTCATATC 59.991 48.000 0.00 0.00 0.00 1.63
122 123 4.890581 GTCGTGATCCTATAGCCCTCATAT 59.109 45.833 0.00 0.00 0.00 1.78
123 124 4.270834 GTCGTGATCCTATAGCCCTCATA 58.729 47.826 0.00 0.00 0.00 2.15
124 125 3.093057 GTCGTGATCCTATAGCCCTCAT 58.907 50.000 0.00 0.00 0.00 2.90
125 126 2.515854 GTCGTGATCCTATAGCCCTCA 58.484 52.381 0.00 0.00 0.00 3.86
126 127 1.469308 CGTCGTGATCCTATAGCCCTC 59.531 57.143 0.00 0.00 0.00 4.30
127 128 1.535833 CGTCGTGATCCTATAGCCCT 58.464 55.000 0.00 0.00 0.00 5.19
128 129 0.109226 GCGTCGTGATCCTATAGCCC 60.109 60.000 0.00 0.00 0.00 5.19
129 130 0.454620 CGCGTCGTGATCCTATAGCC 60.455 60.000 0.00 0.00 0.00 3.93
130 131 0.237761 ACGCGTCGTGATCCTATAGC 59.762 55.000 13.68 0.00 39.18 2.97
141 142 1.071019 GACATCATGACACGCGTCGT 61.071 55.000 9.86 11.83 45.80 4.34
142 143 1.625870 GACATCATGACACGCGTCG 59.374 57.895 9.86 8.08 45.80 5.12
143 144 1.071019 ACGACATCATGACACGCGTC 61.071 55.000 9.86 0.00 42.93 5.19
144 145 1.080772 ACGACATCATGACACGCGT 60.081 52.632 5.58 5.58 0.00 6.01
145 146 1.341467 CACGACATCATGACACGCG 59.659 57.895 3.53 3.53 0.00 6.01
146 147 0.366871 GACACGACATCATGACACGC 59.633 55.000 14.78 0.00 0.00 5.34
147 148 1.982612 AGACACGACATCATGACACG 58.017 50.000 0.00 7.01 0.00 4.49
148 149 3.579709 AGAAGACACGACATCATGACAC 58.420 45.455 0.00 0.00 0.00 3.67
149 150 3.942130 AGAAGACACGACATCATGACA 57.058 42.857 0.00 0.00 0.00 3.58
150 151 6.893958 ATAAAGAAGACACGACATCATGAC 57.106 37.500 0.00 0.00 0.00 3.06
151 152 8.996024 TTAATAAAGAAGACACGACATCATGA 57.004 30.769 0.00 0.00 0.00 3.07
171 172 9.590451 ACGAATCGACCAGAGTTTTTATTAATA 57.410 29.630 10.55 0.00 0.00 0.98
172 173 8.488651 ACGAATCGACCAGAGTTTTTATTAAT 57.511 30.769 10.55 0.00 0.00 1.40
173 174 7.894376 ACGAATCGACCAGAGTTTTTATTAA 57.106 32.000 10.55 0.00 0.00 1.40
174 175 7.894376 AACGAATCGACCAGAGTTTTTATTA 57.106 32.000 10.55 0.00 0.00 0.98
175 176 6.796705 AACGAATCGACCAGAGTTTTTATT 57.203 33.333 10.55 0.00 0.00 1.40
178 179 5.295152 ACTAACGAATCGACCAGAGTTTTT 58.705 37.500 10.55 0.00 0.00 1.94
186 187 3.646611 TGTTGACTAACGAATCGACCA 57.353 42.857 10.55 0.00 39.71 4.02
221 222 0.039437 GAAACTCGTGACTCGGCTCA 60.039 55.000 0.00 0.00 40.32 4.26
255 276 1.153549 CTTAGAGCACAGTCGGGGC 60.154 63.158 0.00 0.00 0.00 5.80
269 290 9.757227 ACTCAGCTTTACTATATTTGCTCTTAG 57.243 33.333 0.00 0.00 0.00 2.18
270 291 9.751542 GACTCAGCTTTACTATATTTGCTCTTA 57.248 33.333 0.00 0.00 0.00 2.10
271 292 8.260818 TGACTCAGCTTTACTATATTTGCTCTT 58.739 33.333 0.00 0.00 0.00 2.85
272 293 7.786030 TGACTCAGCTTTACTATATTTGCTCT 58.214 34.615 0.00 0.00 0.00 4.09
273 294 8.071122 CTGACTCAGCTTTACTATATTTGCTC 57.929 38.462 0.00 0.00 0.00 4.26
290 311 1.000283 CCTTATAGCCCGCTGACTCAG 60.000 57.143 1.21 1.21 34.12 3.35
291 312 1.040646 CCTTATAGCCCGCTGACTCA 58.959 55.000 0.00 0.00 0.00 3.41
292 313 1.329256 TCCTTATAGCCCGCTGACTC 58.671 55.000 0.00 0.00 0.00 3.36
293 314 1.789523 TTCCTTATAGCCCGCTGACT 58.210 50.000 0.00 0.00 0.00 3.41
294 315 2.841442 ATTCCTTATAGCCCGCTGAC 57.159 50.000 0.00 0.00 0.00 3.51
295 316 4.347000 AGTTTATTCCTTATAGCCCGCTGA 59.653 41.667 0.00 0.00 0.00 4.26
296 317 4.642429 AGTTTATTCCTTATAGCCCGCTG 58.358 43.478 0.00 0.00 0.00 5.18
297 318 4.976540 AGTTTATTCCTTATAGCCCGCT 57.023 40.909 0.00 0.00 0.00 5.52
298 319 5.791666 ACTAGTTTATTCCTTATAGCCCGC 58.208 41.667 0.00 0.00 0.00 6.13
324 345 9.598517 TTCTTTTTGCTTCAACTAAACATGAAT 57.401 25.926 0.00 0.00 0.00 2.57
325 346 8.994429 TTCTTTTTGCTTCAACTAAACATGAA 57.006 26.923 0.00 0.00 0.00 2.57
326 347 7.706179 CCTTCTTTTTGCTTCAACTAAACATGA 59.294 33.333 0.00 0.00 0.00 3.07
327 348 7.042523 CCCTTCTTTTTGCTTCAACTAAACATG 60.043 37.037 0.00 0.00 0.00 3.21
328 349 6.986231 CCCTTCTTTTTGCTTCAACTAAACAT 59.014 34.615 0.00 0.00 0.00 2.71
329 350 6.337356 CCCTTCTTTTTGCTTCAACTAAACA 58.663 36.000 0.00 0.00 0.00 2.83
330 351 5.753438 CCCCTTCTTTTTGCTTCAACTAAAC 59.247 40.000 0.00 0.00 0.00 2.01
331 352 5.659079 TCCCCTTCTTTTTGCTTCAACTAAA 59.341 36.000 0.00 0.00 0.00 1.85
332 353 5.205056 TCCCCTTCTTTTTGCTTCAACTAA 58.795 37.500 0.00 0.00 0.00 2.24
333 354 4.798882 TCCCCTTCTTTTTGCTTCAACTA 58.201 39.130 0.00 0.00 0.00 2.24
334 355 3.638627 CTCCCCTTCTTTTTGCTTCAACT 59.361 43.478 0.00 0.00 0.00 3.16
335 356 3.636764 TCTCCCCTTCTTTTTGCTTCAAC 59.363 43.478 0.00 0.00 0.00 3.18
336 357 3.891366 CTCTCCCCTTCTTTTTGCTTCAA 59.109 43.478 0.00 0.00 0.00 2.69
337 358 3.138283 TCTCTCCCCTTCTTTTTGCTTCA 59.862 43.478 0.00 0.00 0.00 3.02
338 359 3.756117 TCTCTCCCCTTCTTTTTGCTTC 58.244 45.455 0.00 0.00 0.00 3.86
339 360 3.884037 TCTCTCCCCTTCTTTTTGCTT 57.116 42.857 0.00 0.00 0.00 3.91
340 361 3.884037 TTCTCTCCCCTTCTTTTTGCT 57.116 42.857 0.00 0.00 0.00 3.91
341 362 4.262207 CCTTTTCTCTCCCCTTCTTTTTGC 60.262 45.833 0.00 0.00 0.00 3.68
342 363 4.895889 ACCTTTTCTCTCCCCTTCTTTTTG 59.104 41.667 0.00 0.00 0.00 2.44
343 364 5.144159 ACCTTTTCTCTCCCCTTCTTTTT 57.856 39.130 0.00 0.00 0.00 1.94
344 365 4.816048 ACCTTTTCTCTCCCCTTCTTTT 57.184 40.909 0.00 0.00 0.00 2.27
345 366 5.749331 GCTTACCTTTTCTCTCCCCTTCTTT 60.749 44.000 0.00 0.00 0.00 2.52
346 367 4.263550 GCTTACCTTTTCTCTCCCCTTCTT 60.264 45.833 0.00 0.00 0.00 2.52
347 368 3.264706 GCTTACCTTTTCTCTCCCCTTCT 59.735 47.826 0.00 0.00 0.00 2.85
348 369 3.611970 GCTTACCTTTTCTCTCCCCTTC 58.388 50.000 0.00 0.00 0.00 3.46
349 370 2.027100 CGCTTACCTTTTCTCTCCCCTT 60.027 50.000 0.00 0.00 0.00 3.95
350 371 1.555533 CGCTTACCTTTTCTCTCCCCT 59.444 52.381 0.00 0.00 0.00 4.79
351 372 1.407025 CCGCTTACCTTTTCTCTCCCC 60.407 57.143 0.00 0.00 0.00 4.81
352 373 1.407025 CCCGCTTACCTTTTCTCTCCC 60.407 57.143 0.00 0.00 0.00 4.30
353 374 2.012554 GCCCGCTTACCTTTTCTCTCC 61.013 57.143 0.00 0.00 0.00 3.71
354 375 1.066071 AGCCCGCTTACCTTTTCTCTC 60.066 52.381 0.00 0.00 0.00 3.20
355 376 0.984995 AGCCCGCTTACCTTTTCTCT 59.015 50.000 0.00 0.00 0.00 3.10
356 377 1.822506 AAGCCCGCTTACCTTTTCTC 58.177 50.000 0.00 0.00 34.05 2.87
357 378 2.287977 AAAGCCCGCTTACCTTTTCT 57.712 45.000 1.66 0.00 34.84 2.52
358 379 2.667448 CGAAAAGCCCGCTTACCTTTTC 60.667 50.000 1.66 12.58 45.32 2.29
359 380 1.268625 CGAAAAGCCCGCTTACCTTTT 59.731 47.619 1.66 0.00 40.39 2.27
360 381 0.879090 CGAAAAGCCCGCTTACCTTT 59.121 50.000 1.66 0.00 34.84 3.11
361 382 0.250597 ACGAAAAGCCCGCTTACCTT 60.251 50.000 1.66 0.00 34.84 3.50
362 383 0.953960 CACGAAAAGCCCGCTTACCT 60.954 55.000 1.66 0.00 34.84 3.08
363 384 0.952010 TCACGAAAAGCCCGCTTACC 60.952 55.000 1.66 0.00 34.84 2.85
364 385 0.869730 TTCACGAAAAGCCCGCTTAC 59.130 50.000 1.66 0.00 34.84 2.34
365 386 1.153353 CTTCACGAAAAGCCCGCTTA 58.847 50.000 1.66 0.00 34.84 3.09
366 387 0.534203 TCTTCACGAAAAGCCCGCTT 60.534 50.000 0.00 0.00 37.98 4.68
367 388 0.951040 CTCTTCACGAAAAGCCCGCT 60.951 55.000 0.00 0.00 0.00 5.52
368 389 1.497722 CTCTTCACGAAAAGCCCGC 59.502 57.895 0.00 0.00 0.00 6.13
369 390 1.497722 GCTCTTCACGAAAAGCCCG 59.502 57.895 0.00 0.00 0.00 6.13
370 391 1.876664 GGCTCTTCACGAAAAGCCC 59.123 57.895 12.33 0.00 46.97 5.19
372 393 0.110010 GCTGGCTCTTCACGAAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
373 394 1.462670 GAGCTGGCTCTTCACGAAAAG 59.537 52.381 14.51 0.00 39.80 2.27
374 395 1.512926 GAGCTGGCTCTTCACGAAAA 58.487 50.000 14.51 0.00 39.80 2.29
375 396 3.217242 GAGCTGGCTCTTCACGAAA 57.783 52.632 14.51 0.00 39.80 3.46
376 397 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
384 405 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
385 406 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
386 407 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
402 423 6.000219 TCATTCTCATAAAATGCCTAGGAGC 59.000 40.000 14.75 0.00 34.73 4.70
403 424 8.455903 TTTCATTCTCATAAAATGCCTAGGAG 57.544 34.615 14.75 0.00 34.73 3.69
404 425 7.503566 CCTTTCATTCTCATAAAATGCCTAGGA 59.496 37.037 14.75 0.00 34.73 2.94
405 426 7.286316 ACCTTTCATTCTCATAAAATGCCTAGG 59.714 37.037 3.67 3.67 34.73 3.02
406 427 8.133627 CACCTTTCATTCTCATAAAATGCCTAG 58.866 37.037 0.00 0.00 34.73 3.02
407 428 7.068593 CCACCTTTCATTCTCATAAAATGCCTA 59.931 37.037 0.00 0.00 34.73 3.93
408 429 6.127253 CCACCTTTCATTCTCATAAAATGCCT 60.127 38.462 0.00 0.00 34.73 4.75
409 430 6.044682 CCACCTTTCATTCTCATAAAATGCC 58.955 40.000 0.00 0.00 34.73 4.40
410 431 6.044682 CCCACCTTTCATTCTCATAAAATGC 58.955 40.000 0.00 0.00 34.73 3.56
411 432 6.044682 GCCCACCTTTCATTCTCATAAAATG 58.955 40.000 0.00 0.00 35.81 2.32
412 433 5.129320 GGCCCACCTTTCATTCTCATAAAAT 59.871 40.000 0.00 0.00 0.00 1.82
413 434 4.466015 GGCCCACCTTTCATTCTCATAAAA 59.534 41.667 0.00 0.00 0.00 1.52
414 435 4.023291 GGCCCACCTTTCATTCTCATAAA 58.977 43.478 0.00 0.00 0.00 1.40
415 436 3.011144 TGGCCCACCTTTCATTCTCATAA 59.989 43.478 0.00 0.00 36.63 1.90
416 437 2.580322 TGGCCCACCTTTCATTCTCATA 59.420 45.455 0.00 0.00 36.63 2.15
417 438 1.358787 TGGCCCACCTTTCATTCTCAT 59.641 47.619 0.00 0.00 36.63 2.90
418 439 0.776810 TGGCCCACCTTTCATTCTCA 59.223 50.000 0.00 0.00 36.63 3.27
419 440 1.177401 GTGGCCCACCTTTCATTCTC 58.823 55.000 1.17 0.00 36.63 2.87
420 441 0.482446 TGTGGCCCACCTTTCATTCT 59.518 50.000 12.25 0.00 36.63 2.40
421 442 1.560505 ATGTGGCCCACCTTTCATTC 58.439 50.000 12.25 0.00 36.63 2.67
422 443 2.042979 AGTATGTGGCCCACCTTTCATT 59.957 45.455 12.25 0.00 36.63 2.57
423 444 1.640670 AGTATGTGGCCCACCTTTCAT 59.359 47.619 12.25 0.00 36.63 2.57
424 445 1.072266 AGTATGTGGCCCACCTTTCA 58.928 50.000 12.25 0.00 36.63 2.69
425 446 3.359695 TTAGTATGTGGCCCACCTTTC 57.640 47.619 12.25 0.00 36.63 2.62
426 447 3.818295 TTTAGTATGTGGCCCACCTTT 57.182 42.857 12.25 0.00 36.63 3.11
427 448 3.818295 TTTTAGTATGTGGCCCACCTT 57.182 42.857 12.25 1.15 36.63 3.50
428 449 3.818295 TTTTTAGTATGTGGCCCACCT 57.182 42.857 12.25 3.78 36.63 4.00
473 494 8.614814 ACCCATCTTATAGCCAACATGTATAAT 58.385 33.333 0.00 0.00 0.00 1.28
474 495 7.984475 ACCCATCTTATAGCCAACATGTATAA 58.016 34.615 0.00 0.00 0.00 0.98
475 496 7.568128 ACCCATCTTATAGCCAACATGTATA 57.432 36.000 0.00 0.00 0.00 1.47
476 497 6.454223 ACCCATCTTATAGCCAACATGTAT 57.546 37.500 0.00 0.00 0.00 2.29
477 498 5.904984 ACCCATCTTATAGCCAACATGTA 57.095 39.130 0.00 0.00 0.00 2.29
478 499 4.796110 ACCCATCTTATAGCCAACATGT 57.204 40.909 0.00 0.00 0.00 3.21
479 500 4.889409 ACAACCCATCTTATAGCCAACATG 59.111 41.667 0.00 0.00 0.00 3.21
480 501 4.889409 CACAACCCATCTTATAGCCAACAT 59.111 41.667 0.00 0.00 0.00 2.71
481 502 4.269183 CACAACCCATCTTATAGCCAACA 58.731 43.478 0.00 0.00 0.00 3.33
482 503 3.632145 CCACAACCCATCTTATAGCCAAC 59.368 47.826 0.00 0.00 0.00 3.77
483 504 3.525609 TCCACAACCCATCTTATAGCCAA 59.474 43.478 0.00 0.00 0.00 4.52
484 505 3.119319 TCCACAACCCATCTTATAGCCA 58.881 45.455 0.00 0.00 0.00 4.75
485 506 3.857157 TCCACAACCCATCTTATAGCC 57.143 47.619 0.00 0.00 0.00 3.93
486 507 4.757149 GTCATCCACAACCCATCTTATAGC 59.243 45.833 0.00 0.00 0.00 2.97
487 508 5.928976 TGTCATCCACAACCCATCTTATAG 58.071 41.667 0.00 0.00 29.30 1.31
488 509 5.966853 TGTCATCCACAACCCATCTTATA 57.033 39.130 0.00 0.00 29.30 0.98
489 510 4.860802 TGTCATCCACAACCCATCTTAT 57.139 40.909 0.00 0.00 29.30 1.73
490 511 4.227073 TCATGTCATCCACAACCCATCTTA 59.773 41.667 0.00 0.00 38.97 2.10
491 512 3.010472 TCATGTCATCCACAACCCATCTT 59.990 43.478 0.00 0.00 38.97 2.40
492 513 2.577563 TCATGTCATCCACAACCCATCT 59.422 45.455 0.00 0.00 38.97 2.90
493 514 2.684881 GTCATGTCATCCACAACCCATC 59.315 50.000 0.00 0.00 38.97 3.51
494 515 2.041485 TGTCATGTCATCCACAACCCAT 59.959 45.455 0.00 0.00 38.97 4.00
495 516 1.423161 TGTCATGTCATCCACAACCCA 59.577 47.619 0.00 0.00 38.97 4.51
496 517 2.198827 TGTCATGTCATCCACAACCC 57.801 50.000 0.00 0.00 38.97 4.11
497 518 4.201950 GCTATTGTCATGTCATCCACAACC 60.202 45.833 8.44 0.16 38.97 3.77
498 519 4.637534 AGCTATTGTCATGTCATCCACAAC 59.362 41.667 8.44 0.00 38.97 3.32
499 520 4.847198 AGCTATTGTCATGTCATCCACAA 58.153 39.130 8.63 8.63 38.97 3.33
500 521 4.492494 AGCTATTGTCATGTCATCCACA 57.508 40.909 0.00 0.00 40.18 4.17
501 522 7.875041 ACTATAAGCTATTGTCATGTCATCCAC 59.125 37.037 0.00 0.00 0.00 4.02
502 523 7.966812 ACTATAAGCTATTGTCATGTCATCCA 58.033 34.615 0.00 0.00 0.00 3.41
503 524 8.090831 TGACTATAAGCTATTGTCATGTCATCC 58.909 37.037 12.62 0.00 42.84 3.51
504 525 9.138062 CTGACTATAAGCTATTGTCATGTCATC 57.862 37.037 15.15 0.00 45.18 2.92
505 526 7.601886 GCTGACTATAAGCTATTGTCATGTCAT 59.398 37.037 15.15 0.00 45.18 3.06
506 527 6.925718 GCTGACTATAAGCTATTGTCATGTCA 59.074 38.462 15.15 9.09 45.18 3.58
507 528 6.925718 TGCTGACTATAAGCTATTGTCATGTC 59.074 38.462 15.15 10.74 45.18 3.06
508 529 6.820335 TGCTGACTATAAGCTATTGTCATGT 58.180 36.000 15.15 0.00 45.18 3.21
509 530 6.128607 GCTGCTGACTATAAGCTATTGTCATG 60.129 42.308 15.15 12.06 45.18 3.07
510 531 5.931146 GCTGCTGACTATAAGCTATTGTCAT 59.069 40.000 15.15 0.00 45.18 3.06
511 532 5.069648 AGCTGCTGACTATAAGCTATTGTCA 59.930 40.000 0.00 14.50 44.00 3.58
512 533 5.404968 CAGCTGCTGACTATAAGCTATTGTC 59.595 44.000 24.88 0.00 44.00 3.18
513 534 5.295950 CAGCTGCTGACTATAAGCTATTGT 58.704 41.667 24.88 0.00 44.00 2.71
514 535 4.689812 CCAGCTGCTGACTATAAGCTATTG 59.310 45.833 30.10 4.88 44.00 1.90
515 536 4.802248 GCCAGCTGCTGACTATAAGCTATT 60.802 45.833 30.10 0.00 44.00 1.73
516 537 3.306641 GCCAGCTGCTGACTATAAGCTAT 60.307 47.826 30.10 0.00 44.00 2.97
517 538 2.036475 GCCAGCTGCTGACTATAAGCTA 59.964 50.000 30.10 0.00 44.00 3.32
518 539 1.202627 GCCAGCTGCTGACTATAAGCT 60.203 52.381 30.10 0.00 46.70 3.74
519 540 1.224965 GCCAGCTGCTGACTATAAGC 58.775 55.000 30.10 18.50 41.22 3.09
530 551 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
531 552 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
532 553 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
533 554 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
534 555 6.701340 TGAGCATGGTTAATAGTATAGCCAG 58.299 40.000 0.00 2.11 39.18 4.85
535 556 6.680148 TGAGCATGGTTAATAGTATAGCCA 57.320 37.500 0.00 3.65 39.96 4.75
536 557 7.979444 TTTGAGCATGGTTAATAGTATAGCC 57.021 36.000 2.71 0.00 0.00 3.93
607 646 1.781555 CGTTGACGTCCATGTGAGC 59.218 57.895 14.12 0.00 34.11 4.26
646 685 4.394729 TGGTTAAATCTCACTCAACACCC 58.605 43.478 0.00 0.00 0.00 4.61
654 693 4.094830 ACGGGTTTGGTTAAATCTCACT 57.905 40.909 0.00 0.00 0.00 3.41
655 694 4.756135 TGTACGGGTTTGGTTAAATCTCAC 59.244 41.667 0.00 0.00 0.00 3.51
662 701 4.396166 TCGTTTTTGTACGGGTTTGGTTAA 59.604 37.500 0.00 0.00 41.67 2.01
671 710 9.882098 AAAAACTCACACTCGTTTTTGTACGGG 62.882 40.741 10.84 0.00 45.96 5.28
672 711 2.861935 ACTCACACTCGTTTTTGTACGG 59.138 45.455 0.00 0.00 41.67 4.02
673 712 4.509915 AACTCACACTCGTTTTTGTACG 57.490 40.909 0.00 0.00 42.68 3.67
739 803 8.625651 TCGTTGAGAAAAGATTTTGGTCAATAA 58.374 29.630 12.26 5.25 34.69 1.40
740 804 8.160521 TCGTTGAGAAAAGATTTTGGTCAATA 57.839 30.769 12.26 5.46 34.69 1.90
756 820 7.737972 TCTGGATATTTTGTTTCGTTGAGAA 57.262 32.000 0.00 0.00 37.01 2.87
934 1024 0.770499 TTTGATCCACTGGCCTGTGA 59.230 50.000 36.45 24.58 40.12 3.58
939 1029 1.467920 CTCCTTTTGATCCACTGGCC 58.532 55.000 0.00 0.00 0.00 5.36
940 1030 0.813821 GCTCCTTTTGATCCACTGGC 59.186 55.000 0.00 0.00 0.00 4.85
947 1042 2.015587 CCTGCTCTGCTCCTTTTGATC 58.984 52.381 0.00 0.00 0.00 2.92
962 1057 2.758327 TGATCGGTACCGCCTGCT 60.758 61.111 29.64 10.83 39.59 4.24
963 1058 2.585247 GTGATCGGTACCGCCTGC 60.585 66.667 29.64 17.23 39.59 4.85
964 1059 1.065928 GAGTGATCGGTACCGCCTG 59.934 63.158 29.64 3.52 39.59 4.85
965 1060 2.125961 GGAGTGATCGGTACCGCCT 61.126 63.158 29.64 20.17 39.59 5.52
966 1061 2.416260 GGAGTGATCGGTACCGCC 59.584 66.667 29.64 22.06 39.59 6.13
971 1066 2.767445 CGCCGTGGAGTGATCGGTA 61.767 63.158 0.00 0.00 45.11 4.02
1037 1132 3.996744 CTCGTCTCGTCGAACGCCC 62.997 68.421 18.68 0.00 42.21 6.13
1149 1244 1.811266 CACGGTGAAGCGATGAGGG 60.811 63.158 9.13 0.00 0.00 4.30
1389 1499 0.824759 GGTCGAGGTTGCTCTGGTAT 59.175 55.000 0.00 0.00 0.00 2.73
1450 1560 2.202987 CTCCGGCAGCATCTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
2158 2322 3.598019 TCAAAATTCAGAAGGCATGGC 57.402 42.857 12.14 12.14 0.00 4.40
2216 2381 7.864307 TTTGTTTTGTTTTGCTTTTGAATGG 57.136 28.000 0.00 0.00 0.00 3.16
2236 2401 3.526534 CGACCCCAATGTTTTGTTTTGT 58.473 40.909 0.00 0.00 0.00 2.83
2237 2402 2.869192 CCGACCCCAATGTTTTGTTTTG 59.131 45.455 0.00 0.00 0.00 2.44
2238 2403 2.502130 ACCGACCCCAATGTTTTGTTTT 59.498 40.909 0.00 0.00 0.00 2.43
2239 2404 2.112190 ACCGACCCCAATGTTTTGTTT 58.888 42.857 0.00 0.00 0.00 2.83
2240 2405 1.783071 ACCGACCCCAATGTTTTGTT 58.217 45.000 0.00 0.00 0.00 2.83
2241 2406 2.660670 TACCGACCCCAATGTTTTGT 57.339 45.000 0.00 0.00 0.00 2.83
2247 2412 2.616842 GTTAAGCATACCGACCCCAATG 59.383 50.000 0.00 0.00 0.00 2.82
2261 2426 2.413837 GAAACGAGGCTCAGTTAAGCA 58.586 47.619 19.67 0.00 44.35 3.91
2284 2449 1.142748 CTCTTTCTGGCCGATCGCT 59.857 57.895 10.32 0.00 37.74 4.93
2380 2545 1.524621 AGTGTGGCTGTGTGAGTGC 60.525 57.895 0.00 0.00 0.00 4.40
2435 2600 2.615912 GTCTGCAGACTGCTCAACTTTT 59.384 45.455 34.54 0.00 45.31 2.27
2538 2706 3.623060 ACTTTTGCGATGCTATTCGACAT 59.377 39.130 8.18 0.00 41.62 3.06
2539 2707 3.000041 ACTTTTGCGATGCTATTCGACA 59.000 40.909 8.18 3.83 41.62 4.35
2587 2755 2.034812 GCACACTCCGATAACCCTAGAG 59.965 54.545 0.00 0.00 0.00 2.43
2589 2757 2.032620 AGCACACTCCGATAACCCTAG 58.967 52.381 0.00 0.00 0.00 3.02
2718 2886 0.478507 AAAGGTGAACCCTGGTGGAG 59.521 55.000 0.00 0.00 45.47 3.86
2811 2979 4.329545 AGTGCCACCGCCGACATT 62.330 61.111 0.00 0.00 0.00 2.71
2831 2999 9.834628 CGCTGAAATTTAAATTTTACTGAGGTA 57.165 29.630 23.44 5.49 38.64 3.08
2871 3039 1.001974 CCGGTGGACTGTTCATCAAGA 59.998 52.381 0.00 0.00 0.00 3.02
2873 3041 0.762418 ACCGGTGGACTGTTCATCAA 59.238 50.000 6.12 0.00 0.00 2.57
2962 3130 1.655959 CGCCGTTTTGTTGGTTCCG 60.656 57.895 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.