Multiple sequence alignment - TraesCS2D01G035200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G035200 chr2D 100.000 3536 0 0 1 3536 13507844 13511379 0.000000e+00 6530
1 TraesCS2D01G035200 chr2D 84.321 1435 191 26 1000 2410 13476035 13474611 0.000000e+00 1373
2 TraesCS2D01G035200 chr2D 82.181 1403 204 31 982 2365 630011229 630009854 0.000000e+00 1164
3 TraesCS2D01G035200 chr2D 81.263 1393 213 35 990 2365 2770650 2769289 0.000000e+00 1083
4 TraesCS2D01G035200 chr2B 92.866 1640 103 6 891 2516 24216921 24218560 0.000000e+00 2368
5 TraesCS2D01G035200 chr2B 84.577 1420 161 25 990 2384 24098695 24097309 0.000000e+00 1356
6 TraesCS2D01G035200 chr2B 84.368 1401 192 17 1000 2381 24110292 24108900 0.000000e+00 1349
7 TraesCS2D01G035200 chr2B 82.707 1463 207 33 950 2381 24124359 24125806 0.000000e+00 1258
8 TraesCS2D01G035200 chr2B 81.929 1400 215 26 982 2365 772982271 772980894 0.000000e+00 1149
9 TraesCS2D01G035200 chr2B 92.922 551 17 4 2717 3265 33469778 33470308 0.000000e+00 782
10 TraesCS2D01G035200 chr2B 88.694 628 57 4 951 1564 24215274 24215901 0.000000e+00 754
11 TraesCS2D01G035200 chr2B 89.008 373 22 6 440 811 24216553 24216907 9.010000e-121 444
12 TraesCS2D01G035200 chr2B 97.931 145 3 0 3392 3536 33470307 33470451 5.860000e-63 252
13 TraesCS2D01G035200 chr2B 89.262 149 10 3 2559 2702 24218575 24218722 7.800000e-42 182
14 TraesCS2D01G035200 chr2B 90.000 130 13 0 3264 3393 461013660 461013531 6.070000e-38 169
15 TraesCS2D01G035200 chr2A 91.511 1708 123 13 907 2600 15602362 15604061 0.000000e+00 2331
16 TraesCS2D01G035200 chr2A 84.233 1408 158 31 979 2376 15450036 15448683 0.000000e+00 1312
17 TraesCS2D01G035200 chr2A 83.770 1411 193 23 1000 2387 15467788 15466391 0.000000e+00 1304
18 TraesCS2D01G035200 chr2A 82.337 1523 218 34 982 2467 15460280 15458772 0.000000e+00 1275
19 TraesCS2D01G035200 chr2A 91.534 815 48 15 1 811 15601549 15602346 0.000000e+00 1103
20 TraesCS2D01G035200 chr2A 92.965 199 13 1 3046 3243 175032648 175032450 4.470000e-74 289
21 TraesCS2D01G035200 chr2A 95.862 145 6 0 3392 3536 613238504 613238648 5.900000e-58 235
22 TraesCS2D01G035200 chr5B 96.589 557 14 4 2711 3265 322284181 322284734 0.000000e+00 918
23 TraesCS2D01G035200 chr5B 91.236 445 29 6 1 442 690617764 690618201 6.530000e-167 597
24 TraesCS2D01G035200 chr5B 95.172 145 7 0 3392 3536 322284733 322284877 2.750000e-56 230
25 TraesCS2D01G035200 chr3B 96.745 553 14 3 2717 3265 7322844 7322292 0.000000e+00 918
26 TraesCS2D01G035200 chr3B 91.216 444 31 5 1 442 534220087 534219650 6.530000e-167 597
27 TraesCS2D01G035200 chr3B 97.931 145 3 0 3392 3536 7322293 7322149 5.860000e-63 252
28 TraesCS2D01G035200 chr5D 96.552 551 16 3 2717 3265 431173678 431174227 0.000000e+00 909
29 TraesCS2D01G035200 chr5D 97.183 142 3 1 3392 3533 431174226 431174366 4.560000e-59 239
30 TraesCS2D01G035200 chr4B 96.390 554 17 3 2714 3265 595720674 595721226 0.000000e+00 909
31 TraesCS2D01G035200 chr4B 90.315 444 35 5 1 442 377733376 377733813 3.060000e-160 575
32 TraesCS2D01G035200 chr4B 97.931 145 3 0 3392 3536 595721225 595721369 5.860000e-63 252
33 TraesCS2D01G035200 chr3D 97.132 523 12 3 2745 3265 376074174 376074695 0.000000e+00 880
34 TraesCS2D01G035200 chr3D 90.991 444 30 6 1 442 564987679 564987244 1.090000e-164 590
35 TraesCS2D01G035200 chr3D 97.241 145 4 0 3392 3536 376074694 376074838 2.730000e-61 246
36 TraesCS2D01G035200 chr6A 93.860 570 16 6 2715 3265 367762338 367762907 0.000000e+00 841
37 TraesCS2D01G035200 chr6A 97.241 145 4 0 3392 3536 367762906 367763050 2.730000e-61 246
38 TraesCS2D01G035200 chr5A 93.520 571 16 5 2715 3265 115993392 115993961 0.000000e+00 830
39 TraesCS2D01G035200 chr5A 96.552 145 5 0 3392 3536 115993960 115994104 1.270000e-59 241
40 TraesCS2D01G035200 chr1D 93.018 444 23 5 1 442 67204645 67204208 2.980000e-180 641
41 TraesCS2D01G035200 chr1B 91.071 448 27 9 1 442 338606989 338607429 8.450000e-166 593
42 TraesCS2D01G035200 chr1B 90.583 446 31 7 1 442 340329535 340329097 6.580000e-162 580
43 TraesCS2D01G035200 chr7D 90.766 444 33 5 1 442 76411010 76410573 1.410000e-163 586
44 TraesCS2D01G035200 chr7B 93.207 368 19 6 2717 3078 33412391 33412024 1.440000e-148 536
45 TraesCS2D01G035200 chr7B 86.364 110 14 1 3285 3393 652133371 652133262 6.200000e-23 119
46 TraesCS2D01G035200 chr7B 79.221 154 26 6 2968 3118 33412053 33411903 6.240000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G035200 chr2D 13507844 13511379 3535 False 6530.0 6530 100.0000 1 3536 1 chr2D.!!$F1 3535
1 TraesCS2D01G035200 chr2D 13474611 13476035 1424 True 1373.0 1373 84.3210 1000 2410 1 chr2D.!!$R2 1410
2 TraesCS2D01G035200 chr2D 630009854 630011229 1375 True 1164.0 1164 82.1810 982 2365 1 chr2D.!!$R3 1383
3 TraesCS2D01G035200 chr2D 2769289 2770650 1361 True 1083.0 1083 81.2630 990 2365 1 chr2D.!!$R1 1375
4 TraesCS2D01G035200 chr2B 24097309 24098695 1386 True 1356.0 1356 84.5770 990 2384 1 chr2B.!!$R1 1394
5 TraesCS2D01G035200 chr2B 24108900 24110292 1392 True 1349.0 1349 84.3680 1000 2381 1 chr2B.!!$R2 1381
6 TraesCS2D01G035200 chr2B 24124359 24125806 1447 False 1258.0 1258 82.7070 950 2381 1 chr2B.!!$F1 1431
7 TraesCS2D01G035200 chr2B 772980894 772982271 1377 True 1149.0 1149 81.9290 982 2365 1 chr2B.!!$R4 1383
8 TraesCS2D01G035200 chr2B 24215274 24218722 3448 False 937.0 2368 89.9575 440 2702 4 chr2B.!!$F2 2262
9 TraesCS2D01G035200 chr2B 33469778 33470451 673 False 517.0 782 95.4265 2717 3536 2 chr2B.!!$F3 819
10 TraesCS2D01G035200 chr2A 15601549 15604061 2512 False 1717.0 2331 91.5225 1 2600 2 chr2A.!!$F2 2599
11 TraesCS2D01G035200 chr2A 15448683 15450036 1353 True 1312.0 1312 84.2330 979 2376 1 chr2A.!!$R1 1397
12 TraesCS2D01G035200 chr2A 15466391 15467788 1397 True 1304.0 1304 83.7700 1000 2387 1 chr2A.!!$R3 1387
13 TraesCS2D01G035200 chr2A 15458772 15460280 1508 True 1275.0 1275 82.3370 982 2467 1 chr2A.!!$R2 1485
14 TraesCS2D01G035200 chr5B 322284181 322284877 696 False 574.0 918 95.8805 2711 3536 2 chr5B.!!$F2 825
15 TraesCS2D01G035200 chr3B 7322149 7322844 695 True 585.0 918 97.3380 2717 3536 2 chr3B.!!$R2 819
16 TraesCS2D01G035200 chr5D 431173678 431174366 688 False 574.0 909 96.8675 2717 3533 2 chr5D.!!$F1 816
17 TraesCS2D01G035200 chr4B 595720674 595721369 695 False 580.5 909 97.1605 2714 3536 2 chr4B.!!$F2 822
18 TraesCS2D01G035200 chr3D 376074174 376074838 664 False 563.0 880 97.1865 2745 3536 2 chr3D.!!$F1 791
19 TraesCS2D01G035200 chr6A 367762338 367763050 712 False 543.5 841 95.5505 2715 3536 2 chr6A.!!$F1 821
20 TraesCS2D01G035200 chr5A 115993392 115994104 712 False 535.5 830 95.0360 2715 3536 2 chr5A.!!$F1 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 902 0.249398 CTTCGTAGGACACCCCCAAG 59.751 60.0 0.0 0.0 34.66 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 4403 0.035534 ATACATCAACGGCAGGCACA 60.036 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.872771 ACTCGTTACAAAATTCACCACGT 59.127 39.130 0.00 0.00 0.00 4.49
34 35 5.176223 ACTCGTTACAAAATTCACCACGTAG 59.824 40.000 0.00 0.00 0.00 3.51
59 60 4.802563 GCGGAACACCACTAACTAAGATAC 59.197 45.833 0.00 0.00 0.00 2.24
63 64 6.985059 GGAACACCACTAACTAAGATACCATC 59.015 42.308 0.00 0.00 0.00 3.51
131 132 0.530650 GGCCGAGCGATTGATCTTGA 60.531 55.000 0.00 0.00 0.00 3.02
202 203 5.351948 TCAAATCCACCAACGATGATCTA 57.648 39.130 0.00 0.00 0.00 1.98
308 309 3.923017 AAAGACTGGCAATGTAAGCAC 57.077 42.857 0.00 0.00 0.00 4.40
327 328 2.841988 GAGCTCCGCCTCCTCCAT 60.842 66.667 0.87 0.00 0.00 3.41
328 329 1.531840 GAGCTCCGCCTCCTCCATA 60.532 63.158 0.87 0.00 0.00 2.74
371 372 1.323412 CCAGGAGGAGACTATGACCG 58.677 60.000 0.00 0.00 44.43 4.79
372 373 0.671251 CAGGAGGAGACTATGACCGC 59.329 60.000 0.00 0.00 44.43 5.68
373 374 0.820074 AGGAGGAGACTATGACCGCG 60.820 60.000 0.00 0.00 44.43 6.46
375 376 2.353607 GGAGACTATGACCGCGCG 60.354 66.667 25.67 25.67 0.00 6.86
376 377 2.408022 GAGACTATGACCGCGCGT 59.592 61.111 29.95 17.00 0.00 6.01
378 379 2.202570 GACTATGACCGCGCGTGT 60.203 61.111 29.95 25.05 0.00 4.49
379 380 2.505498 GACTATGACCGCGCGTGTG 61.505 63.158 29.95 16.31 0.00 3.82
390 391 2.357517 GCGTGTGGTCTGGTCTGG 60.358 66.667 0.00 0.00 0.00 3.86
391 392 2.343758 CGTGTGGTCTGGTCTGGG 59.656 66.667 0.00 0.00 0.00 4.45
392 393 2.032681 GTGTGGTCTGGTCTGGGC 59.967 66.667 0.00 0.00 0.00 5.36
393 394 2.122413 TGTGGTCTGGTCTGGGCT 60.122 61.111 0.00 0.00 0.00 5.19
395 396 2.607750 TGGTCTGGTCTGGGCTCC 60.608 66.667 0.00 0.00 0.00 4.70
396 397 2.607750 GGTCTGGTCTGGGCTCCA 60.608 66.667 0.00 0.00 0.00 3.86
397 398 2.665603 GTCTGGTCTGGGCTCCAC 59.334 66.667 0.00 0.00 0.00 4.02
398 399 2.607750 TCTGGTCTGGGCTCCACC 60.608 66.667 0.00 0.00 37.93 4.61
399 400 2.930019 CTGGTCTGGGCTCCACCA 60.930 66.667 4.47 4.47 42.05 4.17
400 401 3.249189 TGGTCTGGGCTCCACCAC 61.249 66.667 0.13 0.00 42.05 4.16
433 434 3.857052 CCGTACTAATGCTCTCCACAAA 58.143 45.455 0.00 0.00 0.00 2.83
442 443 2.694628 TGCTCTCCACAAAACTTGCATT 59.305 40.909 0.00 0.00 0.00 3.56
444 445 3.054878 CTCTCCACAAAACTTGCATTGC 58.945 45.455 0.46 0.46 0.00 3.56
470 471 3.262420 TCCTTATCGAAGCAGAGCAAAC 58.738 45.455 0.00 0.00 0.00 2.93
479 480 6.718388 TCGAAGCAGAGCAAACATTATTATG 58.282 36.000 0.00 0.00 37.79 1.90
485 486 9.736414 AGCAGAGCAAACATTATTATGATAGAT 57.264 29.630 0.00 0.00 35.65 1.98
544 546 3.264947 CATGCATGCTATACGTATGGCT 58.735 45.455 34.37 21.77 40.37 4.75
592 594 5.163513 GTTGAAGATCGAACCAAAATGCAT 58.836 37.500 0.00 0.00 0.00 3.96
611 613 1.518325 TCACGTCGTTGGATTGCAAT 58.482 45.000 12.83 12.83 0.00 3.56
623 625 2.222953 GGATTGCAATGTCGTACCGAAC 60.223 50.000 18.59 0.00 37.72 3.95
635 637 3.717350 GTACCGAACGAAATTGGACAG 57.283 47.619 0.00 0.00 0.00 3.51
692 694 3.636300 CAGGTTCCCAGAAAAATGTGTCA 59.364 43.478 0.00 0.00 0.00 3.58
709 711 2.829720 TGTCAGTATGTAGGGTGTGGTC 59.170 50.000 0.00 0.00 37.40 4.02
789 791 3.935828 GGAAAGCTGCGAGATCTTAACTT 59.064 43.478 0.00 0.00 0.00 2.66
800 802 2.770164 TCTTAACTTGCTCCTGCTCC 57.230 50.000 0.00 0.00 40.48 4.70
811 813 3.969976 TGCTCCTGCTCCCCATATATATC 59.030 47.826 0.00 0.00 40.48 1.63
812 814 3.326297 GCTCCTGCTCCCCATATATATCC 59.674 52.174 0.00 0.00 36.03 2.59
813 815 3.906846 CTCCTGCTCCCCATATATATCCC 59.093 52.174 0.00 0.00 0.00 3.85
814 816 3.277392 TCCTGCTCCCCATATATATCCCA 59.723 47.826 0.00 0.00 0.00 4.37
816 818 3.038280 TGCTCCCCATATATATCCCACG 58.962 50.000 0.00 0.00 0.00 4.94
817 819 3.305720 GCTCCCCATATATATCCCACGA 58.694 50.000 0.00 0.00 0.00 4.35
818 820 3.322254 GCTCCCCATATATATCCCACGAG 59.678 52.174 0.00 0.00 0.00 4.18
821 823 3.454447 CCCCATATATATCCCACGAGCAA 59.546 47.826 0.00 0.00 0.00 3.91
822 824 4.443457 CCCCATATATATCCCACGAGCAAG 60.443 50.000 0.00 0.00 0.00 4.01
823 825 4.443457 CCCATATATATCCCACGAGCAAGG 60.443 50.000 0.00 0.00 0.00 3.61
824 826 4.405680 CCATATATATCCCACGAGCAAGGA 59.594 45.833 0.00 0.00 0.00 3.36
825 827 5.104941 CCATATATATCCCACGAGCAAGGAA 60.105 44.000 0.00 0.00 32.26 3.36
826 828 4.974645 ATATATCCCACGAGCAAGGAAA 57.025 40.909 0.00 0.00 32.26 3.13
827 829 3.864789 ATATCCCACGAGCAAGGAAAT 57.135 42.857 0.00 0.00 32.26 2.17
828 830 1.755179 ATCCCACGAGCAAGGAAATG 58.245 50.000 0.00 0.00 32.26 2.32
829 831 0.960364 TCCCACGAGCAAGGAAATGC 60.960 55.000 0.00 0.00 46.78 3.56
837 839 1.544724 GCAAGGAAATGCTACACCCA 58.455 50.000 0.00 0.00 43.06 4.51
838 840 1.474077 GCAAGGAAATGCTACACCCAG 59.526 52.381 0.00 0.00 43.06 4.45
839 841 2.879756 GCAAGGAAATGCTACACCCAGA 60.880 50.000 0.00 0.00 43.06 3.86
840 842 3.420893 CAAGGAAATGCTACACCCAGAA 58.579 45.455 0.00 0.00 0.00 3.02
841 843 3.806949 AGGAAATGCTACACCCAGAAA 57.193 42.857 0.00 0.00 0.00 2.52
842 844 3.690460 AGGAAATGCTACACCCAGAAAG 58.310 45.455 0.00 0.00 0.00 2.62
843 845 2.164422 GGAAATGCTACACCCAGAAAGC 59.836 50.000 0.00 0.00 35.51 3.51
844 846 1.839424 AATGCTACACCCAGAAAGCC 58.161 50.000 0.00 0.00 33.99 4.35
845 847 0.995024 ATGCTACACCCAGAAAGCCT 59.005 50.000 0.00 0.00 33.99 4.58
846 848 0.771127 TGCTACACCCAGAAAGCCTT 59.229 50.000 0.00 0.00 33.99 4.35
847 849 1.982226 TGCTACACCCAGAAAGCCTTA 59.018 47.619 0.00 0.00 33.99 2.69
848 850 2.290071 TGCTACACCCAGAAAGCCTTAC 60.290 50.000 0.00 0.00 33.99 2.34
849 851 2.618053 CTACACCCAGAAAGCCTTACG 58.382 52.381 0.00 0.00 0.00 3.18
850 852 0.763035 ACACCCAGAAAGCCTTACGT 59.237 50.000 0.00 0.00 0.00 3.57
851 853 1.142262 ACACCCAGAAAGCCTTACGTT 59.858 47.619 0.00 0.00 0.00 3.99
852 854 1.535462 CACCCAGAAAGCCTTACGTTG 59.465 52.381 0.00 0.00 0.00 4.10
853 855 1.418637 ACCCAGAAAGCCTTACGTTGA 59.581 47.619 0.00 0.00 0.00 3.18
854 856 2.076863 CCCAGAAAGCCTTACGTTGAG 58.923 52.381 0.00 0.00 0.00 3.02
855 857 2.550208 CCCAGAAAGCCTTACGTTGAGT 60.550 50.000 0.00 0.00 0.00 3.41
856 858 3.139077 CCAGAAAGCCTTACGTTGAGTT 58.861 45.455 0.00 0.00 0.00 3.01
857 859 3.564225 CCAGAAAGCCTTACGTTGAGTTT 59.436 43.478 0.00 0.00 0.00 2.66
858 860 4.036380 CCAGAAAGCCTTACGTTGAGTTTT 59.964 41.667 0.00 0.00 0.00 2.43
859 861 5.237779 CCAGAAAGCCTTACGTTGAGTTTTA 59.762 40.000 0.00 0.00 0.00 1.52
860 862 6.072673 CCAGAAAGCCTTACGTTGAGTTTTAT 60.073 38.462 0.00 0.00 0.00 1.40
861 863 7.360361 CAGAAAGCCTTACGTTGAGTTTTATT 58.640 34.615 0.00 0.00 0.00 1.40
862 864 7.534239 CAGAAAGCCTTACGTTGAGTTTTATTC 59.466 37.037 0.00 0.00 0.00 1.75
863 865 6.870971 AAGCCTTACGTTGAGTTTTATTCA 57.129 33.333 0.00 0.00 0.00 2.57
864 866 7.448748 AAGCCTTACGTTGAGTTTTATTCAT 57.551 32.000 0.00 0.00 0.00 2.57
865 867 8.556213 AAGCCTTACGTTGAGTTTTATTCATA 57.444 30.769 0.00 0.00 0.00 2.15
866 868 8.556213 AGCCTTACGTTGAGTTTTATTCATAA 57.444 30.769 0.00 0.00 0.00 1.90
867 869 8.665685 AGCCTTACGTTGAGTTTTATTCATAAG 58.334 33.333 0.00 0.00 0.00 1.73
868 870 7.428472 GCCTTACGTTGAGTTTTATTCATAAGC 59.572 37.037 0.00 0.00 0.00 3.09
869 871 7.908601 CCTTACGTTGAGTTTTATTCATAAGCC 59.091 37.037 0.00 0.00 0.00 4.35
870 872 8.556213 TTACGTTGAGTTTTATTCATAAGCCT 57.444 30.769 0.00 0.00 0.00 4.58
871 873 7.448748 ACGTTGAGTTTTATTCATAAGCCTT 57.551 32.000 0.00 0.00 0.00 4.35
872 874 7.882179 ACGTTGAGTTTTATTCATAAGCCTTT 58.118 30.769 0.00 0.00 0.00 3.11
873 875 7.807907 ACGTTGAGTTTTATTCATAAGCCTTTG 59.192 33.333 0.00 0.00 0.00 2.77
874 876 7.807907 CGTTGAGTTTTATTCATAAGCCTTTGT 59.192 33.333 0.00 0.00 0.00 2.83
882 884 9.487442 TTTATTCATAAGCCTTTGTAAATCCCT 57.513 29.630 0.00 0.00 0.00 4.20
883 885 7.978099 ATTCATAAGCCTTTGTAAATCCCTT 57.022 32.000 0.00 0.00 0.00 3.95
884 886 7.404671 TTCATAAGCCTTTGTAAATCCCTTC 57.595 36.000 0.00 0.00 0.00 3.46
885 887 5.588648 TCATAAGCCTTTGTAAATCCCTTCG 59.411 40.000 0.00 0.00 0.00 3.79
886 888 3.434940 AGCCTTTGTAAATCCCTTCGT 57.565 42.857 0.00 0.00 0.00 3.85
887 889 4.563140 AGCCTTTGTAAATCCCTTCGTA 57.437 40.909 0.00 0.00 0.00 3.43
888 890 4.514401 AGCCTTTGTAAATCCCTTCGTAG 58.486 43.478 0.00 0.00 0.00 3.51
889 891 3.626217 GCCTTTGTAAATCCCTTCGTAGG 59.374 47.826 0.14 0.14 41.60 3.18
890 892 4.624604 GCCTTTGTAAATCCCTTCGTAGGA 60.625 45.833 10.07 1.22 45.05 2.94
891 893 4.874396 CCTTTGTAAATCCCTTCGTAGGAC 59.126 45.833 10.07 0.00 45.05 3.85
892 894 5.484715 CTTTGTAAATCCCTTCGTAGGACA 58.515 41.667 10.07 2.56 45.05 4.02
893 895 4.460948 TGTAAATCCCTTCGTAGGACAC 57.539 45.455 10.07 0.85 45.05 3.67
894 896 3.196254 TGTAAATCCCTTCGTAGGACACC 59.804 47.826 10.07 0.00 45.05 4.16
895 897 1.201424 AATCCCTTCGTAGGACACCC 58.799 55.000 10.07 0.00 45.05 4.61
896 898 0.690077 ATCCCTTCGTAGGACACCCC 60.690 60.000 10.07 0.00 45.05 4.95
897 899 2.364780 CCCTTCGTAGGACACCCCC 61.365 68.421 10.07 0.00 45.05 5.40
898 900 1.611261 CCTTCGTAGGACACCCCCA 60.611 63.158 0.98 0.00 45.05 4.96
899 901 1.196104 CCTTCGTAGGACACCCCCAA 61.196 60.000 0.98 0.00 45.05 4.12
900 902 0.249398 CTTCGTAGGACACCCCCAAG 59.751 60.000 0.00 0.00 34.66 3.61
901 903 1.833787 TTCGTAGGACACCCCCAAGC 61.834 60.000 0.00 0.00 34.66 4.01
902 904 2.675371 GTAGGACACCCCCAAGCC 59.325 66.667 0.00 0.00 34.66 4.35
903 905 2.208640 TAGGACACCCCCAAGCCA 59.791 61.111 0.00 0.00 34.66 4.75
904 906 2.228480 TAGGACACCCCCAAGCCAC 61.228 63.158 0.00 0.00 34.66 5.01
905 907 2.993038 TAGGACACCCCCAAGCCACA 62.993 60.000 0.00 0.00 34.66 4.17
1314 3036 2.496817 GGCCTCACGATCTCGCTT 59.503 61.111 0.00 0.00 44.43 4.68
1443 3175 4.760047 CTCAACGGGGTGCTCGGG 62.760 72.222 0.00 0.00 0.00 5.14
1539 3271 0.603707 CCATGTCGCTCAACCACTGT 60.604 55.000 0.00 0.00 0.00 3.55
1935 3688 2.108157 GGATGCCGGACACGCATA 59.892 61.111 5.05 0.00 37.12 3.14
2013 3766 2.833582 GTCGGCGAGATCCTGGGA 60.834 66.667 11.20 0.00 0.00 4.37
2122 3875 2.361230 CCCGAAACCCCAGCTTCC 60.361 66.667 0.00 0.00 0.00 3.46
2170 3929 2.046988 CGGTGCTGGTGATGAGCA 60.047 61.111 0.00 0.00 44.22 4.26
2336 4095 2.182791 CGCTCCTGATGTGCTCGT 59.817 61.111 0.00 0.00 0.00 4.18
2367 4126 1.667154 CCGACGAAGAGCTGATGGGA 61.667 60.000 0.00 0.00 0.00 4.37
2458 4229 2.224475 GGAGGCATGCATCAGTCATACT 60.224 50.000 31.07 9.94 0.00 2.12
2468 4239 6.739112 TGCATCAGTCATACTCATACAGTAC 58.261 40.000 0.00 0.00 40.60 2.73
2500 4279 2.735772 ATGCCTGAGCCCCAGTACG 61.736 63.158 3.45 0.00 41.33 3.67
2516 4295 5.293569 CCCAGTACGAGAACCAAATAATGTC 59.706 44.000 0.00 0.00 0.00 3.06
2521 4300 2.080693 AGAACCAAATAATGTCGCGCA 58.919 42.857 8.75 2.86 0.00 6.09
2532 4311 1.014044 TGTCGCGCAAGATGGAAGTC 61.014 55.000 8.75 0.00 43.02 3.01
2536 4315 1.202302 CGCGCAAGATGGAAGTCTAGA 60.202 52.381 8.75 0.00 43.02 2.43
2539 4318 3.062774 GCGCAAGATGGAAGTCTAGAAAC 59.937 47.826 0.30 0.00 43.02 2.78
2543 4322 5.517054 GCAAGATGGAAGTCTAGAAACGTAG 59.483 44.000 0.00 0.00 0.00 3.51
2544 4323 5.838531 AGATGGAAGTCTAGAAACGTAGG 57.161 43.478 0.00 0.00 0.00 3.18
2546 4325 5.591067 AGATGGAAGTCTAGAAACGTAGGAG 59.409 44.000 0.00 0.00 0.00 3.69
2547 4326 4.015084 TGGAAGTCTAGAAACGTAGGAGG 58.985 47.826 0.00 0.00 0.00 4.30
2548 4327 4.015764 GGAAGTCTAGAAACGTAGGAGGT 58.984 47.826 0.00 0.00 0.00 3.85
2549 4328 5.189180 GGAAGTCTAGAAACGTAGGAGGTA 58.811 45.833 0.00 0.00 0.00 3.08
2550 4329 5.065859 GGAAGTCTAGAAACGTAGGAGGTAC 59.934 48.000 0.00 0.00 0.00 3.34
2551 4330 4.522114 AGTCTAGAAACGTAGGAGGTACC 58.478 47.826 2.73 2.73 39.35 3.34
2552 4331 4.018960 AGTCTAGAAACGTAGGAGGTACCA 60.019 45.833 15.94 0.00 42.04 3.25
2553 4332 4.095632 GTCTAGAAACGTAGGAGGTACCAC 59.904 50.000 15.94 7.91 42.04 4.16
2554 4333 2.174360 AGAAACGTAGGAGGTACCACC 58.826 52.381 19.95 19.95 42.04 4.61
2555 4334 1.895131 GAAACGTAGGAGGTACCACCA 59.105 52.381 27.70 12.71 41.95 4.17
2556 4335 1.260544 AACGTAGGAGGTACCACCAC 58.739 55.000 27.70 20.95 41.95 4.16
2615 4394 7.035840 CATTGGAGCAATGCTATTCTTTACT 57.964 36.000 8.12 0.00 43.38 2.24
2624 4403 7.656948 GCAATGCTATTCTTTACTCTGAGATCT 59.343 37.037 12.44 0.00 0.00 2.75
2630 4409 4.348486 TCTTTACTCTGAGATCTGTGCCT 58.652 43.478 12.44 0.00 0.00 4.75
2632 4411 0.536260 ACTCTGAGATCTGTGCCTGC 59.464 55.000 12.44 0.00 0.00 4.85
2652 4431 4.518249 TGCCGTTGATGTATTATTGGTGA 58.482 39.130 0.00 0.00 0.00 4.02
2660 4439 9.935682 GTTGATGTATTATTGGTGATGTACTTG 57.064 33.333 0.00 0.00 0.00 3.16
2685 4469 7.040478 TGAGTACTTTTATGAGCAAGCAACATT 60.040 33.333 0.00 0.00 0.00 2.71
2702 4486 0.551131 ATTGAGGGAGTGAAGGGCCT 60.551 55.000 0.00 0.00 0.00 5.19
2703 4487 1.492133 TTGAGGGAGTGAAGGGCCTG 61.492 60.000 6.92 0.00 0.00 4.85
2704 4488 1.920835 GAGGGAGTGAAGGGCCTGT 60.921 63.158 6.92 0.00 0.00 4.00
2705 4489 2.190488 GAGGGAGTGAAGGGCCTGTG 62.190 65.000 6.92 0.00 0.00 3.66
2706 4490 2.352805 GGAGTGAAGGGCCTGTGG 59.647 66.667 6.92 0.00 0.00 4.17
2707 4491 2.224159 GGAGTGAAGGGCCTGTGGA 61.224 63.158 6.92 0.00 0.00 4.02
2708 4492 1.761174 GAGTGAAGGGCCTGTGGAA 59.239 57.895 6.92 0.00 0.00 3.53
2709 4493 0.329596 GAGTGAAGGGCCTGTGGAAT 59.670 55.000 6.92 0.00 0.00 3.01
2710 4494 1.559682 GAGTGAAGGGCCTGTGGAATA 59.440 52.381 6.92 0.00 0.00 1.75
2711 4495 1.992557 AGTGAAGGGCCTGTGGAATAA 59.007 47.619 6.92 0.00 0.00 1.40
2712 4496 2.378547 AGTGAAGGGCCTGTGGAATAAA 59.621 45.455 6.92 0.00 0.00 1.40
3061 4849 2.054799 GGAGGCATATCCCCTGTACAA 58.945 52.381 0.00 0.00 32.79 2.41
3064 4852 4.475016 GGAGGCATATCCCCTGTACAATAT 59.525 45.833 0.00 0.00 32.79 1.28
3118 4923 5.589855 TCCAGGTTCACATATATGCAAACAG 59.410 40.000 22.46 16.75 31.13 3.16
3265 5071 3.308866 GGTTCACAACAGGTCGCATATAC 59.691 47.826 0.00 0.00 0.00 1.47
3266 5072 3.173668 TCACAACAGGTCGCATATACC 57.826 47.619 0.00 0.00 37.27 2.73
3268 5074 3.955551 TCACAACAGGTCGCATATACCTA 59.044 43.478 0.00 0.00 45.78 3.08
3269 5075 4.403113 TCACAACAGGTCGCATATACCTAA 59.597 41.667 0.00 0.00 45.78 2.69
3270 5076 4.506654 CACAACAGGTCGCATATACCTAAC 59.493 45.833 0.00 0.00 45.78 2.34
3271 5077 4.404715 ACAACAGGTCGCATATACCTAACT 59.595 41.667 0.00 0.00 45.78 2.24
3272 5078 4.585955 ACAGGTCGCATATACCTAACTG 57.414 45.455 0.00 0.00 45.78 3.16
3273 5079 4.212716 ACAGGTCGCATATACCTAACTGA 58.787 43.478 0.00 0.00 45.78 3.41
3274 5080 4.833380 ACAGGTCGCATATACCTAACTGAT 59.167 41.667 0.00 0.00 45.78 2.90
3275 5081 5.304614 ACAGGTCGCATATACCTAACTGATT 59.695 40.000 0.00 0.00 45.78 2.57
3276 5082 6.183360 ACAGGTCGCATATACCTAACTGATTT 60.183 38.462 0.00 0.00 45.78 2.17
3277 5083 7.014905 ACAGGTCGCATATACCTAACTGATTTA 59.985 37.037 0.00 0.00 45.78 1.40
3278 5084 7.328737 CAGGTCGCATATACCTAACTGATTTAC 59.671 40.741 0.00 0.00 45.78 2.01
3279 5085 7.232941 AGGTCGCATATACCTAACTGATTTACT 59.767 37.037 0.00 0.00 45.69 2.24
3280 5086 7.871463 GGTCGCATATACCTAACTGATTTACTT 59.129 37.037 0.00 0.00 33.97 2.24
3281 5087 8.700644 GTCGCATATACCTAACTGATTTACTTG 58.299 37.037 0.00 0.00 0.00 3.16
3282 5088 8.418662 TCGCATATACCTAACTGATTTACTTGT 58.581 33.333 0.00 0.00 0.00 3.16
3283 5089 8.700644 CGCATATACCTAACTGATTTACTTGTC 58.299 37.037 0.00 0.00 0.00 3.18
3284 5090 9.542462 GCATATACCTAACTGATTTACTTGTCA 57.458 33.333 0.00 0.00 0.00 3.58
3289 5095 8.828688 ACCTAACTGATTTACTTGTCACTAAC 57.171 34.615 0.00 0.00 0.00 2.34
3290 5096 8.426489 ACCTAACTGATTTACTTGTCACTAACA 58.574 33.333 0.00 0.00 35.59 2.41
3291 5097 9.268268 CCTAACTGATTTACTTGTCACTAACAA 57.732 33.333 0.00 0.00 45.60 2.83
3293 5099 8.500753 AACTGATTTACTTGTCACTAACAACA 57.499 30.769 0.00 0.00 42.95 3.33
3294 5100 8.500753 ACTGATTTACTTGTCACTAACAACAA 57.499 30.769 0.00 0.00 42.95 2.83
3295 5101 8.952278 ACTGATTTACTTGTCACTAACAACAAA 58.048 29.630 0.00 0.00 42.95 2.83
3296 5102 9.781834 CTGATTTACTTGTCACTAACAACAAAA 57.218 29.630 0.00 0.00 42.95 2.44
3301 5107 9.724839 TTACTTGTCACTAACAACAAAATTAGC 57.275 29.630 0.00 0.00 42.95 3.09
3302 5108 7.200455 ACTTGTCACTAACAACAAAATTAGCC 58.800 34.615 0.00 0.00 42.95 3.93
3303 5109 6.701145 TGTCACTAACAACAAAATTAGCCA 57.299 33.333 0.00 0.00 34.03 4.75
3304 5110 7.101652 TGTCACTAACAACAAAATTAGCCAA 57.898 32.000 0.00 0.00 34.03 4.52
3305 5111 7.199766 TGTCACTAACAACAAAATTAGCCAAG 58.800 34.615 0.00 0.00 34.03 3.61
3306 5112 6.640907 GTCACTAACAACAAAATTAGCCAAGG 59.359 38.462 0.00 0.00 32.58 3.61
3307 5113 5.925969 CACTAACAACAAAATTAGCCAAGGG 59.074 40.000 0.00 0.00 32.58 3.95
3308 5114 5.600898 ACTAACAACAAAATTAGCCAAGGGT 59.399 36.000 0.00 0.00 32.58 4.34
3309 5115 6.778559 ACTAACAACAAAATTAGCCAAGGGTA 59.221 34.615 0.00 0.00 32.58 3.69
3310 5116 6.487299 AACAACAAAATTAGCCAAGGGTAA 57.513 33.333 12.62 12.62 41.41 2.85
3311 5117 6.680148 ACAACAAAATTAGCCAAGGGTAAT 57.320 33.333 15.77 15.77 46.63 1.89
3318 5124 2.124277 AGCCAAGGGTAATTTCGTCC 57.876 50.000 0.00 0.00 0.00 4.79
3319 5125 1.633945 AGCCAAGGGTAATTTCGTCCT 59.366 47.619 0.00 0.00 0.00 3.85
3320 5126 2.841881 AGCCAAGGGTAATTTCGTCCTA 59.158 45.455 0.00 0.00 0.00 2.94
3321 5127 3.264964 AGCCAAGGGTAATTTCGTCCTAA 59.735 43.478 0.00 0.00 0.00 2.69
3322 5128 4.011698 GCCAAGGGTAATTTCGTCCTAAA 58.988 43.478 0.00 0.00 0.00 1.85
3323 5129 4.643334 GCCAAGGGTAATTTCGTCCTAAAT 59.357 41.667 0.00 0.00 0.00 1.40
3324 5130 5.126545 GCCAAGGGTAATTTCGTCCTAAATT 59.873 40.000 0.00 0.00 40.98 1.82
3325 5131 6.679638 GCCAAGGGTAATTTCGTCCTAAATTC 60.680 42.308 0.00 0.00 39.27 2.17
3326 5132 6.602009 CCAAGGGTAATTTCGTCCTAAATTCT 59.398 38.462 0.00 0.00 39.27 2.40
3327 5133 7.201705 CCAAGGGTAATTTCGTCCTAAATTCTC 60.202 40.741 0.00 0.00 39.27 2.87
3328 5134 7.196637 AGGGTAATTTCGTCCTAAATTCTCT 57.803 36.000 0.00 0.00 39.27 3.10
3329 5135 8.315220 AGGGTAATTTCGTCCTAAATTCTCTA 57.685 34.615 0.00 0.00 39.27 2.43
3330 5136 8.935741 AGGGTAATTTCGTCCTAAATTCTCTAT 58.064 33.333 0.00 0.00 39.27 1.98
3339 5145 9.542462 TCGTCCTAAATTCTCTATAATTTGGTG 57.458 33.333 5.12 0.00 38.98 4.17
3340 5146 8.283291 CGTCCTAAATTCTCTATAATTTGGTGC 58.717 37.037 5.12 0.00 38.98 5.01
3341 5147 8.568794 GTCCTAAATTCTCTATAATTTGGTGCC 58.431 37.037 5.12 0.00 38.98 5.01
3342 5148 8.502738 TCCTAAATTCTCTATAATTTGGTGCCT 58.497 33.333 5.12 0.00 38.98 4.75
3343 5149 9.136323 CCTAAATTCTCTATAATTTGGTGCCTT 57.864 33.333 5.12 0.00 38.98 4.35
3344 5150 9.956720 CTAAATTCTCTATAATTTGGTGCCTTG 57.043 33.333 5.12 0.00 38.98 3.61
3345 5151 6.966534 ATTCTCTATAATTTGGTGCCTTGG 57.033 37.500 0.00 0.00 0.00 3.61
3346 5152 5.450818 TCTCTATAATTTGGTGCCTTGGT 57.549 39.130 0.00 0.00 0.00 3.67
3347 5153 5.437060 TCTCTATAATTTGGTGCCTTGGTC 58.563 41.667 0.00 0.00 0.00 4.02
3348 5154 5.045213 TCTCTATAATTTGGTGCCTTGGTCA 60.045 40.000 0.00 0.00 0.00 4.02
3349 5155 4.947388 TCTATAATTTGGTGCCTTGGTCAC 59.053 41.667 5.92 5.92 0.00 3.67
3353 5159 2.978010 GGTGCCTTGGTCACCGTG 60.978 66.667 14.20 0.00 43.75 4.94
3354 5160 3.660111 GTGCCTTGGTCACCGTGC 61.660 66.667 0.00 0.00 0.00 5.34
3355 5161 3.872603 TGCCTTGGTCACCGTGCT 61.873 61.111 3.96 0.00 0.00 4.40
3356 5162 3.050275 GCCTTGGTCACCGTGCTC 61.050 66.667 0.00 0.00 0.00 4.26
3357 5163 2.425592 CCTTGGTCACCGTGCTCA 59.574 61.111 0.00 0.00 0.00 4.26
3358 5164 1.227823 CCTTGGTCACCGTGCTCAA 60.228 57.895 0.00 0.47 0.00 3.02
3359 5165 0.817634 CCTTGGTCACCGTGCTCAAA 60.818 55.000 0.00 0.00 0.00 2.69
3360 5166 1.021202 CTTGGTCACCGTGCTCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
3361 5167 1.002468 CTTGGTCACCGTGCTCAAAAG 60.002 52.381 0.00 0.00 0.00 2.27
3362 5168 0.179234 TGGTCACCGTGCTCAAAAGA 59.821 50.000 0.00 0.00 0.00 2.52
3363 5169 1.305201 GGTCACCGTGCTCAAAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
3364 5170 1.880027 GGTCACCGTGCTCAAAAGAAT 59.120 47.619 0.00 0.00 0.00 2.40
3365 5171 3.071479 GGTCACCGTGCTCAAAAGAATA 58.929 45.455 0.00 0.00 0.00 1.75
3366 5172 3.120304 GGTCACCGTGCTCAAAAGAATAC 60.120 47.826 0.00 0.00 0.00 1.89
3367 5173 3.496884 GTCACCGTGCTCAAAAGAATACA 59.503 43.478 0.00 0.00 0.00 2.29
3368 5174 3.496884 TCACCGTGCTCAAAAGAATACAC 59.503 43.478 0.00 0.00 0.00 2.90
3369 5175 2.812011 ACCGTGCTCAAAAGAATACACC 59.188 45.455 0.00 0.00 0.00 4.16
3370 5176 3.074412 CCGTGCTCAAAAGAATACACCT 58.926 45.455 0.00 0.00 0.00 4.00
3371 5177 3.502211 CCGTGCTCAAAAGAATACACCTT 59.498 43.478 0.00 0.00 0.00 3.50
3372 5178 4.693566 CCGTGCTCAAAAGAATACACCTTA 59.306 41.667 0.00 0.00 0.00 2.69
3373 5179 5.163854 CCGTGCTCAAAAGAATACACCTTAG 60.164 44.000 0.00 0.00 0.00 2.18
3374 5180 5.637810 CGTGCTCAAAAGAATACACCTTAGA 59.362 40.000 0.00 0.00 0.00 2.10
3375 5181 6.147164 CGTGCTCAAAAGAATACACCTTAGAA 59.853 38.462 0.00 0.00 0.00 2.10
3376 5182 7.307751 CGTGCTCAAAAGAATACACCTTAGAAA 60.308 37.037 0.00 0.00 0.00 2.52
3377 5183 8.349983 GTGCTCAAAAGAATACACCTTAGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
3378 5184 8.567948 TGCTCAAAAGAATACACCTTAGAAAAG 58.432 33.333 0.00 0.00 0.00 2.27
3389 5195 3.975168 CTTAGAAAAGGAACGGAGGGA 57.025 47.619 0.00 0.00 0.00 4.20
3390 5196 3.863041 CTTAGAAAAGGAACGGAGGGAG 58.137 50.000 0.00 0.00 0.00 4.30
3391 5197 1.730851 AGAAAAGGAACGGAGGGAGT 58.269 50.000 0.00 0.00 0.00 3.85
3392 5198 2.898662 AGAAAAGGAACGGAGGGAGTA 58.101 47.619 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.614306 GCCCTACGTGGTGAATTTTGTAAC 60.614 45.833 0.00 0.00 0.00 2.50
32 33 0.609662 GTTAGTGGTGTTCCGCCCTA 59.390 55.000 0.00 0.00 44.61 3.53
34 35 0.609662 TAGTTAGTGGTGTTCCGCCC 59.390 55.000 0.00 0.00 44.61 6.13
91 92 2.967201 CAATGTGGTGGCCCATATGATT 59.033 45.455 3.65 0.00 41.31 2.57
158 159 5.127845 TGAAGAAGGAAGCGATGAGTATCTT 59.872 40.000 0.00 0.00 34.92 2.40
202 203 6.650390 CGACCCTGGAAAATGAAAATTTTGAT 59.350 34.615 8.47 2.02 34.24 2.57
294 295 1.305219 GCTCCGTGCTTACATTGCCA 61.305 55.000 0.00 0.00 38.95 4.92
327 328 8.581578 GGGATTTCATTGGACTTTGTAAAAGTA 58.418 33.333 5.41 0.00 0.00 2.24
328 329 7.070571 TGGGATTTCATTGGACTTTGTAAAAGT 59.929 33.333 5.10 5.10 0.00 2.66
371 372 4.664677 AGACCAGACCACACGCGC 62.665 66.667 5.73 0.00 0.00 6.86
372 373 2.734723 CAGACCAGACCACACGCG 60.735 66.667 3.53 3.53 0.00 6.01
373 374 2.357517 CCAGACCAGACCACACGC 60.358 66.667 0.00 0.00 0.00 5.34
375 376 2.032681 GCCCAGACCAGACCACAC 59.967 66.667 0.00 0.00 0.00 3.82
376 377 2.122413 AGCCCAGACCAGACCACA 60.122 61.111 0.00 0.00 0.00 4.17
378 379 2.607750 GGAGCCCAGACCAGACCA 60.608 66.667 0.00 0.00 0.00 4.02
379 380 2.607750 TGGAGCCCAGACCAGACC 60.608 66.667 0.00 0.00 0.00 3.85
381 382 2.607750 GGTGGAGCCCAGACCAGA 60.608 66.667 0.00 0.00 36.82 3.86
382 383 2.930019 TGGTGGAGCCCAGACCAG 60.930 66.667 0.00 0.00 36.82 4.00
383 384 3.249189 GTGGTGGAGCCCAGACCA 61.249 66.667 0.00 0.00 34.43 4.02
384 385 4.035102 GGTGGTGGAGCCCAGACC 62.035 72.222 6.60 6.60 34.43 3.85
385 386 4.035102 GGGTGGTGGAGCCCAGAC 62.035 72.222 0.00 0.00 44.23 3.51
407 408 0.030908 AGAGCATTAGTACGGCGAGC 59.969 55.000 16.62 5.51 0.00 5.03
415 416 5.181245 GCAAGTTTTGTGGAGAGCATTAGTA 59.819 40.000 0.00 0.00 0.00 1.82
418 419 3.888323 TGCAAGTTTTGTGGAGAGCATTA 59.112 39.130 0.00 0.00 0.00 1.90
433 434 1.708341 AGGAAGTGGCAATGCAAGTT 58.292 45.000 7.79 4.65 0.00 2.66
442 443 1.277842 TGCTTCGATAAGGAAGTGGCA 59.722 47.619 4.46 0.00 44.17 4.92
444 445 3.452474 CTCTGCTTCGATAAGGAAGTGG 58.548 50.000 4.46 0.00 44.17 4.00
495 496 6.318292 GGTAGACCAAAAACGCACAACGAT 62.318 45.833 0.00 0.00 39.80 3.73
499 500 1.677052 GGGTAGACCAAAAACGCACAA 59.323 47.619 0.21 0.00 39.85 3.33
500 501 1.310904 GGGTAGACCAAAAACGCACA 58.689 50.000 0.21 0.00 39.85 4.57
592 594 1.196581 CATTGCAATCCAACGACGTGA 59.803 47.619 9.53 0.00 35.99 4.35
623 625 2.185004 ACACCTCCTGTCCAATTTCG 57.815 50.000 0.00 0.00 0.00 3.46
624 626 3.636764 ACAAACACCTCCTGTCCAATTTC 59.363 43.478 0.00 0.00 30.29 2.17
625 627 3.642141 ACAAACACCTCCTGTCCAATTT 58.358 40.909 0.00 0.00 30.29 1.82
626 628 3.312736 ACAAACACCTCCTGTCCAATT 57.687 42.857 0.00 0.00 30.29 2.32
635 637 4.204799 AGAACCAAACTACAAACACCTCC 58.795 43.478 0.00 0.00 0.00 4.30
676 678 5.964958 ACATACTGACACATTTTTCTGGG 57.035 39.130 0.00 0.00 0.00 4.45
678 680 6.655003 ACCCTACATACTGACACATTTTTCTG 59.345 38.462 0.00 0.00 0.00 3.02
692 694 2.771943 CCATGACCACACCCTACATACT 59.228 50.000 0.00 0.00 0.00 2.12
738 740 3.112580 ACTTTTTGCGAAAATGACCACG 58.887 40.909 12.26 2.04 34.45 4.94
767 769 3.526534 AGTTAAGATCTCGCAGCTTTCC 58.473 45.455 0.00 0.00 0.00 3.13
768 770 4.726306 GCAAGTTAAGATCTCGCAGCTTTC 60.726 45.833 0.00 0.00 0.00 2.62
770 772 2.675348 GCAAGTTAAGATCTCGCAGCTT 59.325 45.455 0.00 0.00 0.00 3.74
771 773 2.093764 AGCAAGTTAAGATCTCGCAGCT 60.094 45.455 0.00 0.00 0.00 4.24
772 774 2.275318 AGCAAGTTAAGATCTCGCAGC 58.725 47.619 0.00 0.00 0.00 5.25
789 791 2.349167 ATATATGGGGAGCAGGAGCA 57.651 50.000 0.00 0.00 45.49 4.26
800 802 4.443457 CCTTGCTCGTGGGATATATATGGG 60.443 50.000 0.00 0.00 0.00 4.00
811 813 1.508088 GCATTTCCTTGCTCGTGGG 59.492 57.895 0.00 0.00 39.57 4.61
818 820 1.474077 CTGGGTGTAGCATTTCCTTGC 59.526 52.381 0.00 0.00 43.09 4.01
821 823 3.690460 CTTTCTGGGTGTAGCATTTCCT 58.310 45.455 0.00 0.00 0.00 3.36
822 824 2.164422 GCTTTCTGGGTGTAGCATTTCC 59.836 50.000 0.00 0.00 33.88 3.13
823 825 2.164422 GGCTTTCTGGGTGTAGCATTTC 59.836 50.000 0.00 0.00 35.36 2.17
824 826 2.171003 GGCTTTCTGGGTGTAGCATTT 58.829 47.619 0.00 0.00 35.36 2.32
825 827 1.355720 AGGCTTTCTGGGTGTAGCATT 59.644 47.619 0.00 0.00 35.36 3.56
826 828 0.995024 AGGCTTTCTGGGTGTAGCAT 59.005 50.000 0.00 0.00 35.36 3.79
827 829 0.771127 AAGGCTTTCTGGGTGTAGCA 59.229 50.000 0.00 0.00 35.36 3.49
828 830 2.357075 GTAAGGCTTTCTGGGTGTAGC 58.643 52.381 4.45 0.00 0.00 3.58
829 831 2.028385 ACGTAAGGCTTTCTGGGTGTAG 60.028 50.000 4.45 0.00 46.39 2.74
830 832 1.972795 ACGTAAGGCTTTCTGGGTGTA 59.027 47.619 4.45 0.00 46.39 2.90
831 833 0.763035 ACGTAAGGCTTTCTGGGTGT 59.237 50.000 4.45 0.00 46.39 4.16
832 834 1.535462 CAACGTAAGGCTTTCTGGGTG 59.465 52.381 4.45 0.00 46.39 4.61
833 835 1.418637 TCAACGTAAGGCTTTCTGGGT 59.581 47.619 4.45 0.00 46.39 4.51
834 836 2.076863 CTCAACGTAAGGCTTTCTGGG 58.923 52.381 4.45 0.00 46.39 4.45
835 837 2.767505 ACTCAACGTAAGGCTTTCTGG 58.232 47.619 4.45 0.00 46.39 3.86
836 838 4.813296 AAACTCAACGTAAGGCTTTCTG 57.187 40.909 4.45 0.00 46.39 3.02
837 839 7.227910 TGAATAAAACTCAACGTAAGGCTTTCT 59.772 33.333 4.45 0.00 46.39 2.52
838 840 7.357303 TGAATAAAACTCAACGTAAGGCTTTC 58.643 34.615 4.45 0.00 46.39 2.62
839 841 7.266922 TGAATAAAACTCAACGTAAGGCTTT 57.733 32.000 4.45 0.00 46.39 3.51
840 842 6.870971 TGAATAAAACTCAACGTAAGGCTT 57.129 33.333 4.58 4.58 46.39 4.35
841 843 8.556213 TTATGAATAAAACTCAACGTAAGGCT 57.444 30.769 0.00 0.00 46.39 4.58
842 844 7.428472 GCTTATGAATAAAACTCAACGTAAGGC 59.572 37.037 0.00 0.00 46.39 4.35
843 845 7.908601 GGCTTATGAATAAAACTCAACGTAAGG 59.091 37.037 0.00 0.00 46.39 2.69
845 847 8.556213 AGGCTTATGAATAAAACTCAACGTAA 57.444 30.769 0.00 0.00 0.00 3.18
846 848 8.556213 AAGGCTTATGAATAAAACTCAACGTA 57.444 30.769 0.00 0.00 0.00 3.57
847 849 7.448748 AAGGCTTATGAATAAAACTCAACGT 57.551 32.000 0.00 0.00 0.00 3.99
848 850 7.807907 ACAAAGGCTTATGAATAAAACTCAACG 59.192 33.333 0.00 0.00 0.00 4.10
856 858 9.487442 AGGGATTTACAAAGGCTTATGAATAAA 57.513 29.630 0.00 2.40 0.00 1.40
857 859 9.487442 AAGGGATTTACAAAGGCTTATGAATAA 57.513 29.630 0.00 0.00 0.00 1.40
858 860 9.131791 GAAGGGATTTACAAAGGCTTATGAATA 57.868 33.333 0.00 0.00 0.00 1.75
859 861 7.201821 CGAAGGGATTTACAAAGGCTTATGAAT 60.202 37.037 0.00 0.53 0.00 2.57
860 862 6.094881 CGAAGGGATTTACAAAGGCTTATGAA 59.905 38.462 0.00 0.00 0.00 2.57
861 863 5.588648 CGAAGGGATTTACAAAGGCTTATGA 59.411 40.000 0.00 0.00 0.00 2.15
862 864 5.357032 ACGAAGGGATTTACAAAGGCTTATG 59.643 40.000 0.00 4.06 0.00 1.90
863 865 5.506708 ACGAAGGGATTTACAAAGGCTTAT 58.493 37.500 0.00 0.00 0.00 1.73
864 866 4.913784 ACGAAGGGATTTACAAAGGCTTA 58.086 39.130 0.00 0.00 0.00 3.09
865 867 3.763057 ACGAAGGGATTTACAAAGGCTT 58.237 40.909 0.00 0.00 0.00 4.35
866 868 3.434940 ACGAAGGGATTTACAAAGGCT 57.565 42.857 0.00 0.00 0.00 4.58
867 869 3.626217 CCTACGAAGGGATTTACAAAGGC 59.374 47.826 0.00 0.00 39.48 4.35
868 870 4.874396 GTCCTACGAAGGGATTTACAAAGG 59.126 45.833 0.00 0.00 43.84 3.11
869 871 5.350640 GTGTCCTACGAAGGGATTTACAAAG 59.649 44.000 0.00 0.00 43.84 2.77
870 872 5.240121 GTGTCCTACGAAGGGATTTACAAA 58.760 41.667 0.00 0.00 43.84 2.83
871 873 4.322953 GGTGTCCTACGAAGGGATTTACAA 60.323 45.833 0.00 0.00 43.84 2.41
872 874 3.196254 GGTGTCCTACGAAGGGATTTACA 59.804 47.826 0.00 0.00 43.84 2.41
873 875 3.431346 GGGTGTCCTACGAAGGGATTTAC 60.431 52.174 0.00 0.00 43.84 2.01
874 876 2.767960 GGGTGTCCTACGAAGGGATTTA 59.232 50.000 0.00 0.00 43.84 1.40
875 877 1.558294 GGGTGTCCTACGAAGGGATTT 59.442 52.381 0.00 0.00 43.84 2.17
876 878 1.201424 GGGTGTCCTACGAAGGGATT 58.799 55.000 0.00 0.00 43.84 3.01
877 879 0.690077 GGGGTGTCCTACGAAGGGAT 60.690 60.000 0.00 0.00 43.84 3.85
878 880 1.305549 GGGGTGTCCTACGAAGGGA 60.306 63.158 0.00 0.00 43.84 4.20
879 881 2.364780 GGGGGTGTCCTACGAAGGG 61.365 68.421 0.00 0.00 43.84 3.95
880 882 1.196104 TTGGGGGTGTCCTACGAAGG 61.196 60.000 0.00 0.00 45.21 3.46
881 883 0.249398 CTTGGGGGTGTCCTACGAAG 59.751 60.000 0.00 0.00 35.33 3.79
882 884 1.833787 GCTTGGGGGTGTCCTACGAA 61.834 60.000 0.00 0.00 35.33 3.85
883 885 2.288025 GCTTGGGGGTGTCCTACGA 61.288 63.158 0.00 0.00 35.33 3.43
884 886 2.267961 GCTTGGGGGTGTCCTACG 59.732 66.667 0.00 0.00 35.33 3.51
885 887 2.228480 TGGCTTGGGGGTGTCCTAC 61.228 63.158 0.00 0.00 35.33 3.18
886 888 2.208640 TGGCTTGGGGGTGTCCTA 59.791 61.111 0.00 0.00 35.33 2.94
887 889 3.580319 GTGGCTTGGGGGTGTCCT 61.580 66.667 0.00 0.00 35.33 3.85
888 890 3.897122 TGTGGCTTGGGGGTGTCC 61.897 66.667 0.00 0.00 0.00 4.02
889 891 2.597510 GTGTGGCTTGGGGGTGTC 60.598 66.667 0.00 0.00 0.00 3.67
890 892 3.425014 TGTGTGGCTTGGGGGTGT 61.425 61.111 0.00 0.00 0.00 4.16
891 893 2.598394 CTGTGTGGCTTGGGGGTG 60.598 66.667 0.00 0.00 0.00 4.61
892 894 4.603535 GCTGTGTGGCTTGGGGGT 62.604 66.667 0.00 0.00 0.00 4.95
893 895 4.601794 TGCTGTGTGGCTTGGGGG 62.602 66.667 0.00 0.00 0.00 5.40
894 896 3.297620 GTGCTGTGTGGCTTGGGG 61.298 66.667 0.00 0.00 0.00 4.96
895 897 2.519063 TGTGCTGTGTGGCTTGGG 60.519 61.111 0.00 0.00 0.00 4.12
896 898 2.723746 GTGTGCTGTGTGGCTTGG 59.276 61.111 0.00 0.00 0.00 3.61
897 899 2.723746 GGTGTGCTGTGTGGCTTG 59.276 61.111 0.00 0.00 0.00 4.01
898 900 2.519302 GGGTGTGCTGTGTGGCTT 60.519 61.111 0.00 0.00 0.00 4.35
899 901 1.705002 TAAGGGTGTGCTGTGTGGCT 61.705 55.000 0.00 0.00 0.00 4.75
900 902 0.609131 ATAAGGGTGTGCTGTGTGGC 60.609 55.000 0.00 0.00 0.00 5.01
901 903 1.453155 GATAAGGGTGTGCTGTGTGG 58.547 55.000 0.00 0.00 0.00 4.17
902 904 1.078709 CGATAAGGGTGTGCTGTGTG 58.921 55.000 0.00 0.00 0.00 3.82
903 905 0.973632 TCGATAAGGGTGTGCTGTGT 59.026 50.000 0.00 0.00 0.00 3.72
904 906 2.093306 TTCGATAAGGGTGTGCTGTG 57.907 50.000 0.00 0.00 0.00 3.66
905 907 2.851263 TTTCGATAAGGGTGTGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
930 932 2.464459 GGACTGCGTGCTGTATGGC 61.464 63.158 4.29 0.00 0.00 4.40
931 933 1.079197 TGGACTGCGTGCTGTATGG 60.079 57.895 4.29 0.00 0.00 2.74
1043 1057 3.047718 CTCGCTTCGTACTCCGGCA 62.048 63.158 0.00 0.00 37.11 5.69
1125 1145 0.824109 CGCCCTTCTGGATGTAGTCA 59.176 55.000 0.00 0.00 35.39 3.41
1173 1193 1.728426 GAGGTGTTCGACGACGTGG 60.728 63.158 4.58 3.86 40.69 4.94
1607 3351 3.479269 GCGGCGCCGTAGATATGC 61.479 66.667 45.02 25.37 42.09 3.14
1935 3688 2.362889 CCCTGCGGAATGCCCTTT 60.363 61.111 0.00 0.00 45.60 3.11
2158 3917 2.172372 GCGAGCTGCTCATCACCAG 61.172 63.158 27.46 11.60 41.73 4.00
2367 4126 3.203412 CGAGCTCCTACCGACGCT 61.203 66.667 8.47 0.00 35.03 5.07
2458 4229 3.832490 AGTTCACCAGCAGTACTGTATGA 59.168 43.478 23.44 17.48 45.68 2.15
2468 4239 0.322277 AGGCATGAGTTCACCAGCAG 60.322 55.000 0.00 0.00 0.00 4.24
2500 4279 2.095213 TGCGCGACATTATTTGGTTCTC 59.905 45.455 12.10 0.00 0.00 2.87
2516 4295 1.202302 TCTAGACTTCCATCTTGCGCG 60.202 52.381 0.00 0.00 0.00 6.86
2521 4300 5.950549 TCCTACGTTTCTAGACTTCCATCTT 59.049 40.000 0.00 0.00 0.00 2.40
2532 4311 3.379688 GGTGGTACCTCCTACGTTTCTAG 59.620 52.174 23.22 0.00 34.73 2.43
2536 4315 1.620323 GTGGTGGTACCTCCTACGTTT 59.380 52.381 28.63 0.00 39.58 3.60
2539 4318 1.660560 CGGTGGTGGTACCTCCTACG 61.661 65.000 28.63 26.39 46.91 3.51
2543 4322 2.660802 CACGGTGGTGGTACCTCC 59.339 66.667 23.64 23.64 45.93 4.30
2544 4323 2.047560 GCACGGTGGTGGTACCTC 60.048 66.667 14.36 9.71 44.54 3.85
2604 4383 6.922957 GGCACAGATCTCAGAGTAAAGAATAG 59.077 42.308 0.00 0.00 0.00 1.73
2606 4385 5.424895 AGGCACAGATCTCAGAGTAAAGAAT 59.575 40.000 0.00 0.00 0.00 2.40
2612 4391 1.753649 GCAGGCACAGATCTCAGAGTA 59.246 52.381 0.00 0.00 0.00 2.59
2615 4394 1.903294 GGCAGGCACAGATCTCAGA 59.097 57.895 0.00 0.00 0.00 3.27
2624 4403 0.035534 ATACATCAACGGCAGGCACA 60.036 50.000 0.00 0.00 0.00 4.57
2630 4409 4.518249 TCACCAATAATACATCAACGGCA 58.482 39.130 0.00 0.00 0.00 5.69
2632 4411 6.618287 ACATCACCAATAATACATCAACGG 57.382 37.500 0.00 0.00 0.00 4.44
2660 4439 6.241207 TGTTGCTTGCTCATAAAAGTACTC 57.759 37.500 0.00 0.00 0.00 2.59
2665 4449 5.575606 CCTCAATGTTGCTTGCTCATAAAAG 59.424 40.000 0.00 0.00 0.00 2.27
2674 4458 1.068055 CACTCCCTCAATGTTGCTTGC 60.068 52.381 0.00 0.00 0.00 4.01
2685 4469 1.920325 CAGGCCCTTCACTCCCTCA 60.920 63.158 0.00 0.00 0.00 3.86
2702 4486 8.924511 AAGAATTCTCTCTTGTTTATTCCACA 57.075 30.769 8.78 0.00 34.31 4.17
2710 4494 8.090831 GGCCAAATAAAGAATTCTCTCTTGTTT 58.909 33.333 8.78 7.71 35.79 2.83
2711 4495 7.310052 GGGCCAAATAAAGAATTCTCTCTTGTT 60.310 37.037 8.78 1.65 35.79 2.83
2712 4496 6.153510 GGGCCAAATAAAGAATTCTCTCTTGT 59.846 38.462 8.78 0.00 35.79 3.16
3265 5071 8.827177 TGTTAGTGACAAGTAAATCAGTTAGG 57.173 34.615 0.00 0.00 34.69 2.69
3279 5085 7.101652 TGGCTAATTTTGTTGTTAGTGACAA 57.898 32.000 0.00 0.00 45.70 3.18
3280 5086 6.701145 TGGCTAATTTTGTTGTTAGTGACA 57.299 33.333 0.00 0.00 36.19 3.58
3281 5087 6.640907 CCTTGGCTAATTTTGTTGTTAGTGAC 59.359 38.462 0.00 0.00 31.98 3.67
3282 5088 6.239176 CCCTTGGCTAATTTTGTTGTTAGTGA 60.239 38.462 0.00 0.00 31.98 3.41
3283 5089 5.925969 CCCTTGGCTAATTTTGTTGTTAGTG 59.074 40.000 0.00 0.00 31.98 2.74
3284 5090 5.600898 ACCCTTGGCTAATTTTGTTGTTAGT 59.399 36.000 0.00 0.00 31.98 2.24
3285 5091 6.096673 ACCCTTGGCTAATTTTGTTGTTAG 57.903 37.500 0.00 0.00 0.00 2.34
3286 5092 7.598759 TTACCCTTGGCTAATTTTGTTGTTA 57.401 32.000 0.00 0.00 0.00 2.41
3287 5093 6.487299 TTACCCTTGGCTAATTTTGTTGTT 57.513 33.333 0.00 0.00 0.00 2.83
3288 5094 6.680148 ATTACCCTTGGCTAATTTTGTTGT 57.320 33.333 0.00 0.00 0.00 3.32
3289 5095 7.148656 CGAAATTACCCTTGGCTAATTTTGTTG 60.149 37.037 11.69 3.28 33.52 3.33
3290 5096 6.871492 CGAAATTACCCTTGGCTAATTTTGTT 59.129 34.615 11.69 0.00 33.52 2.83
3291 5097 6.014925 ACGAAATTACCCTTGGCTAATTTTGT 60.015 34.615 18.43 18.43 37.77 2.83
3292 5098 6.394809 ACGAAATTACCCTTGGCTAATTTTG 58.605 36.000 17.59 17.59 36.88 2.44
3293 5099 6.350696 GGACGAAATTACCCTTGGCTAATTTT 60.351 38.462 11.69 1.39 33.52 1.82
3294 5100 5.126545 GGACGAAATTACCCTTGGCTAATTT 59.873 40.000 10.70 10.70 34.69 1.82
3295 5101 4.643334 GGACGAAATTACCCTTGGCTAATT 59.357 41.667 0.00 0.00 0.00 1.40
3296 5102 4.079958 AGGACGAAATTACCCTTGGCTAAT 60.080 41.667 0.00 0.00 0.00 1.73
3297 5103 3.264964 AGGACGAAATTACCCTTGGCTAA 59.735 43.478 0.00 0.00 0.00 3.09
3298 5104 2.841881 AGGACGAAATTACCCTTGGCTA 59.158 45.455 0.00 0.00 0.00 3.93
3299 5105 1.633945 AGGACGAAATTACCCTTGGCT 59.366 47.619 0.00 0.00 0.00 4.75
3300 5106 2.124277 AGGACGAAATTACCCTTGGC 57.876 50.000 0.00 0.00 0.00 4.52
3301 5107 6.602009 AGAATTTAGGACGAAATTACCCTTGG 59.398 38.462 3.64 0.00 38.76 3.61
3302 5108 7.553044 AGAGAATTTAGGACGAAATTACCCTTG 59.447 37.037 3.64 0.00 38.76 3.61
3303 5109 7.631007 AGAGAATTTAGGACGAAATTACCCTT 58.369 34.615 3.64 0.00 38.76 3.95
3304 5110 7.196637 AGAGAATTTAGGACGAAATTACCCT 57.803 36.000 3.64 0.00 38.76 4.34
3313 5119 9.542462 CACCAAATTATAGAGAATTTAGGACGA 57.458 33.333 13.18 0.00 36.99 4.20
3314 5120 8.283291 GCACCAAATTATAGAGAATTTAGGACG 58.717 37.037 13.18 0.00 36.99 4.79
3315 5121 8.568794 GGCACCAAATTATAGAGAATTTAGGAC 58.431 37.037 13.18 7.88 36.99 3.85
3316 5122 8.502738 AGGCACCAAATTATAGAGAATTTAGGA 58.497 33.333 13.18 0.00 36.99 2.94
3317 5123 8.697507 AGGCACCAAATTATAGAGAATTTAGG 57.302 34.615 0.00 3.15 36.99 2.69
3318 5124 9.956720 CAAGGCACCAAATTATAGAGAATTTAG 57.043 33.333 0.00 0.00 36.99 1.85
3319 5125 8.912988 CCAAGGCACCAAATTATAGAGAATTTA 58.087 33.333 0.00 0.00 36.99 1.40
3320 5126 7.400052 ACCAAGGCACCAAATTATAGAGAATTT 59.600 33.333 0.00 0.00 39.13 1.82
3321 5127 6.897413 ACCAAGGCACCAAATTATAGAGAATT 59.103 34.615 0.00 0.00 0.00 2.17
3322 5128 6.435164 ACCAAGGCACCAAATTATAGAGAAT 58.565 36.000 0.00 0.00 0.00 2.40
3323 5129 5.826643 ACCAAGGCACCAAATTATAGAGAA 58.173 37.500 0.00 0.00 0.00 2.87
3324 5130 5.045213 TGACCAAGGCACCAAATTATAGAGA 60.045 40.000 0.00 0.00 0.00 3.10
3325 5131 5.066505 GTGACCAAGGCACCAAATTATAGAG 59.933 44.000 0.00 0.00 0.00 2.43
3326 5132 4.947388 GTGACCAAGGCACCAAATTATAGA 59.053 41.667 0.00 0.00 0.00 1.98
3327 5133 5.248870 GTGACCAAGGCACCAAATTATAG 57.751 43.478 0.00 0.00 0.00 1.31
3337 5143 3.660111 GCACGGTGACCAAGGCAC 61.660 66.667 13.29 0.00 35.56 5.01
3338 5144 3.825160 GAGCACGGTGACCAAGGCA 62.825 63.158 13.29 0.00 0.00 4.75
3339 5145 3.050275 GAGCACGGTGACCAAGGC 61.050 66.667 13.29 1.29 0.00 4.35
3340 5146 0.817634 TTTGAGCACGGTGACCAAGG 60.818 55.000 13.29 0.00 0.00 3.61
3341 5147 1.002468 CTTTTGAGCACGGTGACCAAG 60.002 52.381 13.29 6.41 0.00 3.61
3342 5148 1.021202 CTTTTGAGCACGGTGACCAA 58.979 50.000 13.29 11.43 0.00 3.67
3343 5149 0.179234 TCTTTTGAGCACGGTGACCA 59.821 50.000 13.29 5.56 0.00 4.02
3344 5150 1.305201 TTCTTTTGAGCACGGTGACC 58.695 50.000 13.29 2.76 0.00 4.02
3345 5151 3.496884 TGTATTCTTTTGAGCACGGTGAC 59.503 43.478 13.29 5.59 0.00 3.67
3346 5152 3.496884 GTGTATTCTTTTGAGCACGGTGA 59.503 43.478 13.29 0.00 0.00 4.02
3347 5153 3.364964 GGTGTATTCTTTTGAGCACGGTG 60.365 47.826 3.15 3.15 32.38 4.94
3348 5154 2.812011 GGTGTATTCTTTTGAGCACGGT 59.188 45.455 0.00 0.00 32.38 4.83
3349 5155 3.074412 AGGTGTATTCTTTTGAGCACGG 58.926 45.455 0.00 0.00 32.38 4.94
3350 5156 4.749245 AAGGTGTATTCTTTTGAGCACG 57.251 40.909 0.00 0.00 32.38 5.34
3351 5157 7.435068 TTCTAAGGTGTATTCTTTTGAGCAC 57.565 36.000 0.00 0.00 0.00 4.40
3352 5158 8.458573 TTTTCTAAGGTGTATTCTTTTGAGCA 57.541 30.769 0.00 0.00 0.00 4.26
3353 5159 8.023706 CCTTTTCTAAGGTGTATTCTTTTGAGC 58.976 37.037 0.00 0.00 45.01 4.26
3369 5175 3.261137 ACTCCCTCCGTTCCTTTTCTAAG 59.739 47.826 0.00 0.00 0.00 2.18
3370 5176 3.245441 ACTCCCTCCGTTCCTTTTCTAA 58.755 45.455 0.00 0.00 0.00 2.10
3371 5177 2.898662 ACTCCCTCCGTTCCTTTTCTA 58.101 47.619 0.00 0.00 0.00 2.10
3372 5178 1.730851 ACTCCCTCCGTTCCTTTTCT 58.269 50.000 0.00 0.00 0.00 2.52
3373 5179 2.677325 GCTACTCCCTCCGTTCCTTTTC 60.677 54.545 0.00 0.00 0.00 2.29
3374 5180 1.278413 GCTACTCCCTCCGTTCCTTTT 59.722 52.381 0.00 0.00 0.00 2.27
3375 5181 0.903236 GCTACTCCCTCCGTTCCTTT 59.097 55.000 0.00 0.00 0.00 3.11
3376 5182 0.252103 TGCTACTCCCTCCGTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
3377 5183 0.971447 GTGCTACTCCCTCCGTTCCT 60.971 60.000 0.00 0.00 0.00 3.36
3378 5184 1.516423 GTGCTACTCCCTCCGTTCC 59.484 63.158 0.00 0.00 0.00 3.62
3379 5185 1.139095 CGTGCTACTCCCTCCGTTC 59.861 63.158 0.00 0.00 0.00 3.95
3380 5186 0.322816 TACGTGCTACTCCCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
3381 5187 0.322816 TTACGTGCTACTCCCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
3382 5188 0.813184 TTTACGTGCTACTCCCTCCG 59.187 55.000 0.00 0.00 0.00 4.63
3383 5189 2.097825 TCTTTACGTGCTACTCCCTCC 58.902 52.381 0.00 0.00 0.00 4.30
3384 5190 2.479901 GCTCTTTACGTGCTACTCCCTC 60.480 54.545 0.00 0.00 0.00 4.30
3385 5191 1.477295 GCTCTTTACGTGCTACTCCCT 59.523 52.381 0.00 0.00 0.00 4.20
3386 5192 1.471153 GGCTCTTTACGTGCTACTCCC 60.471 57.143 0.00 0.00 32.84 4.30
3387 5193 1.203994 TGGCTCTTTACGTGCTACTCC 59.796 52.381 0.00 0.00 32.84 3.85
3388 5194 2.649331 TGGCTCTTTACGTGCTACTC 57.351 50.000 0.00 0.00 32.84 2.59
3389 5195 2.353803 CCTTGGCTCTTTACGTGCTACT 60.354 50.000 0.00 0.00 32.84 2.57
3390 5196 2.000447 CCTTGGCTCTTTACGTGCTAC 59.000 52.381 0.00 0.00 32.84 3.58
3391 5197 1.621814 ACCTTGGCTCTTTACGTGCTA 59.378 47.619 0.00 0.00 32.84 3.49
3392 5198 0.396811 ACCTTGGCTCTTTACGTGCT 59.603 50.000 0.00 0.00 32.84 4.40
3497 5303 1.662517 TGAGCACACGAAGCAAAAGA 58.337 45.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.