Multiple sequence alignment - TraesCS2D01G034200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G034200 chr2D 100.000 6274 0 0 1 6274 13210125 13216398 0.000000e+00 11587.0
1 TraesCS2D01G034200 chr2D 95.972 4667 171 13 991 5652 380087291 380082637 0.000000e+00 7561.0
2 TraesCS2D01G034200 chr2D 98.482 3097 24 7 2571 5656 46679685 46682769 0.000000e+00 5437.0
3 TraesCS2D01G034200 chr2D 99.247 1593 12 0 994 2586 46677712 46679304 0.000000e+00 2876.0
4 TraesCS2D01G034200 chr2D 86.949 590 10 10 5656 6201 46683735 46684301 9.000000e-168 601.0
5 TraesCS2D01G034200 chr2D 91.005 189 14 2 992 1180 46675683 46675868 1.040000e-62 252.0
6 TraesCS2D01G034200 chr2D 95.946 148 6 0 130 277 189381742 189381889 2.260000e-59 241.0
7 TraesCS2D01G034200 chr2D 95.364 151 7 0 130 280 189383891 189383741 2.260000e-59 241.0
8 TraesCS2D01G034200 chr2D 98.246 57 1 0 1 57 189381702 189381758 4.000000e-17 100.0
9 TraesCS2D01G034200 chr2D 98.246 57 1 0 1 57 189383931 189383875 4.000000e-17 100.0
10 TraesCS2D01G034200 chr3D 97.532 4619 98 3 992 5596 426166360 426161744 0.000000e+00 7884.0
11 TraesCS2D01G034200 chr3D 96.022 4650 146 10 1031 5656 531348528 531353162 0.000000e+00 7526.0
12 TraesCS2D01G034200 chr3D 96.520 4224 128 11 992 5207 464058665 464054453 0.000000e+00 6968.0
13 TraesCS2D01G034200 chr3D 85.714 511 24 20 5656 6141 531354167 531354653 1.570000e-135 494.0
14 TraesCS2D01G034200 chr3D 90.719 334 15 9 5246 5567 464054471 464054142 1.250000e-116 431.0
15 TraesCS2D01G034200 chr3D 91.176 68 3 1 6137 6201 531354676 531354743 8.660000e-14 89.8
16 TraesCS2D01G034200 chr3D 90.164 61 3 1 6141 6201 531376035 531375978 6.740000e-10 76.8
17 TraesCS2D01G034200 chr3A 96.894 4669 131 3 994 5650 665954713 665959379 0.000000e+00 7806.0
18 TraesCS2D01G034200 chr3A 88.852 610 30 14 422 996 411266865 411266259 0.000000e+00 715.0
19 TraesCS2D01G034200 chr3A 91.785 353 11 4 276 626 80292538 80292874 5.690000e-130 475.0
20 TraesCS2D01G034200 chr3A 87.500 352 21 9 279 626 623903069 623902737 9.870000e-103 385.0
21 TraesCS2D01G034200 chr3B 96.724 4365 121 6 994 5354 702682142 702686488 0.000000e+00 7249.0
22 TraesCS2D01G034200 chr3B 86.218 624 30 24 422 993 534168437 534169056 5.340000e-175 625.0
23 TraesCS2D01G034200 chr3B 86.173 405 18 12 624 993 801128671 801129072 2.720000e-108 403.0
24 TraesCS2D01G034200 chr3B 82.558 344 39 9 5334 5661 702686509 702686847 3.700000e-72 283.0
25 TraesCS2D01G034200 chr3B 94.702 151 8 0 130 280 401236562 401236712 1.050000e-57 235.0
26 TraesCS2D01G034200 chr3B 98.246 57 1 0 1 57 401236522 401236578 4.000000e-17 100.0
27 TraesCS2D01G034200 chr3B 97.059 34 1 0 6141 6174 702701042 702701009 2.440000e-04 58.4
28 TraesCS2D01G034200 chr3B 100.000 29 0 0 179 207 53186908 53186880 3.000000e-03 54.7
29 TraesCS2D01G034200 chr6D 75.676 3770 829 72 1482 5210 130171722 130175444 0.000000e+00 1801.0
30 TraesCS2D01G034200 chr6D 90.746 389 13 6 624 993 79982509 79982893 1.210000e-136 497.0
31 TraesCS2D01G034200 chr6D 90.423 355 14 7 276 626 67696144 67696482 3.450000e-122 449.0
32 TraesCS2D01G034200 chr6D 90.625 352 14 6 278 626 292046937 292047272 3.450000e-122 449.0
33 TraesCS2D01G034200 chr6D 97.938 97 2 0 1 97 121090822 121090726 1.080000e-37 169.0
34 TraesCS2D01G034200 chr6D 100.000 57 0 0 1 57 248264463 248264407 8.600000e-19 106.0
35 TraesCS2D01G034200 chr6D 90.667 75 1 4 118 192 121090474 121090406 1.860000e-15 95.3
36 TraesCS2D01G034200 chr6D 100.000 39 0 0 13 51 467431544 467431506 8.720000e-09 73.1
37 TraesCS2D01G034200 chr6B 75.415 3791 844 73 1482 5231 228690874 228694617 0.000000e+00 1757.0
38 TraesCS2D01G034200 chr6B 86.548 617 35 16 422 993 423096919 423097532 2.470000e-178 636.0
39 TraesCS2D01G034200 chr6B 84.874 238 27 5 4404 4632 504590743 504590506 1.360000e-56 231.0
40 TraesCS2D01G034200 chr6B 97.222 108 3 0 1 108 213153212 213153105 3.860000e-42 183.0
41 TraesCS2D01G034200 chr6B 86.239 109 15 0 4634 4742 504590213 504590105 1.100000e-22 119.0
42 TraesCS2D01G034200 chr6B 91.429 70 0 3 123 192 213152858 213152795 2.410000e-14 91.6
43 TraesCS2D01G034200 chr6B 100.000 29 0 0 179 207 427228935 427228963 3.000000e-03 54.7
44 TraesCS2D01G034200 chr5B 94.306 720 35 3 276 995 428106803 428106090 0.000000e+00 1098.0
45 TraesCS2D01G034200 chr5B 91.031 747 31 7 276 996 475581741 475582477 0.000000e+00 976.0
46 TraesCS2D01G034200 chr5B 86.443 627 29 20 422 996 672815746 672815124 2.470000e-178 636.0
47 TraesCS2D01G034200 chr5D 93.108 740 23 10 276 996 395251380 395252110 0.000000e+00 1059.0
48 TraesCS2D01G034200 chr5D 91.603 131 9 2 130 258 111997490 111997360 5.000000e-41 180.0
49 TraesCS2D01G034200 chr5D 100.000 57 0 0 1 57 111997530 111997474 8.600000e-19 106.0
50 TraesCS2D01G034200 chr2A 92.157 714 34 4 285 982 655938542 655939249 0.000000e+00 989.0
51 TraesCS2D01G034200 chr2A 92.000 75 0 3 118 192 410337930 410337998 4.000000e-17 100.0
52 TraesCS2D01G034200 chr2A 100.000 29 0 0 179 207 436694865 436694893 3.000000e-03 54.7
53 TraesCS2D01G034200 chrUn 93.098 594 19 3 422 996 87097083 87096493 0.000000e+00 850.0
54 TraesCS2D01G034200 chr6A 88.361 610 33 14 422 996 26324847 26324241 0.000000e+00 699.0
55 TraesCS2D01G034200 chr6A 91.111 135 10 2 4498 4632 456719549 456719681 1.390000e-41 182.0
56 TraesCS2D01G034200 chr6A 84.956 113 13 3 4634 4742 456719984 456720096 1.850000e-20 111.0
57 TraesCS2D01G034200 chr6A 100.000 29 0 0 179 207 75130115 75130087 3.000000e-03 54.7
58 TraesCS2D01G034200 chr1A 88.361 610 33 14 422 996 508958666 508958060 0.000000e+00 699.0
59 TraesCS2D01G034200 chr1A 89.333 75 2 3 118 192 542956634 542956702 8.660000e-14 89.8
60 TraesCS2D01G034200 chr4D 88.226 620 25 14 422 996 124253718 124253102 0.000000e+00 697.0
61 TraesCS2D01G034200 chr7A 90.730 356 10 8 276 627 18869456 18869120 2.670000e-123 453.0
62 TraesCS2D01G034200 chr7B 86.730 422 12 9 607 990 126793453 126793868 4.490000e-116 429.0
63 TraesCS2D01G034200 chr1D 96.689 151 5 0 130 280 10351727 10351577 1.040000e-62 252.0
64 TraesCS2D01G034200 chr1D 100.000 57 0 0 1 57 10351767 10351711 8.600000e-19 106.0
65 TraesCS2D01G034200 chr7D 95.192 104 5 0 276 379 111370522 111370419 1.400000e-36 165.0
66 TraesCS2D01G034200 chr2B 96.154 52 2 0 6202 6253 24093413 24093362 1.120000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G034200 chr2D 13210125 13216398 6273 False 11587.000000 11587 100.000000 1 6274 1 chr2D.!!$F1 6273
1 TraesCS2D01G034200 chr2D 380082637 380087291 4654 True 7561.000000 7561 95.972000 991 5652 1 chr2D.!!$R1 4661
2 TraesCS2D01G034200 chr2D 46675683 46684301 8618 False 2291.500000 5437 93.920750 992 6201 4 chr2D.!!$F2 5209
3 TraesCS2D01G034200 chr3D 426161744 426166360 4616 True 7884.000000 7884 97.532000 992 5596 1 chr3D.!!$R1 4604
4 TraesCS2D01G034200 chr3D 464054142 464058665 4523 True 3699.500000 6968 93.619500 992 5567 2 chr3D.!!$R3 4575
5 TraesCS2D01G034200 chr3D 531348528 531354743 6215 False 2703.266667 7526 90.970667 1031 6201 3 chr3D.!!$F1 5170
6 TraesCS2D01G034200 chr3A 665954713 665959379 4666 False 7806.000000 7806 96.894000 994 5650 1 chr3A.!!$F2 4656
7 TraesCS2D01G034200 chr3A 411266259 411266865 606 True 715.000000 715 88.852000 422 996 1 chr3A.!!$R1 574
8 TraesCS2D01G034200 chr3B 702682142 702686847 4705 False 3766.000000 7249 89.641000 994 5661 2 chr3B.!!$F4 4667
9 TraesCS2D01G034200 chr3B 534168437 534169056 619 False 625.000000 625 86.218000 422 993 1 chr3B.!!$F1 571
10 TraesCS2D01G034200 chr6D 130171722 130175444 3722 False 1801.000000 1801 75.676000 1482 5210 1 chr6D.!!$F3 3728
11 TraesCS2D01G034200 chr6B 228690874 228694617 3743 False 1757.000000 1757 75.415000 1482 5231 1 chr6B.!!$F1 3749
12 TraesCS2D01G034200 chr6B 423096919 423097532 613 False 636.000000 636 86.548000 422 993 1 chr6B.!!$F2 571
13 TraesCS2D01G034200 chr5B 428106090 428106803 713 True 1098.000000 1098 94.306000 276 995 1 chr5B.!!$R1 719
14 TraesCS2D01G034200 chr5B 475581741 475582477 736 False 976.000000 976 91.031000 276 996 1 chr5B.!!$F1 720
15 TraesCS2D01G034200 chr5B 672815124 672815746 622 True 636.000000 636 86.443000 422 996 1 chr5B.!!$R2 574
16 TraesCS2D01G034200 chr5D 395251380 395252110 730 False 1059.000000 1059 93.108000 276 996 1 chr5D.!!$F1 720
17 TraesCS2D01G034200 chr2A 655938542 655939249 707 False 989.000000 989 92.157000 285 982 1 chr2A.!!$F3 697
18 TraesCS2D01G034200 chrUn 87096493 87097083 590 True 850.000000 850 93.098000 422 996 1 chrUn.!!$R1 574
19 TraesCS2D01G034200 chr6A 26324241 26324847 606 True 699.000000 699 88.361000 422 996 1 chr6A.!!$R1 574
20 TraesCS2D01G034200 chr1A 508958060 508958666 606 True 699.000000 699 88.361000 422 996 1 chr1A.!!$R1 574
21 TraesCS2D01G034200 chr4D 124253102 124253718 616 True 697.000000 697 88.226000 422 996 1 chr4D.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.740737 GGACTTGTTGTTGCTGCTGT 59.259 50.000 0.00 0.00 0.00 4.40 F
1045 1147 0.467384 TCCCTGCTTGAGCTCTATGC 59.533 55.000 16.19 15.84 42.66 3.14 F
2813 5345 0.320421 GCACAAACCTCACCGAGCTA 60.320 55.000 0.00 0.00 0.00 3.32 F
2964 5496 3.514706 TCTTTTGCAGATCTCTCTCAGCT 59.485 43.478 0.00 0.00 0.00 4.24 F
4486 7031 1.803998 CGCGATCAAGAGGCTTCATGA 60.804 52.381 6.20 6.20 35.70 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 3974 0.529378 CCAATTGCAGGGCTCAGTTC 59.471 55.000 0.00 0.00 0.00 3.01 R
2863 5395 2.236395 TCCAGACTAACTAAAGGCAGCC 59.764 50.000 1.84 1.84 0.00 4.85 R
4486 7031 1.217057 ACCCTGGAACTGATGGCCAT 61.217 55.000 20.96 20.96 0.00 4.40 R
4965 7519 1.211212 TGTAAGCAGCTCCAGCATGAT 59.789 47.619 0.00 0.00 45.16 2.45 R
6254 9951 0.606401 GCTAGCTGCTGGGTTTGTGA 60.606 55.000 13.43 0.00 38.95 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.856490 CTTAAAATGAAGTGCAGTACTGTTTT 57.144 30.769 23.44 19.69 40.26 2.43
26 27 8.627487 TTAAAATGAAGTGCAGTACTGTTTTG 57.373 30.769 23.44 0.00 40.26 2.44
27 28 4.836125 ATGAAGTGCAGTACTGTTTTGG 57.164 40.909 23.44 0.00 40.26 3.28
28 29 3.616219 TGAAGTGCAGTACTGTTTTGGT 58.384 40.909 23.44 5.32 40.26 3.67
29 30 4.013728 TGAAGTGCAGTACTGTTTTGGTT 58.986 39.130 23.44 9.23 40.26 3.67
30 31 4.142491 TGAAGTGCAGTACTGTTTTGGTTG 60.142 41.667 23.44 0.00 40.26 3.77
31 32 2.099098 AGTGCAGTACTGTTTTGGTTGC 59.901 45.455 23.44 7.79 38.49 4.17
32 33 2.095461 TGCAGTACTGTTTTGGTTGCA 58.905 42.857 23.44 10.36 37.70 4.08
33 34 2.098934 TGCAGTACTGTTTTGGTTGCAG 59.901 45.455 23.44 0.00 35.41 4.41
34 35 2.099098 GCAGTACTGTTTTGGTTGCAGT 59.901 45.455 23.44 0.00 44.49 4.40
35 36 3.314080 GCAGTACTGTTTTGGTTGCAGTA 59.686 43.478 23.44 0.00 42.60 2.74
36 37 4.554723 GCAGTACTGTTTTGGTTGCAGTAG 60.555 45.833 23.44 0.00 43.60 2.57
37 38 4.574828 CAGTACTGTTTTGGTTGCAGTAGT 59.425 41.667 15.06 4.98 45.09 2.73
38 39 5.065988 CAGTACTGTTTTGGTTGCAGTAGTT 59.934 40.000 15.06 0.00 43.04 2.24
39 40 5.650703 AGTACTGTTTTGGTTGCAGTAGTTT 59.349 36.000 0.00 0.00 43.04 2.66
40 41 5.400066 ACTGTTTTGGTTGCAGTAGTTTT 57.600 34.783 0.00 0.00 41.12 2.43
41 42 5.789521 ACTGTTTTGGTTGCAGTAGTTTTT 58.210 33.333 0.00 0.00 41.12 1.94
42 43 5.867174 ACTGTTTTGGTTGCAGTAGTTTTTC 59.133 36.000 0.00 0.00 41.12 2.29
43 44 5.784177 TGTTTTGGTTGCAGTAGTTTTTCA 58.216 33.333 0.00 0.00 0.00 2.69
44 45 5.866633 TGTTTTGGTTGCAGTAGTTTTTCAG 59.133 36.000 0.00 0.00 0.00 3.02
45 46 5.652994 TTTGGTTGCAGTAGTTTTTCAGT 57.347 34.783 0.00 0.00 0.00 3.41
46 47 6.761099 TTTGGTTGCAGTAGTTTTTCAGTA 57.239 33.333 0.00 0.00 0.00 2.74
47 48 6.371809 TTGGTTGCAGTAGTTTTTCAGTAG 57.628 37.500 0.00 0.00 0.00 2.57
48 49 4.274950 TGGTTGCAGTAGTTTTTCAGTAGC 59.725 41.667 0.00 0.00 0.00 3.58
49 50 4.515567 GGTTGCAGTAGTTTTTCAGTAGCT 59.484 41.667 0.00 0.00 0.00 3.32
50 51 5.008712 GGTTGCAGTAGTTTTTCAGTAGCTT 59.991 40.000 0.00 0.00 0.00 3.74
51 52 6.204108 GGTTGCAGTAGTTTTTCAGTAGCTTA 59.796 38.462 0.00 0.00 0.00 3.09
52 53 7.255001 GGTTGCAGTAGTTTTTCAGTAGCTTAA 60.255 37.037 0.00 0.00 0.00 1.85
53 54 7.795482 TGCAGTAGTTTTTCAGTAGCTTAAA 57.205 32.000 0.00 0.00 0.00 1.52
54 55 8.391075 TGCAGTAGTTTTTCAGTAGCTTAAAT 57.609 30.769 0.00 0.00 0.00 1.40
55 56 8.846211 TGCAGTAGTTTTTCAGTAGCTTAAATT 58.154 29.630 0.00 0.00 0.00 1.82
56 57 9.678941 GCAGTAGTTTTTCAGTAGCTTAAATTT 57.321 29.630 0.00 0.00 0.00 1.82
72 73 8.914011 AGCTTAAATTTGTCTTGTTAACTTCCT 58.086 29.630 7.22 0.00 0.00 3.36
73 74 8.968242 GCTTAAATTTGTCTTGTTAACTTCCTG 58.032 33.333 7.22 0.00 0.00 3.86
77 78 5.689383 TTGTCTTGTTAACTTCCTGATGC 57.311 39.130 7.22 0.00 0.00 3.91
78 79 4.973168 TGTCTTGTTAACTTCCTGATGCT 58.027 39.130 7.22 0.00 0.00 3.79
79 80 5.376625 TGTCTTGTTAACTTCCTGATGCTT 58.623 37.500 7.22 0.00 0.00 3.91
80 81 5.827797 TGTCTTGTTAACTTCCTGATGCTTT 59.172 36.000 7.22 0.00 0.00 3.51
81 82 6.017109 TGTCTTGTTAACTTCCTGATGCTTTC 60.017 38.462 7.22 0.00 0.00 2.62
82 83 6.017109 GTCTTGTTAACTTCCTGATGCTTTCA 60.017 38.462 7.22 0.00 0.00 2.69
83 84 6.716628 TCTTGTTAACTTCCTGATGCTTTCAT 59.283 34.615 7.22 0.00 32.72 2.57
84 85 7.882791 TCTTGTTAACTTCCTGATGCTTTCATA 59.117 33.333 7.22 0.00 32.72 2.15
85 86 7.994425 TGTTAACTTCCTGATGCTTTCATAA 57.006 32.000 7.22 0.00 32.72 1.90
86 87 8.579850 TGTTAACTTCCTGATGCTTTCATAAT 57.420 30.769 7.22 0.00 32.72 1.28
87 88 9.023962 TGTTAACTTCCTGATGCTTTCATAATT 57.976 29.630 7.22 0.00 32.72 1.40
88 89 9.508567 GTTAACTTCCTGATGCTTTCATAATTC 57.491 33.333 0.00 0.00 32.72 2.17
89 90 7.951347 AACTTCCTGATGCTTTCATAATTCT 57.049 32.000 0.00 0.00 32.72 2.40
90 91 7.330900 ACTTCCTGATGCTTTCATAATTCTG 57.669 36.000 0.00 0.00 32.72 3.02
91 92 6.888632 ACTTCCTGATGCTTTCATAATTCTGT 59.111 34.615 0.00 0.00 32.72 3.41
92 93 7.395489 ACTTCCTGATGCTTTCATAATTCTGTT 59.605 33.333 0.00 0.00 32.72 3.16
93 94 8.806429 TTCCTGATGCTTTCATAATTCTGTTA 57.194 30.769 0.00 0.00 32.72 2.41
94 95 8.806429 TCCTGATGCTTTCATAATTCTGTTAA 57.194 30.769 0.00 0.00 32.72 2.01
95 96 9.412460 TCCTGATGCTTTCATAATTCTGTTAAT 57.588 29.630 0.00 0.00 32.72 1.40
101 102 9.844790 TGCTTTCATAATTCTGTTAATTCTGTG 57.155 29.630 0.00 0.00 0.00 3.66
102 103 8.801913 GCTTTCATAATTCTGTTAATTCTGTGC 58.198 33.333 0.00 0.00 0.00 4.57
103 104 9.844790 CTTTCATAATTCTGTTAATTCTGTGCA 57.155 29.630 0.00 0.00 0.00 4.57
104 105 9.844790 TTTCATAATTCTGTTAATTCTGTGCAG 57.155 29.630 0.00 0.00 0.00 4.41
105 106 7.475015 TCATAATTCTGTTAATTCTGTGCAGC 58.525 34.615 0.00 0.00 0.00 5.25
106 107 5.972107 AATTCTGTTAATTCTGTGCAGCT 57.028 34.783 0.00 0.00 0.00 4.24
107 108 8.615211 CATAATTCTGTTAATTCTGTGCAGCTA 58.385 33.333 0.00 0.00 0.00 3.32
108 109 7.636150 AATTCTGTTAATTCTGTGCAGCTAT 57.364 32.000 0.00 0.00 0.00 2.97
109 110 7.636150 ATTCTGTTAATTCTGTGCAGCTATT 57.364 32.000 0.00 0.61 0.00 1.73
110 111 7.452880 TTCTGTTAATTCTGTGCAGCTATTT 57.547 32.000 0.00 0.00 0.00 1.40
111 112 7.452880 TCTGTTAATTCTGTGCAGCTATTTT 57.547 32.000 0.00 0.00 0.00 1.82
112 113 8.560355 TCTGTTAATTCTGTGCAGCTATTTTA 57.440 30.769 0.00 0.00 0.00 1.52
113 114 8.668353 TCTGTTAATTCTGTGCAGCTATTTTAG 58.332 33.333 0.00 0.00 0.00 1.85
114 115 8.335532 TGTTAATTCTGTGCAGCTATTTTAGT 57.664 30.769 0.00 0.00 0.00 2.24
115 116 8.236586 TGTTAATTCTGTGCAGCTATTTTAGTG 58.763 33.333 0.00 0.00 0.00 2.74
116 117 6.824305 AATTCTGTGCAGCTATTTTAGTGT 57.176 33.333 0.00 0.00 0.00 3.55
117 118 6.824305 ATTCTGTGCAGCTATTTTAGTGTT 57.176 33.333 0.00 0.00 0.00 3.32
118 119 5.862924 TCTGTGCAGCTATTTTAGTGTTC 57.137 39.130 0.00 0.00 0.00 3.18
119 120 5.551233 TCTGTGCAGCTATTTTAGTGTTCT 58.449 37.500 0.00 0.00 0.00 3.01
120 121 5.997746 TCTGTGCAGCTATTTTAGTGTTCTT 59.002 36.000 0.00 0.00 0.00 2.52
121 122 6.147821 TCTGTGCAGCTATTTTAGTGTTCTTC 59.852 38.462 0.00 0.00 0.00 2.87
122 123 5.997746 TGTGCAGCTATTTTAGTGTTCTTCT 59.002 36.000 0.00 0.00 0.00 2.85
123 124 6.147821 TGTGCAGCTATTTTAGTGTTCTTCTC 59.852 38.462 0.00 0.00 0.00 2.87
124 125 6.370166 GTGCAGCTATTTTAGTGTTCTTCTCT 59.630 38.462 0.00 0.00 0.00 3.10
125 126 6.936900 TGCAGCTATTTTAGTGTTCTTCTCTT 59.063 34.615 0.00 0.00 0.00 2.85
126 127 7.118390 TGCAGCTATTTTAGTGTTCTTCTCTTC 59.882 37.037 0.00 0.00 0.00 2.87
127 128 7.333174 GCAGCTATTTTAGTGTTCTTCTCTTCT 59.667 37.037 0.00 0.00 0.00 2.85
128 129 8.868916 CAGCTATTTTAGTGTTCTTCTCTTCTC 58.131 37.037 0.00 0.00 0.00 2.87
129 130 8.811994 AGCTATTTTAGTGTTCTTCTCTTCTCT 58.188 33.333 0.00 0.00 0.00 3.10
130 131 9.430623 GCTATTTTAGTGTTCTTCTCTTCTCTT 57.569 33.333 0.00 0.00 0.00 2.85
133 134 8.879342 TTTTAGTGTTCTTCTCTTCTCTTCAG 57.121 34.615 0.00 0.00 0.00 3.02
134 135 7.589958 TTAGTGTTCTTCTCTTCTCTTCAGT 57.410 36.000 0.00 0.00 0.00 3.41
135 136 8.693120 TTAGTGTTCTTCTCTTCTCTTCAGTA 57.307 34.615 0.00 0.00 0.00 2.74
136 137 7.589958 AGTGTTCTTCTCTTCTCTTCAGTAA 57.410 36.000 0.00 0.00 0.00 2.24
137 138 8.012957 AGTGTTCTTCTCTTCTCTTCAGTAAA 57.987 34.615 0.00 0.00 0.00 2.01
138 139 8.646900 AGTGTTCTTCTCTTCTCTTCAGTAAAT 58.353 33.333 0.00 0.00 0.00 1.40
139 140 9.267084 GTGTTCTTCTCTTCTCTTCAGTAAATT 57.733 33.333 0.00 0.00 0.00 1.82
166 167 9.907229 AAATTTAGGAGTAGGATTAGTTCTTGG 57.093 33.333 0.00 0.00 0.00 3.61
167 168 8.855804 ATTTAGGAGTAGGATTAGTTCTTGGA 57.144 34.615 0.00 0.00 0.00 3.53
168 169 7.899648 TTAGGAGTAGGATTAGTTCTTGGAG 57.100 40.000 0.00 0.00 0.00 3.86
169 170 5.844601 AGGAGTAGGATTAGTTCTTGGAGT 58.155 41.667 0.00 0.00 0.00 3.85
170 171 6.982899 AGGAGTAGGATTAGTTCTTGGAGTA 58.017 40.000 0.00 0.00 0.00 2.59
171 172 7.064229 AGGAGTAGGATTAGTTCTTGGAGTAG 58.936 42.308 0.00 0.00 0.00 2.57
172 173 6.265876 GGAGTAGGATTAGTTCTTGGAGTAGG 59.734 46.154 0.00 0.00 0.00 3.18
173 174 6.982899 AGTAGGATTAGTTCTTGGAGTAGGA 58.017 40.000 0.00 0.00 0.00 2.94
174 175 6.834969 AGTAGGATTAGTTCTTGGAGTAGGAC 59.165 42.308 0.00 0.00 0.00 3.85
175 176 5.844601 AGGATTAGTTCTTGGAGTAGGACT 58.155 41.667 0.00 0.00 37.70 3.85
176 177 6.265304 AGGATTAGTTCTTGGAGTAGGACTT 58.735 40.000 0.00 0.00 35.57 3.01
177 178 6.155393 AGGATTAGTTCTTGGAGTAGGACTTG 59.845 42.308 0.00 0.00 35.57 3.16
178 179 6.070710 GGATTAGTTCTTGGAGTAGGACTTGT 60.071 42.308 0.00 0.00 35.57 3.16
179 180 6.742559 TTAGTTCTTGGAGTAGGACTTGTT 57.257 37.500 0.00 0.00 35.57 2.83
180 181 4.962155 AGTTCTTGGAGTAGGACTTGTTG 58.038 43.478 0.00 0.00 29.32 3.33
181 182 4.409247 AGTTCTTGGAGTAGGACTTGTTGT 59.591 41.667 0.00 0.00 29.32 3.32
182 183 5.104485 AGTTCTTGGAGTAGGACTTGTTGTT 60.104 40.000 0.00 0.00 29.32 2.83
183 184 4.703897 TCTTGGAGTAGGACTTGTTGTTG 58.296 43.478 0.00 0.00 0.00 3.33
184 185 2.846193 TGGAGTAGGACTTGTTGTTGC 58.154 47.619 0.00 0.00 0.00 4.17
185 186 2.438021 TGGAGTAGGACTTGTTGTTGCT 59.562 45.455 0.00 0.00 0.00 3.91
186 187 2.808543 GGAGTAGGACTTGTTGTTGCTG 59.191 50.000 0.00 0.00 0.00 4.41
187 188 2.222027 AGTAGGACTTGTTGTTGCTGC 58.778 47.619 0.00 0.00 0.00 5.25
188 189 2.158755 AGTAGGACTTGTTGTTGCTGCT 60.159 45.455 0.00 0.00 0.00 4.24
189 190 1.027357 AGGACTTGTTGTTGCTGCTG 58.973 50.000 0.00 0.00 0.00 4.41
190 191 0.740737 GGACTTGTTGTTGCTGCTGT 59.259 50.000 0.00 0.00 0.00 4.40
191 192 1.134946 GGACTTGTTGTTGCTGCTGTT 59.865 47.619 0.00 0.00 0.00 3.16
192 193 2.357637 GGACTTGTTGTTGCTGCTGTTA 59.642 45.455 0.00 0.00 0.00 2.41
193 194 3.181491 GGACTTGTTGTTGCTGCTGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
194 195 4.032703 ACTTGTTGTTGCTGCTGTTAAG 57.967 40.909 0.00 1.34 0.00 1.85
195 196 3.443681 ACTTGTTGTTGCTGCTGTTAAGT 59.556 39.130 0.00 1.95 0.00 2.24
196 197 4.082245 ACTTGTTGTTGCTGCTGTTAAGTT 60.082 37.500 0.00 0.00 0.00 2.66
197 198 4.448537 TGTTGTTGCTGCTGTTAAGTTT 57.551 36.364 0.00 0.00 0.00 2.66
198 199 4.420168 TGTTGTTGCTGCTGTTAAGTTTC 58.580 39.130 0.00 0.00 0.00 2.78
199 200 4.082517 TGTTGTTGCTGCTGTTAAGTTTCA 60.083 37.500 0.00 0.00 0.00 2.69
200 201 4.291540 TGTTGCTGCTGTTAAGTTTCAG 57.708 40.909 0.00 4.15 35.12 3.02
201 202 3.694072 TGTTGCTGCTGTTAAGTTTCAGT 59.306 39.130 0.00 0.00 34.57 3.41
202 203 4.157656 TGTTGCTGCTGTTAAGTTTCAGTT 59.842 37.500 0.00 0.00 34.57 3.16
203 204 5.355630 TGTTGCTGCTGTTAAGTTTCAGTTA 59.644 36.000 0.00 0.95 34.57 2.24
204 205 6.127869 TGTTGCTGCTGTTAAGTTTCAGTTAA 60.128 34.615 0.00 0.00 34.57 2.01
205 206 6.633500 TGCTGCTGTTAAGTTTCAGTTAAT 57.367 33.333 0.00 0.00 34.57 1.40
206 207 7.038154 TGCTGCTGTTAAGTTTCAGTTAATT 57.962 32.000 0.00 0.00 34.57 1.40
207 208 8.160521 TGCTGCTGTTAAGTTTCAGTTAATTA 57.839 30.769 0.00 0.00 34.57 1.40
208 209 8.625651 TGCTGCTGTTAAGTTTCAGTTAATTAA 58.374 29.630 0.00 0.00 34.57 1.40
209 210 8.902735 GCTGCTGTTAAGTTTCAGTTAATTAAC 58.097 33.333 18.77 18.77 37.03 2.01
233 234 8.831715 ACTGAAATTTTCTTCTCTCTTCTCTC 57.168 34.615 10.33 0.00 0.00 3.20
234 235 7.877612 ACTGAAATTTTCTTCTCTCTTCTCTCC 59.122 37.037 10.33 0.00 0.00 3.71
235 236 7.739825 TGAAATTTTCTTCTCTCTTCTCTCCA 58.260 34.615 10.33 0.00 0.00 3.86
236 237 8.381636 TGAAATTTTCTTCTCTCTTCTCTCCAT 58.618 33.333 10.33 0.00 0.00 3.41
237 238 8.791327 AAATTTTCTTCTCTCTTCTCTCCATC 57.209 34.615 0.00 0.00 0.00 3.51
238 239 7.738437 ATTTTCTTCTCTCTTCTCTCCATCT 57.262 36.000 0.00 0.00 0.00 2.90
239 240 7.552050 TTTTCTTCTCTCTTCTCTCCATCTT 57.448 36.000 0.00 0.00 0.00 2.40
240 241 6.773976 TTCTTCTCTCTTCTCTCCATCTTC 57.226 41.667 0.00 0.00 0.00 2.87
241 242 6.078456 TCTTCTCTCTTCTCTCCATCTTCT 57.922 41.667 0.00 0.00 0.00 2.85
242 243 6.122277 TCTTCTCTCTTCTCTCCATCTTCTC 58.878 44.000 0.00 0.00 0.00 2.87
243 244 5.715439 TCTCTCTTCTCTCCATCTTCTCT 57.285 43.478 0.00 0.00 0.00 3.10
244 245 6.078456 TCTCTCTTCTCTCCATCTTCTCTT 57.922 41.667 0.00 0.00 0.00 2.85
245 246 6.122277 TCTCTCTTCTCTCCATCTTCTCTTC 58.878 44.000 0.00 0.00 0.00 2.87
246 247 6.069440 TCTCTCTTCTCTCCATCTTCTCTTCT 60.069 42.308 0.00 0.00 0.00 2.85
247 248 6.122277 TCTCTTCTCTCCATCTTCTCTTCTC 58.878 44.000 0.00 0.00 0.00 2.87
248 249 6.069440 TCTCTTCTCTCCATCTTCTCTTCTCT 60.069 42.308 0.00 0.00 0.00 3.10
249 250 6.493166 TCTTCTCTCCATCTTCTCTTCTCTT 58.507 40.000 0.00 0.00 0.00 2.85
250 251 6.953520 TCTTCTCTCCATCTTCTCTTCTCTTT 59.046 38.462 0.00 0.00 0.00 2.52
251 252 6.773976 TCTCTCCATCTTCTCTTCTCTTTC 57.226 41.667 0.00 0.00 0.00 2.62
252 253 6.493166 TCTCTCCATCTTCTCTTCTCTTTCT 58.507 40.000 0.00 0.00 0.00 2.52
253 254 6.603201 TCTCTCCATCTTCTCTTCTCTTTCTC 59.397 42.308 0.00 0.00 0.00 2.87
254 255 6.493166 TCTCCATCTTCTCTTCTCTTTCTCT 58.507 40.000 0.00 0.00 0.00 3.10
255 256 6.953520 TCTCCATCTTCTCTTCTCTTTCTCTT 59.046 38.462 0.00 0.00 0.00 2.85
256 257 7.122650 TCTCCATCTTCTCTTCTCTTTCTCTTC 59.877 40.741 0.00 0.00 0.00 2.87
257 258 6.953520 TCCATCTTCTCTTCTCTTTCTCTTCT 59.046 38.462 0.00 0.00 0.00 2.85
258 259 7.122650 TCCATCTTCTCTTCTCTTTCTCTTCTC 59.877 40.741 0.00 0.00 0.00 2.87
259 260 7.123247 CCATCTTCTCTTCTCTTTCTCTTCTCT 59.877 40.741 0.00 0.00 0.00 3.10
260 261 8.526147 CATCTTCTCTTCTCTTTCTCTTCTCTT 58.474 37.037 0.00 0.00 0.00 2.85
261 262 8.477419 TCTTCTCTTCTCTTTCTCTTCTCTTT 57.523 34.615 0.00 0.00 0.00 2.52
262 263 9.581289 TCTTCTCTTCTCTTTCTCTTCTCTTTA 57.419 33.333 0.00 0.00 0.00 1.85
265 266 9.308000 TCTCTTCTCTTTCTCTTCTCTTTATGT 57.692 33.333 0.00 0.00 0.00 2.29
266 267 9.927668 CTCTTCTCTTTCTCTTCTCTTTATGTT 57.072 33.333 0.00 0.00 0.00 2.71
1044 1146 3.488778 AATCCCTGCTTGAGCTCTATG 57.511 47.619 16.19 6.07 42.66 2.23
1045 1147 0.467384 TCCCTGCTTGAGCTCTATGC 59.533 55.000 16.19 15.84 42.66 3.14
1340 3475 4.156556 TGAAAGCTGCTGACATGTTTATCC 59.843 41.667 1.35 0.00 0.00 2.59
1839 3974 5.749596 TGACAACAACTTGTTACATGGAG 57.250 39.130 6.84 0.00 40.93 3.86
2018 4153 4.390297 GCTTTTCGTAATCTGTCTCAGCTT 59.610 41.667 0.00 0.00 0.00 3.74
2342 4478 1.618343 TCAGAGAACCACTTCGATGCA 59.382 47.619 0.00 0.00 0.00 3.96
2653 5185 1.832719 TTGCCATTGCTGCCATTGCT 61.833 50.000 10.43 0.00 38.71 3.91
2813 5345 0.320421 GCACAAACCTCACCGAGCTA 60.320 55.000 0.00 0.00 0.00 3.32
2964 5496 3.514706 TCTTTTGCAGATCTCTCTCAGCT 59.485 43.478 0.00 0.00 0.00 4.24
4486 7031 1.803998 CGCGATCAAGAGGCTTCATGA 60.804 52.381 6.20 6.20 35.70 3.07
5214 7771 1.973812 GTGGTGAAGGGCCTCAAGC 60.974 63.158 6.46 8.70 42.60 4.01
5611 8234 6.705302 AGAGCTCTTCTGATTTGATGTTGTA 58.295 36.000 11.45 0.00 33.93 2.41
5680 9315 5.647589 CAATTTCAGGAATCAGGTGACATG 58.352 41.667 0.00 0.00 0.00 3.21
5770 9418 4.758251 CATGCGCCTCACCCACGA 62.758 66.667 4.18 0.00 0.00 4.35
5771 9419 3.785859 ATGCGCCTCACCCACGAT 61.786 61.111 4.18 0.00 0.00 3.73
5843 9491 2.484742 GGTGAATAACCCGACACCTT 57.515 50.000 0.00 0.00 46.14 3.50
5844 9492 2.353323 GGTGAATAACCCGACACCTTC 58.647 52.381 0.00 0.00 46.14 3.46
5845 9493 2.027469 GGTGAATAACCCGACACCTTCT 60.027 50.000 0.00 0.00 46.14 2.85
5846 9494 3.259902 GTGAATAACCCGACACCTTCTC 58.740 50.000 0.00 0.00 0.00 2.87
5847 9495 3.056035 GTGAATAACCCGACACCTTCTCT 60.056 47.826 0.00 0.00 0.00 3.10
5914 9562 8.886719 TGATCTTATCTGAGTTTATTGCACTTG 58.113 33.333 0.00 0.00 0.00 3.16
5989 9653 1.049402 GGGGCTCGCTTAACTAGGAT 58.951 55.000 0.00 0.00 0.00 3.24
5990 9654 2.245582 GGGGCTCGCTTAACTAGGATA 58.754 52.381 0.00 0.00 0.00 2.59
5991 9655 2.231721 GGGGCTCGCTTAACTAGGATAG 59.768 54.545 0.00 0.00 46.50 2.08
5992 9656 2.231721 GGGCTCGCTTAACTAGGATAGG 59.768 54.545 0.00 0.00 44.97 2.57
5993 9657 3.155501 GGCTCGCTTAACTAGGATAGGA 58.844 50.000 0.00 0.00 44.97 2.94
6009 9673 4.323409 GGATAGGAGAATCATCTTCCCTGC 60.323 50.000 0.00 0.00 35.54 4.85
6067 9731 0.889186 CTGGTCCGTCAAACCCCTTG 60.889 60.000 0.00 0.00 35.84 3.61
6074 9738 1.621814 CGTCAAACCCCTTGGAGAGTA 59.378 52.381 0.00 0.00 35.56 2.59
6075 9739 2.353803 CGTCAAACCCCTTGGAGAGTAG 60.354 54.545 0.00 0.00 35.56 2.57
6076 9740 2.638363 GTCAAACCCCTTGGAGAGTAGT 59.362 50.000 0.00 0.00 35.56 2.73
6077 9741 3.836562 GTCAAACCCCTTGGAGAGTAGTA 59.163 47.826 0.00 0.00 35.56 1.82
6078 9742 4.081586 GTCAAACCCCTTGGAGAGTAGTAG 60.082 50.000 0.00 0.00 35.56 2.57
6201 9898 2.359975 TGTCGGCTCGAGCTCAGA 60.360 61.111 34.46 26.66 41.70 3.27
6202 9899 2.101380 GTCGGCTCGAGCTCAGAC 59.899 66.667 34.46 31.57 41.70 3.51
6203 9900 2.359975 TCGGCTCGAGCTCAGACA 60.360 61.111 34.46 11.26 41.70 3.41
6204 9901 1.971695 TCGGCTCGAGCTCAGACAA 60.972 57.895 34.46 11.30 41.70 3.18
6205 9902 1.080501 CGGCTCGAGCTCAGACAAA 60.081 57.895 34.46 0.00 41.70 2.83
6206 9903 1.347817 CGGCTCGAGCTCAGACAAAC 61.348 60.000 34.46 15.03 41.70 2.93
6207 9904 0.037790 GGCTCGAGCTCAGACAAACT 60.038 55.000 34.46 0.00 41.70 2.66
6208 9905 1.345410 GCTCGAGCTCAGACAAACTC 58.655 55.000 29.88 0.00 38.21 3.01
6209 9906 1.067915 GCTCGAGCTCAGACAAACTCT 60.068 52.381 29.88 0.00 38.21 3.24
6210 9907 2.862512 CTCGAGCTCAGACAAACTCTC 58.137 52.381 15.40 0.00 0.00 3.20
6211 9908 2.227626 CTCGAGCTCAGACAAACTCTCA 59.772 50.000 15.40 0.00 0.00 3.27
6212 9909 2.227626 TCGAGCTCAGACAAACTCTCAG 59.772 50.000 15.40 0.00 0.00 3.35
6213 9910 2.227626 CGAGCTCAGACAAACTCTCAGA 59.772 50.000 15.40 0.00 0.00 3.27
6214 9911 3.119531 CGAGCTCAGACAAACTCTCAGAT 60.120 47.826 15.40 0.00 0.00 2.90
6215 9912 4.423732 GAGCTCAGACAAACTCTCAGATC 58.576 47.826 9.40 0.00 0.00 2.75
6216 9913 3.195396 AGCTCAGACAAACTCTCAGATCC 59.805 47.826 0.00 0.00 0.00 3.36
6217 9914 3.056250 GCTCAGACAAACTCTCAGATCCA 60.056 47.826 0.00 0.00 0.00 3.41
6218 9915 4.746729 CTCAGACAAACTCTCAGATCCAG 58.253 47.826 0.00 0.00 0.00 3.86
6219 9916 4.155709 TCAGACAAACTCTCAGATCCAGT 58.844 43.478 0.00 0.00 0.00 4.00
6220 9917 4.590647 TCAGACAAACTCTCAGATCCAGTT 59.409 41.667 0.00 0.00 31.48 3.16
6221 9918 4.928615 CAGACAAACTCTCAGATCCAGTTC 59.071 45.833 0.00 0.00 29.85 3.01
6222 9919 4.590647 AGACAAACTCTCAGATCCAGTTCA 59.409 41.667 0.00 0.00 29.85 3.18
6223 9920 5.070981 AGACAAACTCTCAGATCCAGTTCAA 59.929 40.000 0.00 0.00 29.85 2.69
6224 9921 5.874093 ACAAACTCTCAGATCCAGTTCAAT 58.126 37.500 0.00 0.00 29.85 2.57
6225 9922 6.302269 ACAAACTCTCAGATCCAGTTCAATT 58.698 36.000 0.00 0.00 29.85 2.32
6226 9923 6.774656 ACAAACTCTCAGATCCAGTTCAATTT 59.225 34.615 0.00 0.00 29.85 1.82
6227 9924 7.286316 ACAAACTCTCAGATCCAGTTCAATTTT 59.714 33.333 0.00 0.00 29.85 1.82
6228 9925 6.814506 ACTCTCAGATCCAGTTCAATTTTG 57.185 37.500 0.00 0.00 0.00 2.44
6229 9926 6.302269 ACTCTCAGATCCAGTTCAATTTTGT 58.698 36.000 0.00 0.00 0.00 2.83
6230 9927 6.429385 ACTCTCAGATCCAGTTCAATTTTGTC 59.571 38.462 0.00 0.00 0.00 3.18
6231 9928 6.298361 TCTCAGATCCAGTTCAATTTTGTCA 58.702 36.000 0.00 0.00 0.00 3.58
6232 9929 6.772233 TCTCAGATCCAGTTCAATTTTGTCAA 59.228 34.615 0.00 0.00 0.00 3.18
6233 9930 7.449395 TCTCAGATCCAGTTCAATTTTGTCAAT 59.551 33.333 0.00 0.00 0.00 2.57
6234 9931 7.954835 TCAGATCCAGTTCAATTTTGTCAATT 58.045 30.769 0.00 0.00 0.00 2.32
6235 9932 8.423349 TCAGATCCAGTTCAATTTTGTCAATTT 58.577 29.630 0.00 0.00 0.00 1.82
6236 9933 8.706035 CAGATCCAGTTCAATTTTGTCAATTTC 58.294 33.333 0.00 0.00 0.00 2.17
6237 9934 8.645110 AGATCCAGTTCAATTTTGTCAATTTCT 58.355 29.630 0.00 0.00 0.00 2.52
6238 9935 8.597662 ATCCAGTTCAATTTTGTCAATTTCTG 57.402 30.769 0.00 0.00 0.00 3.02
6239 9936 7.780064 TCCAGTTCAATTTTGTCAATTTCTGA 58.220 30.769 0.00 0.00 0.00 3.27
6240 9937 8.256605 TCCAGTTCAATTTTGTCAATTTCTGAA 58.743 29.630 0.00 0.00 35.22 3.02
6241 9938 8.545420 CCAGTTCAATTTTGTCAATTTCTGAAG 58.455 33.333 0.00 0.00 35.22 3.02
6242 9939 8.545420 CAGTTCAATTTTGTCAATTTCTGAAGG 58.455 33.333 0.00 0.00 35.22 3.46
6243 9940 8.260114 AGTTCAATTTTGTCAATTTCTGAAGGT 58.740 29.630 0.00 0.00 35.22 3.50
6244 9941 8.882736 GTTCAATTTTGTCAATTTCTGAAGGTT 58.117 29.630 0.00 0.00 35.22 3.50
6248 9945 9.883142 AATTTTGTCAATTTCTGAAGGTTAACA 57.117 25.926 8.10 0.00 35.22 2.41
6250 9947 8.870160 TTTGTCAATTTCTGAAGGTTAACATG 57.130 30.769 8.10 0.00 35.22 3.21
6251 9948 7.815840 TGTCAATTTCTGAAGGTTAACATGA 57.184 32.000 8.10 0.00 35.22 3.07
6252 9949 8.408043 TGTCAATTTCTGAAGGTTAACATGAT 57.592 30.769 8.10 0.00 35.22 2.45
6253 9950 9.513906 TGTCAATTTCTGAAGGTTAACATGATA 57.486 29.630 8.10 0.00 35.22 2.15
6258 9955 9.685276 ATTTCTGAAGGTTAACATGATATCACA 57.315 29.630 7.78 0.00 0.00 3.58
6259 9956 9.513906 TTTCTGAAGGTTAACATGATATCACAA 57.486 29.630 7.78 0.00 0.00 3.33
6260 9957 9.513906 TTCTGAAGGTTAACATGATATCACAAA 57.486 29.630 7.78 0.00 0.00 2.83
6261 9958 8.946085 TCTGAAGGTTAACATGATATCACAAAC 58.054 33.333 7.78 9.61 0.00 2.93
6262 9959 8.050778 TGAAGGTTAACATGATATCACAAACC 57.949 34.615 21.54 21.54 36.27 3.27
6263 9960 7.122055 TGAAGGTTAACATGATATCACAAACCC 59.878 37.037 23.53 14.45 36.60 4.11
6264 9961 6.489603 AGGTTAACATGATATCACAAACCCA 58.510 36.000 23.53 0.00 36.60 4.51
6265 9962 6.603201 AGGTTAACATGATATCACAAACCCAG 59.397 38.462 23.53 7.32 36.60 4.45
6266 9963 4.989279 AACATGATATCACAAACCCAGC 57.011 40.909 7.78 0.00 0.00 4.85
6267 9964 3.966979 ACATGATATCACAAACCCAGCA 58.033 40.909 7.78 0.00 0.00 4.41
6268 9965 3.949754 ACATGATATCACAAACCCAGCAG 59.050 43.478 7.78 0.00 0.00 4.24
6269 9966 2.368439 TGATATCACAAACCCAGCAGC 58.632 47.619 0.00 0.00 0.00 5.25
6270 9967 2.025981 TGATATCACAAACCCAGCAGCT 60.026 45.455 0.00 0.00 0.00 4.24
6271 9968 3.199727 TGATATCACAAACCCAGCAGCTA 59.800 43.478 0.00 0.00 0.00 3.32
6272 9969 2.119801 ATCACAAACCCAGCAGCTAG 57.880 50.000 0.00 0.00 0.00 3.42
6273 9970 0.606401 TCACAAACCCAGCAGCTAGC 60.606 55.000 6.62 6.62 46.19 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.745837 CAAAACAGTACTGCACTTCATTTTAAG 58.254 33.333 22.90 5.85 34.26 1.85
1 2 7.704472 CCAAAACAGTACTGCACTTCATTTTAA 59.296 33.333 22.90 0.00 34.26 1.52
2 3 7.147983 ACCAAAACAGTACTGCACTTCATTTTA 60.148 33.333 22.90 0.00 34.26 1.52
3 4 6.042143 CCAAAACAGTACTGCACTTCATTTT 58.958 36.000 22.90 15.67 34.26 1.82
4 5 5.127031 ACCAAAACAGTACTGCACTTCATTT 59.873 36.000 22.90 10.72 34.26 2.32
5 6 4.644685 ACCAAAACAGTACTGCACTTCATT 59.355 37.500 22.90 4.82 34.26 2.57
6 7 4.207165 ACCAAAACAGTACTGCACTTCAT 58.793 39.130 22.90 0.00 34.26 2.57
7 8 3.616219 ACCAAAACAGTACTGCACTTCA 58.384 40.909 22.90 0.00 34.26 3.02
8 9 4.351192 CAACCAAAACAGTACTGCACTTC 58.649 43.478 22.90 0.00 34.26 3.01
9 10 3.428862 GCAACCAAAACAGTACTGCACTT 60.429 43.478 22.90 10.81 34.26 3.16
10 11 2.099098 GCAACCAAAACAGTACTGCACT 59.901 45.455 22.90 4.84 38.32 4.40
11 12 2.159310 TGCAACCAAAACAGTACTGCAC 60.159 45.455 22.90 2.77 33.65 4.57
12 13 2.095461 TGCAACCAAAACAGTACTGCA 58.905 42.857 22.90 9.56 36.06 4.41
13 14 2.099098 ACTGCAACCAAAACAGTACTGC 59.901 45.455 22.90 6.89 42.65 4.40
14 15 4.574828 ACTACTGCAACCAAAACAGTACTG 59.425 41.667 21.44 21.44 42.65 2.74
15 16 4.777463 ACTACTGCAACCAAAACAGTACT 58.223 39.130 0.00 0.00 42.65 2.73
16 17 5.494632 AACTACTGCAACCAAAACAGTAC 57.505 39.130 0.00 0.00 42.65 2.73
17 18 6.518208 AAAACTACTGCAACCAAAACAGTA 57.482 33.333 0.00 0.00 42.65 2.74
18 19 5.400066 AAAACTACTGCAACCAAAACAGT 57.600 34.783 0.00 0.00 46.05 3.55
19 20 5.866633 TGAAAAACTACTGCAACCAAAACAG 59.133 36.000 0.00 0.00 37.45 3.16
20 21 5.784177 TGAAAAACTACTGCAACCAAAACA 58.216 33.333 0.00 0.00 0.00 2.83
21 22 5.867174 ACTGAAAAACTACTGCAACCAAAAC 59.133 36.000 0.00 0.00 0.00 2.43
22 23 6.031751 ACTGAAAAACTACTGCAACCAAAA 57.968 33.333 0.00 0.00 0.00 2.44
23 24 5.652994 ACTGAAAAACTACTGCAACCAAA 57.347 34.783 0.00 0.00 0.00 3.28
24 25 5.220970 GCTACTGAAAAACTACTGCAACCAA 60.221 40.000 0.00 0.00 0.00 3.67
25 26 4.274950 GCTACTGAAAAACTACTGCAACCA 59.725 41.667 0.00 0.00 0.00 3.67
26 27 4.515567 AGCTACTGAAAAACTACTGCAACC 59.484 41.667 0.00 0.00 0.00 3.77
27 28 5.674933 AGCTACTGAAAAACTACTGCAAC 57.325 39.130 0.00 0.00 0.00 4.17
28 29 7.795482 TTAAGCTACTGAAAAACTACTGCAA 57.205 32.000 0.00 0.00 0.00 4.08
29 30 7.795482 TTTAAGCTACTGAAAAACTACTGCA 57.205 32.000 0.00 0.00 0.00 4.41
30 31 9.678941 AAATTTAAGCTACTGAAAAACTACTGC 57.321 29.630 0.00 0.00 0.00 4.40
46 47 8.914011 AGGAAGTTAACAAGACAAATTTAAGCT 58.086 29.630 8.61 0.00 0.00 3.74
47 48 8.968242 CAGGAAGTTAACAAGACAAATTTAAGC 58.032 33.333 8.61 0.00 0.00 3.09
51 52 7.653311 GCATCAGGAAGTTAACAAGACAAATTT 59.347 33.333 8.61 0.00 0.00 1.82
52 53 7.014615 AGCATCAGGAAGTTAACAAGACAAATT 59.985 33.333 8.61 0.00 0.00 1.82
53 54 6.491403 AGCATCAGGAAGTTAACAAGACAAAT 59.509 34.615 8.61 0.00 0.00 2.32
54 55 5.827797 AGCATCAGGAAGTTAACAAGACAAA 59.172 36.000 8.61 0.00 0.00 2.83
55 56 5.376625 AGCATCAGGAAGTTAACAAGACAA 58.623 37.500 8.61 0.00 0.00 3.18
56 57 4.973168 AGCATCAGGAAGTTAACAAGACA 58.027 39.130 8.61 0.00 0.00 3.41
57 58 5.948992 AAGCATCAGGAAGTTAACAAGAC 57.051 39.130 8.61 0.00 0.00 3.01
58 59 6.061441 TGAAAGCATCAGGAAGTTAACAAGA 58.939 36.000 8.61 0.00 33.04 3.02
59 60 6.317789 TGAAAGCATCAGGAAGTTAACAAG 57.682 37.500 8.61 0.00 33.04 3.16
60 61 6.899393 ATGAAAGCATCAGGAAGTTAACAA 57.101 33.333 8.61 0.00 42.53 2.83
61 62 7.994425 TTATGAAAGCATCAGGAAGTTAACA 57.006 32.000 8.61 0.00 42.53 2.41
62 63 9.508567 GAATTATGAAAGCATCAGGAAGTTAAC 57.491 33.333 0.00 0.00 42.53 2.01
63 64 9.466497 AGAATTATGAAAGCATCAGGAAGTTAA 57.534 29.630 0.00 0.00 42.53 2.01
64 65 8.896744 CAGAATTATGAAAGCATCAGGAAGTTA 58.103 33.333 0.00 0.00 42.53 2.24
65 66 7.395489 ACAGAATTATGAAAGCATCAGGAAGTT 59.605 33.333 7.16 0.00 42.53 2.66
66 67 6.888632 ACAGAATTATGAAAGCATCAGGAAGT 59.111 34.615 7.16 0.00 42.53 3.01
67 68 7.330900 ACAGAATTATGAAAGCATCAGGAAG 57.669 36.000 7.16 0.00 42.53 3.46
68 69 7.707624 AACAGAATTATGAAAGCATCAGGAA 57.292 32.000 7.16 0.00 42.53 3.36
69 70 8.806429 TTAACAGAATTATGAAAGCATCAGGA 57.194 30.769 7.16 0.00 42.53 3.86
75 76 9.844790 CACAGAATTAACAGAATTATGAAAGCA 57.155 29.630 7.16 0.00 34.15 3.91
76 77 8.801913 GCACAGAATTAACAGAATTATGAAAGC 58.198 33.333 7.16 8.03 34.15 3.51
77 78 9.844790 TGCACAGAATTAACAGAATTATGAAAG 57.155 29.630 7.16 3.29 34.15 2.62
78 79 9.844790 CTGCACAGAATTAACAGAATTATGAAA 57.155 29.630 7.16 1.29 34.15 2.69
79 80 7.970061 GCTGCACAGAATTAACAGAATTATGAA 59.030 33.333 7.16 0.00 34.15 2.57
80 81 7.337689 AGCTGCACAGAATTAACAGAATTATGA 59.662 33.333 7.16 0.00 34.15 2.15
81 82 7.478322 AGCTGCACAGAATTAACAGAATTATG 58.522 34.615 1.02 0.00 35.60 1.90
82 83 7.636150 AGCTGCACAGAATTAACAGAATTAT 57.364 32.000 1.02 0.00 0.00 1.28
83 84 8.737168 ATAGCTGCACAGAATTAACAGAATTA 57.263 30.769 1.02 0.00 0.00 1.40
84 85 5.972107 AGCTGCACAGAATTAACAGAATT 57.028 34.783 1.02 0.00 0.00 2.17
85 86 7.636150 AATAGCTGCACAGAATTAACAGAAT 57.364 32.000 1.02 0.00 0.00 2.40
86 87 7.452880 AAATAGCTGCACAGAATTAACAGAA 57.547 32.000 1.02 0.00 0.00 3.02
87 88 7.452880 AAAATAGCTGCACAGAATTAACAGA 57.547 32.000 1.02 0.00 0.00 3.41
88 89 8.454106 ACTAAAATAGCTGCACAGAATTAACAG 58.546 33.333 1.02 0.00 0.00 3.16
89 90 8.236586 CACTAAAATAGCTGCACAGAATTAACA 58.763 33.333 1.02 0.00 0.00 2.41
90 91 8.237267 ACACTAAAATAGCTGCACAGAATTAAC 58.763 33.333 1.02 0.00 0.00 2.01
91 92 8.335532 ACACTAAAATAGCTGCACAGAATTAA 57.664 30.769 1.02 0.00 0.00 1.40
92 93 7.921786 ACACTAAAATAGCTGCACAGAATTA 57.078 32.000 1.02 0.00 0.00 1.40
93 94 6.824305 ACACTAAAATAGCTGCACAGAATT 57.176 33.333 1.02 0.00 0.00 2.17
94 95 6.656693 AGAACACTAAAATAGCTGCACAGAAT 59.343 34.615 1.02 0.00 0.00 2.40
95 96 5.997746 AGAACACTAAAATAGCTGCACAGAA 59.002 36.000 1.02 0.00 0.00 3.02
96 97 5.551233 AGAACACTAAAATAGCTGCACAGA 58.449 37.500 1.02 0.00 0.00 3.41
97 98 5.869753 AGAACACTAAAATAGCTGCACAG 57.130 39.130 1.02 0.00 0.00 3.66
98 99 5.997746 AGAAGAACACTAAAATAGCTGCACA 59.002 36.000 1.02 0.00 0.00 4.57
99 100 6.370166 AGAGAAGAACACTAAAATAGCTGCAC 59.630 38.462 1.02 0.00 0.00 4.57
100 101 6.467677 AGAGAAGAACACTAAAATAGCTGCA 58.532 36.000 1.02 0.00 0.00 4.41
101 102 6.976636 AGAGAAGAACACTAAAATAGCTGC 57.023 37.500 0.00 0.00 0.00 5.25
102 103 8.770438 AGAAGAGAAGAACACTAAAATAGCTG 57.230 34.615 0.00 0.00 0.00 4.24
103 104 8.811994 AGAGAAGAGAAGAACACTAAAATAGCT 58.188 33.333 0.00 0.00 0.00 3.32
104 105 8.996024 AGAGAAGAGAAGAACACTAAAATAGC 57.004 34.615 0.00 0.00 0.00 2.97
107 108 9.487790 CTGAAGAGAAGAGAAGAACACTAAAAT 57.512 33.333 0.00 0.00 0.00 1.82
108 109 8.478877 ACTGAAGAGAAGAGAAGAACACTAAAA 58.521 33.333 0.00 0.00 0.00 1.52
109 110 8.012957 ACTGAAGAGAAGAGAAGAACACTAAA 57.987 34.615 0.00 0.00 0.00 1.85
110 111 7.589958 ACTGAAGAGAAGAGAAGAACACTAA 57.410 36.000 0.00 0.00 0.00 2.24
111 112 8.693120 TTACTGAAGAGAAGAGAAGAACACTA 57.307 34.615 0.00 0.00 0.00 2.74
112 113 7.589958 TTACTGAAGAGAAGAGAAGAACACT 57.410 36.000 0.00 0.00 0.00 3.55
113 114 8.825667 ATTTACTGAAGAGAAGAGAAGAACAC 57.174 34.615 0.00 0.00 0.00 3.32
140 141 9.907229 CCAAGAACTAATCCTACTCCTAAATTT 57.093 33.333 0.00 0.00 0.00 1.82
141 142 9.280456 TCCAAGAACTAATCCTACTCCTAAATT 57.720 33.333 0.00 0.00 0.00 1.82
142 143 8.855804 TCCAAGAACTAATCCTACTCCTAAAT 57.144 34.615 0.00 0.00 0.00 1.40
143 144 7.899709 ACTCCAAGAACTAATCCTACTCCTAAA 59.100 37.037 0.00 0.00 0.00 1.85
144 145 7.420029 ACTCCAAGAACTAATCCTACTCCTAA 58.580 38.462 0.00 0.00 0.00 2.69
145 146 6.982899 ACTCCAAGAACTAATCCTACTCCTA 58.017 40.000 0.00 0.00 0.00 2.94
146 147 5.844601 ACTCCAAGAACTAATCCTACTCCT 58.155 41.667 0.00 0.00 0.00 3.69
147 148 6.265876 CCTACTCCAAGAACTAATCCTACTCC 59.734 46.154 0.00 0.00 0.00 3.85
148 149 7.013559 GTCCTACTCCAAGAACTAATCCTACTC 59.986 44.444 0.00 0.00 0.00 2.59
149 150 6.834969 GTCCTACTCCAAGAACTAATCCTACT 59.165 42.308 0.00 0.00 0.00 2.57
150 151 6.834969 AGTCCTACTCCAAGAACTAATCCTAC 59.165 42.308 0.00 0.00 0.00 3.18
151 152 6.982899 AGTCCTACTCCAAGAACTAATCCTA 58.017 40.000 0.00 0.00 0.00 2.94
152 153 5.844601 AGTCCTACTCCAAGAACTAATCCT 58.155 41.667 0.00 0.00 0.00 3.24
153 154 6.070710 ACAAGTCCTACTCCAAGAACTAATCC 60.071 42.308 0.00 0.00 0.00 3.01
154 155 6.937392 ACAAGTCCTACTCCAAGAACTAATC 58.063 40.000 0.00 0.00 0.00 1.75
155 156 6.936968 ACAAGTCCTACTCCAAGAACTAAT 57.063 37.500 0.00 0.00 0.00 1.73
156 157 6.099269 ACAACAAGTCCTACTCCAAGAACTAA 59.901 38.462 0.00 0.00 0.00 2.24
157 158 5.601313 ACAACAAGTCCTACTCCAAGAACTA 59.399 40.000 0.00 0.00 0.00 2.24
158 159 4.409247 ACAACAAGTCCTACTCCAAGAACT 59.591 41.667 0.00 0.00 0.00 3.01
159 160 4.704965 ACAACAAGTCCTACTCCAAGAAC 58.295 43.478 0.00 0.00 0.00 3.01
160 161 5.123227 CAACAACAAGTCCTACTCCAAGAA 58.877 41.667 0.00 0.00 0.00 2.52
161 162 4.703897 CAACAACAAGTCCTACTCCAAGA 58.296 43.478 0.00 0.00 0.00 3.02
162 163 3.251004 GCAACAACAAGTCCTACTCCAAG 59.749 47.826 0.00 0.00 0.00 3.61
163 164 3.118038 AGCAACAACAAGTCCTACTCCAA 60.118 43.478 0.00 0.00 0.00 3.53
164 165 2.438021 AGCAACAACAAGTCCTACTCCA 59.562 45.455 0.00 0.00 0.00 3.86
165 166 2.808543 CAGCAACAACAAGTCCTACTCC 59.191 50.000 0.00 0.00 0.00 3.85
166 167 2.224314 GCAGCAACAACAAGTCCTACTC 59.776 50.000 0.00 0.00 0.00 2.59
167 168 2.158755 AGCAGCAACAACAAGTCCTACT 60.159 45.455 0.00 0.00 0.00 2.57
168 169 2.031682 CAGCAGCAACAACAAGTCCTAC 60.032 50.000 0.00 0.00 0.00 3.18
169 170 2.221169 CAGCAGCAACAACAAGTCCTA 58.779 47.619 0.00 0.00 0.00 2.94
170 171 1.027357 CAGCAGCAACAACAAGTCCT 58.973 50.000 0.00 0.00 0.00 3.85
171 172 0.740737 ACAGCAGCAACAACAAGTCC 59.259 50.000 0.00 0.00 0.00 3.85
172 173 2.566952 AACAGCAGCAACAACAAGTC 57.433 45.000 0.00 0.00 0.00 3.01
173 174 3.443681 ACTTAACAGCAGCAACAACAAGT 59.556 39.130 0.00 0.00 0.00 3.16
174 175 4.032703 ACTTAACAGCAGCAACAACAAG 57.967 40.909 0.00 0.00 0.00 3.16
175 176 4.448537 AACTTAACAGCAGCAACAACAA 57.551 36.364 0.00 0.00 0.00 2.83
176 177 4.082517 TGAAACTTAACAGCAGCAACAACA 60.083 37.500 0.00 0.00 0.00 3.33
177 178 4.420168 TGAAACTTAACAGCAGCAACAAC 58.580 39.130 0.00 0.00 0.00 3.32
178 179 4.157656 ACTGAAACTTAACAGCAGCAACAA 59.842 37.500 0.00 0.00 37.61 2.83
179 180 3.694072 ACTGAAACTTAACAGCAGCAACA 59.306 39.130 0.00 0.00 37.61 3.33
180 181 4.292977 ACTGAAACTTAACAGCAGCAAC 57.707 40.909 0.00 0.00 37.61 4.17
181 182 4.981806 AACTGAAACTTAACAGCAGCAA 57.018 36.364 0.00 0.00 37.61 3.91
182 183 6.633500 ATTAACTGAAACTTAACAGCAGCA 57.367 33.333 0.00 0.00 37.61 4.41
183 184 8.902735 GTTAATTAACTGAAACTTAACAGCAGC 58.097 33.333 19.07 0.00 37.61 5.25
207 208 9.271828 GAGAGAAGAGAGAAGAAAATTTCAGTT 57.728 33.333 8.55 0.00 0.00 3.16
208 209 7.877612 GGAGAGAAGAGAGAAGAAAATTTCAGT 59.122 37.037 8.55 0.00 0.00 3.41
209 210 7.877097 TGGAGAGAAGAGAGAAGAAAATTTCAG 59.123 37.037 8.55 0.00 0.00 3.02
210 211 7.739825 TGGAGAGAAGAGAGAAGAAAATTTCA 58.260 34.615 8.55 0.00 0.00 2.69
211 212 8.791327 ATGGAGAGAAGAGAGAAGAAAATTTC 57.209 34.615 0.00 0.00 0.00 2.17
212 213 8.605065 AGATGGAGAGAAGAGAGAAGAAAATTT 58.395 33.333 0.00 0.00 0.00 1.82
213 214 8.149631 AGATGGAGAGAAGAGAGAAGAAAATT 57.850 34.615 0.00 0.00 0.00 1.82
214 215 7.738437 AGATGGAGAGAAGAGAGAAGAAAAT 57.262 36.000 0.00 0.00 0.00 1.82
215 216 7.454380 AGAAGATGGAGAGAAGAGAGAAGAAAA 59.546 37.037 0.00 0.00 0.00 2.29
216 217 6.953520 AGAAGATGGAGAGAAGAGAGAAGAAA 59.046 38.462 0.00 0.00 0.00 2.52
217 218 6.493166 AGAAGATGGAGAGAAGAGAGAAGAA 58.507 40.000 0.00 0.00 0.00 2.52
218 219 6.069440 AGAGAAGATGGAGAGAAGAGAGAAGA 60.069 42.308 0.00 0.00 0.00 2.87
219 220 6.125029 AGAGAAGATGGAGAGAAGAGAGAAG 58.875 44.000 0.00 0.00 0.00 2.85
220 221 6.078456 AGAGAAGATGGAGAGAAGAGAGAA 57.922 41.667 0.00 0.00 0.00 2.87
221 222 5.715439 AGAGAAGATGGAGAGAAGAGAGA 57.285 43.478 0.00 0.00 0.00 3.10
222 223 6.125029 AGAAGAGAAGATGGAGAGAAGAGAG 58.875 44.000 0.00 0.00 0.00 3.20
223 224 6.069440 AGAGAAGAGAAGATGGAGAGAAGAGA 60.069 42.308 0.00 0.00 0.00 3.10
224 225 6.125029 AGAGAAGAGAAGATGGAGAGAAGAG 58.875 44.000 0.00 0.00 0.00 2.85
225 226 6.078456 AGAGAAGAGAAGATGGAGAGAAGA 57.922 41.667 0.00 0.00 0.00 2.87
226 227 6.780457 AAGAGAAGAGAAGATGGAGAGAAG 57.220 41.667 0.00 0.00 0.00 2.85
227 228 6.953520 AGAAAGAGAAGAGAAGATGGAGAGAA 59.046 38.462 0.00 0.00 0.00 2.87
228 229 6.493166 AGAAAGAGAAGAGAAGATGGAGAGA 58.507 40.000 0.00 0.00 0.00 3.10
229 230 6.604795 AGAGAAAGAGAAGAGAAGATGGAGAG 59.395 42.308 0.00 0.00 0.00 3.20
230 231 6.493166 AGAGAAAGAGAAGAGAAGATGGAGA 58.507 40.000 0.00 0.00 0.00 3.71
231 232 6.780457 AGAGAAAGAGAAGAGAAGATGGAG 57.220 41.667 0.00 0.00 0.00 3.86
232 233 6.953520 AGAAGAGAAAGAGAAGAGAAGATGGA 59.046 38.462 0.00 0.00 0.00 3.41
233 234 7.123247 AGAGAAGAGAAAGAGAAGAGAAGATGG 59.877 40.741 0.00 0.00 0.00 3.51
234 235 8.059798 AGAGAAGAGAAAGAGAAGAGAAGATG 57.940 38.462 0.00 0.00 0.00 2.90
235 236 8.655935 AAGAGAAGAGAAAGAGAAGAGAAGAT 57.344 34.615 0.00 0.00 0.00 2.40
236 237 8.477419 AAAGAGAAGAGAAAGAGAAGAGAAGA 57.523 34.615 0.00 0.00 0.00 2.87
239 240 9.308000 ACATAAAGAGAAGAGAAAGAGAAGAGA 57.692 33.333 0.00 0.00 0.00 3.10
240 241 9.927668 AACATAAAGAGAAGAGAAAGAGAAGAG 57.072 33.333 0.00 0.00 0.00 2.85
252 253 9.593134 GCAAGAAGAGATAACATAAAGAGAAGA 57.407 33.333 0.00 0.00 0.00 2.87
253 254 9.598517 AGCAAGAAGAGATAACATAAAGAGAAG 57.401 33.333 0.00 0.00 0.00 2.85
257 258 9.809096 CACTAGCAAGAAGAGATAACATAAAGA 57.191 33.333 0.00 0.00 0.00 2.52
258 259 9.593134 ACACTAGCAAGAAGAGATAACATAAAG 57.407 33.333 0.00 0.00 0.00 1.85
259 260 9.944376 AACACTAGCAAGAAGAGATAACATAAA 57.056 29.630 0.00 0.00 0.00 1.40
260 261 9.944376 AAACACTAGCAAGAAGAGATAACATAA 57.056 29.630 0.00 0.00 0.00 1.90
262 263 9.372369 GTAAACACTAGCAAGAAGAGATAACAT 57.628 33.333 0.00 0.00 0.00 2.71
263 264 8.585881 AGTAAACACTAGCAAGAAGAGATAACA 58.414 33.333 0.00 0.00 0.00 2.41
264 265 8.989653 AGTAAACACTAGCAAGAAGAGATAAC 57.010 34.615 0.00 0.00 0.00 1.89
265 266 8.251721 GGAGTAAACACTAGCAAGAAGAGATAA 58.748 37.037 0.00 0.00 0.00 1.75
266 267 7.616150 AGGAGTAAACACTAGCAAGAAGAGATA 59.384 37.037 0.00 0.00 0.00 1.98
267 268 6.439058 AGGAGTAAACACTAGCAAGAAGAGAT 59.561 38.462 0.00 0.00 0.00 2.75
268 269 5.775701 AGGAGTAAACACTAGCAAGAAGAGA 59.224 40.000 0.00 0.00 0.00 3.10
269 270 6.031751 AGGAGTAAACACTAGCAAGAAGAG 57.968 41.667 0.00 0.00 0.00 2.85
270 271 7.396339 TCATAGGAGTAAACACTAGCAAGAAGA 59.604 37.037 0.00 0.00 0.00 2.87
271 272 7.548097 TCATAGGAGTAAACACTAGCAAGAAG 58.452 38.462 0.00 0.00 0.00 2.85
272 273 7.476540 TCATAGGAGTAAACACTAGCAAGAA 57.523 36.000 0.00 0.00 0.00 2.52
273 274 7.476540 TTCATAGGAGTAAACACTAGCAAGA 57.523 36.000 0.00 0.00 0.00 3.02
274 275 8.723942 ATTTCATAGGAGTAAACACTAGCAAG 57.276 34.615 0.00 0.00 0.00 4.01
419 420 9.778741 TCATGATTAAGTACTCAAGAAAACAGT 57.221 29.630 0.00 0.00 0.00 3.55
747 798 3.126001 TCTCGCCACAGACAGAAATTT 57.874 42.857 0.00 0.00 0.00 1.82
1000 1102 7.482169 TTACACTGACTACCTTCTCAATCAT 57.518 36.000 0.00 0.00 0.00 2.45
1002 1104 7.492994 GGATTTACACTGACTACCTTCTCAATC 59.507 40.741 0.00 0.00 0.00 2.67
1003 1105 7.331791 GGATTTACACTGACTACCTTCTCAAT 58.668 38.462 0.00 0.00 0.00 2.57
1044 1146 5.280945 TGAGCAATCAAAAGTTGTACAAGC 58.719 37.500 8.98 5.57 0.00 4.01
1045 1147 7.935338 AATGAGCAATCAAAAGTTGTACAAG 57.065 32.000 8.98 0.00 0.00 3.16
1049 1151 9.624697 GATGTAAATGAGCAATCAAAAGTTGTA 57.375 29.630 0.00 0.00 0.00 2.41
1095 1197 6.757897 TGGCTTGTTCATTATAGAACTTGG 57.242 37.500 8.13 0.95 46.19 3.61
1340 3475 5.124297 TGTGTGATGTTCAATCTGCATAAGG 59.876 40.000 0.00 0.00 0.00 2.69
1839 3974 0.529378 CCAATTGCAGGGCTCAGTTC 59.471 55.000 0.00 0.00 0.00 3.01
2018 4153 4.847198 TCTGGCTTAGATCAAGATGCAAA 58.153 39.130 0.00 0.00 36.22 3.68
2342 4478 2.305927 ACCGATTGATGTTGGGAGTTCT 59.694 45.455 0.00 0.00 0.00 3.01
2709 5241 2.508526 GGAGTTGCCTTGACACATCTT 58.491 47.619 0.00 0.00 0.00 2.40
2813 5345 5.876357 TGAAGATGGTTACCTAGCAAGTTT 58.124 37.500 2.07 0.00 37.87 2.66
2863 5395 2.236395 TCCAGACTAACTAAAGGCAGCC 59.764 50.000 1.84 1.84 0.00 4.85
2964 5496 5.128827 GGATCTGGCCGGTAATCTGATTATA 59.871 44.000 12.43 0.00 0.00 0.98
3271 5803 4.383444 CCACACAGATCTCAGCAGGAATAA 60.383 45.833 0.00 0.00 0.00 1.40
4378 6923 6.531240 GTGTTCTTTGCTGAAATTCTTTGTGA 59.469 34.615 0.00 0.00 0.00 3.58
4486 7031 1.217057 ACCCTGGAACTGATGGCCAT 61.217 55.000 20.96 20.96 0.00 4.40
4965 7519 1.211212 TGTAAGCAGCTCCAGCATGAT 59.789 47.619 0.00 0.00 45.16 2.45
5109 7666 2.191375 CATCTGCTCCCGCCACAT 59.809 61.111 0.00 0.00 34.43 3.21
5214 7771 2.362369 ACTCCATCGCCTGGGTCAG 61.362 63.158 0.00 0.00 45.98 3.51
5277 7834 1.805945 GAACAGTGCTACGAGGCCG 60.806 63.158 0.00 0.00 42.50 6.13
5311 7876 6.100004 CCTACCATCAGCCTACATTATTACG 58.900 44.000 0.00 0.00 0.00 3.18
5567 8190 6.613271 AGCTCTGGATCTGGTAAAAGAGATTA 59.387 38.462 1.80 0.00 34.40 1.75
5568 8191 5.428131 AGCTCTGGATCTGGTAAAAGAGATT 59.572 40.000 1.80 0.00 34.40 2.40
5680 9315 4.510038 ACTGATTCCTGAAATTGCACAC 57.490 40.909 0.00 0.00 0.00 3.82
5768 9416 2.331805 CCCACCGTAGCTCGATCG 59.668 66.667 9.36 9.36 42.86 3.69
5769 9417 1.102222 AGACCCACCGTAGCTCGATC 61.102 60.000 7.07 0.00 42.86 3.69
5770 9418 1.076923 AGACCCACCGTAGCTCGAT 60.077 57.895 7.07 0.00 42.86 3.59
5771 9419 2.044555 CAGACCCACCGTAGCTCGA 61.045 63.158 7.07 0.00 42.86 4.04
5820 9468 2.618053 GTGTCGGGTTATTCACCTCAG 58.382 52.381 0.00 0.00 46.38 3.35
5843 9491 3.326006 AGCACAAATCCAGTGAGAAGAGA 59.674 43.478 0.00 0.00 39.30 3.10
5844 9492 3.436015 CAGCACAAATCCAGTGAGAAGAG 59.564 47.826 0.00 0.00 39.30 2.85
5845 9493 3.405831 CAGCACAAATCCAGTGAGAAGA 58.594 45.455 0.00 0.00 39.30 2.87
5846 9494 2.486982 CCAGCACAAATCCAGTGAGAAG 59.513 50.000 0.00 0.00 39.30 2.85
5847 9495 2.158623 ACCAGCACAAATCCAGTGAGAA 60.159 45.455 0.00 0.00 39.30 2.87
5989 9653 3.645212 CAGCAGGGAAGATGATTCTCCTA 59.355 47.826 0.00 0.00 0.00 2.94
5990 9654 2.438763 CAGCAGGGAAGATGATTCTCCT 59.561 50.000 0.00 0.00 0.00 3.69
5991 9655 2.437281 TCAGCAGGGAAGATGATTCTCC 59.563 50.000 0.00 0.00 0.00 3.71
5992 9656 3.118482 TGTCAGCAGGGAAGATGATTCTC 60.118 47.826 0.00 0.00 36.21 2.87
5993 9657 2.842496 TGTCAGCAGGGAAGATGATTCT 59.158 45.455 0.00 0.00 36.21 2.40
6067 9731 3.479489 GGTGCCTACTCTACTACTCTCC 58.521 54.545 0.00 0.00 0.00 3.71
6074 9738 2.458620 GTGAAGGGTGCCTACTCTACT 58.541 52.381 0.00 0.00 36.33 2.57
6075 9739 1.481363 GGTGAAGGGTGCCTACTCTAC 59.519 57.143 0.00 0.00 36.33 2.59
6076 9740 1.861982 GGTGAAGGGTGCCTACTCTA 58.138 55.000 0.00 0.00 36.33 2.43
6077 9741 1.258445 CGGTGAAGGGTGCCTACTCT 61.258 60.000 0.00 0.00 40.08 3.24
6078 9742 1.218316 CGGTGAAGGGTGCCTACTC 59.782 63.158 0.00 0.00 31.13 2.59
6201 9898 4.963318 TGAACTGGATCTGAGAGTTTGT 57.037 40.909 0.00 0.00 30.01 2.83
6202 9899 6.814506 AATTGAACTGGATCTGAGAGTTTG 57.185 37.500 0.00 0.00 30.01 2.93
6203 9900 7.286316 ACAAAATTGAACTGGATCTGAGAGTTT 59.714 33.333 0.00 0.00 30.01 2.66
6204 9901 6.774656 ACAAAATTGAACTGGATCTGAGAGTT 59.225 34.615 0.00 0.00 32.57 3.01
6205 9902 6.302269 ACAAAATTGAACTGGATCTGAGAGT 58.698 36.000 0.00 0.00 0.00 3.24
6206 9903 6.429078 TGACAAAATTGAACTGGATCTGAGAG 59.571 38.462 0.00 0.00 0.00 3.20
6207 9904 6.298361 TGACAAAATTGAACTGGATCTGAGA 58.702 36.000 0.00 0.00 0.00 3.27
6208 9905 6.564709 TGACAAAATTGAACTGGATCTGAG 57.435 37.500 0.00 0.00 0.00 3.35
6209 9906 6.957920 TTGACAAAATTGAACTGGATCTGA 57.042 33.333 0.00 0.00 0.00 3.27
6210 9907 8.597662 AAATTGACAAAATTGAACTGGATCTG 57.402 30.769 0.00 0.00 0.00 2.90
6211 9908 8.645110 AGAAATTGACAAAATTGAACTGGATCT 58.355 29.630 0.00 0.00 0.00 2.75
6212 9909 8.706035 CAGAAATTGACAAAATTGAACTGGATC 58.294 33.333 0.00 0.00 0.00 3.36
6213 9910 8.423349 TCAGAAATTGACAAAATTGAACTGGAT 58.577 29.630 0.00 0.00 0.00 3.41
6214 9911 7.780064 TCAGAAATTGACAAAATTGAACTGGA 58.220 30.769 0.00 0.00 0.00 3.86
6215 9912 8.422973 TTCAGAAATTGACAAAATTGAACTGG 57.577 30.769 0.00 0.00 34.94 4.00
6216 9913 8.545420 CCTTCAGAAATTGACAAAATTGAACTG 58.455 33.333 0.00 0.00 34.94 3.16
6217 9914 8.260114 ACCTTCAGAAATTGACAAAATTGAACT 58.740 29.630 0.00 0.00 34.94 3.01
6218 9915 8.424274 ACCTTCAGAAATTGACAAAATTGAAC 57.576 30.769 0.00 0.00 34.94 3.18
6222 9919 9.883142 TGTTAACCTTCAGAAATTGACAAAATT 57.117 25.926 2.48 0.00 34.94 1.82
6224 9921 9.311916 CATGTTAACCTTCAGAAATTGACAAAA 57.688 29.630 2.48 0.00 34.94 2.44
6225 9922 8.690884 TCATGTTAACCTTCAGAAATTGACAAA 58.309 29.630 2.48 0.46 34.94 2.83
6226 9923 8.231692 TCATGTTAACCTTCAGAAATTGACAA 57.768 30.769 2.48 0.00 34.94 3.18
6227 9924 7.815840 TCATGTTAACCTTCAGAAATTGACA 57.184 32.000 2.48 6.80 34.94 3.58
6232 9929 9.685276 TGTGATATCATGTTAACCTTCAGAAAT 57.315 29.630 9.02 0.00 0.00 2.17
6233 9930 9.513906 TTGTGATATCATGTTAACCTTCAGAAA 57.486 29.630 9.02 0.00 0.00 2.52
6234 9931 9.513906 TTTGTGATATCATGTTAACCTTCAGAA 57.486 29.630 9.02 0.00 0.00 3.02
6235 9932 8.946085 GTTTGTGATATCATGTTAACCTTCAGA 58.054 33.333 9.02 0.00 0.00 3.27
6236 9933 8.184192 GGTTTGTGATATCATGTTAACCTTCAG 58.816 37.037 21.58 0.00 32.92 3.02
6237 9934 7.122055 GGGTTTGTGATATCATGTTAACCTTCA 59.878 37.037 24.62 9.72 35.34 3.02
6238 9935 7.122055 TGGGTTTGTGATATCATGTTAACCTTC 59.878 37.037 24.62 16.68 35.34 3.46
6239 9936 6.951198 TGGGTTTGTGATATCATGTTAACCTT 59.049 34.615 24.62 0.00 35.34 3.50
6240 9937 6.489603 TGGGTTTGTGATATCATGTTAACCT 58.510 36.000 24.62 0.00 35.34 3.50
6241 9938 6.680378 GCTGGGTTTGTGATATCATGTTAACC 60.680 42.308 21.15 21.15 34.48 2.85
6242 9939 6.127758 TGCTGGGTTTGTGATATCATGTTAAC 60.128 38.462 9.02 10.29 0.00 2.01
6243 9940 5.948758 TGCTGGGTTTGTGATATCATGTTAA 59.051 36.000 9.02 0.10 0.00 2.01
6244 9941 5.504853 TGCTGGGTTTGTGATATCATGTTA 58.495 37.500 9.02 0.00 0.00 2.41
6245 9942 4.343231 TGCTGGGTTTGTGATATCATGTT 58.657 39.130 9.02 0.00 0.00 2.71
6246 9943 3.949754 CTGCTGGGTTTGTGATATCATGT 59.050 43.478 9.02 0.00 0.00 3.21
6247 9944 3.243301 GCTGCTGGGTTTGTGATATCATG 60.243 47.826 9.02 0.00 0.00 3.07
6248 9945 2.954318 GCTGCTGGGTTTGTGATATCAT 59.046 45.455 9.02 0.00 0.00 2.45
6249 9946 2.025981 AGCTGCTGGGTTTGTGATATCA 60.026 45.455 0.00 0.00 0.00 2.15
6250 9947 2.648059 AGCTGCTGGGTTTGTGATATC 58.352 47.619 0.00 0.00 0.00 1.63
6251 9948 2.814805 AGCTGCTGGGTTTGTGATAT 57.185 45.000 0.00 0.00 0.00 1.63
6252 9949 2.680805 GCTAGCTGCTGGGTTTGTGATA 60.681 50.000 13.43 0.00 38.95 2.15
6253 9950 1.952367 GCTAGCTGCTGGGTTTGTGAT 60.952 52.381 13.43 0.00 38.95 3.06
6254 9951 0.606401 GCTAGCTGCTGGGTTTGTGA 60.606 55.000 13.43 0.00 38.95 3.58
6255 9952 1.878775 GCTAGCTGCTGGGTTTGTG 59.121 57.895 13.43 0.00 38.95 3.33
6256 9953 4.404691 GCTAGCTGCTGGGTTTGT 57.595 55.556 13.43 0.00 38.95 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.