AutoCloner

Multiple sequence alignment - TraesCS2D01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G034500	chr2D	100.000	3296	0	0	1	3296	13420444	13423739	0.000000e+00	6087.0
1	TraesCS2D01G034500	chr2D	84.451	2013	201	63	655	2616	11510272	11508321	0.000000e+00	1881.0
2	TraesCS2D01G034500	chr2D	92.344	1071	82	0	1278	2348	11477738	11476668	0.000000e+00	1524.0
3	TraesCS2D01G034500	chr2D	96.837	569	14	2	1	565	548737947	548738515	0.000000e+00	948.0
4	TraesCS2D01G034500	chr2D	91.418	268	8	6	1006	1273	11478045	11477793	1.450000e-93	353.0
5	TraesCS2D01G034500	chr2D	93.534	232	12	1	981	1212	11496564	11496336	3.150000e-90	342.0
6	TraesCS2D01G034500	chr2D	92.308	78	4	2	3011	3086	82187219	82187142	3.480000e-20	110.0
7	TraesCS2D01G034500	chr2D	100.000	40	0	0	2865	2904	11508572	11508533	1.270000e-09	75.0
8	TraesCS2D01G034500	chr2B	92.151	2064	103	28	566	2610	24089125	24091148	0.000000e+00	2859.0
9	TraesCS2D01G034500	chr2B	88.970	1641	131	26	1006	2616	17874026	17872406	0.000000e+00	1982.0
10	TraesCS2D01G034500	chr2B	92.589	1039	74	1	1296	2331	752786775	752787813	0.000000e+00	1489.0
11	TraesCS2D01G034500	chr2B	91.071	280	9	3	994	1273	17883304	17883041	6.720000e-97	364.0
12	TraesCS2D01G034500	chr2B	89.535	86	8	1	3010	3094	578147729	578147814	1.250000e-19	108.0
13	TraesCS2D01G034500	chr2A	91.619	1766	86	26	665	2402	15394541	15396272	0.000000e+00	2385.0
14	TraesCS2D01G034500	chr2A	87.726	1711	139	41	625	2297	12103695	12102018	0.000000e+00	1930.0
15	TraesCS2D01G034500	chr2A	90.717	1422	99	17	991	2405	12073490	12072095	0.000000e+00	1864.0
16	TraesCS2D01G034500	chr2A	90.525	1372	110	11	995	2363	12048598	12047244	0.000000e+00	1796.0
17	TraesCS2D01G034500	chr2A	95.091	550	10	6	2757	3289	15399297	15399846	0.000000e+00	850.0
18	TraesCS2D01G034500	chr2A	88.993	536	31	14	2261	2790	15398761	15399274	3.590000e-179	638.0
19	TraesCS2D01G034500	chr2A	89.299	271	17	9	927	1196	747087025	747087284	2.450000e-86	329.0
20	TraesCS2D01G034500	chr2A	79.839	124	9	10	2782	2904	12047322	12047214	3.530000e-10	76.8
21	TraesCS2D01G034500	chr2A	88.060	67	4	4	2782	2847	15396152	15396215	3.530000e-10	76.8
22	TraesCS2D01G034500	chr1D	97.723	571	7	3	1	565	137427380	137427950	0.000000e+00	977.0
23	TraesCS2D01G034500	chr1D	96.684	573	13	3	1	567	310852398	310852970	0.000000e+00	948.0
24	TraesCS2D01G034500	chr6D	97.552	572	9	3	1	567	12480244	12479673	0.000000e+00	974.0
25	TraesCS2D01G034500	chr6D	96.853	572	11	5	1	565	90435142	90435713	0.000000e+00	950.0
26	TraesCS2D01G034500	chr5D	97.368	570	10	3	1	565	265959035	265959604	0.000000e+00	965.0
27	TraesCS2D01G034500	chr5D	95.775	71	2	1	3011	3080	128577609	128577679	2.690000e-21	113.0
28	TraesCS2D01G034500	chr5D	92.500	80	3	3	3011	3087	331119008	331118929	9.670000e-21	111.0
29	TraesCS2D01G034500	chr5D	91.250	80	5	2	3011	3088	538675088	538675167	1.250000e-19	108.0
30	TraesCS2D01G034500	chr3D	97.368	570	10	3	1	565	505057133	505056564	0.000000e+00	965.0
31	TraesCS2D01G034500	chr3D	97.364	569	11	2	1	565	564999865	565000433	0.000000e+00	965.0
32	TraesCS2D01G034500	chr4D	97.193	570	11	3	1	565	67454041	67454610	0.000000e+00	959.0
33	TraesCS2D01G034500	chr5B	95.775	71	2	1	3011	3080	140965951	140966021	2.690000e-21	113.0
34	TraesCS2D01G034500	chr5B	95.714	70	2	1	3011	3079	222593031	222593100	9.670000e-21	111.0
35	TraesCS2D01G034500	chr7D	91.250	80	3	4	3011	3087	34378771	34378849	4.500000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G034500	chr2D	13420444	13423739	3295	False	6087.00	6087	100.00000	1	3296	1	chr2D.!!$F1	3295
1	TraesCS2D01G034500	chr2D	11508321	11510272	1951	True	978.00	1881	92.22550	655	2904	2	chr2D.!!$R4	2249
2	TraesCS2D01G034500	chr2D	548737947	548738515	568	False	948.00	948	96.83700	1	565	1	chr2D.!!$F2	564
3	TraesCS2D01G034500	chr2D	11476668	11478045	1377	True	938.50	1524	91.88100	1006	2348	2	chr2D.!!$R3	1342
4	TraesCS2D01G034500	chr2B	24089125	24091148	2023	False	2859.00	2859	92.15100	566	2610	1	chr2B.!!$F1	2044
5	TraesCS2D01G034500	chr2B	17872406	17874026	1620	True	1982.00	1982	88.97000	1006	2616	1	chr2B.!!$R1	1610
6	TraesCS2D01G034500	chr2B	752786775	752787813	1038	False	1489.00	1489	92.58900	1296	2331	1	chr2B.!!$F3	1035
7	TraesCS2D01G034500	chr2A	12102018	12103695	1677	True	1930.00	1930	87.72600	625	2297	1	chr2A.!!$R2	1672
8	TraesCS2D01G034500	chr2A	12072095	12073490	1395	True	1864.00	1864	90.71700	991	2405	1	chr2A.!!$R1	1414
9	TraesCS2D01G034500	chr2A	15394541	15399846	5305	False	987.45	2385	90.94075	665	3289	4	chr2A.!!$F2	2624
10	TraesCS2D01G034500	chr2A	12047214	12048598	1384	True	936.40	1796	85.18200	995	2904	2	chr2A.!!$R3	1909
11	TraesCS2D01G034500	chr1D	137427380	137427950	570	False	977.00	977	97.72300	1	565	1	chr1D.!!$F1	564
12	TraesCS2D01G034500	chr1D	310852398	310852970	572	False	948.00	948	96.68400	1	567	1	chr1D.!!$F2	566
13	TraesCS2D01G034500	chr6D	12479673	12480244	571	True	974.00	974	97.55200	1	567	1	chr6D.!!$R1	566
14	TraesCS2D01G034500	chr6D	90435142	90435713	571	False	950.00	950	96.85300	1	565	1	chr6D.!!$F1	564
15	TraesCS2D01G034500	chr5D	265959035	265959604	569	False	965.00	965	97.36800	1	565	1	chr5D.!!$F2	564
16	TraesCS2D01G034500	chr3D	505056564	505057133	569	True	965.00	965	97.36800	1	565	1	chr3D.!!$R1	564
17	TraesCS2D01G034500	chr3D	564999865	565000433	568	False	965.00	965	97.36400	1	565	1	chr3D.!!$F1	564
18	TraesCS2D01G034500	chr4D	67454041	67454610	569	False	959.00	959	97.19300	1	565	1	chr4D.!!$F1	564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
871	922	0.036671	CCCTTTCCCCACACTCGTAC	60.037	60.0	0.0	0.0	0.0	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2348	2515	0.182537	TGGGTGTAGCAGCAACAGTT	59.817	50.0	0.0	0.0	33.07	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
101	102	3.679980	CGAGTACTCAACTTGATGGTTGG	59.320	47.826	22.37	0.00	44.52	3.77
121	122	5.319043	TGGGTGGATTGTACTCTTTTTCT	57.681	39.130	0.00	0.00	0.00	2.52
195	196	6.650239	TTCGTGCAATACAACAACGTATAT	57.350	33.333	0.00	0.00	31.76	0.86
493	504	7.041712	TGTGTCATTTTACTTTCGCATACTTCA	60.042	33.333	0.00	0.00	0.00	3.02
534	545	2.989253	TCTCGCTCCGCAACCTCA	60.989	61.111	0.00	0.00	0.00	3.86
585	596	3.740397	CGGACGGCCACACGAGTA	61.740	66.667	8.76	0.00	37.61	2.59
603	614	6.649973	CACGAGTACTACTATAGCTGTGGTAT	59.350	42.308	7.13	1.74	34.74	2.73
604	615	7.816513	CACGAGTACTACTATAGCTGTGGTATA	59.183	40.741	7.13	0.92	34.74	1.47
614	625	2.959707	AGCTGTGGTATAGTAGGTGAGC	59.040	50.000	0.00	0.00	0.00	4.26
615	626	2.036089	GCTGTGGTATAGTAGGTGAGCC	59.964	54.545	0.00	0.00	0.00	4.70
616	627	2.293677	CTGTGGTATAGTAGGTGAGCCG	59.706	54.545	0.00	0.00	40.50	5.52
617	628	1.612463	GTGGTATAGTAGGTGAGCCGG	59.388	57.143	0.00	0.00	40.50	6.13
646	657	4.680237	CCGGCGCAACTGTCTGGA	62.680	66.667	10.83	0.00	0.00	3.86
753	776	2.358737	CACGCACCACCCTTCTCC	60.359	66.667	0.00	0.00	0.00	3.71
770	806	4.096003	CCTCCCCCGCATTCGTGT	62.096	66.667	0.00	0.00	0.00	4.49
802	838	1.271379	CCCGTCCAACTGACCAAATCT	60.271	52.381	0.00	0.00	41.18	2.40
804	840	2.549992	CCGTCCAACTGACCAAATCTCA	60.550	50.000	0.00	0.00	41.18	3.27
811	847	5.335426	CCAACTGACCAAATCTCATCACTTG	60.335	44.000	0.00	0.00	0.00	3.16
871	922	0.036671	CCCTTTCCCCACACTCGTAC	60.037	60.000	0.00	0.00	0.00	3.67
978	1062	3.818787	CGGCCGCTGGTACGTACT	61.819	66.667	24.07	0.00	0.00	2.73
979	1063	2.103736	GGCCGCTGGTACGTACTC	59.896	66.667	24.07	14.94	0.00	2.59
980	1064	2.277756	GCCGCTGGTACGTACTCG	60.278	66.667	24.07	21.81	43.34	4.18
1004	1088	3.013921	CCTAGAGGTAGAGATCGATGGC	58.986	54.545	0.54	0.00	0.00	4.40
1217	1306	6.881570	AGTTCAATCAATTCCATTCCATTCC	58.118	36.000	0.00	0.00	0.00	3.01
1218	1307	6.441284	AGTTCAATCAATTCCATTCCATTCCA	59.559	34.615	0.00	0.00	0.00	3.53
1219	1308	7.126726	AGTTCAATCAATTCCATTCCATTCCAT	59.873	33.333	0.00	0.00	0.00	3.41
1220	1309	7.058023	TCAATCAATTCCATTCCATTCCATC	57.942	36.000	0.00	0.00	0.00	3.51
1221	1310	6.612049	TCAATCAATTCCATTCCATTCCATCA	59.388	34.615	0.00	0.00	0.00	3.07
1276	1422	0.108804	ATGGACACGCGACCTAACAG	60.109	55.000	15.93	0.00	0.00	3.16
1299	1455	1.390565	AGCAATGCTTCATCTCAGGC	58.609	50.000	0.00	0.00	33.89	4.85
1302	1458	1.598132	CAATGCTTCATCTCAGGCGAG	59.402	52.381	0.00	0.77	40.98	5.03
2010	2166	1.134699	GGCATCGATGACTGGAACTCA	60.135	52.381	29.20	0.00	31.49	3.41
2289	2445	0.689412	TCCATAGCGTCCCCATCACA	60.689	55.000	0.00	0.00	0.00	3.58
2301	2468	1.630126	CCATCACAGCCTAGGCCAGT	61.630	60.000	30.42	24.97	43.17	4.00
2303	2470	1.229177	TCACAGCCTAGGCCAGTGA	60.229	57.895	36.97	36.97	46.67	3.41
2348	2515	9.816354	TTCATCTTCGTCATGAAATAATCTACA	57.184	29.630	0.00	0.00	37.33	2.74
2385	5177	4.759693	CACCCAAGTTTGCACTGTATTCTA	59.240	41.667	0.00	0.00	31.60	2.10
2408	5200	8.737175	TCTACTGTATGAGGTTTGTAAGTACTG	58.263	37.037	0.00	0.00	0.00	2.74
2409	5201	7.299246	ACTGTATGAGGTTTGTAAGTACTGT	57.701	36.000	0.00	0.00	0.00	3.55
2422	5214	6.479006	TGTAAGTACTGTAGAAGAGTAGGCA	58.521	40.000	0.00	0.00	0.00	4.75
2434	5226	2.367567	AGAGTAGGCACGTTTCTTTCCA	59.632	45.455	0.00	0.00	0.00	3.53
2439	5231	1.002792	GGCACGTTTCTTTCCACTGTC	60.003	52.381	0.00	0.00	0.00	3.51
2443	5235	4.124238	CACGTTTCTTTCCACTGTCCTAA	58.876	43.478	0.00	0.00	0.00	2.69
2480	5281	8.642908	TTATTGTTGAGATCGTTGTGGTATAG	57.357	34.615	0.00	0.00	0.00	1.31
2589	5391	4.093011	CCTATGGGATAGACCTCAGAAGG	58.907	52.174	0.00	0.00	41.11	3.46
2631	5433	9.643693	GGCACCAAATGGAAATAATAAGATATG	57.356	33.333	6.42	0.00	38.94	1.78
2638	5440	7.905604	TGGAAATAATAAGATATGCTCCACG	57.094	36.000	0.00	0.00	29.54	4.94
2647	5449	3.935203	AGATATGCTCCACGTTTGTCAAG	59.065	43.478	0.00	0.00	0.00	3.02
2674	5476	5.809001	TCAAATTTGAGAGCCTATCACAGT	58.191	37.500	16.91	0.00	32.50	3.55
2699	5501	1.821136	GGTGAGGCCCAAAAGAATCAG	59.179	52.381	0.00	0.00	0.00	2.90
2711	5513	5.163513	CAAAAGAATCAGGCACCATACAAC	58.836	41.667	0.00	0.00	0.00	3.32
2740	5542	2.338984	GCCAGTCGAGAACACGGT	59.661	61.111	0.00	0.00	0.00	4.83
2745	5547	1.173444	AGTCGAGAACACGGTGAGCT	61.173	55.000	16.29	10.93	0.00	4.09
2747	5549	1.170290	TCGAGAACACGGTGAGCTCA	61.170	55.000	13.74	13.74	0.00	4.26
2748	5550	0.109086	CGAGAACACGGTGAGCTCAT	60.109	55.000	21.47	1.50	0.00	2.90
2749	5551	1.132453	CGAGAACACGGTGAGCTCATA	59.868	52.381	21.47	0.00	0.00	2.15
2750	5552	2.415491	CGAGAACACGGTGAGCTCATAA	60.415	50.000	21.47	0.00	0.00	1.90
2751	5553	3.182967	GAGAACACGGTGAGCTCATAAG	58.817	50.000	21.47	16.06	0.00	1.73
2752	5554	2.563179	AGAACACGGTGAGCTCATAAGT	59.437	45.455	21.47	16.72	0.00	2.24
2753	5555	3.762288	AGAACACGGTGAGCTCATAAGTA	59.238	43.478	21.47	0.00	0.00	2.24
2754	5556	3.784701	ACACGGTGAGCTCATAAGTAG	57.215	47.619	21.47	15.26	0.00	2.57
2755	5557	2.159226	ACACGGTGAGCTCATAAGTAGC	60.159	50.000	21.47	4.57	40.40	3.58
2830	5692	5.046591	TCACTCGTTCTCCATTTATCTTGGT	60.047	40.000	0.00	0.00	35.64	3.67
2930	5793	4.230863	CGCGTGTGTTGGCGTTGT	62.231	61.111	0.00	0.00	46.79	3.32
2978	5841	3.006110	CACACCTGATGGCATTTCTTTGT	59.994	43.478	0.00	0.00	36.63	2.83
3023	5897	2.762327	TCCCTCCGTAAAGCGTTTAGAT	59.238	45.455	0.00	0.00	39.32	1.98
3175	6050	2.025155	GAGAGAGCCTATCAACGTCCA	58.975	52.381	0.00	0.00	0.00	4.02
3222	6097	3.401577	GACACGATCGAGCTTGTCA	57.598	52.632	28.68	0.00	37.11	3.58
3236	6111	1.155424	TTGTCACCGCAAACCTCGAC	61.155	55.000	0.00	0.00	0.00	4.20
3289	6164	1.194098	CACGCAGCTCTGAAACAAGAG	59.806	52.381	0.29	0.00	45.52	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
101	102	6.710744	TCAAGAGAAAAAGAGTACAATCCACC	59.289	38.462	0.00	0.00	0.00	4.61
121	122	5.296151	ACATCAGGAAAACTCACTCAAGA	57.704	39.130	0.00	0.00	0.00	3.02
195	196	2.708216	TGTGGAGAAAGAGCACACAA	57.292	45.000	0.00	0.00	38.91	3.33
585	596	8.102047	CACCTACTATACCACAGCTATAGTAGT	58.898	40.741	25.33	16.81	45.91	2.73
603	614	1.471119	CTTGACCGGCTCACCTACTA	58.529	55.000	0.00	0.00	0.00	1.82
604	615	1.889530	GCTTGACCGGCTCACCTACT	61.890	60.000	0.00	0.00	0.00	2.57
609	620	3.414700	CGTGCTTGACCGGCTCAC	61.415	66.667	0.00	1.49	0.00	3.51
629	640	4.680237	TCCAGACAGTTGCGCCGG	62.680	66.667	4.18	0.00	0.00	6.13
631	642	2.280797	TGTCCAGACAGTTGCGCC	60.281	61.111	4.18	0.00	36.21	6.53
646	657	2.138320	CACTCGTGTGCTTTCATCTGT	58.862	47.619	4.47	0.00	37.38	3.41
741	764	2.125225	GGGAGGGAGAAGGGTGGT	59.875	66.667	0.00	0.00	0.00	4.16
748	771	2.286121	AATGCGGGGGAGGGAGAA	60.286	61.111	0.00	0.00	0.00	2.87
770	806	1.382695	GGACGGGAAGATGGAGGGA	60.383	63.158	0.00	0.00	0.00	4.20
811	847	1.004436	TTGGTAGGGGAAATGGGGAC	58.996	55.000	0.00	0.00	0.00	4.46
871	922	1.314730	GTACTGGTTTGGTGTGGTGG	58.685	55.000	0.00	0.00	0.00	4.61
952	1029	2.050895	CAGCGGCCGATCGAGTAG	60.051	66.667	33.48	5.30	0.00	2.57
953	1030	2.946172	TACCAGCGGCCGATCGAGTA	62.946	60.000	33.48	20.79	0.00	2.59
955	1032	3.592814	TACCAGCGGCCGATCGAG	61.593	66.667	33.48	16.70	0.00	4.04
981	1065	7.587638	CGCCATCGATCTCTACCTCTAGGTA	62.588	52.000	8.56	8.56	43.15	3.08
983	1067	3.013921	GCCATCGATCTCTACCTCTAGG	58.986	54.545	0.00	0.00	42.17	3.02
984	1068	2.675844	CGCCATCGATCTCTACCTCTAG	59.324	54.545	0.00	0.00	38.10	2.43
985	1069	2.615747	CCGCCATCGATCTCTACCTCTA	60.616	54.545	0.00	0.00	38.10	2.43
1217	1306	4.691860	AAAGAGACGGCAAAGAATGATG	57.308	40.909	0.00	0.00	0.00	3.07
1218	1307	6.678900	GCATAAAAGAGACGGCAAAGAATGAT	60.679	38.462	0.00	0.00	0.00	2.45
1219	1308	5.391950	GCATAAAAGAGACGGCAAAGAATGA	60.392	40.000	0.00	0.00	0.00	2.57
1220	1309	4.795278	GCATAAAAGAGACGGCAAAGAATG	59.205	41.667	0.00	0.00	0.00	2.67
1221	1310	4.142381	GGCATAAAAGAGACGGCAAAGAAT	60.142	41.667	0.00	0.00	0.00	2.40
1299	1455	0.735471	TCCTGATCTGCGACTTCTCG	59.265	55.000	0.00	0.00	43.28	4.04
1302	1458	2.481104	CCTCTTCCTGATCTGCGACTTC	60.481	54.545	0.00	0.00	0.00	3.01
2010	2166	1.078848	GTGCGCCATCCAGAAGACT	60.079	57.895	4.18	0.00	0.00	3.24
2076	2232	1.579429	GCGCATCCGTTCCTTGTTT	59.421	52.632	0.30	0.00	36.67	2.83
2289	2445	1.419387	GATCATTCACTGGCCTAGGCT	59.581	52.381	32.18	11.24	41.60	4.58
2324	2491	9.855361	GTTGTAGATTATTTCATGACGAAGATG	57.145	33.333	0.00	0.00	34.32	2.90
2348	2515	0.182537	TGGGTGTAGCAGCAACAGTT	59.817	50.000	0.00	0.00	33.07	3.16
2385	5177	7.299246	ACAGTACTTACAAACCTCATACAGT	57.701	36.000	0.00	0.00	0.00	3.55
2408	5200	4.437772	AGAAACGTGCCTACTCTTCTAC	57.562	45.455	0.00	0.00	0.00	2.59
2409	5201	5.464030	AAAGAAACGTGCCTACTCTTCTA	57.536	39.130	0.00	0.00	30.08	2.10
2422	5214	4.411256	TTAGGACAGTGGAAAGAAACGT	57.589	40.909	0.00	0.00	0.00	3.99
2434	5226	9.847224	CAATAAACAGGGTATATTTAGGACAGT	57.153	33.333	0.00	0.00	0.00	3.55
2443	5235	9.273016	CGATCTCAACAATAAACAGGGTATATT	57.727	33.333	0.00	0.00	0.00	1.28
2515	5316	8.483307	TTCCTAGGTTTCATCATAAACGTAAC	57.517	34.615	9.08	0.00	38.51	2.50
2631	5433	0.380378	TTGCTTGACAAACGTGGAGC	59.620	50.000	0.00	0.00	34.56	4.70
2637	5439	6.198778	TCTCAAATTTGATTGCTTGACAAACG	59.801	34.615	20.76	4.87	42.86	3.60
2638	5440	7.467557	TCTCAAATTTGATTGCTTGACAAAC	57.532	32.000	20.76	0.00	42.86	2.93
2647	5449	5.975939	GTGATAGGCTCTCAAATTTGATTGC	59.024	40.000	25.02	25.02	36.46	3.56
2674	5476	2.690653	CTTTTGGGCCTCACCGTGGA	62.691	60.000	4.53	0.00	40.62	4.02
2699	5501	0.897863	TTGCAGGGTTGTATGGTGCC	60.898	55.000	0.00	0.00	32.99	5.01
2711	5513	1.508088	GACTGGCGAAATTGCAGGG	59.492	57.895	0.00	0.00	36.28	4.45
2754	5556	6.111768	TCTTTTTAATCGAAGAGCATGAGC	57.888	37.500	0.00	0.00	43.63	4.26
2755	5557	8.393366	TCATTCTTTTTAATCGAAGAGCATGAG	58.607	33.333	0.00	0.00	43.63	2.90
2758	5560	8.896744	TGATCATTCTTTTTAATCGAAGAGCAT	58.103	29.630	0.00	0.00	43.63	3.79
2764	5566	8.676401	TGAGCATGATCATTCTTTTTAATCGAA	58.324	29.630	10.16	0.00	0.00	3.71
2765	5567	8.212317	TGAGCATGATCATTCTTTTTAATCGA	57.788	30.769	10.16	0.00	0.00	3.59
2772	5574	5.243283	GGCCTATGAGCATGATCATTCTTTT	59.757	40.000	29.66	9.63	33.59	2.27
2930	5793	0.176449	CAGAGGTCGCCATCACATGA	59.824	55.000	0.00	0.00	0.00	3.07
2978	5841	6.455647	AGTACTGATTCTTCGTCAAATGTGA	58.544	36.000	0.00	0.00	0.00	3.58
3118	5993	6.318648	TTGCATGACAAAAGTGGAGTATATCC	59.681	38.462	0.00	0.00	41.38	2.59
3236	6111	4.082523	TCCCCTGCGAAGAAGGCG	62.083	66.667	0.00	0.00	33.07	5.52
3270	6145	1.506493	CTCTTGTTTCAGAGCTGCGT	58.494	50.000	0.00	0.00	34.11	5.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.