Multiple sequence alignment - TraesCS2D01G033600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G033600 chr2D 100.000 2318 0 0 1 2318 13029977 13032294 0.000000e+00 4281.0
1 TraesCS2D01G033600 chr2D 87.056 479 47 11 1789 2255 104401362 104400887 5.670000e-146 527.0
2 TraesCS2D01G033600 chr4D 88.881 1349 146 4 1 1347 55070102 55068756 0.000000e+00 1657.0
3 TraesCS2D01G033600 chr4D 73.502 434 97 16 920 1344 54103194 54103618 5.160000e-32 148.0
4 TraesCS2D01G033600 chr3D 89.581 1027 106 1 318 1343 518353394 518354420 0.000000e+00 1303.0
5 TraesCS2D01G033600 chr3D 91.900 321 25 1 1 321 518343593 518343912 4.540000e-122 448.0
6 TraesCS2D01G033600 chr5B 85.173 1241 175 8 2 1238 566510889 566512124 0.000000e+00 1264.0
7 TraesCS2D01G033600 chr5B 76.684 1351 293 19 9 1348 401664962 401663623 0.000000e+00 730.0
8 TraesCS2D01G033600 chr5B 85.426 693 97 4 548 1238 566512224 566512914 0.000000e+00 717.0
9 TraesCS2D01G033600 chr1D 83.744 1015 158 7 332 1342 335361088 335362099 0.000000e+00 953.0
10 TraesCS2D01G033600 chr1D 92.751 538 31 4 1789 2318 154305482 154306019 0.000000e+00 771.0
11 TraesCS2D01G033600 chr1D 93.750 448 24 3 1343 1788 353642558 353643003 0.000000e+00 669.0
12 TraesCS2D01G033600 chr1D 93.722 446 25 2 1343 1788 290701601 290702043 0.000000e+00 665.0
13 TraesCS2D01G033600 chr1D 73.536 427 105 7 920 1342 73116635 73117057 3.080000e-34 156.0
14 TraesCS2D01G033600 chr5D 97.177 496 14 0 1789 2284 399687573 399688068 0.000000e+00 839.0
15 TraesCS2D01G033600 chr5D 94.717 530 16 2 1789 2318 399693551 399694068 0.000000e+00 813.0
16 TraesCS2D01G033600 chr5D 94.184 533 27 3 1789 2318 286969794 286969263 0.000000e+00 809.0
17 TraesCS2D01G033600 chr5D 93.809 533 29 3 1789 2318 286975959 286975428 0.000000e+00 798.0
18 TraesCS2D01G033600 chr5D 93.135 539 28 6 1789 2318 131056069 131056607 0.000000e+00 782.0
19 TraesCS2D01G033600 chr5D 93.156 526 27 6 1802 2318 131050026 131050551 0.000000e+00 763.0
20 TraesCS2D01G033600 chr5D 93.722 446 27 1 1343 1788 435336010 435336454 0.000000e+00 667.0
21 TraesCS2D01G033600 chr5D 79.464 112 20 2 14 123 514433721 514433831 2.470000e-10 76.8
22 TraesCS2D01G033600 chr1A 78.024 1356 275 21 1 1345 12014066 12012723 0.000000e+00 832.0
23 TraesCS2D01G033600 chr7D 94.307 527 26 3 1789 2312 530929647 530929122 0.000000e+00 804.0
24 TraesCS2D01G033600 chr6D 93.797 532 31 1 1789 2318 176754699 176754168 0.000000e+00 798.0
25 TraesCS2D01G033600 chr6D 94.170 446 26 0 1343 1788 6577771 6577326 0.000000e+00 680.0
26 TraesCS2D01G033600 chr2B 77.504 1338 275 21 17 1342 247562638 247561315 0.000000e+00 780.0
27 TraesCS2D01G033600 chr4A 94.607 445 24 0 1344 1788 1225394 1225838 0.000000e+00 689.0
28 TraesCS2D01G033600 chr4A 93.722 446 27 1 1343 1788 683254046 683254490 0.000000e+00 667.0
29 TraesCS2D01G033600 chr4A 82.429 700 118 5 646 1342 737317377 737318074 7.080000e-170 606.0
30 TraesCS2D01G033600 chr4A 79.707 478 58 25 1789 2248 104319686 104319230 2.240000e-80 309.0
31 TraesCS2D01G033600 chrUn 94.144 444 26 0 1343 1786 62962158 62961715 0.000000e+00 676.0
32 TraesCS2D01G033600 chrUn 93.722 446 28 0 1343 1788 94019332 94019777 0.000000e+00 669.0
33 TraesCS2D01G033600 chr3B 93.933 445 26 1 1344 1788 810197271 810196828 0.000000e+00 671.0
34 TraesCS2D01G033600 chr3B 83.659 716 107 7 637 1349 399502180 399502888 0.000000e+00 665.0
35 TraesCS2D01G033600 chr6B 75.587 1364 302 27 1 1349 560185092 560186439 0.000000e+00 645.0
36 TraesCS2D01G033600 chr3A 83.333 222 35 2 2 222 143481107 143480887 1.090000e-48 204.0
37 TraesCS2D01G033600 chr2A 79.464 224 42 4 1 222 552094135 552093914 3.080000e-34 156.0
38 TraesCS2D01G033600 chr1B 78.212 179 39 0 44 222 327846994 327846816 5.230000e-22 115.0
39 TraesCS2D01G033600 chr1B 75.862 145 31 4 42 184 458382400 458382258 1.150000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G033600 chr2D 13029977 13032294 2317 False 4281.0 4281 100.0000 1 2318 1 chr2D.!!$F1 2317
1 TraesCS2D01G033600 chr4D 55068756 55070102 1346 True 1657.0 1657 88.8810 1 1347 1 chr4D.!!$R1 1346
2 TraesCS2D01G033600 chr3D 518353394 518354420 1026 False 1303.0 1303 89.5810 318 1343 1 chr3D.!!$F2 1025
3 TraesCS2D01G033600 chr5B 566510889 566512914 2025 False 990.5 1264 85.2995 2 1238 2 chr5B.!!$F1 1236
4 TraesCS2D01G033600 chr5B 401663623 401664962 1339 True 730.0 730 76.6840 9 1348 1 chr5B.!!$R1 1339
5 TraesCS2D01G033600 chr1D 335361088 335362099 1011 False 953.0 953 83.7440 332 1342 1 chr1D.!!$F4 1010
6 TraesCS2D01G033600 chr1D 154305482 154306019 537 False 771.0 771 92.7510 1789 2318 1 chr1D.!!$F2 529
7 TraesCS2D01G033600 chr5D 399693551 399694068 517 False 813.0 813 94.7170 1789 2318 1 chr5D.!!$F4 529
8 TraesCS2D01G033600 chr5D 286969263 286969794 531 True 809.0 809 94.1840 1789 2318 1 chr5D.!!$R1 529
9 TraesCS2D01G033600 chr5D 286975428 286975959 531 True 798.0 798 93.8090 1789 2318 1 chr5D.!!$R2 529
10 TraesCS2D01G033600 chr5D 131056069 131056607 538 False 782.0 782 93.1350 1789 2318 1 chr5D.!!$F2 529
11 TraesCS2D01G033600 chr5D 131050026 131050551 525 False 763.0 763 93.1560 1802 2318 1 chr5D.!!$F1 516
12 TraesCS2D01G033600 chr1A 12012723 12014066 1343 True 832.0 832 78.0240 1 1345 1 chr1A.!!$R1 1344
13 TraesCS2D01G033600 chr7D 530929122 530929647 525 True 804.0 804 94.3070 1789 2312 1 chr7D.!!$R1 523
14 TraesCS2D01G033600 chr6D 176754168 176754699 531 True 798.0 798 93.7970 1789 2318 1 chr6D.!!$R2 529
15 TraesCS2D01G033600 chr2B 247561315 247562638 1323 True 780.0 780 77.5040 17 1342 1 chr2B.!!$R1 1325
16 TraesCS2D01G033600 chr4A 737317377 737318074 697 False 606.0 606 82.4290 646 1342 1 chr4A.!!$F3 696
17 TraesCS2D01G033600 chr3B 399502180 399502888 708 False 665.0 665 83.6590 637 1349 1 chr3B.!!$F1 712
18 TraesCS2D01G033600 chr6B 560185092 560186439 1347 False 645.0 645 75.5870 1 1349 1 chr6B.!!$F1 1348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 871 0.037326 GTGGCCTCGTCTGTTGATGA 60.037 55.0 3.32 0.0 36.81 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1758 1.089112 TGGATGCAATGTGCTCGAAG 58.911 50.0 0.0 0.0 45.31 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.162681 ACTGCAGACTTAATTGGGTGC 58.837 47.619 23.35 0.00 0.00 5.01
135 137 4.938080 ACATGGATGTACGTGAGATTCTC 58.062 43.478 6.73 6.73 39.68 2.87
147 149 6.893759 ACGTGAGATTCTCAAGATCTATACG 58.106 40.000 28.74 20.49 42.46 3.06
260 262 0.109723 GCCGCCCCTGGTATGATAAA 59.890 55.000 0.00 0.00 0.00 1.40
269 271 3.191669 CTGGTATGATAAACGCGTCCAA 58.808 45.455 14.44 0.39 0.00 3.53
348 350 4.202409 CCCCTTAAGATGAGGATCTTGTCC 60.202 50.000 3.36 0.00 46.53 4.02
374 376 0.247736 GTGGTCTCAGGTGCACTAGG 59.752 60.000 17.98 6.70 0.00 3.02
433 436 7.446106 ACAAGGGATACATGTCCTTTATGTA 57.554 36.000 13.28 0.00 43.05 2.29
523 526 2.253610 TGAGGTCGGTGTGGAGTTTAT 58.746 47.619 0.00 0.00 0.00 1.40
560 563 0.904865 CAGGACACAGGGCAGGACTA 60.905 60.000 0.00 0.00 0.00 2.59
569 572 2.026822 CAGGGCAGGACTAGTTGTTGAT 60.027 50.000 0.00 0.00 0.00 2.57
578 581 5.760253 AGGACTAGTTGTTGATTGTGTTGAG 59.240 40.000 0.00 0.00 0.00 3.02
625 628 1.542915 GTGTGATCATGCTGCTTTGGT 59.457 47.619 0.00 0.00 0.00 3.67
672 675 2.092323 GTACATGGAAAGGAAGTGCCC 58.908 52.381 0.00 0.00 37.37 5.36
674 677 1.077663 ACATGGAAAGGAAGTGCCCAT 59.922 47.619 0.00 0.00 38.07 4.00
691 694 0.599558 CATGGTGGCCTCAACAGTTG 59.400 55.000 6.99 6.99 44.69 3.16
866 871 0.037326 GTGGCCTCGTCTGTTGATGA 60.037 55.000 3.32 0.00 36.81 2.92
895 900 0.396435 ACAGTCGGATGGTTCAGCAA 59.604 50.000 0.00 0.00 0.00 3.91
915 920 4.438608 GCAACGGCATGTATGATTTTGAGA 60.439 41.667 0.00 0.00 40.72 3.27
997 1003 2.938451 CTGGAAGTAGAATTGCATGCGA 59.062 45.455 10.79 10.79 29.62 5.10
1014 1020 1.453155 CGATAATGCAGGGTATGGCC 58.547 55.000 0.00 0.00 0.00 5.36
1040 1046 4.456280 CTATCCAGCACTGTGAACTACA 57.544 45.455 12.86 0.00 37.78 2.74
1055 1061 8.306313 TGTGAACTACATATCATAGTCCAGTT 57.694 34.615 0.00 0.00 33.42 3.16
1072 1078 0.318762 GTTGGACTCTTCTGTCGCCT 59.681 55.000 0.00 0.00 37.81 5.52
1114 1120 5.150715 ACATCTTATCCAGATCTGCCTACA 58.849 41.667 17.76 0.00 40.67 2.74
1115 1121 5.784390 ACATCTTATCCAGATCTGCCTACAT 59.216 40.000 17.76 5.99 40.67 2.29
1191 1197 5.090652 TGAAAATTAGTCGTGTGCAGAAC 57.909 39.130 0.00 0.00 0.00 3.01
1278 1285 1.202879 GGTCCACCATGTGTTGAGGAA 60.203 52.381 0.00 0.00 33.09 3.36
1325 1333 8.517878 CCCTATGCATATGGAATAAAACTCTTG 58.482 37.037 20.16 0.00 29.06 3.02
1361 1369 7.544804 AAAAAGAGAAAATTATGCAGACCCT 57.455 32.000 0.00 0.00 0.00 4.34
1362 1370 6.765915 AAAGAGAAAATTATGCAGACCCTC 57.234 37.500 0.00 0.00 0.00 4.30
1363 1371 5.441718 AGAGAAAATTATGCAGACCCTCA 57.558 39.130 0.00 0.00 0.00 3.86
1364 1372 5.819991 AGAGAAAATTATGCAGACCCTCAA 58.180 37.500 0.00 0.00 0.00 3.02
1366 1374 6.320672 AGAGAAAATTATGCAGACCCTCAATG 59.679 38.462 0.00 0.00 0.00 2.82
1367 1375 5.954150 AGAAAATTATGCAGACCCTCAATGT 59.046 36.000 0.00 0.00 0.00 2.71
1368 1376 7.118723 AGAAAATTATGCAGACCCTCAATGTA 58.881 34.615 0.00 0.00 0.00 2.29
1369 1377 6.699575 AAATTATGCAGACCCTCAATGTAC 57.300 37.500 0.00 0.00 0.00 2.90
1370 1378 5.636903 ATTATGCAGACCCTCAATGTACT 57.363 39.130 0.00 0.00 0.00 2.73
1371 1379 3.550437 ATGCAGACCCTCAATGTACTC 57.450 47.619 0.00 0.00 0.00 2.59
1372 1380 1.204704 TGCAGACCCTCAATGTACTCG 59.795 52.381 0.00 0.00 0.00 4.18
1373 1381 1.476891 GCAGACCCTCAATGTACTCGA 59.523 52.381 0.00 0.00 0.00 4.04
1374 1382 2.094182 GCAGACCCTCAATGTACTCGAA 60.094 50.000 0.00 0.00 0.00 3.71
1375 1383 3.775202 CAGACCCTCAATGTACTCGAAG 58.225 50.000 0.00 0.00 0.00 3.79
1378 1386 2.233922 ACCCTCAATGTACTCGAAGGTG 59.766 50.000 0.00 0.00 0.00 4.00
1379 1387 2.271800 CCTCAATGTACTCGAAGGTGC 58.728 52.381 0.00 0.00 0.00 5.01
1381 1389 1.271379 TCAATGTACTCGAAGGTGCGT 59.729 47.619 0.00 0.00 0.00 5.24
1382 1390 1.654105 CAATGTACTCGAAGGTGCGTC 59.346 52.381 0.00 0.00 0.00 5.19
1383 1391 1.174783 ATGTACTCGAAGGTGCGTCT 58.825 50.000 0.00 0.00 0.00 4.18
1384 1392 0.240145 TGTACTCGAAGGTGCGTCTG 59.760 55.000 0.00 0.00 0.00 3.51
1386 1394 0.520404 TACTCGAAGGTGCGTCTGTC 59.480 55.000 0.00 0.00 0.00 3.51
1387 1395 1.285950 CTCGAAGGTGCGTCTGTCA 59.714 57.895 0.00 0.00 0.00 3.58
1388 1396 1.004277 CTCGAAGGTGCGTCTGTCAC 61.004 60.000 0.00 0.00 0.00 3.67
1392 1400 2.646719 GGTGCGTCTGTCACCGTA 59.353 61.111 0.00 0.00 43.75 4.02
1393 1401 1.731969 GGTGCGTCTGTCACCGTAC 60.732 63.158 0.00 0.00 43.75 3.67
1394 1402 1.008194 GTGCGTCTGTCACCGTACA 60.008 57.895 0.00 0.00 39.12 2.90
1396 1404 0.109458 TGCGTCTGTCACCGTACATC 60.109 55.000 0.00 0.00 0.00 3.06
1397 1405 0.801067 GCGTCTGTCACCGTACATCC 60.801 60.000 0.00 0.00 0.00 3.51
1400 1408 2.416836 CGTCTGTCACCGTACATCCATT 60.417 50.000 0.00 0.00 0.00 3.16
1401 1409 2.930040 GTCTGTCACCGTACATCCATTG 59.070 50.000 0.00 0.00 0.00 2.82
1402 1410 1.665679 CTGTCACCGTACATCCATTGC 59.334 52.381 0.00 0.00 0.00 3.56
1403 1411 1.014352 GTCACCGTACATCCATTGCC 58.986 55.000 0.00 0.00 0.00 4.52
1405 1413 1.153249 ACCGTACATCCATTGCCGG 60.153 57.895 0.00 0.00 44.52 6.13
1406 1414 1.153249 CCGTACATCCATTGCCGGT 60.153 57.895 1.90 0.00 37.99 5.28
1408 1416 0.655733 CGTACATCCATTGCCGGTTC 59.344 55.000 1.90 0.00 0.00 3.62
1409 1417 1.745232 GTACATCCATTGCCGGTTCA 58.255 50.000 1.90 0.00 0.00 3.18
1410 1418 2.297701 GTACATCCATTGCCGGTTCAT 58.702 47.619 1.90 0.00 0.00 2.57
1411 1419 1.392589 ACATCCATTGCCGGTTCATC 58.607 50.000 1.90 0.00 0.00 2.92
1412 1420 1.064463 ACATCCATTGCCGGTTCATCT 60.064 47.619 1.90 0.00 0.00 2.90
1414 1422 2.325583 TCCATTGCCGGTTCATCTAC 57.674 50.000 1.90 0.00 0.00 2.59
1415 1423 1.557371 TCCATTGCCGGTTCATCTACA 59.443 47.619 1.90 0.00 0.00 2.74
1416 1424 2.172505 TCCATTGCCGGTTCATCTACAT 59.827 45.455 1.90 0.00 0.00 2.29
1417 1425 2.291465 CCATTGCCGGTTCATCTACATG 59.709 50.000 1.90 0.00 0.00 3.21
1418 1426 1.378531 TTGCCGGTTCATCTACATGC 58.621 50.000 1.90 0.00 0.00 4.06
1419 1427 0.251634 TGCCGGTTCATCTACATGCA 59.748 50.000 1.90 0.00 0.00 3.96
1421 1429 1.949525 GCCGGTTCATCTACATGCATT 59.050 47.619 1.90 0.00 0.00 3.56
1422 1430 3.138304 GCCGGTTCATCTACATGCATTA 58.862 45.455 1.90 0.00 0.00 1.90
1424 1432 4.935205 GCCGGTTCATCTACATGCATTATA 59.065 41.667 1.90 0.00 0.00 0.98
1425 1433 5.586243 GCCGGTTCATCTACATGCATTATAT 59.414 40.000 1.90 0.00 0.00 0.86
1426 1434 6.761242 GCCGGTTCATCTACATGCATTATATA 59.239 38.462 1.90 0.00 0.00 0.86
1427 1435 7.279981 GCCGGTTCATCTACATGCATTATATAA 59.720 37.037 1.90 0.00 0.00 0.98
1428 1436 9.330063 CCGGTTCATCTACATGCATTATATAAT 57.670 33.333 0.00 1.91 0.00 1.28
1456 1464 8.458573 AGTGTATCAAAAACCATTACAGAACA 57.541 30.769 0.00 0.00 0.00 3.18
1457 1465 9.077885 AGTGTATCAAAAACCATTACAGAACAT 57.922 29.630 0.00 0.00 0.00 2.71
1458 1466 9.341899 GTGTATCAAAAACCATTACAGAACATC 57.658 33.333 0.00 0.00 0.00 3.06
1459 1467 9.072375 TGTATCAAAAACCATTACAGAACATCA 57.928 29.630 0.00 0.00 0.00 3.07
1461 1469 8.991243 ATCAAAAACCATTACAGAACATCATG 57.009 30.769 0.00 0.00 0.00 3.07
1462 1470 8.175925 TCAAAAACCATTACAGAACATCATGA 57.824 30.769 0.00 0.00 0.00 3.07
1463 1471 8.637099 TCAAAAACCATTACAGAACATCATGAA 58.363 29.630 0.00 0.00 0.00 2.57
1464 1472 9.426837 CAAAAACCATTACAGAACATCATGAAT 57.573 29.630 0.00 0.00 0.00 2.57
1467 1475 9.685276 AAACCATTACAGAACATCATGAATAGA 57.315 29.630 0.00 0.00 0.00 1.98
1468 1476 8.899427 ACCATTACAGAACATCATGAATAGAG 57.101 34.615 0.00 0.00 0.00 2.43
1469 1477 8.708378 ACCATTACAGAACATCATGAATAGAGA 58.292 33.333 0.00 0.00 0.00 3.10
1470 1478 9.551734 CCATTACAGAACATCATGAATAGAGAA 57.448 33.333 0.00 0.00 0.00 2.87
1473 1481 9.591792 TTACAGAACATCATGAATAGAGAAGTG 57.408 33.333 0.00 0.00 0.00 3.16
1474 1482 7.845037 ACAGAACATCATGAATAGAGAAGTGA 58.155 34.615 0.00 0.00 0.00 3.41
1475 1483 7.763528 ACAGAACATCATGAATAGAGAAGTGAC 59.236 37.037 0.00 0.00 0.00 3.67
1476 1484 7.224362 CAGAACATCATGAATAGAGAAGTGACC 59.776 40.741 0.00 0.00 0.00 4.02
1477 1485 6.550938 ACATCATGAATAGAGAAGTGACCA 57.449 37.500 0.00 0.00 0.00 4.02
1478 1486 6.950842 ACATCATGAATAGAGAAGTGACCAA 58.049 36.000 0.00 0.00 0.00 3.67
1479 1487 7.397221 ACATCATGAATAGAGAAGTGACCAAA 58.603 34.615 0.00 0.00 0.00 3.28
1480 1488 8.051535 ACATCATGAATAGAGAAGTGACCAAAT 58.948 33.333 0.00 0.00 0.00 2.32
1481 1489 8.900781 CATCATGAATAGAGAAGTGACCAAATT 58.099 33.333 0.00 0.00 0.00 1.82
1483 1491 9.958180 TCATGAATAGAGAAGTGACCAAATTAA 57.042 29.630 0.00 0.00 0.00 1.40
1491 1499 9.574516 AGAGAAGTGACCAAATTAATACAAGTT 57.425 29.630 0.00 0.00 0.00 2.66
1492 1500 9.827411 GAGAAGTGACCAAATTAATACAAGTTC 57.173 33.333 0.00 0.00 0.00 3.01
1493 1501 9.349713 AGAAGTGACCAAATTAATACAAGTTCA 57.650 29.630 0.00 0.00 0.00 3.18
1496 1504 8.450964 AGTGACCAAATTAATACAAGTTCATCG 58.549 33.333 0.00 0.00 0.00 3.84
1497 1505 8.234546 GTGACCAAATTAATACAAGTTCATCGT 58.765 33.333 0.00 0.00 0.00 3.73
1498 1506 8.447833 TGACCAAATTAATACAAGTTCATCGTC 58.552 33.333 0.00 0.00 0.00 4.20
1499 1507 8.330466 ACCAAATTAATACAAGTTCATCGTCA 57.670 30.769 0.00 0.00 0.00 4.35
1500 1508 8.956426 ACCAAATTAATACAAGTTCATCGTCAT 58.044 29.630 0.00 0.00 0.00 3.06
1510 1518 8.330466 ACAAGTTCATCGTCATATTAAAACCA 57.670 30.769 0.00 0.00 0.00 3.67
1511 1519 8.788806 ACAAGTTCATCGTCATATTAAAACCAA 58.211 29.630 0.00 0.00 0.00 3.67
1512 1520 9.619316 CAAGTTCATCGTCATATTAAAACCAAA 57.381 29.630 0.00 0.00 0.00 3.28
1513 1521 9.840427 AAGTTCATCGTCATATTAAAACCAAAG 57.160 29.630 0.00 0.00 0.00 2.77
1514 1522 9.010029 AGTTCATCGTCATATTAAAACCAAAGT 57.990 29.630 0.00 0.00 0.00 2.66
1517 1525 9.438228 TCATCGTCATATTAAAACCAAAGTACA 57.562 29.630 0.00 0.00 0.00 2.90
1518 1526 9.702726 CATCGTCATATTAAAACCAAAGTACAG 57.297 33.333 0.00 0.00 0.00 2.74
1519 1527 8.836268 TCGTCATATTAAAACCAAAGTACAGT 57.164 30.769 0.00 0.00 0.00 3.55
1520 1528 9.926158 TCGTCATATTAAAACCAAAGTACAGTA 57.074 29.630 0.00 0.00 0.00 2.74
1527 1535 9.787435 ATTAAAACCAAAGTACAGTAGTGATCA 57.213 29.630 4.09 0.00 0.00 2.92
1528 1536 9.616156 TTAAAACCAAAGTACAGTAGTGATCAA 57.384 29.630 4.09 0.00 0.00 2.57
1529 1537 8.514330 AAAACCAAAGTACAGTAGTGATCAAA 57.486 30.769 4.09 0.00 0.00 2.69
1530 1538 8.691661 AAACCAAAGTACAGTAGTGATCAAAT 57.308 30.769 4.09 0.00 0.00 2.32
1531 1539 7.672983 ACCAAAGTACAGTAGTGATCAAATG 57.327 36.000 4.09 0.00 0.00 2.32
1532 1540 7.224297 ACCAAAGTACAGTAGTGATCAAATGT 58.776 34.615 4.09 0.81 0.00 2.71
1533 1541 7.719633 ACCAAAGTACAGTAGTGATCAAATGTT 59.280 33.333 4.09 0.00 0.00 2.71
1534 1542 9.214957 CCAAAGTACAGTAGTGATCAAATGTTA 57.785 33.333 4.09 0.00 0.00 2.41
1582 1590 8.430801 AAGTTCATACATAGTTCTCATTGAGC 57.569 34.615 8.89 0.00 0.00 4.26
1583 1591 7.559486 AGTTCATACATAGTTCTCATTGAGCA 58.441 34.615 8.89 0.00 0.00 4.26
1584 1592 8.043113 AGTTCATACATAGTTCTCATTGAGCAA 58.957 33.333 8.89 2.17 0.00 3.91
1585 1593 7.776933 TCATACATAGTTCTCATTGAGCAAC 57.223 36.000 8.89 12.98 0.00 4.17
1586 1594 7.330262 TCATACATAGTTCTCATTGAGCAACA 58.670 34.615 20.87 12.73 0.00 3.33
1587 1595 7.989170 TCATACATAGTTCTCATTGAGCAACAT 59.011 33.333 20.87 13.75 0.00 2.71
1588 1596 9.264719 CATACATAGTTCTCATTGAGCAACATA 57.735 33.333 20.87 14.31 0.00 2.29
1591 1599 9.486497 ACATAGTTCTCATTGAGCAACATATAG 57.514 33.333 20.87 12.94 0.00 1.31
1592 1600 6.857777 AGTTCTCATTGAGCAACATATAGC 57.142 37.500 20.87 3.81 0.00 2.97
1593 1601 6.590068 AGTTCTCATTGAGCAACATATAGCT 58.410 36.000 20.87 0.00 45.25 3.32
1648 1656 9.755804 TGAAACTATGTAAAACATTTCAATGCA 57.244 25.926 0.00 0.00 39.88 3.96
1651 1659 9.539825 AACTATGTAAAACATTTCAATGCAACA 57.460 25.926 0.00 0.63 39.88 3.33
1652 1660 9.539825 ACTATGTAAAACATTTCAATGCAACAA 57.460 25.926 0.00 0.00 39.88 2.83
1653 1661 9.796062 CTATGTAAAACATTTCAATGCAACAAC 57.204 29.630 0.00 0.00 39.88 3.32
1654 1662 7.601073 TGTAAAACATTTCAATGCAACAACA 57.399 28.000 0.00 0.00 40.04 3.33
1655 1663 8.032952 TGTAAAACATTTCAATGCAACAACAA 57.967 26.923 0.00 0.00 40.04 2.83
1656 1664 8.506437 TGTAAAACATTTCAATGCAACAACAAA 58.494 25.926 0.00 0.00 40.04 2.83
1657 1665 9.500864 GTAAAACATTTCAATGCAACAACAAAT 57.499 25.926 0.00 0.00 40.04 2.32
1658 1666 7.972623 AAACATTTCAATGCAACAACAAATG 57.027 28.000 13.89 13.89 40.04 2.32
1659 1667 6.680874 ACATTTCAATGCAACAACAAATGT 57.319 29.167 14.77 14.77 41.29 2.71
1660 1668 6.487960 ACATTTCAATGCAACAACAAATGTG 58.512 32.000 17.68 0.00 40.95 3.21
1661 1669 6.315642 ACATTTCAATGCAACAACAAATGTGA 59.684 30.769 17.68 0.00 40.95 3.58
1662 1670 6.922247 TTTCAATGCAACAACAAATGTGAT 57.078 29.167 0.00 0.00 42.99 3.06
1663 1671 6.528014 TTCAATGCAACAACAAATGTGATC 57.472 33.333 0.00 0.00 42.99 2.92
1664 1672 5.598769 TCAATGCAACAACAAATGTGATCA 58.401 33.333 0.00 0.00 42.99 2.92
1665 1673 5.692654 TCAATGCAACAACAAATGTGATCAG 59.307 36.000 0.00 0.00 42.99 2.90
1666 1674 4.915158 TGCAACAACAAATGTGATCAGA 57.085 36.364 0.00 0.00 42.99 3.27
1667 1675 5.259832 TGCAACAACAAATGTGATCAGAA 57.740 34.783 0.00 0.00 42.99 3.02
1668 1676 5.845103 TGCAACAACAAATGTGATCAGAAT 58.155 33.333 0.00 0.00 42.99 2.40
1669 1677 5.921976 TGCAACAACAAATGTGATCAGAATC 59.078 36.000 0.00 0.00 42.99 2.52
1670 1678 5.060077 GCAACAACAAATGTGATCAGAATCG 59.940 40.000 0.00 0.00 42.99 3.34
1671 1679 4.726416 ACAACAAATGTGATCAGAATCGC 58.274 39.130 0.00 0.00 41.93 4.58
1672 1680 4.100529 CAACAAATGTGATCAGAATCGCC 58.899 43.478 0.00 0.00 40.94 5.54
1673 1681 3.346315 ACAAATGTGATCAGAATCGCCA 58.654 40.909 0.00 0.00 40.94 5.69
1674 1682 3.127548 ACAAATGTGATCAGAATCGCCAC 59.872 43.478 0.00 0.00 40.94 5.01
1675 1683 2.996249 ATGTGATCAGAATCGCCACT 57.004 45.000 0.00 0.00 40.94 4.00
1676 1684 4.406648 AATGTGATCAGAATCGCCACTA 57.593 40.909 0.00 0.00 40.94 2.74
1677 1685 3.885724 TGTGATCAGAATCGCCACTAA 57.114 42.857 0.00 0.00 40.94 2.24
1678 1686 3.785486 TGTGATCAGAATCGCCACTAAG 58.215 45.455 0.00 0.00 40.94 2.18
1679 1687 3.126831 GTGATCAGAATCGCCACTAAGG 58.873 50.000 0.00 0.00 36.58 2.69
1680 1688 2.766263 TGATCAGAATCGCCACTAAGGT 59.234 45.455 0.00 0.00 40.61 3.50
1681 1689 3.958147 TGATCAGAATCGCCACTAAGGTA 59.042 43.478 0.00 0.00 40.61 3.08
1682 1690 4.404394 TGATCAGAATCGCCACTAAGGTAA 59.596 41.667 0.00 0.00 40.61 2.85
1683 1691 4.119442 TCAGAATCGCCACTAAGGTAAC 57.881 45.455 0.00 0.00 40.61 2.50
1684 1692 3.512329 TCAGAATCGCCACTAAGGTAACA 59.488 43.478 0.00 0.00 40.61 2.41
1685 1693 4.020928 TCAGAATCGCCACTAAGGTAACAA 60.021 41.667 0.00 0.00 40.61 2.83
1686 1694 4.876107 CAGAATCGCCACTAAGGTAACAAT 59.124 41.667 0.00 0.00 40.61 2.71
1687 1695 5.354234 CAGAATCGCCACTAAGGTAACAATT 59.646 40.000 0.00 0.00 40.61 2.32
1688 1696 5.354234 AGAATCGCCACTAAGGTAACAATTG 59.646 40.000 3.24 3.24 40.61 2.32
1689 1697 4.274602 TCGCCACTAAGGTAACAATTGA 57.725 40.909 13.59 0.00 40.61 2.57
1690 1698 4.839121 TCGCCACTAAGGTAACAATTGAT 58.161 39.130 13.59 2.25 40.61 2.57
1691 1699 4.873827 TCGCCACTAAGGTAACAATTGATC 59.126 41.667 13.59 1.78 40.61 2.92
1692 1700 4.035208 CGCCACTAAGGTAACAATTGATCC 59.965 45.833 13.59 10.81 40.61 3.36
1693 1701 4.947388 GCCACTAAGGTAACAATTGATCCA 59.053 41.667 13.59 0.00 40.61 3.41
1694 1702 5.417580 GCCACTAAGGTAACAATTGATCCAA 59.582 40.000 13.59 3.53 40.61 3.53
1695 1703 6.625081 GCCACTAAGGTAACAATTGATCCAAC 60.625 42.308 13.59 2.52 40.61 3.77
1696 1704 6.403200 CCACTAAGGTAACAATTGATCCAACG 60.403 42.308 13.59 6.01 41.41 4.10
1697 1705 5.646360 ACTAAGGTAACAATTGATCCAACGG 59.354 40.000 13.59 5.97 41.41 4.44
1698 1706 2.752903 AGGTAACAATTGATCCAACGGC 59.247 45.455 13.59 0.00 41.41 5.68
1699 1707 2.490115 GGTAACAATTGATCCAACGGCA 59.510 45.455 13.59 0.00 0.00 5.69
1700 1708 3.130340 GGTAACAATTGATCCAACGGCAT 59.870 43.478 13.59 0.00 0.00 4.40
1701 1709 4.336993 GGTAACAATTGATCCAACGGCATA 59.663 41.667 13.59 0.00 0.00 3.14
1702 1710 5.163602 GGTAACAATTGATCCAACGGCATAA 60.164 40.000 13.59 0.00 0.00 1.90
1703 1711 5.596836 AACAATTGATCCAACGGCATAAT 57.403 34.783 13.59 0.00 0.00 1.28
1704 1712 4.935702 ACAATTGATCCAACGGCATAATG 58.064 39.130 13.59 0.00 0.00 1.90
1705 1713 4.644234 ACAATTGATCCAACGGCATAATGA 59.356 37.500 13.59 0.00 0.00 2.57
1706 1714 5.302568 ACAATTGATCCAACGGCATAATGAT 59.697 36.000 13.59 0.00 0.00 2.45
1707 1715 6.489700 ACAATTGATCCAACGGCATAATGATA 59.510 34.615 13.59 0.00 0.00 2.15
1708 1716 5.940192 TTGATCCAACGGCATAATGATAC 57.060 39.130 0.00 0.00 0.00 2.24
1709 1717 4.323417 TGATCCAACGGCATAATGATACC 58.677 43.478 0.00 0.00 0.00 2.73
1710 1718 3.847671 TCCAACGGCATAATGATACCA 57.152 42.857 0.00 0.00 0.00 3.25
1711 1719 4.157849 TCCAACGGCATAATGATACCAA 57.842 40.909 0.00 0.00 0.00 3.67
1712 1720 4.133820 TCCAACGGCATAATGATACCAAG 58.866 43.478 0.00 0.00 0.00 3.61
1713 1721 3.304659 CCAACGGCATAATGATACCAAGC 60.305 47.826 0.00 0.00 0.00 4.01
1714 1722 2.143122 ACGGCATAATGATACCAAGCG 58.857 47.619 0.00 0.00 0.00 4.68
1715 1723 2.143122 CGGCATAATGATACCAAGCGT 58.857 47.619 0.00 0.00 0.00 5.07
1716 1724 2.157668 CGGCATAATGATACCAAGCGTC 59.842 50.000 0.00 0.00 0.00 5.19
1717 1725 3.138304 GGCATAATGATACCAAGCGTCA 58.862 45.455 0.00 0.00 0.00 4.35
1718 1726 3.058914 GGCATAATGATACCAAGCGTCAC 60.059 47.826 0.00 0.00 0.00 3.67
1719 1727 3.809832 GCATAATGATACCAAGCGTCACT 59.190 43.478 0.00 0.00 0.00 3.41
1720 1728 4.988540 GCATAATGATACCAAGCGTCACTA 59.011 41.667 0.00 0.00 0.00 2.74
1721 1729 5.639506 GCATAATGATACCAAGCGTCACTAT 59.360 40.000 0.00 0.00 0.00 2.12
1722 1730 6.183360 GCATAATGATACCAAGCGTCACTATC 60.183 42.308 0.00 0.00 0.00 2.08
1723 1731 4.937201 ATGATACCAAGCGTCACTATCA 57.063 40.909 0.00 0.00 0.00 2.15
1724 1732 4.729227 TGATACCAAGCGTCACTATCAA 57.271 40.909 0.00 0.00 0.00 2.57
1736 1744 5.853282 GCGTCACTATCAATGGCATATTTTC 59.147 40.000 0.00 0.00 0.00 2.29
1738 1746 7.095229 GCGTCACTATCAATGGCATATTTTCTA 60.095 37.037 0.00 0.00 0.00 2.10
1739 1747 8.773645 CGTCACTATCAATGGCATATTTTCTAA 58.226 33.333 0.00 0.00 0.00 2.10
1758 1766 9.653287 TTTTCTAATCTTTCTAATCTTCGAGCA 57.347 29.630 0.00 0.00 0.00 4.26
1759 1767 8.635877 TTCTAATCTTTCTAATCTTCGAGCAC 57.364 34.615 0.00 0.00 0.00 4.40
1760 1768 7.772166 TCTAATCTTTCTAATCTTCGAGCACA 58.228 34.615 0.00 0.00 0.00 4.57
1761 1769 8.417106 TCTAATCTTTCTAATCTTCGAGCACAT 58.583 33.333 0.00 0.00 0.00 3.21
1762 1770 7.856145 AATCTTTCTAATCTTCGAGCACATT 57.144 32.000 0.00 0.00 0.00 2.71
1764 1772 4.864916 TTCTAATCTTCGAGCACATTGC 57.135 40.909 0.00 0.00 45.46 3.56
1776 1784 3.728076 GCACATTGCATCCATCTTGAT 57.272 42.857 0.00 0.00 44.26 2.57
1778 1786 3.318275 GCACATTGCATCCATCTTGATCT 59.682 43.478 0.00 0.00 44.26 2.75
1779 1787 4.202121 GCACATTGCATCCATCTTGATCTT 60.202 41.667 0.00 0.00 44.26 2.40
1780 1788 5.009310 GCACATTGCATCCATCTTGATCTTA 59.991 40.000 0.00 0.00 44.26 2.10
1781 1789 6.294564 GCACATTGCATCCATCTTGATCTTAT 60.295 38.462 0.00 0.00 44.26 1.73
1783 1791 7.002276 ACATTGCATCCATCTTGATCTTATGA 58.998 34.615 0.00 0.00 0.00 2.15
1785 1793 7.683437 TTGCATCCATCTTGATCTTATGATC 57.317 36.000 10.87 10.87 46.89 2.92
1966 2256 6.546034 GGTAATAACCCTACATGCTGTTTGAT 59.454 38.462 0.00 0.00 40.21 2.57
1998 2288 2.343484 TATGATCACGGGAGAGTCGT 57.657 50.000 0.00 0.00 41.93 4.34
2078 2377 1.134788 CCGCCCCTCCTTATATAAGCG 60.135 57.143 15.86 14.97 41.84 4.68
2200 2499 6.500589 TGGGCTTCTTACAATCTAGCTTAT 57.499 37.500 0.00 0.00 32.58 1.73
2313 2624 2.288825 CGGGTTACATGACTGTGTCTGT 60.289 50.000 0.00 4.32 36.79 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.040955 TGCAGTTATGTTTTGGTGTTATTGGA 59.959 34.615 0.00 0.00 0.00 3.53
52 54 4.708421 ACCATGTTCATCCAAGAAATCAGG 59.292 41.667 0.00 0.00 0.00 3.86
224 226 2.359850 CGCCCAAAGTAGCCAGCA 60.360 61.111 0.00 0.00 0.00 4.41
245 247 1.202604 ACGCGTTTATCATACCAGGGG 60.203 52.381 5.58 0.00 0.00 4.79
260 262 0.816018 TGGATTGTTGTTGGACGCGT 60.816 50.000 13.85 13.85 0.00 6.01
269 271 1.341383 GCTCCCCAGATGGATTGTTGT 60.341 52.381 0.00 0.00 37.39 3.32
348 350 0.322975 CACCTGAGACCACCTTCCAG 59.677 60.000 0.00 0.00 0.00 3.86
395 398 4.067972 TCCCTTGTAGAAATATGACGGC 57.932 45.455 0.00 0.00 0.00 5.68
433 436 2.646798 AGCTGGTTTCCTTCTCCTTCAT 59.353 45.455 0.00 0.00 0.00 2.57
434 437 2.057922 AGCTGGTTTCCTTCTCCTTCA 58.942 47.619 0.00 0.00 0.00 3.02
486 489 2.389059 CTCATCTATCGCCACACTTCG 58.611 52.381 0.00 0.00 0.00 3.79
532 535 0.820891 CCTGTGTCCTGCAACAGCTT 60.821 55.000 10.23 0.00 0.00 3.74
560 563 7.276218 CACAATTTCTCAACACAATCAACAACT 59.724 33.333 0.00 0.00 0.00 3.16
569 572 6.698008 ACTCATCACAATTTCTCAACACAA 57.302 33.333 0.00 0.00 0.00 3.33
578 581 5.649395 TCCCTCATCAACTCATCACAATTTC 59.351 40.000 0.00 0.00 0.00 2.17
625 628 1.972075 TGACCGGAGTGACCAAATACA 59.028 47.619 9.46 0.00 38.90 2.29
672 675 0.599558 CAACTGTTGAGGCCACCATG 59.400 55.000 15.26 0.00 0.00 3.66
674 677 0.840617 TACAACTGTTGAGGCCACCA 59.159 50.000 26.00 0.00 0.00 4.17
681 684 7.369803 ACTCTGCAAATATACAACTGTTGAG 57.630 36.000 26.00 10.91 0.00 3.02
682 685 7.744087 AACTCTGCAAATATACAACTGTTGA 57.256 32.000 26.00 10.74 0.00 3.18
854 859 7.542477 ACTGTAAGAAATACTCATCAACAGACG 59.458 37.037 5.72 0.00 36.31 4.18
866 871 5.934402 ACCATCCGACTGTAAGAAATACT 57.066 39.130 0.00 0.00 37.43 2.12
869 874 5.160607 TGAACCATCCGACTGTAAGAAAT 57.839 39.130 0.00 0.00 37.43 2.17
895 900 4.336433 CCTTCTCAAAATCATACATGCCGT 59.664 41.667 0.00 0.00 0.00 5.68
915 920 3.959495 ATAACACTCCCATCATGCCTT 57.041 42.857 0.00 0.00 0.00 4.35
1055 1061 0.603569 GAAGGCGACAGAAGAGTCCA 59.396 55.000 0.00 0.00 35.07 4.02
1072 1078 0.756294 TCACCAGACAAAGCGGAGAA 59.244 50.000 0.00 0.00 0.00 2.87
1094 1100 4.020751 GCATGTAGGCAGATCTGGATAAGA 60.021 45.833 23.89 0.00 39.94 2.10
1114 1120 3.611293 CGAATCTCAGCGACTAGATGCAT 60.611 47.826 0.00 0.00 35.94 3.96
1115 1121 2.287248 CGAATCTCAGCGACTAGATGCA 60.287 50.000 12.26 0.00 35.94 3.96
1191 1197 1.656652 CCAAACGATCTGCTACCCTG 58.343 55.000 0.00 0.00 0.00 4.45
1229 1235 4.562347 CCAGCCATACATCAGTAGTGATCC 60.562 50.000 10.23 0.00 41.85 3.36
1278 1285 4.327680 GGTTACAATCAAGAGGCAAGAGT 58.672 43.478 0.00 0.00 0.00 3.24
1350 1358 3.068165 CGAGTACATTGAGGGTCTGCATA 59.932 47.826 0.00 0.00 0.00 3.14
1351 1359 2.159043 CGAGTACATTGAGGGTCTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
1352 1360 1.204704 CGAGTACATTGAGGGTCTGCA 59.795 52.381 0.00 0.00 0.00 4.41
1354 1362 3.429547 CCTTCGAGTACATTGAGGGTCTG 60.430 52.174 0.00 0.00 34.46 3.51
1355 1363 2.761208 CCTTCGAGTACATTGAGGGTCT 59.239 50.000 0.00 0.00 34.46 3.85
1356 1364 2.496470 ACCTTCGAGTACATTGAGGGTC 59.504 50.000 9.16 0.00 46.46 4.46
1358 1366 2.893637 CACCTTCGAGTACATTGAGGG 58.106 52.381 8.12 8.12 43.04 4.30
1359 1367 2.271800 GCACCTTCGAGTACATTGAGG 58.728 52.381 0.00 0.00 0.00 3.86
1360 1368 1.920574 CGCACCTTCGAGTACATTGAG 59.079 52.381 0.00 0.00 0.00 3.02
1361 1369 1.271379 ACGCACCTTCGAGTACATTGA 59.729 47.619 0.00 0.00 0.00 2.57
1362 1370 1.654105 GACGCACCTTCGAGTACATTG 59.346 52.381 0.00 0.00 0.00 2.82
1363 1371 1.544691 AGACGCACCTTCGAGTACATT 59.455 47.619 0.00 0.00 0.00 2.71
1364 1372 1.135373 CAGACGCACCTTCGAGTACAT 60.135 52.381 0.00 0.00 0.00 2.29
1366 1374 0.240411 ACAGACGCACCTTCGAGTAC 59.760 55.000 0.00 0.00 0.00 2.73
1367 1375 0.520404 GACAGACGCACCTTCGAGTA 59.480 55.000 0.00 0.00 0.00 2.59
1368 1376 1.286260 GACAGACGCACCTTCGAGT 59.714 57.895 0.00 0.00 0.00 4.18
1369 1377 1.004277 GTGACAGACGCACCTTCGAG 61.004 60.000 0.00 0.00 0.00 4.04
1370 1378 1.007734 GTGACAGACGCACCTTCGA 60.008 57.895 0.00 0.00 0.00 3.71
1371 1379 3.538841 GTGACAGACGCACCTTCG 58.461 61.111 0.00 0.00 0.00 3.79
1378 1386 0.801067 GGATGTACGGTGACAGACGC 60.801 60.000 0.00 0.00 31.51 5.19
1379 1387 0.524414 TGGATGTACGGTGACAGACG 59.476 55.000 0.00 0.00 31.51 4.18
1381 1389 2.676750 GCAATGGATGTACGGTGACAGA 60.677 50.000 0.00 0.00 31.51 3.41
1382 1390 1.665679 GCAATGGATGTACGGTGACAG 59.334 52.381 0.00 0.00 31.51 3.51
1383 1391 1.677518 GGCAATGGATGTACGGTGACA 60.678 52.381 0.00 0.00 0.00 3.58
1384 1392 1.014352 GGCAATGGATGTACGGTGAC 58.986 55.000 0.00 0.00 0.00 3.67
1386 1394 1.436195 CCGGCAATGGATGTACGGTG 61.436 60.000 0.00 0.00 42.72 4.94
1387 1395 1.153249 CCGGCAATGGATGTACGGT 60.153 57.895 0.00 0.00 42.72 4.83
1388 1396 3.731136 CCGGCAATGGATGTACGG 58.269 61.111 0.00 0.00 42.32 4.02
1389 1397 0.655733 GAACCGGCAATGGATGTACG 59.344 55.000 0.00 0.00 0.00 3.67
1390 1398 1.745232 TGAACCGGCAATGGATGTAC 58.255 50.000 0.00 0.00 0.00 2.90
1392 1400 1.064463 AGATGAACCGGCAATGGATGT 60.064 47.619 0.00 0.00 0.00 3.06
1393 1401 1.683943 AGATGAACCGGCAATGGATG 58.316 50.000 0.00 0.00 0.00 3.51
1394 1402 2.172505 TGTAGATGAACCGGCAATGGAT 59.827 45.455 0.00 0.00 0.00 3.41
1396 1404 2.036958 TGTAGATGAACCGGCAATGG 57.963 50.000 0.00 0.00 0.00 3.16
1397 1405 2.287188 GCATGTAGATGAACCGGCAATG 60.287 50.000 0.00 0.00 0.00 2.82
1400 1408 0.251634 TGCATGTAGATGAACCGGCA 59.748 50.000 0.00 0.00 0.00 5.69
1401 1409 1.597742 ATGCATGTAGATGAACCGGC 58.402 50.000 0.00 0.00 0.00 6.13
1402 1410 8.716646 TTATATAATGCATGTAGATGAACCGG 57.283 34.615 0.00 0.00 0.00 5.28
1430 1438 8.908903 TGTTCTGTAATGGTTTTTGATACACTT 58.091 29.630 0.00 0.00 0.00 3.16
1431 1439 8.458573 TGTTCTGTAATGGTTTTTGATACACT 57.541 30.769 0.00 0.00 0.00 3.55
1432 1440 9.341899 GATGTTCTGTAATGGTTTTTGATACAC 57.658 33.333 0.00 0.00 0.00 2.90
1433 1441 9.072375 TGATGTTCTGTAATGGTTTTTGATACA 57.928 29.630 0.00 0.00 0.00 2.29
1436 1444 8.805175 TCATGATGTTCTGTAATGGTTTTTGAT 58.195 29.630 0.00 0.00 0.00 2.57
1437 1445 8.175925 TCATGATGTTCTGTAATGGTTTTTGA 57.824 30.769 0.00 0.00 0.00 2.69
1438 1446 8.815141 TTCATGATGTTCTGTAATGGTTTTTG 57.185 30.769 0.00 0.00 0.00 2.44
1441 1449 9.685276 TCTATTCATGATGTTCTGTAATGGTTT 57.315 29.630 0.00 0.00 0.00 3.27
1442 1450 9.334947 CTCTATTCATGATGTTCTGTAATGGTT 57.665 33.333 0.00 0.00 0.00 3.67
1443 1451 8.708378 TCTCTATTCATGATGTTCTGTAATGGT 58.292 33.333 0.00 0.00 0.00 3.55
1444 1452 9.551734 TTCTCTATTCATGATGTTCTGTAATGG 57.448 33.333 0.00 0.00 0.00 3.16
1447 1455 9.591792 CACTTCTCTATTCATGATGTTCTGTAA 57.408 33.333 0.00 0.00 0.00 2.41
1448 1456 8.971073 TCACTTCTCTATTCATGATGTTCTGTA 58.029 33.333 0.00 0.00 0.00 2.74
1449 1457 7.763528 GTCACTTCTCTATTCATGATGTTCTGT 59.236 37.037 0.00 0.00 0.00 3.41
1450 1458 7.224362 GGTCACTTCTCTATTCATGATGTTCTG 59.776 40.741 0.00 0.00 0.00 3.02
1451 1459 7.093156 TGGTCACTTCTCTATTCATGATGTTCT 60.093 37.037 0.00 0.00 0.00 3.01
1452 1460 7.044181 TGGTCACTTCTCTATTCATGATGTTC 58.956 38.462 0.00 0.00 0.00 3.18
1453 1461 6.950842 TGGTCACTTCTCTATTCATGATGTT 58.049 36.000 0.00 0.00 0.00 2.71
1454 1462 6.550938 TGGTCACTTCTCTATTCATGATGT 57.449 37.500 0.00 0.00 0.00 3.06
1455 1463 7.854557 TTTGGTCACTTCTCTATTCATGATG 57.145 36.000 0.00 0.00 0.00 3.07
1457 1465 9.958180 TTAATTTGGTCACTTCTCTATTCATGA 57.042 29.630 0.00 0.00 0.00 3.07
1465 1473 9.574516 AACTTGTATTAATTTGGTCACTTCTCT 57.425 29.630 0.00 0.00 0.00 3.10
1466 1474 9.827411 GAACTTGTATTAATTTGGTCACTTCTC 57.173 33.333 0.00 0.00 0.00 2.87
1467 1475 9.349713 TGAACTTGTATTAATTTGGTCACTTCT 57.650 29.630 0.00 0.00 0.00 2.85
1470 1478 8.450964 CGATGAACTTGTATTAATTTGGTCACT 58.549 33.333 0.00 0.00 0.00 3.41
1471 1479 8.234546 ACGATGAACTTGTATTAATTTGGTCAC 58.765 33.333 0.00 0.00 0.00 3.67
1472 1480 8.330466 ACGATGAACTTGTATTAATTTGGTCA 57.670 30.769 0.00 0.00 0.00 4.02
1473 1481 8.447833 TGACGATGAACTTGTATTAATTTGGTC 58.552 33.333 0.00 0.00 0.00 4.02
1474 1482 8.330466 TGACGATGAACTTGTATTAATTTGGT 57.670 30.769 0.00 0.00 0.00 3.67
1484 1492 9.438228 TGGTTTTAATATGACGATGAACTTGTA 57.562 29.630 0.00 0.00 0.00 2.41
1485 1493 8.330466 TGGTTTTAATATGACGATGAACTTGT 57.670 30.769 0.00 0.00 0.00 3.16
1486 1494 9.619316 TTTGGTTTTAATATGACGATGAACTTG 57.381 29.630 0.00 0.00 0.00 3.16
1487 1495 9.840427 CTTTGGTTTTAATATGACGATGAACTT 57.160 29.630 0.00 0.00 0.00 2.66
1488 1496 9.010029 ACTTTGGTTTTAATATGACGATGAACT 57.990 29.630 0.00 0.00 0.00 3.01
1491 1499 9.438228 TGTACTTTGGTTTTAATATGACGATGA 57.562 29.630 0.00 0.00 0.00 2.92
1492 1500 9.702726 CTGTACTTTGGTTTTAATATGACGATG 57.297 33.333 0.00 0.00 0.00 3.84
1493 1501 9.444600 ACTGTACTTTGGTTTTAATATGACGAT 57.555 29.630 0.00 0.00 0.00 3.73
1494 1502 8.836268 ACTGTACTTTGGTTTTAATATGACGA 57.164 30.769 0.00 0.00 0.00 4.20
1501 1509 9.787435 TGATCACTACTGTACTTTGGTTTTAAT 57.213 29.630 0.00 0.00 0.00 1.40
1502 1510 9.616156 TTGATCACTACTGTACTTTGGTTTTAA 57.384 29.630 0.00 0.00 0.00 1.52
1503 1511 9.616156 TTTGATCACTACTGTACTTTGGTTTTA 57.384 29.630 0.00 0.00 0.00 1.52
1504 1512 8.514330 TTTGATCACTACTGTACTTTGGTTTT 57.486 30.769 0.00 0.00 0.00 2.43
1505 1513 8.567948 CATTTGATCACTACTGTACTTTGGTTT 58.432 33.333 0.00 0.00 0.00 3.27
1506 1514 7.719633 ACATTTGATCACTACTGTACTTTGGTT 59.280 33.333 0.00 0.00 0.00 3.67
1507 1515 7.224297 ACATTTGATCACTACTGTACTTTGGT 58.776 34.615 0.00 0.00 0.00 3.67
1508 1516 7.672983 ACATTTGATCACTACTGTACTTTGG 57.327 36.000 0.00 0.00 0.00 3.28
1556 1564 8.887717 GCTCAATGAGAACTATGTATGAACTTT 58.112 33.333 15.38 0.00 0.00 2.66
1557 1565 8.043113 TGCTCAATGAGAACTATGTATGAACTT 58.957 33.333 15.38 0.00 0.00 2.66
1558 1566 7.559486 TGCTCAATGAGAACTATGTATGAACT 58.441 34.615 15.38 0.00 0.00 3.01
1559 1567 7.776933 TGCTCAATGAGAACTATGTATGAAC 57.223 36.000 15.38 0.00 0.00 3.18
1560 1568 7.823799 TGTTGCTCAATGAGAACTATGTATGAA 59.176 33.333 15.38 0.00 0.00 2.57
1561 1569 7.330262 TGTTGCTCAATGAGAACTATGTATGA 58.670 34.615 15.38 0.00 0.00 2.15
1562 1570 7.543947 TGTTGCTCAATGAGAACTATGTATG 57.456 36.000 15.38 0.00 0.00 2.39
1565 1573 9.486497 CTATATGTTGCTCAATGAGAACTATGT 57.514 33.333 15.38 11.16 0.00 2.29
1566 1574 8.441608 GCTATATGTTGCTCAATGAGAACTATG 58.558 37.037 15.38 7.13 0.00 2.23
1567 1575 8.373981 AGCTATATGTTGCTCAATGAGAACTAT 58.626 33.333 15.38 14.37 33.90 2.12
1568 1576 7.730084 AGCTATATGTTGCTCAATGAGAACTA 58.270 34.615 15.38 9.61 33.90 2.24
1569 1577 6.590068 AGCTATATGTTGCTCAATGAGAACT 58.410 36.000 15.38 8.07 33.90 3.01
1570 1578 6.857777 AGCTATATGTTGCTCAATGAGAAC 57.142 37.500 15.38 14.74 33.90 3.01
1622 1630 9.755804 TGCATTGAAATGTTTTACATAGTTTCA 57.244 25.926 5.02 0.00 37.97 2.69
1625 1633 9.539825 TGTTGCATTGAAATGTTTTACATAGTT 57.460 25.926 5.02 0.00 37.97 2.24
1626 1634 9.539825 TTGTTGCATTGAAATGTTTTACATAGT 57.460 25.926 5.02 0.00 37.97 2.12
1627 1635 9.796062 GTTGTTGCATTGAAATGTTTTACATAG 57.204 29.630 5.02 0.00 37.97 2.23
1628 1636 9.317936 TGTTGTTGCATTGAAATGTTTTACATA 57.682 25.926 5.02 0.00 37.97 2.29
1629 1637 8.206325 TGTTGTTGCATTGAAATGTTTTACAT 57.794 26.923 5.02 0.00 41.31 2.29
1630 1638 7.601073 TGTTGTTGCATTGAAATGTTTTACA 57.399 28.000 5.02 2.49 38.65 2.41
1631 1639 8.886816 TTTGTTGTTGCATTGAAATGTTTTAC 57.113 26.923 5.02 0.32 38.65 2.01
1632 1640 9.499585 CATTTGTTGTTGCATTGAAATGTTTTA 57.500 25.926 5.02 0.00 38.65 1.52
1633 1641 8.027771 ACATTTGTTGTTGCATTGAAATGTTTT 58.972 25.926 13.05 0.00 39.71 2.43
1634 1642 7.485277 CACATTTGTTGTTGCATTGAAATGTTT 59.515 29.630 14.91 0.00 40.35 2.83
1635 1643 6.967767 CACATTTGTTGTTGCATTGAAATGTT 59.032 30.769 14.91 4.61 40.35 2.71
1636 1644 6.315642 TCACATTTGTTGTTGCATTGAAATGT 59.684 30.769 13.05 13.05 42.08 2.71
1637 1645 6.716438 TCACATTTGTTGTTGCATTGAAATG 58.284 32.000 0.00 0.00 36.00 2.32
1638 1646 6.922247 TCACATTTGTTGTTGCATTGAAAT 57.078 29.167 0.00 0.00 36.00 2.17
1639 1647 6.537660 TGATCACATTTGTTGTTGCATTGAAA 59.462 30.769 0.00 0.00 36.00 2.69
1640 1648 6.047231 TGATCACATTTGTTGTTGCATTGAA 58.953 32.000 0.00 0.00 36.00 2.69
1641 1649 5.598769 TGATCACATTTGTTGTTGCATTGA 58.401 33.333 0.00 0.00 36.00 2.57
1642 1650 5.692654 TCTGATCACATTTGTTGTTGCATTG 59.307 36.000 0.00 0.00 36.00 2.82
1643 1651 5.845103 TCTGATCACATTTGTTGTTGCATT 58.155 33.333 0.00 0.00 36.00 3.56
1644 1652 5.456548 TCTGATCACATTTGTTGTTGCAT 57.543 34.783 0.00 0.00 36.00 3.96
1645 1653 4.915158 TCTGATCACATTTGTTGTTGCA 57.085 36.364 0.00 0.00 36.00 4.08
1646 1654 5.060077 CGATTCTGATCACATTTGTTGTTGC 59.940 40.000 0.00 0.00 36.00 4.17
1647 1655 5.060077 GCGATTCTGATCACATTTGTTGTTG 59.940 40.000 0.00 0.00 36.00 3.33
1648 1656 5.156355 GCGATTCTGATCACATTTGTTGTT 58.844 37.500 0.00 0.00 36.00 2.83
1649 1657 4.379813 GGCGATTCTGATCACATTTGTTGT 60.380 41.667 0.00 0.00 39.91 3.32
1650 1658 4.100529 GGCGATTCTGATCACATTTGTTG 58.899 43.478 0.00 0.00 32.33 3.33
1651 1659 3.758023 TGGCGATTCTGATCACATTTGTT 59.242 39.130 0.00 0.00 32.33 2.83
1652 1660 3.127548 GTGGCGATTCTGATCACATTTGT 59.872 43.478 0.00 0.00 32.33 2.83
1653 1661 3.376234 AGTGGCGATTCTGATCACATTTG 59.624 43.478 0.00 0.00 32.33 2.32
1654 1662 3.614092 AGTGGCGATTCTGATCACATTT 58.386 40.909 0.00 0.00 32.33 2.32
1655 1663 3.272574 AGTGGCGATTCTGATCACATT 57.727 42.857 0.00 0.00 32.33 2.71
1656 1664 2.996249 AGTGGCGATTCTGATCACAT 57.004 45.000 0.00 0.00 32.33 3.21
1657 1665 3.430790 CCTTAGTGGCGATTCTGATCACA 60.431 47.826 0.00 0.00 32.33 3.58
1658 1666 3.126831 CCTTAGTGGCGATTCTGATCAC 58.873 50.000 0.00 0.00 32.33 3.06
1659 1667 2.766263 ACCTTAGTGGCGATTCTGATCA 59.234 45.455 0.00 0.00 40.22 2.92
1660 1668 3.460857 ACCTTAGTGGCGATTCTGATC 57.539 47.619 0.00 0.00 40.22 2.92
1661 1669 4.161565 TGTTACCTTAGTGGCGATTCTGAT 59.838 41.667 0.00 0.00 40.22 2.90
1662 1670 3.512329 TGTTACCTTAGTGGCGATTCTGA 59.488 43.478 0.00 0.00 40.22 3.27
1663 1671 3.857052 TGTTACCTTAGTGGCGATTCTG 58.143 45.455 0.00 0.00 40.22 3.02
1664 1672 4.546829 TTGTTACCTTAGTGGCGATTCT 57.453 40.909 0.00 0.00 40.22 2.40
1665 1673 5.353123 TCAATTGTTACCTTAGTGGCGATTC 59.647 40.000 5.13 0.00 40.22 2.52
1666 1674 5.250200 TCAATTGTTACCTTAGTGGCGATT 58.750 37.500 5.13 0.00 40.22 3.34
1667 1675 4.839121 TCAATTGTTACCTTAGTGGCGAT 58.161 39.130 5.13 0.00 40.22 4.58
1668 1676 4.274602 TCAATTGTTACCTTAGTGGCGA 57.725 40.909 5.13 0.00 40.22 5.54
1669 1677 4.035208 GGATCAATTGTTACCTTAGTGGCG 59.965 45.833 5.13 0.00 40.22 5.69
1670 1678 4.947388 TGGATCAATTGTTACCTTAGTGGC 59.053 41.667 5.13 0.00 40.22 5.01
1671 1679 6.403200 CGTTGGATCAATTGTTACCTTAGTGG 60.403 42.308 5.13 0.00 42.93 4.00
1672 1680 6.403200 CCGTTGGATCAATTGTTACCTTAGTG 60.403 42.308 5.13 0.00 0.00 2.74
1673 1681 5.646360 CCGTTGGATCAATTGTTACCTTAGT 59.354 40.000 5.13 0.00 0.00 2.24
1674 1682 5.448632 GCCGTTGGATCAATTGTTACCTTAG 60.449 44.000 5.13 3.87 0.00 2.18
1675 1683 4.396790 GCCGTTGGATCAATTGTTACCTTA 59.603 41.667 5.13 0.00 0.00 2.69
1676 1684 3.192633 GCCGTTGGATCAATTGTTACCTT 59.807 43.478 5.13 0.00 0.00 3.50
1677 1685 2.752903 GCCGTTGGATCAATTGTTACCT 59.247 45.455 5.13 0.00 0.00 3.08
1678 1686 2.490115 TGCCGTTGGATCAATTGTTACC 59.510 45.455 5.13 8.12 0.00 2.85
1679 1687 3.840890 TGCCGTTGGATCAATTGTTAC 57.159 42.857 5.13 0.00 0.00 2.50
1680 1688 6.319911 TCATTATGCCGTTGGATCAATTGTTA 59.680 34.615 5.13 0.00 0.00 2.41
1681 1689 5.126869 TCATTATGCCGTTGGATCAATTGTT 59.873 36.000 5.13 0.00 0.00 2.83
1682 1690 4.644234 TCATTATGCCGTTGGATCAATTGT 59.356 37.500 5.13 0.00 0.00 2.71
1683 1691 5.185668 TCATTATGCCGTTGGATCAATTG 57.814 39.130 0.00 0.00 0.00 2.32
1684 1692 6.071952 GGTATCATTATGCCGTTGGATCAATT 60.072 38.462 0.00 0.00 0.00 2.32
1685 1693 5.415701 GGTATCATTATGCCGTTGGATCAAT 59.584 40.000 0.00 0.00 0.00 2.57
1686 1694 4.759693 GGTATCATTATGCCGTTGGATCAA 59.240 41.667 0.00 0.00 0.00 2.57
1687 1695 4.202409 TGGTATCATTATGCCGTTGGATCA 60.202 41.667 0.00 0.00 40.57 2.92
1688 1696 4.323417 TGGTATCATTATGCCGTTGGATC 58.677 43.478 0.00 0.00 40.57 3.36
1689 1697 4.365514 TGGTATCATTATGCCGTTGGAT 57.634 40.909 0.00 0.00 40.57 3.41
1690 1698 3.847671 TGGTATCATTATGCCGTTGGA 57.152 42.857 0.00 0.00 40.57 3.53
1691 1699 3.304659 GCTTGGTATCATTATGCCGTTGG 60.305 47.826 0.00 0.00 40.57 3.77
1692 1700 3.606846 CGCTTGGTATCATTATGCCGTTG 60.607 47.826 0.00 0.00 40.57 4.10
1693 1701 2.548057 CGCTTGGTATCATTATGCCGTT 59.452 45.455 0.00 0.00 40.57 4.44
1694 1702 2.143122 CGCTTGGTATCATTATGCCGT 58.857 47.619 0.00 0.00 40.57 5.68
1695 1703 2.143122 ACGCTTGGTATCATTATGCCG 58.857 47.619 0.00 0.00 40.57 5.69
1696 1704 3.058914 GTGACGCTTGGTATCATTATGCC 60.059 47.826 0.00 0.00 38.30 4.40
1697 1705 3.809832 AGTGACGCTTGGTATCATTATGC 59.190 43.478 0.00 0.00 0.00 3.14
1698 1706 6.868339 TGATAGTGACGCTTGGTATCATTATG 59.132 38.462 0.00 0.00 28.68 1.90
1699 1707 6.993079 TGATAGTGACGCTTGGTATCATTAT 58.007 36.000 0.00 0.00 30.51 1.28
1700 1708 6.399639 TGATAGTGACGCTTGGTATCATTA 57.600 37.500 0.00 0.00 0.00 1.90
1701 1709 5.276461 TGATAGTGACGCTTGGTATCATT 57.724 39.130 0.00 0.00 0.00 2.57
1702 1710 4.937201 TGATAGTGACGCTTGGTATCAT 57.063 40.909 0.00 0.00 0.00 2.45
1703 1711 4.729227 TTGATAGTGACGCTTGGTATCA 57.271 40.909 0.00 0.00 0.00 2.15
1704 1712 4.449068 CCATTGATAGTGACGCTTGGTATC 59.551 45.833 0.00 0.00 0.00 2.24
1705 1713 4.380531 CCATTGATAGTGACGCTTGGTAT 58.619 43.478 0.00 0.00 0.00 2.73
1706 1714 3.792401 CCATTGATAGTGACGCTTGGTA 58.208 45.455 0.00 0.00 0.00 3.25
1707 1715 2.632377 CCATTGATAGTGACGCTTGGT 58.368 47.619 0.00 0.00 0.00 3.67
1708 1716 1.331756 GCCATTGATAGTGACGCTTGG 59.668 52.381 0.00 0.00 0.00 3.61
1709 1717 2.009051 TGCCATTGATAGTGACGCTTG 58.991 47.619 0.00 0.00 0.00 4.01
1710 1718 2.401583 TGCCATTGATAGTGACGCTT 57.598 45.000 0.00 0.00 0.00 4.68
1711 1719 2.627515 ATGCCATTGATAGTGACGCT 57.372 45.000 0.00 0.00 0.00 5.07
1712 1720 5.362556 AAATATGCCATTGATAGTGACGC 57.637 39.130 0.00 0.00 0.00 5.19
1713 1721 7.194607 AGAAAATATGCCATTGATAGTGACG 57.805 36.000 0.00 0.00 0.00 4.35
1736 1744 7.993821 TGTGCTCGAAGATTAGAAAGATTAG 57.006 36.000 0.00 0.00 33.89 1.73
1738 1746 7.678218 GCAATGTGCTCGAAGATTAGAAAGATT 60.678 37.037 0.00 0.00 40.96 2.40
1739 1747 6.238320 GCAATGTGCTCGAAGATTAGAAAGAT 60.238 38.462 0.00 0.00 40.96 2.40
1740 1748 5.063944 GCAATGTGCTCGAAGATTAGAAAGA 59.936 40.000 0.00 0.00 40.96 2.52
1741 1749 5.163824 TGCAATGTGCTCGAAGATTAGAAAG 60.164 40.000 1.43 0.00 45.31 2.62
1742 1750 4.694982 TGCAATGTGCTCGAAGATTAGAAA 59.305 37.500 1.43 0.00 45.31 2.52
1744 1752 3.860641 TGCAATGTGCTCGAAGATTAGA 58.139 40.909 1.43 0.00 45.31 2.10
1745 1753 4.319333 GGATGCAATGTGCTCGAAGATTAG 60.319 45.833 0.00 0.00 45.31 1.73
1747 1755 2.357009 GGATGCAATGTGCTCGAAGATT 59.643 45.455 0.00 0.00 45.31 2.40
1748 1756 1.945394 GGATGCAATGTGCTCGAAGAT 59.055 47.619 0.00 0.00 45.31 2.40
1749 1757 1.338960 TGGATGCAATGTGCTCGAAGA 60.339 47.619 0.00 0.00 45.31 2.87
1750 1758 1.089112 TGGATGCAATGTGCTCGAAG 58.911 50.000 0.00 0.00 45.31 3.79
1751 1759 1.672363 GATGGATGCAATGTGCTCGAA 59.328 47.619 0.00 0.00 45.31 3.71
1753 1761 1.306148 AGATGGATGCAATGTGCTCG 58.694 50.000 0.00 0.00 45.31 5.03
1754 1762 2.686405 TCAAGATGGATGCAATGTGCTC 59.314 45.455 0.00 0.00 45.31 4.26
1755 1763 2.730382 TCAAGATGGATGCAATGTGCT 58.270 42.857 0.00 0.00 45.31 4.40
1756 1764 3.318275 AGATCAAGATGGATGCAATGTGC 59.682 43.478 0.00 0.00 45.29 4.57
1757 1765 5.515797 AAGATCAAGATGGATGCAATGTG 57.484 39.130 0.00 0.00 0.00 3.21
1758 1766 7.002276 TCATAAGATCAAGATGGATGCAATGT 58.998 34.615 0.00 0.00 0.00 2.71
1759 1767 7.448748 TCATAAGATCAAGATGGATGCAATG 57.551 36.000 0.00 0.00 0.00 2.82
1776 1784 6.823182 ACAATTCCACGACAATGATCATAAGA 59.177 34.615 9.04 0.00 0.00 2.10
1778 1786 6.597280 TGACAATTCCACGACAATGATCATAA 59.403 34.615 9.04 0.00 0.00 1.90
1779 1787 6.037062 GTGACAATTCCACGACAATGATCATA 59.963 38.462 9.04 0.00 0.00 2.15
1780 1788 4.943093 TGACAATTCCACGACAATGATCAT 59.057 37.500 1.18 1.18 0.00 2.45
1781 1789 4.154015 GTGACAATTCCACGACAATGATCA 59.846 41.667 0.00 0.00 0.00 2.92
1783 1791 4.685169 GTGACAATTCCACGACAATGAT 57.315 40.909 0.00 0.00 0.00 2.45
1889 2061 5.239525 GTCTAAATCCTTGTCTTGTGTTGCT 59.760 40.000 0.00 0.00 0.00 3.91
1966 2256 4.021981 CCGTGATCATAATGAGACCTAGCA 60.022 45.833 0.00 0.00 0.00 3.49
2078 2377 1.453197 CATGTAACCCGCCCCTTCC 60.453 63.158 0.00 0.00 0.00 3.46
2200 2499 3.378512 AGCCAGATGGTAAGTCAGATCA 58.621 45.455 0.00 0.00 37.57 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.