Multiple sequence alignment - TraesCS2D01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G034500 chr2D 100.000 3296 0 0 1 3296 13420444 13423739 0.000000e+00 6087.0
1 TraesCS2D01G034500 chr2D 84.451 2013 201 63 655 2616 11510272 11508321 0.000000e+00 1881.0
2 TraesCS2D01G034500 chr2D 92.344 1071 82 0 1278 2348 11477738 11476668 0.000000e+00 1524.0
3 TraesCS2D01G034500 chr2D 96.837 569 14 2 1 565 548737947 548738515 0.000000e+00 948.0
4 TraesCS2D01G034500 chr2D 91.418 268 8 6 1006 1273 11478045 11477793 1.450000e-93 353.0
5 TraesCS2D01G034500 chr2D 93.534 232 12 1 981 1212 11496564 11496336 3.150000e-90 342.0
6 TraesCS2D01G034500 chr2D 92.308 78 4 2 3011 3086 82187219 82187142 3.480000e-20 110.0
7 TraesCS2D01G034500 chr2D 100.000 40 0 0 2865 2904 11508572 11508533 1.270000e-09 75.0
8 TraesCS2D01G034500 chr2B 92.151 2064 103 28 566 2610 24089125 24091148 0.000000e+00 2859.0
9 TraesCS2D01G034500 chr2B 88.970 1641 131 26 1006 2616 17874026 17872406 0.000000e+00 1982.0
10 TraesCS2D01G034500 chr2B 92.589 1039 74 1 1296 2331 752786775 752787813 0.000000e+00 1489.0
11 TraesCS2D01G034500 chr2B 91.071 280 9 3 994 1273 17883304 17883041 6.720000e-97 364.0
12 TraesCS2D01G034500 chr2B 89.535 86 8 1 3010 3094 578147729 578147814 1.250000e-19 108.0
13 TraesCS2D01G034500 chr2A 91.619 1766 86 26 665 2402 15394541 15396272 0.000000e+00 2385.0
14 TraesCS2D01G034500 chr2A 87.726 1711 139 41 625 2297 12103695 12102018 0.000000e+00 1930.0
15 TraesCS2D01G034500 chr2A 90.717 1422 99 17 991 2405 12073490 12072095 0.000000e+00 1864.0
16 TraesCS2D01G034500 chr2A 90.525 1372 110 11 995 2363 12048598 12047244 0.000000e+00 1796.0
17 TraesCS2D01G034500 chr2A 95.091 550 10 6 2757 3289 15399297 15399846 0.000000e+00 850.0
18 TraesCS2D01G034500 chr2A 88.993 536 31 14 2261 2790 15398761 15399274 3.590000e-179 638.0
19 TraesCS2D01G034500 chr2A 89.299 271 17 9 927 1196 747087025 747087284 2.450000e-86 329.0
20 TraesCS2D01G034500 chr2A 79.839 124 9 10 2782 2904 12047322 12047214 3.530000e-10 76.8
21 TraesCS2D01G034500 chr2A 88.060 67 4 4 2782 2847 15396152 15396215 3.530000e-10 76.8
22 TraesCS2D01G034500 chr1D 97.723 571 7 3 1 565 137427380 137427950 0.000000e+00 977.0
23 TraesCS2D01G034500 chr1D 96.684 573 13 3 1 567 310852398 310852970 0.000000e+00 948.0
24 TraesCS2D01G034500 chr6D 97.552 572 9 3 1 567 12480244 12479673 0.000000e+00 974.0
25 TraesCS2D01G034500 chr6D 96.853 572 11 5 1 565 90435142 90435713 0.000000e+00 950.0
26 TraesCS2D01G034500 chr5D 97.368 570 10 3 1 565 265959035 265959604 0.000000e+00 965.0
27 TraesCS2D01G034500 chr5D 95.775 71 2 1 3011 3080 128577609 128577679 2.690000e-21 113.0
28 TraesCS2D01G034500 chr5D 92.500 80 3 3 3011 3087 331119008 331118929 9.670000e-21 111.0
29 TraesCS2D01G034500 chr5D 91.250 80 5 2 3011 3088 538675088 538675167 1.250000e-19 108.0
30 TraesCS2D01G034500 chr3D 97.368 570 10 3 1 565 505057133 505056564 0.000000e+00 965.0
31 TraesCS2D01G034500 chr3D 97.364 569 11 2 1 565 564999865 565000433 0.000000e+00 965.0
32 TraesCS2D01G034500 chr4D 97.193 570 11 3 1 565 67454041 67454610 0.000000e+00 959.0
33 TraesCS2D01G034500 chr5B 95.775 71 2 1 3011 3080 140965951 140966021 2.690000e-21 113.0
34 TraesCS2D01G034500 chr5B 95.714 70 2 1 3011 3079 222593031 222593100 9.670000e-21 111.0
35 TraesCS2D01G034500 chr7D 91.250 80 3 4 3011 3087 34378771 34378849 4.500000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G034500 chr2D 13420444 13423739 3295 False 6087.00 6087 100.00000 1 3296 1 chr2D.!!$F1 3295
1 TraesCS2D01G034500 chr2D 11508321 11510272 1951 True 978.00 1881 92.22550 655 2904 2 chr2D.!!$R4 2249
2 TraesCS2D01G034500 chr2D 548737947 548738515 568 False 948.00 948 96.83700 1 565 1 chr2D.!!$F2 564
3 TraesCS2D01G034500 chr2D 11476668 11478045 1377 True 938.50 1524 91.88100 1006 2348 2 chr2D.!!$R3 1342
4 TraesCS2D01G034500 chr2B 24089125 24091148 2023 False 2859.00 2859 92.15100 566 2610 1 chr2B.!!$F1 2044
5 TraesCS2D01G034500 chr2B 17872406 17874026 1620 True 1982.00 1982 88.97000 1006 2616 1 chr2B.!!$R1 1610
6 TraesCS2D01G034500 chr2B 752786775 752787813 1038 False 1489.00 1489 92.58900 1296 2331 1 chr2B.!!$F3 1035
7 TraesCS2D01G034500 chr2A 12102018 12103695 1677 True 1930.00 1930 87.72600 625 2297 1 chr2A.!!$R2 1672
8 TraesCS2D01G034500 chr2A 12072095 12073490 1395 True 1864.00 1864 90.71700 991 2405 1 chr2A.!!$R1 1414
9 TraesCS2D01G034500 chr2A 15394541 15399846 5305 False 987.45 2385 90.94075 665 3289 4 chr2A.!!$F2 2624
10 TraesCS2D01G034500 chr2A 12047214 12048598 1384 True 936.40 1796 85.18200 995 2904 2 chr2A.!!$R3 1909
11 TraesCS2D01G034500 chr1D 137427380 137427950 570 False 977.00 977 97.72300 1 565 1 chr1D.!!$F1 564
12 TraesCS2D01G034500 chr1D 310852398 310852970 572 False 948.00 948 96.68400 1 567 1 chr1D.!!$F2 566
13 TraesCS2D01G034500 chr6D 12479673 12480244 571 True 974.00 974 97.55200 1 567 1 chr6D.!!$R1 566
14 TraesCS2D01G034500 chr6D 90435142 90435713 571 False 950.00 950 96.85300 1 565 1 chr6D.!!$F1 564
15 TraesCS2D01G034500 chr5D 265959035 265959604 569 False 965.00 965 97.36800 1 565 1 chr5D.!!$F2 564
16 TraesCS2D01G034500 chr3D 505056564 505057133 569 True 965.00 965 97.36800 1 565 1 chr3D.!!$R1 564
17 TraesCS2D01G034500 chr3D 564999865 565000433 568 False 965.00 965 97.36400 1 565 1 chr3D.!!$F1 564
18 TraesCS2D01G034500 chr4D 67454041 67454610 569 False 959.00 959 97.19300 1 565 1 chr4D.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 922 0.036671 CCCTTTCCCCACACTCGTAC 60.037 60.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2515 0.182537 TGGGTGTAGCAGCAACAGTT 59.817 50.0 0.0 0.0 33.07 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 3.679980 CGAGTACTCAACTTGATGGTTGG 59.320 47.826 22.37 0.00 44.52 3.77
121 122 5.319043 TGGGTGGATTGTACTCTTTTTCT 57.681 39.130 0.00 0.00 0.00 2.52
195 196 6.650239 TTCGTGCAATACAACAACGTATAT 57.350 33.333 0.00 0.00 31.76 0.86
493 504 7.041712 TGTGTCATTTTACTTTCGCATACTTCA 60.042 33.333 0.00 0.00 0.00 3.02
534 545 2.989253 TCTCGCTCCGCAACCTCA 60.989 61.111 0.00 0.00 0.00 3.86
585 596 3.740397 CGGACGGCCACACGAGTA 61.740 66.667 8.76 0.00 37.61 2.59
603 614 6.649973 CACGAGTACTACTATAGCTGTGGTAT 59.350 42.308 7.13 1.74 34.74 2.73
604 615 7.816513 CACGAGTACTACTATAGCTGTGGTATA 59.183 40.741 7.13 0.92 34.74 1.47
614 625 2.959707 AGCTGTGGTATAGTAGGTGAGC 59.040 50.000 0.00 0.00 0.00 4.26
615 626 2.036089 GCTGTGGTATAGTAGGTGAGCC 59.964 54.545 0.00 0.00 0.00 4.70
616 627 2.293677 CTGTGGTATAGTAGGTGAGCCG 59.706 54.545 0.00 0.00 40.50 5.52
617 628 1.612463 GTGGTATAGTAGGTGAGCCGG 59.388 57.143 0.00 0.00 40.50 6.13
646 657 4.680237 CCGGCGCAACTGTCTGGA 62.680 66.667 10.83 0.00 0.00 3.86
753 776 2.358737 CACGCACCACCCTTCTCC 60.359 66.667 0.00 0.00 0.00 3.71
770 806 4.096003 CCTCCCCCGCATTCGTGT 62.096 66.667 0.00 0.00 0.00 4.49
802 838 1.271379 CCCGTCCAACTGACCAAATCT 60.271 52.381 0.00 0.00 41.18 2.40
804 840 2.549992 CCGTCCAACTGACCAAATCTCA 60.550 50.000 0.00 0.00 41.18 3.27
811 847 5.335426 CCAACTGACCAAATCTCATCACTTG 60.335 44.000 0.00 0.00 0.00 3.16
871 922 0.036671 CCCTTTCCCCACACTCGTAC 60.037 60.000 0.00 0.00 0.00 3.67
978 1062 3.818787 CGGCCGCTGGTACGTACT 61.819 66.667 24.07 0.00 0.00 2.73
979 1063 2.103736 GGCCGCTGGTACGTACTC 59.896 66.667 24.07 14.94 0.00 2.59
980 1064 2.277756 GCCGCTGGTACGTACTCG 60.278 66.667 24.07 21.81 43.34 4.18
1004 1088 3.013921 CCTAGAGGTAGAGATCGATGGC 58.986 54.545 0.54 0.00 0.00 4.40
1217 1306 6.881570 AGTTCAATCAATTCCATTCCATTCC 58.118 36.000 0.00 0.00 0.00 3.01
1218 1307 6.441284 AGTTCAATCAATTCCATTCCATTCCA 59.559 34.615 0.00 0.00 0.00 3.53
1219 1308 7.126726 AGTTCAATCAATTCCATTCCATTCCAT 59.873 33.333 0.00 0.00 0.00 3.41
1220 1309 7.058023 TCAATCAATTCCATTCCATTCCATC 57.942 36.000 0.00 0.00 0.00 3.51
1221 1310 6.612049 TCAATCAATTCCATTCCATTCCATCA 59.388 34.615 0.00 0.00 0.00 3.07
1276 1422 0.108804 ATGGACACGCGACCTAACAG 60.109 55.000 15.93 0.00 0.00 3.16
1299 1455 1.390565 AGCAATGCTTCATCTCAGGC 58.609 50.000 0.00 0.00 33.89 4.85
1302 1458 1.598132 CAATGCTTCATCTCAGGCGAG 59.402 52.381 0.00 0.77 40.98 5.03
2010 2166 1.134699 GGCATCGATGACTGGAACTCA 60.135 52.381 29.20 0.00 31.49 3.41
2289 2445 0.689412 TCCATAGCGTCCCCATCACA 60.689 55.000 0.00 0.00 0.00 3.58
2301 2468 1.630126 CCATCACAGCCTAGGCCAGT 61.630 60.000 30.42 24.97 43.17 4.00
2303 2470 1.229177 TCACAGCCTAGGCCAGTGA 60.229 57.895 36.97 36.97 46.67 3.41
2348 2515 9.816354 TTCATCTTCGTCATGAAATAATCTACA 57.184 29.630 0.00 0.00 37.33 2.74
2385 5177 4.759693 CACCCAAGTTTGCACTGTATTCTA 59.240 41.667 0.00 0.00 31.60 2.10
2408 5200 8.737175 TCTACTGTATGAGGTTTGTAAGTACTG 58.263 37.037 0.00 0.00 0.00 2.74
2409 5201 7.299246 ACTGTATGAGGTTTGTAAGTACTGT 57.701 36.000 0.00 0.00 0.00 3.55
2422 5214 6.479006 TGTAAGTACTGTAGAAGAGTAGGCA 58.521 40.000 0.00 0.00 0.00 4.75
2434 5226 2.367567 AGAGTAGGCACGTTTCTTTCCA 59.632 45.455 0.00 0.00 0.00 3.53
2439 5231 1.002792 GGCACGTTTCTTTCCACTGTC 60.003 52.381 0.00 0.00 0.00 3.51
2443 5235 4.124238 CACGTTTCTTTCCACTGTCCTAA 58.876 43.478 0.00 0.00 0.00 2.69
2480 5281 8.642908 TTATTGTTGAGATCGTTGTGGTATAG 57.357 34.615 0.00 0.00 0.00 1.31
2589 5391 4.093011 CCTATGGGATAGACCTCAGAAGG 58.907 52.174 0.00 0.00 41.11 3.46
2631 5433 9.643693 GGCACCAAATGGAAATAATAAGATATG 57.356 33.333 6.42 0.00 38.94 1.78
2638 5440 7.905604 TGGAAATAATAAGATATGCTCCACG 57.094 36.000 0.00 0.00 29.54 4.94
2647 5449 3.935203 AGATATGCTCCACGTTTGTCAAG 59.065 43.478 0.00 0.00 0.00 3.02
2674 5476 5.809001 TCAAATTTGAGAGCCTATCACAGT 58.191 37.500 16.91 0.00 32.50 3.55
2699 5501 1.821136 GGTGAGGCCCAAAAGAATCAG 59.179 52.381 0.00 0.00 0.00 2.90
2711 5513 5.163513 CAAAAGAATCAGGCACCATACAAC 58.836 41.667 0.00 0.00 0.00 3.32
2740 5542 2.338984 GCCAGTCGAGAACACGGT 59.661 61.111 0.00 0.00 0.00 4.83
2745 5547 1.173444 AGTCGAGAACACGGTGAGCT 61.173 55.000 16.29 10.93 0.00 4.09
2747 5549 1.170290 TCGAGAACACGGTGAGCTCA 61.170 55.000 13.74 13.74 0.00 4.26
2748 5550 0.109086 CGAGAACACGGTGAGCTCAT 60.109 55.000 21.47 1.50 0.00 2.90
2749 5551 1.132453 CGAGAACACGGTGAGCTCATA 59.868 52.381 21.47 0.00 0.00 2.15
2750 5552 2.415491 CGAGAACACGGTGAGCTCATAA 60.415 50.000 21.47 0.00 0.00 1.90
2751 5553 3.182967 GAGAACACGGTGAGCTCATAAG 58.817 50.000 21.47 16.06 0.00 1.73
2752 5554 2.563179 AGAACACGGTGAGCTCATAAGT 59.437 45.455 21.47 16.72 0.00 2.24
2753 5555 3.762288 AGAACACGGTGAGCTCATAAGTA 59.238 43.478 21.47 0.00 0.00 2.24
2754 5556 3.784701 ACACGGTGAGCTCATAAGTAG 57.215 47.619 21.47 15.26 0.00 2.57
2755 5557 2.159226 ACACGGTGAGCTCATAAGTAGC 60.159 50.000 21.47 4.57 40.40 3.58
2830 5692 5.046591 TCACTCGTTCTCCATTTATCTTGGT 60.047 40.000 0.00 0.00 35.64 3.67
2930 5793 4.230863 CGCGTGTGTTGGCGTTGT 62.231 61.111 0.00 0.00 46.79 3.32
2978 5841 3.006110 CACACCTGATGGCATTTCTTTGT 59.994 43.478 0.00 0.00 36.63 2.83
3023 5897 2.762327 TCCCTCCGTAAAGCGTTTAGAT 59.238 45.455 0.00 0.00 39.32 1.98
3175 6050 2.025155 GAGAGAGCCTATCAACGTCCA 58.975 52.381 0.00 0.00 0.00 4.02
3222 6097 3.401577 GACACGATCGAGCTTGTCA 57.598 52.632 28.68 0.00 37.11 3.58
3236 6111 1.155424 TTGTCACCGCAAACCTCGAC 61.155 55.000 0.00 0.00 0.00 4.20
3289 6164 1.194098 CACGCAGCTCTGAAACAAGAG 59.806 52.381 0.29 0.00 45.52 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 6.710744 TCAAGAGAAAAAGAGTACAATCCACC 59.289 38.462 0.00 0.00 0.00 4.61
121 122 5.296151 ACATCAGGAAAACTCACTCAAGA 57.704 39.130 0.00 0.00 0.00 3.02
195 196 2.708216 TGTGGAGAAAGAGCACACAA 57.292 45.000 0.00 0.00 38.91 3.33
585 596 8.102047 CACCTACTATACCACAGCTATAGTAGT 58.898 40.741 25.33 16.81 45.91 2.73
603 614 1.471119 CTTGACCGGCTCACCTACTA 58.529 55.000 0.00 0.00 0.00 1.82
604 615 1.889530 GCTTGACCGGCTCACCTACT 61.890 60.000 0.00 0.00 0.00 2.57
609 620 3.414700 CGTGCTTGACCGGCTCAC 61.415 66.667 0.00 1.49 0.00 3.51
629 640 4.680237 TCCAGACAGTTGCGCCGG 62.680 66.667 4.18 0.00 0.00 6.13
631 642 2.280797 TGTCCAGACAGTTGCGCC 60.281 61.111 4.18 0.00 36.21 6.53
646 657 2.138320 CACTCGTGTGCTTTCATCTGT 58.862 47.619 4.47 0.00 37.38 3.41
741 764 2.125225 GGGAGGGAGAAGGGTGGT 59.875 66.667 0.00 0.00 0.00 4.16
748 771 2.286121 AATGCGGGGGAGGGAGAA 60.286 61.111 0.00 0.00 0.00 2.87
770 806 1.382695 GGACGGGAAGATGGAGGGA 60.383 63.158 0.00 0.00 0.00 4.20
811 847 1.004436 TTGGTAGGGGAAATGGGGAC 58.996 55.000 0.00 0.00 0.00 4.46
871 922 1.314730 GTACTGGTTTGGTGTGGTGG 58.685 55.000 0.00 0.00 0.00 4.61
952 1029 2.050895 CAGCGGCCGATCGAGTAG 60.051 66.667 33.48 5.30 0.00 2.57
953 1030 2.946172 TACCAGCGGCCGATCGAGTA 62.946 60.000 33.48 20.79 0.00 2.59
955 1032 3.592814 TACCAGCGGCCGATCGAG 61.593 66.667 33.48 16.70 0.00 4.04
981 1065 7.587638 CGCCATCGATCTCTACCTCTAGGTA 62.588 52.000 8.56 8.56 43.15 3.08
983 1067 3.013921 GCCATCGATCTCTACCTCTAGG 58.986 54.545 0.00 0.00 42.17 3.02
984 1068 2.675844 CGCCATCGATCTCTACCTCTAG 59.324 54.545 0.00 0.00 38.10 2.43
985 1069 2.615747 CCGCCATCGATCTCTACCTCTA 60.616 54.545 0.00 0.00 38.10 2.43
1217 1306 4.691860 AAAGAGACGGCAAAGAATGATG 57.308 40.909 0.00 0.00 0.00 3.07
1218 1307 6.678900 GCATAAAAGAGACGGCAAAGAATGAT 60.679 38.462 0.00 0.00 0.00 2.45
1219 1308 5.391950 GCATAAAAGAGACGGCAAAGAATGA 60.392 40.000 0.00 0.00 0.00 2.57
1220 1309 4.795278 GCATAAAAGAGACGGCAAAGAATG 59.205 41.667 0.00 0.00 0.00 2.67
1221 1310 4.142381 GGCATAAAAGAGACGGCAAAGAAT 60.142 41.667 0.00 0.00 0.00 2.40
1299 1455 0.735471 TCCTGATCTGCGACTTCTCG 59.265 55.000 0.00 0.00 43.28 4.04
1302 1458 2.481104 CCTCTTCCTGATCTGCGACTTC 60.481 54.545 0.00 0.00 0.00 3.01
2010 2166 1.078848 GTGCGCCATCCAGAAGACT 60.079 57.895 4.18 0.00 0.00 3.24
2076 2232 1.579429 GCGCATCCGTTCCTTGTTT 59.421 52.632 0.30 0.00 36.67 2.83
2289 2445 1.419387 GATCATTCACTGGCCTAGGCT 59.581 52.381 32.18 11.24 41.60 4.58
2324 2491 9.855361 GTTGTAGATTATTTCATGACGAAGATG 57.145 33.333 0.00 0.00 34.32 2.90
2348 2515 0.182537 TGGGTGTAGCAGCAACAGTT 59.817 50.000 0.00 0.00 33.07 3.16
2385 5177 7.299246 ACAGTACTTACAAACCTCATACAGT 57.701 36.000 0.00 0.00 0.00 3.55
2408 5200 4.437772 AGAAACGTGCCTACTCTTCTAC 57.562 45.455 0.00 0.00 0.00 2.59
2409 5201 5.464030 AAAGAAACGTGCCTACTCTTCTA 57.536 39.130 0.00 0.00 30.08 2.10
2422 5214 4.411256 TTAGGACAGTGGAAAGAAACGT 57.589 40.909 0.00 0.00 0.00 3.99
2434 5226 9.847224 CAATAAACAGGGTATATTTAGGACAGT 57.153 33.333 0.00 0.00 0.00 3.55
2443 5235 9.273016 CGATCTCAACAATAAACAGGGTATATT 57.727 33.333 0.00 0.00 0.00 1.28
2515 5316 8.483307 TTCCTAGGTTTCATCATAAACGTAAC 57.517 34.615 9.08 0.00 38.51 2.50
2631 5433 0.380378 TTGCTTGACAAACGTGGAGC 59.620 50.000 0.00 0.00 34.56 4.70
2637 5439 6.198778 TCTCAAATTTGATTGCTTGACAAACG 59.801 34.615 20.76 4.87 42.86 3.60
2638 5440 7.467557 TCTCAAATTTGATTGCTTGACAAAC 57.532 32.000 20.76 0.00 42.86 2.93
2647 5449 5.975939 GTGATAGGCTCTCAAATTTGATTGC 59.024 40.000 25.02 25.02 36.46 3.56
2674 5476 2.690653 CTTTTGGGCCTCACCGTGGA 62.691 60.000 4.53 0.00 40.62 4.02
2699 5501 0.897863 TTGCAGGGTTGTATGGTGCC 60.898 55.000 0.00 0.00 32.99 5.01
2711 5513 1.508088 GACTGGCGAAATTGCAGGG 59.492 57.895 0.00 0.00 36.28 4.45
2754 5556 6.111768 TCTTTTTAATCGAAGAGCATGAGC 57.888 37.500 0.00 0.00 43.63 4.26
2755 5557 8.393366 TCATTCTTTTTAATCGAAGAGCATGAG 58.607 33.333 0.00 0.00 43.63 2.90
2758 5560 8.896744 TGATCATTCTTTTTAATCGAAGAGCAT 58.103 29.630 0.00 0.00 43.63 3.79
2764 5566 8.676401 TGAGCATGATCATTCTTTTTAATCGAA 58.324 29.630 10.16 0.00 0.00 3.71
2765 5567 8.212317 TGAGCATGATCATTCTTTTTAATCGA 57.788 30.769 10.16 0.00 0.00 3.59
2772 5574 5.243283 GGCCTATGAGCATGATCATTCTTTT 59.757 40.000 29.66 9.63 33.59 2.27
2930 5793 0.176449 CAGAGGTCGCCATCACATGA 59.824 55.000 0.00 0.00 0.00 3.07
2978 5841 6.455647 AGTACTGATTCTTCGTCAAATGTGA 58.544 36.000 0.00 0.00 0.00 3.58
3118 5993 6.318648 TTGCATGACAAAAGTGGAGTATATCC 59.681 38.462 0.00 0.00 41.38 2.59
3236 6111 4.082523 TCCCCTGCGAAGAAGGCG 62.083 66.667 0.00 0.00 33.07 5.52
3270 6145 1.506493 CTCTTGTTTCAGAGCTGCGT 58.494 50.000 0.00 0.00 34.11 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.