Multiple sequence alignment - TraesCS2D01G036600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G036600 chr2D 100.000 3086 0 0 1 3086 13725245 13722160 0.000000e+00 5699.0
1 TraesCS2D01G036600 chr2D 95.926 761 30 1 1 760 13749002 13748242 0.000000e+00 1232.0
2 TraesCS2D01G036600 chr2D 87.512 1073 89 19 999 2050 13770195 13771243 0.000000e+00 1197.0
3 TraesCS2D01G036600 chr2D 94.205 742 37 6 1 738 644920656 644921395 0.000000e+00 1127.0
4 TraesCS2D01G036600 chr2D 77.106 843 143 35 1197 2016 589503411 589502596 2.820000e-120 442.0
5 TraesCS2D01G036600 chr2B 90.909 1672 84 27 788 2424 24988870 24987232 0.000000e+00 2183.0
6 TraesCS2D01G036600 chr2B 87.896 1041 90 18 1022 2050 25069196 25070212 0.000000e+00 1192.0
7 TraesCS2D01G036600 chr2B 84.638 345 25 10 2408 2750 24986558 24986240 4.970000e-83 318.0
8 TraesCS2D01G036600 chr2B 85.950 121 11 4 2783 2902 24986105 24985990 1.160000e-24 124.0
9 TraesCS2D01G036600 chr2A 93.146 1459 62 15 788 2209 15756213 15757670 0.000000e+00 2106.0
10 TraesCS2D01G036600 chr2A 87.723 1067 92 14 999 2050 15959787 15960829 0.000000e+00 1208.0
11 TraesCS2D01G036600 chr2A 84.483 290 29 4 2319 2608 15757827 15758100 3.920000e-69 272.0
12 TraesCS2D01G036600 chr7D 95.946 740 27 2 1 737 607974595 607973856 0.000000e+00 1197.0
13 TraesCS2D01G036600 chr7D 94.730 740 36 3 1 739 528577401 528576664 0.000000e+00 1147.0
14 TraesCS2D01G036600 chr7D 80.331 1027 152 30 1034 2026 48824879 48823869 0.000000e+00 732.0
15 TraesCS2D01G036600 chr5D 95.664 738 30 2 1 736 496923086 496923823 0.000000e+00 1184.0
16 TraesCS2D01G036600 chr5D 78.381 1050 142 48 998 2018 560224882 560225875 1.220000e-168 603.0
17 TraesCS2D01G036600 chr5D 98.026 152 3 0 2935 3086 464642700 464642851 6.560000e-67 265.0
18 TraesCS2D01G036600 chr3D 95.122 738 32 4 1 736 591152510 591153245 0.000000e+00 1160.0
19 TraesCS2D01G036600 chr3D 94.595 740 35 4 1 739 416934812 416934077 0.000000e+00 1140.0
20 TraesCS2D01G036600 chr3D 80.920 1043 134 42 1034 2048 529496477 529495472 0.000000e+00 763.0
21 TraesCS2D01G036600 chr3D 78.393 722 135 15 1034 1746 557461299 557462008 1.690000e-122 449.0
22 TraesCS2D01G036600 chr6D 94.609 742 34 6 1 739 446735015 446734277 0.000000e+00 1144.0
23 TraesCS2D01G036600 chr1D 94.587 739 35 5 1 736 470896764 470897500 0.000000e+00 1138.0
24 TraesCS2D01G036600 chr3B 79.981 1059 136 44 998 2026 700234825 700235837 0.000000e+00 712.0
25 TraesCS2D01G036600 chr7A 79.714 1050 149 40 1034 2048 51662492 51661472 0.000000e+00 701.0
26 TraesCS2D01G036600 chr4A 77.778 819 135 31 1218 2013 684977314 684978108 7.800000e-126 460.0
27 TraesCS2D01G036600 chr4A 94.366 142 7 1 2944 3085 702161345 702161205 1.860000e-52 217.0
28 TraesCS2D01G036600 chr6A 78.302 106 21 2 1228 1332 563539578 563539682 1.990000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G036600 chr2D 13722160 13725245 3085 True 5699 5699 100.000000 1 3086 1 chr2D.!!$R1 3085
1 TraesCS2D01G036600 chr2D 13748242 13749002 760 True 1232 1232 95.926000 1 760 1 chr2D.!!$R2 759
2 TraesCS2D01G036600 chr2D 13770195 13771243 1048 False 1197 1197 87.512000 999 2050 1 chr2D.!!$F1 1051
3 TraesCS2D01G036600 chr2D 644920656 644921395 739 False 1127 1127 94.205000 1 738 1 chr2D.!!$F2 737
4 TraesCS2D01G036600 chr2D 589502596 589503411 815 True 442 442 77.106000 1197 2016 1 chr2D.!!$R3 819
5 TraesCS2D01G036600 chr2B 25069196 25070212 1016 False 1192 1192 87.896000 1022 2050 1 chr2B.!!$F1 1028
6 TraesCS2D01G036600 chr2B 24985990 24988870 2880 True 875 2183 87.165667 788 2902 3 chr2B.!!$R1 2114
7 TraesCS2D01G036600 chr2A 15959787 15960829 1042 False 1208 1208 87.723000 999 2050 1 chr2A.!!$F1 1051
8 TraesCS2D01G036600 chr2A 15756213 15758100 1887 False 1189 2106 88.814500 788 2608 2 chr2A.!!$F2 1820
9 TraesCS2D01G036600 chr7D 607973856 607974595 739 True 1197 1197 95.946000 1 737 1 chr7D.!!$R3 736
10 TraesCS2D01G036600 chr7D 528576664 528577401 737 True 1147 1147 94.730000 1 739 1 chr7D.!!$R2 738
11 TraesCS2D01G036600 chr7D 48823869 48824879 1010 True 732 732 80.331000 1034 2026 1 chr7D.!!$R1 992
12 TraesCS2D01G036600 chr5D 496923086 496923823 737 False 1184 1184 95.664000 1 736 1 chr5D.!!$F2 735
13 TraesCS2D01G036600 chr5D 560224882 560225875 993 False 603 603 78.381000 998 2018 1 chr5D.!!$F3 1020
14 TraesCS2D01G036600 chr3D 591152510 591153245 735 False 1160 1160 95.122000 1 736 1 chr3D.!!$F2 735
15 TraesCS2D01G036600 chr3D 416934077 416934812 735 True 1140 1140 94.595000 1 739 1 chr3D.!!$R1 738
16 TraesCS2D01G036600 chr3D 529495472 529496477 1005 True 763 763 80.920000 1034 2048 1 chr3D.!!$R2 1014
17 TraesCS2D01G036600 chr3D 557461299 557462008 709 False 449 449 78.393000 1034 1746 1 chr3D.!!$F1 712
18 TraesCS2D01G036600 chr6D 446734277 446735015 738 True 1144 1144 94.609000 1 739 1 chr6D.!!$R1 738
19 TraesCS2D01G036600 chr1D 470896764 470897500 736 False 1138 1138 94.587000 1 736 1 chr1D.!!$F1 735
20 TraesCS2D01G036600 chr3B 700234825 700235837 1012 False 712 712 79.981000 998 2026 1 chr3B.!!$F1 1028
21 TraesCS2D01G036600 chr7A 51661472 51662492 1020 True 701 701 79.714000 1034 2048 1 chr7A.!!$R1 1014
22 TraesCS2D01G036600 chr4A 684977314 684978108 794 False 460 460 77.778000 1218 2013 1 chr4A.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 785 0.03759 AAATGCGCACTAACCCCTCA 59.962 50.0 14.9 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2204 1.153349 GGGGCTTCGGTGATGAGAC 60.153 63.158 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 9.725019 CATATATGGAGGCAGAAAATGTTACTA 57.275 33.333 4.68 0.00 0.00 1.82
207 212 5.127491 AGACACCAGATTTTACGTGGAAAA 58.873 37.500 0.00 0.00 35.17 2.29
240 245 2.622962 GGAAAAACCACGGGCCGAG 61.623 63.158 35.78 26.04 38.79 4.63
288 293 5.920193 ATCAAATGTGGGATACAACAAGG 57.080 39.130 0.00 0.00 43.77 3.61
507 512 1.630878 TCTTCCTCTTCTTCCCTTGCC 59.369 52.381 0.00 0.00 0.00 4.52
565 570 4.873259 TGAACTGATTTTCGTCACACTTGA 59.127 37.500 0.00 0.00 0.00 3.02
601 606 1.217942 GGAGGGTAAAGCATCCCCATT 59.782 52.381 1.48 0.00 44.40 3.16
604 609 2.519691 AGGGTAAAGCATCCCCATTCAT 59.480 45.455 0.00 0.00 44.40 2.57
625 630 6.990798 TCATTCATGTGCAAAGTCCAAAATA 58.009 32.000 0.00 0.00 0.00 1.40
729 736 2.374504 CAGCCCACATGAGGAGGATATT 59.625 50.000 11.19 0.00 0.00 1.28
730 737 3.059097 AGCCCACATGAGGAGGATATTT 58.941 45.455 11.19 0.00 0.00 1.40
760 767 1.340889 GCAGATGCTCCAACCAAACAA 59.659 47.619 0.00 0.00 38.21 2.83
761 768 2.224018 GCAGATGCTCCAACCAAACAAA 60.224 45.455 0.00 0.00 38.21 2.83
762 769 3.555586 GCAGATGCTCCAACCAAACAAAT 60.556 43.478 0.00 0.00 38.21 2.32
763 770 3.991773 CAGATGCTCCAACCAAACAAATG 59.008 43.478 0.00 0.00 0.00 2.32
764 771 2.237393 TGCTCCAACCAAACAAATGC 57.763 45.000 0.00 0.00 0.00 3.56
765 772 1.139163 GCTCCAACCAAACAAATGCG 58.861 50.000 0.00 0.00 0.00 4.73
766 773 1.139163 CTCCAACCAAACAAATGCGC 58.861 50.000 0.00 0.00 0.00 6.09
767 774 0.461548 TCCAACCAAACAAATGCGCA 59.538 45.000 14.96 14.96 0.00 6.09
768 775 0.581053 CCAACCAAACAAATGCGCAC 59.419 50.000 14.90 0.00 0.00 5.34
769 776 1.569708 CAACCAAACAAATGCGCACT 58.430 45.000 14.90 0.00 0.00 4.40
770 777 2.544694 CCAACCAAACAAATGCGCACTA 60.545 45.455 14.90 0.00 0.00 2.74
771 778 3.119291 CAACCAAACAAATGCGCACTAA 58.881 40.909 14.90 0.00 0.00 2.24
772 779 2.738135 ACCAAACAAATGCGCACTAAC 58.262 42.857 14.90 0.00 0.00 2.34
773 780 2.058057 CCAAACAAATGCGCACTAACC 58.942 47.619 14.90 0.00 0.00 2.85
774 781 2.058057 CAAACAAATGCGCACTAACCC 58.942 47.619 14.90 0.00 0.00 4.11
775 782 0.601057 AACAAATGCGCACTAACCCC 59.399 50.000 14.90 0.00 0.00 4.95
776 783 0.251165 ACAAATGCGCACTAACCCCT 60.251 50.000 14.90 0.00 0.00 4.79
777 784 0.451783 CAAATGCGCACTAACCCCTC 59.548 55.000 14.90 0.00 0.00 4.30
778 785 0.037590 AAATGCGCACTAACCCCTCA 59.962 50.000 14.90 0.00 0.00 3.86
779 786 0.037590 AATGCGCACTAACCCCTCAA 59.962 50.000 14.90 0.00 0.00 3.02
780 787 0.392998 ATGCGCACTAACCCCTCAAG 60.393 55.000 14.90 0.00 0.00 3.02
781 788 1.295423 GCGCACTAACCCCTCAAGA 59.705 57.895 0.30 0.00 0.00 3.02
782 789 0.321298 GCGCACTAACCCCTCAAGAA 60.321 55.000 0.30 0.00 0.00 2.52
783 790 1.880646 GCGCACTAACCCCTCAAGAAA 60.881 52.381 0.30 0.00 0.00 2.52
784 791 2.500229 CGCACTAACCCCTCAAGAAAA 58.500 47.619 0.00 0.00 0.00 2.29
785 792 2.882137 CGCACTAACCCCTCAAGAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
821 829 6.852853 CGCACTATGTTTCAGGCTATTATTTG 59.147 38.462 0.00 0.00 0.00 2.32
869 877 5.393352 GCACAGAATCAATCATTTAGTGGCA 60.393 40.000 0.00 0.00 33.42 4.92
876 884 3.719268 ATCATTTAGTGGCAGGTGACA 57.281 42.857 0.00 0.00 0.00 3.58
905 930 4.391216 GCAGAATATATGTGCAGCCACTAG 59.609 45.833 13.16 0.00 42.54 2.57
923 952 5.503498 CACTAGACGTTCGATAAAGAGAGG 58.497 45.833 0.00 0.00 0.00 3.69
924 953 5.293814 CACTAGACGTTCGATAAAGAGAGGA 59.706 44.000 0.00 0.00 0.00 3.71
925 954 4.886247 AGACGTTCGATAAAGAGAGGAG 57.114 45.455 0.00 0.00 0.00 3.69
926 955 4.515361 AGACGTTCGATAAAGAGAGGAGA 58.485 43.478 0.00 0.00 0.00 3.71
927 956 4.573201 AGACGTTCGATAAAGAGAGGAGAG 59.427 45.833 0.00 0.00 0.00 3.20
928 957 4.515361 ACGTTCGATAAAGAGAGGAGAGA 58.485 43.478 0.00 0.00 0.00 3.10
929 958 4.573201 ACGTTCGATAAAGAGAGGAGAGAG 59.427 45.833 0.00 0.00 0.00 3.20
930 959 4.812091 CGTTCGATAAAGAGAGGAGAGAGA 59.188 45.833 0.00 0.00 0.00 3.10
1710 1792 1.079543 CTTCCTCACCGTGCTCCTG 60.080 63.158 0.00 0.00 0.00 3.86
1748 1830 0.945813 CTCCAGATACTCGTCGACCC 59.054 60.000 10.58 0.00 0.00 4.46
1979 2091 4.561731 GGTGATAGAGCCGATCGC 57.438 61.111 10.32 5.46 33.84 4.58
2052 2170 1.805945 GCGGCACTACAAGGTCTCG 60.806 63.158 0.00 0.00 0.00 4.04
2076 2194 1.600076 ACTCCAGCAGCAGCACTTG 60.600 57.895 3.17 0.00 45.49 3.16
2086 2204 1.020333 GCAGCACTTGAGGCTCTGAG 61.020 60.000 16.72 15.27 40.23 3.35
2095 2213 2.869233 GAGGCTCTGAGTCTCATCAC 57.131 55.000 29.21 6.78 45.89 3.06
2105 2228 1.306141 TCTCATCACCGAAGCCCCT 60.306 57.895 0.00 0.00 0.00 4.79
2116 2239 3.146847 CCGAAGCCCCTAAAATGTATCC 58.853 50.000 0.00 0.00 0.00 2.59
2124 2247 7.290813 AGCCCCTAAAATGTATCCTTTTCTAG 58.709 38.462 0.00 0.00 0.00 2.43
2125 2248 7.061054 GCCCCTAAAATGTATCCTTTTCTAGT 58.939 38.462 0.00 0.00 0.00 2.57
2126 2249 8.215736 GCCCCTAAAATGTATCCTTTTCTAGTA 58.784 37.037 0.00 0.00 0.00 1.82
2127 2250 9.557061 CCCCTAAAATGTATCCTTTTCTAGTAC 57.443 37.037 0.00 0.00 0.00 2.73
2141 2264 8.407064 CCTTTTCTAGTACTATCGAGTGTCAAT 58.593 37.037 2.33 0.00 36.28 2.57
2142 2265 9.790389 CTTTTCTAGTACTATCGAGTGTCAATT 57.210 33.333 2.33 0.00 36.28 2.32
2145 2268 8.070007 TCTAGTACTATCGAGTGTCAATTACG 57.930 38.462 2.33 0.00 36.28 3.18
2192 2328 2.024176 ACGAGGCGCAAACAGATAAT 57.976 45.000 10.83 0.00 0.00 1.28
2209 2345 4.712337 AGATAATCTGTCGGAGGTTTCACT 59.288 41.667 0.00 0.00 0.00 3.41
2219 2368 3.815401 CGGAGGTTTCACTCAAGTTTGAT 59.185 43.478 0.00 0.00 39.27 2.57
2291 2440 4.037446 TGTTTGAAATTCTGTTTCCTCGGG 59.963 41.667 0.00 0.00 0.00 5.14
2369 2585 3.819564 TCGATATGCTTAACACAGCCT 57.180 42.857 0.00 0.00 39.25 4.58
2370 2586 3.717707 TCGATATGCTTAACACAGCCTC 58.282 45.455 0.00 0.00 39.25 4.70
2371 2587 2.472861 CGATATGCTTAACACAGCCTCG 59.527 50.000 0.00 0.00 39.25 4.63
2372 2588 3.717707 GATATGCTTAACACAGCCTCGA 58.282 45.455 0.00 0.00 39.25 4.04
2439 3345 8.682936 AGAAGCATCAATCGGAGTTATAAAAT 57.317 30.769 0.00 0.00 0.00 1.82
2516 3422 2.422276 CCTTTCGGCAAAAGTTGAGG 57.578 50.000 9.24 0.00 42.46 3.86
2551 3457 4.974645 TTACCCTGTCTGATGAACAACT 57.025 40.909 0.00 0.00 0.00 3.16
2552 3458 6.042781 AGTTTACCCTGTCTGATGAACAACTA 59.957 38.462 0.00 0.00 0.00 2.24
2553 3459 4.543590 ACCCTGTCTGATGAACAACTAG 57.456 45.455 0.00 0.00 0.00 2.57
2554 3460 3.904339 ACCCTGTCTGATGAACAACTAGT 59.096 43.478 0.00 0.00 0.00 2.57
2555 3461 4.348168 ACCCTGTCTGATGAACAACTAGTT 59.652 41.667 1.12 1.12 44.93 2.24
2556 3462 4.692625 CCCTGTCTGATGAACAACTAGTTG 59.307 45.833 29.76 29.76 41.51 3.16
2557 3463 5.511373 CCCTGTCTGATGAACAACTAGTTGA 60.511 44.000 36.14 18.51 42.93 3.18
2558 3464 6.169094 CCTGTCTGATGAACAACTAGTTGAT 58.831 40.000 36.14 27.35 42.93 2.57
2559 3465 6.652481 CCTGTCTGATGAACAACTAGTTGATT 59.348 38.462 36.14 25.97 42.93 2.57
2560 3466 7.148507 CCTGTCTGATGAACAACTAGTTGATTC 60.149 40.741 36.14 30.52 42.93 2.52
2561 3467 7.445121 TGTCTGATGAACAACTAGTTGATTCT 58.555 34.615 36.14 22.86 42.93 2.40
2562 3468 7.600375 TGTCTGATGAACAACTAGTTGATTCTC 59.400 37.037 36.14 27.09 42.93 2.87
2563 3469 7.816995 GTCTGATGAACAACTAGTTGATTCTCT 59.183 37.037 36.14 23.98 42.93 3.10
2564 3470 8.370940 TCTGATGAACAACTAGTTGATTCTCTT 58.629 33.333 36.14 21.29 42.93 2.85
2565 3471 9.645059 CTGATGAACAACTAGTTGATTCTCTTA 57.355 33.333 36.14 20.16 42.93 2.10
2566 3472 9.424319 TGATGAACAACTAGTTGATTCTCTTAC 57.576 33.333 36.14 22.30 42.93 2.34
2567 3473 9.646427 GATGAACAACTAGTTGATTCTCTTACT 57.354 33.333 36.14 11.73 42.93 2.24
2615 3535 0.987294 AGTTGATCACCTGTGGGGAG 59.013 55.000 0.00 0.00 38.76 4.30
2711 3631 6.311690 GTGTATCTTCTAAAGTGGAGCAGTTC 59.688 42.308 0.00 0.00 0.00 3.01
2713 3633 4.887748 TCTTCTAAAGTGGAGCAGTTCTG 58.112 43.478 0.00 0.00 0.00 3.02
2727 3649 3.929610 GCAGTTCTGACATGGTCTCTAAC 59.070 47.826 3.84 0.00 33.15 2.34
2750 3672 7.742556 ACGTCCTAGTATTACCTCATTACTC 57.257 40.000 0.00 0.00 0.00 2.59
2751 3673 7.285566 ACGTCCTAGTATTACCTCATTACTCA 58.714 38.462 0.00 0.00 0.00 3.41
2753 3675 8.237949 CGTCCTAGTATTACCTCATTACTCATG 58.762 40.741 0.00 0.00 0.00 3.07
2754 3676 9.298250 GTCCTAGTATTACCTCATTACTCATGA 57.702 37.037 0.00 0.00 39.82 3.07
2767 3689 8.175925 TCATTACTCATGAGAGGTATCAAGAG 57.824 38.462 29.27 5.53 45.85 2.85
2770 3692 6.019656 ACTCATGAGAGGTATCAAGAGGTA 57.980 41.667 29.27 0.00 45.09 3.08
2771 3693 6.436027 ACTCATGAGAGGTATCAAGAGGTAA 58.564 40.000 29.27 0.00 45.09 2.85
2772 3694 6.549364 ACTCATGAGAGGTATCAAGAGGTAAG 59.451 42.308 29.27 0.00 45.09 2.34
2773 3695 6.673583 TCATGAGAGGTATCAAGAGGTAAGA 58.326 40.000 0.00 0.00 31.76 2.10
2774 3696 6.775142 TCATGAGAGGTATCAAGAGGTAAGAG 59.225 42.308 0.00 0.00 31.76 2.85
2775 3697 6.080969 TGAGAGGTATCAAGAGGTAAGAGT 57.919 41.667 0.00 0.00 0.00 3.24
2776 3698 7.209340 TGAGAGGTATCAAGAGGTAAGAGTA 57.791 40.000 0.00 0.00 0.00 2.59
2780 3702 8.725256 AGAGGTATCAAGAGGTAAGAGTACATA 58.275 37.037 0.00 0.00 31.21 2.29
2781 3703 9.352191 GAGGTATCAAGAGGTAAGAGTACATAA 57.648 37.037 0.00 0.00 31.21 1.90
2789 3813 8.694581 AGAGGTAAGAGTACATAATAGTGGAC 57.305 38.462 0.00 0.00 32.91 4.02
2794 3818 6.963083 AGAGTACATAATAGTGGACCTGAC 57.037 41.667 0.00 0.00 33.20 3.51
2804 3828 2.772515 AGTGGACCTGACTAATTAGCCC 59.227 50.000 12.54 5.56 0.00 5.19
2807 3831 3.785887 TGGACCTGACTAATTAGCCCAAT 59.214 43.478 12.54 2.77 0.00 3.16
2825 3849 6.485648 AGCCCAATGTAATTAATCCGTTCTAC 59.514 38.462 0.00 0.00 32.46 2.59
2826 3850 6.261381 GCCCAATGTAATTAATCCGTTCTACA 59.739 38.462 0.00 0.00 32.46 2.74
2838 3862 3.259625 TCCGTTCTACATTGTCACCATCA 59.740 43.478 0.00 0.00 0.00 3.07
2840 3864 5.128008 TCCGTTCTACATTGTCACCATCATA 59.872 40.000 0.00 0.00 0.00 2.15
2841 3865 5.991606 CCGTTCTACATTGTCACCATCATAT 59.008 40.000 0.00 0.00 0.00 1.78
2842 3866 6.146184 CCGTTCTACATTGTCACCATCATATC 59.854 42.308 0.00 0.00 0.00 1.63
2843 3867 6.146184 CGTTCTACATTGTCACCATCATATCC 59.854 42.308 0.00 0.00 0.00 2.59
2844 3868 7.220030 GTTCTACATTGTCACCATCATATCCT 58.780 38.462 0.00 0.00 0.00 3.24
2845 3869 6.997655 TCTACATTGTCACCATCATATCCTC 58.002 40.000 0.00 0.00 0.00 3.71
2892 3916 3.117512 GGAAAGGCTCCATCTCCCATAAA 60.118 47.826 0.00 0.00 44.67 1.40
2919 3943 9.924650 AAAAAGAAGAAGAAGAATCATTGGATG 57.075 29.630 0.00 0.00 32.92 3.51
2920 3944 8.874744 AAAGAAGAAGAAGAATCATTGGATGA 57.125 30.769 0.00 0.00 44.55 2.92
2931 3955 5.925506 ATCATTGGATGATCTGCAAAACA 57.074 34.783 0.00 0.00 46.62 2.83
2932 3956 5.925506 TCATTGGATGATCTGCAAAACAT 57.074 34.783 0.00 0.00 38.79 2.71
2933 3957 7.591421 ATCATTGGATGATCTGCAAAACATA 57.409 32.000 0.00 0.00 46.62 2.29
2934 3958 6.798482 TCATTGGATGATCTGCAAAACATAC 58.202 36.000 0.00 0.00 38.79 2.39
2935 3959 6.604396 TCATTGGATGATCTGCAAAACATACT 59.396 34.615 9.30 0.00 38.79 2.12
2936 3960 7.774625 TCATTGGATGATCTGCAAAACATACTA 59.225 33.333 9.30 3.97 38.79 1.82
2937 3961 7.558161 TTGGATGATCTGCAAAACATACTAG 57.442 36.000 9.30 0.00 31.53 2.57
2938 3962 5.528690 TGGATGATCTGCAAAACATACTAGC 59.471 40.000 9.30 0.00 0.00 3.42
2939 3963 5.762218 GGATGATCTGCAAAACATACTAGCT 59.238 40.000 0.00 0.00 0.00 3.32
2940 3964 6.261826 GGATGATCTGCAAAACATACTAGCTT 59.738 38.462 0.00 0.00 0.00 3.74
2941 3965 6.668541 TGATCTGCAAAACATACTAGCTTC 57.331 37.500 0.00 0.00 0.00 3.86
2942 3966 6.409704 TGATCTGCAAAACATACTAGCTTCT 58.590 36.000 0.00 0.00 0.00 2.85
2943 3967 6.536582 TGATCTGCAAAACATACTAGCTTCTC 59.463 38.462 0.00 0.00 0.00 2.87
2944 3968 6.042638 TCTGCAAAACATACTAGCTTCTCT 57.957 37.500 0.00 0.00 0.00 3.10
2945 3969 6.102663 TCTGCAAAACATACTAGCTTCTCTC 58.897 40.000 0.00 0.00 0.00 3.20
2946 3970 5.178797 TGCAAAACATACTAGCTTCTCTCC 58.821 41.667 0.00 0.00 0.00 3.71
2947 3971 5.046304 TGCAAAACATACTAGCTTCTCTCCT 60.046 40.000 0.00 0.00 0.00 3.69
2948 3972 5.522097 GCAAAACATACTAGCTTCTCTCCTC 59.478 44.000 0.00 0.00 0.00 3.71
2949 3973 5.862678 AAACATACTAGCTTCTCTCCTCC 57.137 43.478 0.00 0.00 0.00 4.30
2950 3974 3.839778 ACATACTAGCTTCTCTCCTCCC 58.160 50.000 0.00 0.00 0.00 4.30
2951 3975 3.161866 CATACTAGCTTCTCTCCTCCCC 58.838 54.545 0.00 0.00 0.00 4.81
2952 3976 1.314895 ACTAGCTTCTCTCCTCCCCT 58.685 55.000 0.00 0.00 0.00 4.79
2953 3977 1.216930 ACTAGCTTCTCTCCTCCCCTC 59.783 57.143 0.00 0.00 0.00 4.30
2954 3978 0.558712 TAGCTTCTCTCCTCCCCTCC 59.441 60.000 0.00 0.00 0.00 4.30
2955 3979 1.764454 GCTTCTCTCCTCCCCTCCC 60.764 68.421 0.00 0.00 0.00 4.30
2956 3980 1.074850 CTTCTCTCCTCCCCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
2957 3981 2.613576 CTTCTCTCCTCCCCTCCCCC 62.614 70.000 0.00 0.00 0.00 5.40
2958 3982 4.548513 CTCTCCTCCCCTCCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
3030 4054 4.168291 CCCGCCTTGCTCCTCCTC 62.168 72.222 0.00 0.00 0.00 3.71
3031 4055 3.080121 CCGCCTTGCTCCTCCTCT 61.080 66.667 0.00 0.00 0.00 3.69
3032 4056 2.498726 CGCCTTGCTCCTCCTCTC 59.501 66.667 0.00 0.00 0.00 3.20
3033 4057 2.057408 CGCCTTGCTCCTCCTCTCT 61.057 63.158 0.00 0.00 0.00 3.10
3034 4058 1.521616 GCCTTGCTCCTCCTCTCTG 59.478 63.158 0.00 0.00 0.00 3.35
3035 4059 1.970352 GCCTTGCTCCTCCTCTCTGG 61.970 65.000 0.00 0.00 37.10 3.86
3036 4060 1.521616 CTTGCTCCTCCTCTCTGGC 59.478 63.158 0.00 0.00 35.26 4.85
3037 4061 1.970352 CTTGCTCCTCCTCTCTGGCC 61.970 65.000 0.00 0.00 35.26 5.36
3038 4062 3.535962 GCTCCTCCTCTCTGGCCG 61.536 72.222 0.00 0.00 35.26 6.13
3039 4063 2.277072 CTCCTCCTCTCTGGCCGA 59.723 66.667 0.00 0.00 35.26 5.54
3040 4064 2.043852 TCCTCCTCTCTGGCCGAC 60.044 66.667 0.00 0.00 35.26 4.79
3041 4065 2.363018 CCTCCTCTCTGGCCGACA 60.363 66.667 0.00 0.00 35.26 4.35
3042 4066 1.760086 CCTCCTCTCTGGCCGACAT 60.760 63.158 0.00 0.00 35.26 3.06
3043 4067 1.440893 CTCCTCTCTGGCCGACATG 59.559 63.158 0.00 0.00 35.26 3.21
3044 4068 2.202987 CCTCTCTGGCCGACATGC 60.203 66.667 0.00 0.00 0.00 4.06
3045 4069 2.584418 CTCTCTGGCCGACATGCG 60.584 66.667 0.00 0.00 40.47 4.73
3046 4070 4.819761 TCTCTGGCCGACATGCGC 62.820 66.667 0.00 0.00 39.11 6.09
3047 4071 4.827087 CTCTGGCCGACATGCGCT 62.827 66.667 9.73 0.00 39.11 5.92
3048 4072 4.819761 TCTGGCCGACATGCGCTC 62.820 66.667 9.73 0.00 39.11 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 0.036022 GAGGAGTGTCTTGCCTGCTT 59.964 55.000 0.00 0.00 30.70 3.91
240 245 0.684479 GGAAGAGGATTTGGGTGGCC 60.684 60.000 0.00 0.00 0.00 5.36
393 398 2.778299 CTTCGGTTCCACCATCTTTGA 58.222 47.619 0.00 0.00 38.47 2.69
507 512 5.863965 AGAAGAAGAGAGAAAACCAAGAGG 58.136 41.667 0.00 0.00 42.21 3.69
565 570 0.110678 CTCCATCCAGCAGCCATCAT 59.889 55.000 0.00 0.00 0.00 2.45
601 606 4.933505 TTTGGACTTTGCACATGAATGA 57.066 36.364 0.00 0.00 0.00 2.57
604 609 5.988561 GGTTATTTTGGACTTTGCACATGAA 59.011 36.000 0.00 0.00 0.00 2.57
647 652 2.465813 AGGTGCAGAAGCTCACTATCT 58.534 47.619 3.58 0.00 42.74 1.98
729 736 3.216800 GGAGCATCTGCCATATGTTGAA 58.783 45.455 1.24 0.00 43.38 2.69
730 737 2.173143 TGGAGCATCTGCCATATGTTGA 59.827 45.455 1.24 0.00 43.38 3.18
760 767 0.037590 TTGAGGGGTTAGTGCGCATT 59.962 50.000 15.91 13.31 0.00 3.56
761 768 0.392998 CTTGAGGGGTTAGTGCGCAT 60.393 55.000 15.91 5.37 0.00 4.73
762 769 1.003839 CTTGAGGGGTTAGTGCGCA 60.004 57.895 5.66 5.66 0.00 6.09
763 770 0.321298 TTCTTGAGGGGTTAGTGCGC 60.321 55.000 0.00 0.00 0.00 6.09
764 771 2.178912 TTTCTTGAGGGGTTAGTGCG 57.821 50.000 0.00 0.00 0.00 5.34
785 792 5.521735 TGAAACATAGTGCGCATTTGTTTTT 59.478 32.000 31.00 19.89 39.77 1.94
786 793 5.046529 TGAAACATAGTGCGCATTTGTTTT 58.953 33.333 31.00 21.52 39.77 2.43
821 829 6.237306 GCAAACAAAAGCTAGCGAATATCAAC 60.237 38.462 9.55 0.00 0.00 3.18
869 877 2.116983 ATTCTGCTGCCGTGTCACCT 62.117 55.000 0.00 0.00 0.00 4.00
876 884 2.146342 GCACATATATTCTGCTGCCGT 58.854 47.619 0.00 0.00 0.00 5.68
905 930 4.571580 TCTCTCCTCTCTTTATCGAACGTC 59.428 45.833 0.00 0.00 0.00 4.34
923 952 1.816074 AGTGGAGTCGTGTCTCTCTC 58.184 55.000 0.00 0.00 35.11 3.20
924 953 1.883275 CAAGTGGAGTCGTGTCTCTCT 59.117 52.381 0.00 0.00 35.11 3.10
925 954 1.609555 ACAAGTGGAGTCGTGTCTCTC 59.390 52.381 0.00 0.00 35.11 3.20
926 955 1.338337 CACAAGTGGAGTCGTGTCTCT 59.662 52.381 0.00 0.00 35.11 3.10
927 956 1.772182 CACAAGTGGAGTCGTGTCTC 58.228 55.000 0.00 0.00 0.00 3.36
928 957 3.967886 CACAAGTGGAGTCGTGTCT 57.032 52.632 0.00 0.00 0.00 3.41
1244 1305 2.045926 CCACCTGGAAGAAGCCCG 60.046 66.667 0.00 0.00 37.39 6.13
2029 2147 1.221840 CCTTGTAGTGCCGCTGGAT 59.778 57.895 0.00 0.00 0.00 3.41
2076 2194 1.408702 GGTGATGAGACTCAGAGCCTC 59.591 57.143 11.52 6.80 0.00 4.70
2086 2204 1.153349 GGGGCTTCGGTGATGAGAC 60.153 63.158 0.00 0.00 0.00 3.36
2095 2213 3.146847 GGATACATTTTAGGGGCTTCGG 58.853 50.000 0.00 0.00 0.00 4.30
2116 2239 9.790389 AATTGACACTCGATAGTACTAGAAAAG 57.210 33.333 8.85 5.91 33.48 2.27
2124 2247 6.134730 CCTCGTAATTGACACTCGATAGTAC 58.865 44.000 0.00 0.00 33.48 2.73
2125 2248 5.819379 ACCTCGTAATTGACACTCGATAGTA 59.181 40.000 0.00 0.00 33.48 1.82
2126 2249 4.639310 ACCTCGTAATTGACACTCGATAGT 59.361 41.667 0.00 0.00 35.91 2.12
2127 2250 4.970611 CACCTCGTAATTGACACTCGATAG 59.029 45.833 0.00 0.00 0.00 2.08
2141 2264 3.953712 TTTGAGATCAGCACCTCGTAA 57.046 42.857 0.00 0.00 32.30 3.18
2142 2265 3.006430 TGTTTTGAGATCAGCACCTCGTA 59.994 43.478 0.00 0.00 32.30 3.43
2143 2266 2.224281 TGTTTTGAGATCAGCACCTCGT 60.224 45.455 0.00 0.00 32.30 4.18
2144 2267 2.416747 TGTTTTGAGATCAGCACCTCG 58.583 47.619 0.00 0.00 32.30 4.63
2145 2268 5.412594 TGTAATGTTTTGAGATCAGCACCTC 59.587 40.000 0.00 0.00 0.00 3.85
2192 2328 1.699730 TGAGTGAAACCTCCGACAGA 58.300 50.000 0.00 0.00 37.80 3.41
2198 2334 5.774498 AATCAAACTTGAGTGAAACCTCC 57.226 39.130 0.00 0.00 41.08 4.30
2202 2338 7.595311 ACCAAAAATCAAACTTGAGTGAAAC 57.405 32.000 0.00 0.00 41.08 2.78
2209 2345 8.457261 CCATTCAAAACCAAAAATCAAACTTGA 58.543 29.630 0.00 0.00 42.14 3.02
2291 2440 4.929211 ACAGAAAAGTTTGTGAAAACCTGC 59.071 37.500 7.82 0.00 35.27 4.85
2404 2620 5.334319 CGATTGATGCTTCTTACATTTGCA 58.666 37.500 0.88 0.00 38.05 4.08
2439 3345 5.664294 AAGTGATTGATTGGCATTAGCAA 57.336 34.783 0.00 0.00 44.61 3.91
2511 3417 1.352083 AACTAGTGCAGGCTCCTCAA 58.648 50.000 0.00 0.00 0.00 3.02
2516 3422 1.555533 AGGGTAAACTAGTGCAGGCTC 59.444 52.381 0.00 0.00 0.00 4.70
2626 3546 3.060473 GCCTTCTCGATCGGTTTTATTCG 60.060 47.826 16.41 0.00 0.00 3.34
2632 3552 1.270625 TGTTGCCTTCTCGATCGGTTT 60.271 47.619 16.41 0.00 0.00 3.27
2696 3616 4.318332 CATGTCAGAACTGCTCCACTTTA 58.682 43.478 0.00 0.00 0.00 1.85
2702 3622 1.277557 AGACCATGTCAGAACTGCTCC 59.722 52.381 0.00 0.00 34.60 4.70
2711 3631 2.755655 AGGACGTTAGAGACCATGTCAG 59.244 50.000 0.00 0.00 34.60 3.51
2713 3633 3.946558 ACTAGGACGTTAGAGACCATGTC 59.053 47.826 1.31 0.00 0.00 3.06
2727 3649 7.741027 TGAGTAATGAGGTAATACTAGGACG 57.259 40.000 0.00 0.00 30.33 4.79
2750 3672 6.549364 ACTCTTACCTCTTGATACCTCTCATG 59.451 42.308 0.00 0.00 0.00 3.07
2751 3673 6.678547 ACTCTTACCTCTTGATACCTCTCAT 58.321 40.000 0.00 0.00 0.00 2.90
2753 3675 7.055378 TGTACTCTTACCTCTTGATACCTCTC 58.945 42.308 0.00 0.00 0.00 3.20
2754 3676 6.971340 TGTACTCTTACCTCTTGATACCTCT 58.029 40.000 0.00 0.00 0.00 3.69
2755 3677 7.826918 ATGTACTCTTACCTCTTGATACCTC 57.173 40.000 0.00 0.00 0.00 3.85
2756 3678 9.884814 ATTATGTACTCTTACCTCTTGATACCT 57.115 33.333 0.00 0.00 0.00 3.08
2761 3683 9.132923 CCACTATTATGTACTCTTACCTCTTGA 57.867 37.037 0.00 0.00 0.00 3.02
2763 3685 9.134055 GTCCACTATTATGTACTCTTACCTCTT 57.866 37.037 0.00 0.00 0.00 2.85
2764 3686 7.724951 GGTCCACTATTATGTACTCTTACCTCT 59.275 40.741 0.00 0.00 0.00 3.69
2765 3687 7.724951 AGGTCCACTATTATGTACTCTTACCTC 59.275 40.741 0.00 0.00 0.00 3.85
2766 3688 7.506261 CAGGTCCACTATTATGTACTCTTACCT 59.494 40.741 0.00 0.00 0.00 3.08
2767 3689 7.504911 TCAGGTCCACTATTATGTACTCTTACC 59.495 40.741 0.00 0.00 0.00 2.85
2770 3692 7.126733 AGTCAGGTCCACTATTATGTACTCTT 58.873 38.462 0.00 0.00 0.00 2.85
2771 3693 6.674573 AGTCAGGTCCACTATTATGTACTCT 58.325 40.000 0.00 0.00 0.00 3.24
2772 3694 6.963083 AGTCAGGTCCACTATTATGTACTC 57.037 41.667 0.00 0.00 0.00 2.59
2773 3695 9.435570 AATTAGTCAGGTCCACTATTATGTACT 57.564 33.333 0.00 0.00 0.00 2.73
2776 3698 8.368668 GCTAATTAGTCAGGTCCACTATTATGT 58.631 37.037 13.91 0.00 0.00 2.29
2780 3702 5.071923 GGGCTAATTAGTCAGGTCCACTATT 59.928 44.000 18.42 0.00 0.00 1.73
2781 3703 4.593634 GGGCTAATTAGTCAGGTCCACTAT 59.406 45.833 18.42 0.00 0.00 2.12
2789 3813 7.823745 AATTACATTGGGCTAATTAGTCAGG 57.176 36.000 18.42 12.28 0.00 3.86
2794 3818 9.010029 ACGGATTAATTACATTGGGCTAATTAG 57.990 33.333 8.20 8.20 30.27 1.73
2807 3831 8.875803 GTGACAATGTAGAACGGATTAATTACA 58.124 33.333 0.00 0.00 0.00 2.41
2838 3862 2.769209 ACAGGAGCAACAGGAGGATAT 58.231 47.619 0.00 0.00 0.00 1.63
2840 3864 2.114616 CTACAGGAGCAACAGGAGGAT 58.885 52.381 0.00 0.00 0.00 3.24
2841 3865 1.077169 TCTACAGGAGCAACAGGAGGA 59.923 52.381 0.00 0.00 0.00 3.71
2842 3866 1.561643 TCTACAGGAGCAACAGGAGG 58.438 55.000 0.00 0.00 0.00 4.30
2843 3867 3.685139 TTTCTACAGGAGCAACAGGAG 57.315 47.619 0.00 0.00 0.00 3.69
2844 3868 5.338381 CCTTATTTCTACAGGAGCAACAGGA 60.338 44.000 0.00 0.00 0.00 3.86
2845 3869 4.878397 CCTTATTTCTACAGGAGCAACAGG 59.122 45.833 0.00 0.00 0.00 4.00
2910 3934 5.925506 ATGTTTTGCAGATCATCCAATGA 57.074 34.783 0.00 0.00 44.55 2.57
2911 3935 6.802608 AGTATGTTTTGCAGATCATCCAATG 58.197 36.000 4.20 0.00 0.00 2.82
2912 3936 7.255381 GCTAGTATGTTTTGCAGATCATCCAAT 60.255 37.037 4.20 0.00 0.00 3.16
2913 3937 6.038603 GCTAGTATGTTTTGCAGATCATCCAA 59.961 38.462 4.20 0.00 0.00 3.53
2914 3938 5.528690 GCTAGTATGTTTTGCAGATCATCCA 59.471 40.000 4.20 0.00 0.00 3.41
2915 3939 5.762218 AGCTAGTATGTTTTGCAGATCATCC 59.238 40.000 4.20 0.00 0.00 3.51
2916 3940 6.857777 AGCTAGTATGTTTTGCAGATCATC 57.142 37.500 4.20 0.00 0.00 2.92
2917 3941 7.052873 AGAAGCTAGTATGTTTTGCAGATCAT 58.947 34.615 6.12 6.12 0.00 2.45
2918 3942 6.409704 AGAAGCTAGTATGTTTTGCAGATCA 58.590 36.000 0.00 0.00 0.00 2.92
2919 3943 6.760770 AGAGAAGCTAGTATGTTTTGCAGATC 59.239 38.462 0.00 0.00 0.00 2.75
2920 3944 6.648192 AGAGAAGCTAGTATGTTTTGCAGAT 58.352 36.000 0.00 0.00 0.00 2.90
2921 3945 6.042638 AGAGAAGCTAGTATGTTTTGCAGA 57.957 37.500 0.00 0.00 0.00 4.26
2922 3946 5.293079 GGAGAGAAGCTAGTATGTTTTGCAG 59.707 44.000 0.00 0.00 0.00 4.41
2923 3947 5.046304 AGGAGAGAAGCTAGTATGTTTTGCA 60.046 40.000 0.00 0.00 0.00 4.08
2924 3948 5.423886 AGGAGAGAAGCTAGTATGTTTTGC 58.576 41.667 0.00 0.00 0.00 3.68
2925 3949 6.045955 GGAGGAGAGAAGCTAGTATGTTTTG 58.954 44.000 0.00 0.00 0.00 2.44
2926 3950 5.129650 GGGAGGAGAGAAGCTAGTATGTTTT 59.870 44.000 0.00 0.00 0.00 2.43
2927 3951 4.651962 GGGAGGAGAGAAGCTAGTATGTTT 59.348 45.833 0.00 0.00 0.00 2.83
2928 3952 4.219919 GGGAGGAGAGAAGCTAGTATGTT 58.780 47.826 0.00 0.00 0.00 2.71
2929 3953 3.437344 GGGGAGGAGAGAAGCTAGTATGT 60.437 52.174 0.00 0.00 0.00 2.29
2930 3954 3.161866 GGGGAGGAGAGAAGCTAGTATG 58.838 54.545 0.00 0.00 0.00 2.39
2931 3955 3.068237 AGGGGAGGAGAGAAGCTAGTAT 58.932 50.000 0.00 0.00 0.00 2.12
2932 3956 2.444010 GAGGGGAGGAGAGAAGCTAGTA 59.556 54.545 0.00 0.00 0.00 1.82
2933 3957 1.216930 GAGGGGAGGAGAGAAGCTAGT 59.783 57.143 0.00 0.00 0.00 2.57
2934 3958 1.480498 GGAGGGGAGGAGAGAAGCTAG 60.480 61.905 0.00 0.00 0.00 3.42
2935 3959 0.558712 GGAGGGGAGGAGAGAAGCTA 59.441 60.000 0.00 0.00 0.00 3.32
2936 3960 1.313129 GGAGGGGAGGAGAGAAGCT 59.687 63.158 0.00 0.00 0.00 3.74
2937 3961 1.764454 GGGAGGGGAGGAGAGAAGC 60.764 68.421 0.00 0.00 0.00 3.86
2938 3962 1.074850 GGGGAGGGGAGGAGAGAAG 60.075 68.421 0.00 0.00 0.00 2.85
2939 3963 2.647949 GGGGGAGGGGAGGAGAGAA 61.648 68.421 0.00 0.00 0.00 2.87
2940 3964 3.036959 GGGGGAGGGGAGGAGAGA 61.037 72.222 0.00 0.00 0.00 3.10
2941 3965 4.548513 CGGGGGAGGGGAGGAGAG 62.549 77.778 0.00 0.00 0.00 3.20
3013 4037 4.168291 GAGGAGGAGCAAGGCGGG 62.168 72.222 0.00 0.00 0.00 6.13
3014 4038 3.080121 AGAGGAGGAGCAAGGCGG 61.080 66.667 0.00 0.00 0.00 6.13
3015 4039 2.057408 AGAGAGGAGGAGCAAGGCG 61.057 63.158 0.00 0.00 0.00 5.52
3016 4040 1.521616 CAGAGAGGAGGAGCAAGGC 59.478 63.158 0.00 0.00 0.00 4.35
3017 4041 1.970352 GCCAGAGAGGAGGAGCAAGG 61.970 65.000 0.00 0.00 41.22 3.61
3018 4042 1.521616 GCCAGAGAGGAGGAGCAAG 59.478 63.158 0.00 0.00 41.22 4.01
3019 4043 1.992277 GGCCAGAGAGGAGGAGCAA 60.992 63.158 0.00 0.00 41.22 3.91
3020 4044 2.364842 GGCCAGAGAGGAGGAGCA 60.365 66.667 0.00 0.00 41.22 4.26
3021 4045 3.535962 CGGCCAGAGAGGAGGAGC 61.536 72.222 2.24 0.00 41.22 4.70
3022 4046 2.124693 GTCGGCCAGAGAGGAGGAG 61.125 68.421 2.24 0.00 41.22 3.69
3023 4047 2.043852 GTCGGCCAGAGAGGAGGA 60.044 66.667 2.24 0.00 41.22 3.71
3024 4048 1.760086 ATGTCGGCCAGAGAGGAGG 60.760 63.158 2.24 0.00 41.22 4.30
3025 4049 1.440893 CATGTCGGCCAGAGAGGAG 59.559 63.158 2.24 0.00 41.22 3.69
3026 4050 2.725312 GCATGTCGGCCAGAGAGGA 61.725 63.158 2.24 0.00 41.22 3.71
3027 4051 2.202987 GCATGTCGGCCAGAGAGG 60.203 66.667 2.24 2.62 41.84 3.69
3028 4052 2.584418 CGCATGTCGGCCAGAGAG 60.584 66.667 2.24 0.00 33.78 3.20
3029 4053 4.819761 GCGCATGTCGGCCAGAGA 62.820 66.667 0.30 0.00 38.94 3.10
3030 4054 4.827087 AGCGCATGTCGGCCAGAG 62.827 66.667 11.47 0.00 38.94 3.35
3031 4055 4.819761 GAGCGCATGTCGGCCAGA 62.820 66.667 11.47 0.00 38.94 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.