Multiple sequence alignment - TraesCS2D01G033500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G033500 chr2D 100.000 2291 0 0 2544 4834 12921782 12919492 0.000000e+00 4231.0
1 TraesCS2D01G033500 chr2D 100.000 1445 0 0 784 2228 12923542 12922098 0.000000e+00 2669.0
2 TraesCS2D01G033500 chr2D 100.000 420 0 0 1 420 12924325 12923906 0.000000e+00 776.0
3 TraesCS2D01G033500 chr2D 82.627 472 68 11 4309 4767 429043044 429043514 5.830000e-109 405.0
4 TraesCS2D01G033500 chr2D 94.000 50 1 1 1507 1554 612720137 612720186 1.870000e-09 75.0
5 TraesCS2D01G033500 chr2D 90.196 51 3 2 371 420 12923508 12923459 1.120000e-06 65.8
6 TraesCS2D01G033500 chr2D 90.196 51 3 2 818 867 12923955 12923906 1.120000e-06 65.8
7 TraesCS2D01G033500 chr2A 96.698 1605 27 9 2544 4124 15032132 15030530 0.000000e+00 2647.0
8 TraesCS2D01G033500 chr2A 95.549 674 25 4 1555 2228 15032845 15032177 0.000000e+00 1074.0
9 TraesCS2D01G033500 chr2A 96.429 616 13 2 938 1553 15033485 15032879 0.000000e+00 1007.0
10 TraesCS2D01G033500 chr2A 95.692 325 12 2 65 388 15034559 15034236 5.540000e-144 521.0
11 TraesCS2D01G033500 chr2A 82.487 571 64 18 4123 4679 15030505 15029957 7.330000e-128 468.0
12 TraesCS2D01G033500 chr2A 89.109 101 6 4 818 915 15034233 15034135 2.360000e-23 121.0
13 TraesCS2D01G033500 chr2A 90.909 88 7 1 1555 1642 703708346 703708260 3.060000e-22 117.0
14 TraesCS2D01G033500 chr2A 93.151 73 3 2 350 420 15034081 15034009 6.620000e-19 106.0
15 TraesCS2D01G033500 chr2A 95.833 48 1 1 822 868 15034055 15034008 5.190000e-10 76.8
16 TraesCS2D01G033500 chr2A 97.059 34 0 1 4137 4170 750624992 750625024 6.760000e-04 56.5
17 TraesCS2D01G033500 chr6D 81.837 479 67 17 4309 4772 454064141 454064614 7.590000e-103 385.0
18 TraesCS2D01G033500 chr6D 90.000 90 8 1 1555 1644 409773928 409773840 1.100000e-21 115.0
19 TraesCS2D01G033500 chr6D 90.000 60 6 0 251 310 473350026 473350085 1.440000e-10 78.7
20 TraesCS2D01G033500 chr4D 81.092 476 79 7 4308 4772 354114868 354115343 2.130000e-98 370.0
21 TraesCS2D01G033500 chr7D 81.211 479 70 17 4309 4772 475155396 475154923 7.640000e-98 368.0
22 TraesCS2D01G033500 chr7D 89.130 92 10 0 1555 1646 397554999 397554908 1.100000e-21 115.0
23 TraesCS2D01G033500 chr7D 94.118 51 3 0 239 289 70695258 70695308 1.440000e-10 78.7
24 TraesCS2D01G033500 chr3D 80.943 488 70 20 4305 4775 24569714 24569233 9.890000e-97 364.0
25 TraesCS2D01G033500 chr2B 80.842 475 76 11 4308 4772 641652428 641651959 4.600000e-95 359.0
26 TraesCS2D01G033500 chr2B 95.000 40 2 0 4122 4161 753954220 753954259 4.040000e-06 63.9
27 TraesCS2D01G033500 chr5D 80.713 477 77 11 4309 4772 556094168 556093694 1.650000e-94 357.0
28 TraesCS2D01G033500 chr5D 89.247 93 10 0 1555 1647 59947765 59947673 3.060000e-22 117.0
29 TraesCS2D01G033500 chr5D 92.000 50 2 1 1507 1554 535645904 535645953 8.680000e-08 69.4
30 TraesCS2D01G033500 chr5B 80.793 479 71 16 4309 4772 589664365 589664837 5.950000e-94 355.0
31 TraesCS2D01G033500 chr3A 80.882 476 69 19 4309 4768 644817526 644817057 5.950000e-94 355.0
32 TraesCS2D01G033500 chr3A 91.071 56 2 2 1502 1554 443818693 443818748 6.710000e-09 73.1
33 TraesCS2D01G033500 chr3A 100.000 28 0 0 3702 3729 121480428 121480455 9.000000e-03 52.8
34 TraesCS2D01G033500 chr7B 92.045 88 6 1 1555 1642 129537799 129537713 6.570000e-24 122.0
35 TraesCS2D01G033500 chr7B 92.000 50 2 1 1507 1554 514511414 514511463 8.680000e-08 69.4
36 TraesCS2D01G033500 chr7B 97.500 40 1 0 4123 4162 672525176 672525137 8.680000e-08 69.4
37 TraesCS2D01G033500 chr7B 94.595 37 1 1 4137 4173 727607013 727607048 6.760000e-04 56.5
38 TraesCS2D01G033500 chr6B 92.857 84 5 1 1555 1638 650598622 650598540 2.360000e-23 121.0
39 TraesCS2D01G033500 chr7A 91.860 86 5 2 1555 1639 134067398 134067314 8.500000e-23 119.0
40 TraesCS2D01G033500 chr7A 89.286 56 4 2 4108 4161 185638742 185638797 8.680000e-08 69.4
41 TraesCS2D01G033500 chr7A 97.059 34 0 1 4135 4168 78667799 78667767 6.760000e-04 56.5
42 TraesCS2D01G033500 chr1B 91.860 86 6 1 1555 1639 376620818 376620903 8.500000e-23 119.0
43 TraesCS2D01G033500 chr1B 87.719 57 7 0 3704 3760 18676825 18676769 3.120000e-07 67.6
44 TraesCS2D01G033500 chr1B 85.965 57 8 0 3704 3760 18570652 18570596 1.450000e-05 62.1
45 TraesCS2D01G033500 chr4B 89.474 76 3 3 236 310 130313173 130313102 1.850000e-14 91.6
46 TraesCS2D01G033500 chr4B 90.909 55 0 3 1505 1554 28618454 28618508 8.680000e-08 69.4
47 TraesCS2D01G033500 chr3B 100.000 40 0 0 4123 4162 13420055 13420094 1.870000e-09 75.0
48 TraesCS2D01G033500 chr3B 83.051 59 10 0 3702 3760 160367097 160367039 2.000000e-03 54.7
49 TraesCS2D01G033500 chr1A 92.308 52 2 1 1505 1554 227173128 227173077 6.710000e-09 73.1
50 TraesCS2D01G033500 chr1A 88.235 51 6 0 3704 3754 14469059 14469109 1.450000e-05 62.1
51 TraesCS2D01G033500 chr4A 92.000 50 2 1 1507 1554 374626845 374626796 8.680000e-08 69.4
52 TraesCS2D01G033500 chr4A 92.000 50 2 2 1507 1554 677936816 677936767 8.680000e-08 69.4
53 TraesCS2D01G033500 chr6A 94.737 38 2 0 4127 4164 52116678 52116715 5.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G033500 chr2D 12919492 12924325 4833 True 1561.52 4231 96.0784 1 4834 5 chr2D.!!$R1 4833
1 TraesCS2D01G033500 chr2A 15029957 15034559 4602 True 752.60 2647 93.1185 65 4679 8 chr2A.!!$R2 4614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 969 0.178858 TCTATCCCAACACCCCACCA 60.179 55.0 0.00 0.0 0.00 4.17 F
1407 2057 0.179004 TTGTTGTCGAGGGTGCCAAT 60.179 50.0 0.00 0.0 0.00 3.16 F
2168 2850 0.031314 ATGCTAGGATGAGCGTCGTG 59.969 55.0 0.00 0.0 45.99 4.35 F
3606 4298 0.880718 TTTGTACGACGGCATGTGCA 60.881 50.0 7.36 0.0 44.36 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2758 0.586319 TCGAAACCAAGAAAGCTGCG 59.414 50.000 0.00 0.0 0.00 5.18 R
3359 4051 1.071699 CCGTTCCTCAAGACCCAGAAA 59.928 52.381 0.00 0.0 0.00 2.52 R
3746 4438 1.153549 CAGCCAGACGTAGCCCTTC 60.154 63.158 0.00 0.0 0.00 3.46 R
4633 5379 0.179129 TTCGGTCGGCGATTACCTTC 60.179 55.000 14.79 0.0 33.34 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.606631 CTATTTAGGAATAGAAGATATGTGGCC 57.393 37.037 0.00 0.00 44.95 5.36
33 34 4.917906 AGGAATAGAAGATATGTGGCCC 57.082 45.455 0.00 0.00 0.00 5.80
34 35 3.589288 AGGAATAGAAGATATGTGGCCCC 59.411 47.826 0.00 0.00 0.00 5.80
35 36 3.589288 GGAATAGAAGATATGTGGCCCCT 59.411 47.826 0.00 0.00 0.00 4.79
36 37 4.566488 GGAATAGAAGATATGTGGCCCCTG 60.566 50.000 0.00 0.00 0.00 4.45
37 38 2.196742 AGAAGATATGTGGCCCCTGA 57.803 50.000 0.00 0.00 0.00 3.86
38 39 2.053244 AGAAGATATGTGGCCCCTGAG 58.947 52.381 0.00 0.00 0.00 3.35
39 40 2.050144 GAAGATATGTGGCCCCTGAGA 58.950 52.381 0.00 0.00 0.00 3.27
40 41 1.727062 AGATATGTGGCCCCTGAGAG 58.273 55.000 0.00 0.00 0.00 3.20
41 42 1.221523 AGATATGTGGCCCCTGAGAGA 59.778 52.381 0.00 0.00 0.00 3.10
42 43 2.158035 AGATATGTGGCCCCTGAGAGAT 60.158 50.000 0.00 0.00 0.00 2.75
43 44 3.078153 AGATATGTGGCCCCTGAGAGATA 59.922 47.826 0.00 0.00 0.00 1.98
44 45 2.429933 ATGTGGCCCCTGAGAGATAT 57.570 50.000 0.00 0.00 0.00 1.63
45 46 2.196742 TGTGGCCCCTGAGAGATATT 57.803 50.000 0.00 0.00 0.00 1.28
46 47 1.770658 TGTGGCCCCTGAGAGATATTG 59.229 52.381 0.00 0.00 0.00 1.90
47 48 2.050144 GTGGCCCCTGAGAGATATTGA 58.950 52.381 0.00 0.00 0.00 2.57
48 49 2.050144 TGGCCCCTGAGAGATATTGAC 58.950 52.381 0.00 0.00 0.00 3.18
49 50 1.349357 GGCCCCTGAGAGATATTGACC 59.651 57.143 0.00 0.00 0.00 4.02
50 51 2.050144 GCCCCTGAGAGATATTGACCA 58.950 52.381 0.00 0.00 0.00 4.02
51 52 2.641815 GCCCCTGAGAGATATTGACCAT 59.358 50.000 0.00 0.00 0.00 3.55
52 53 3.558746 GCCCCTGAGAGATATTGACCATG 60.559 52.174 0.00 0.00 0.00 3.66
53 54 3.906218 CCCCTGAGAGATATTGACCATGA 59.094 47.826 0.00 0.00 0.00 3.07
54 55 4.020396 CCCCTGAGAGATATTGACCATGAG 60.020 50.000 0.00 0.00 0.00 2.90
55 56 4.837298 CCCTGAGAGATATTGACCATGAGA 59.163 45.833 0.00 0.00 0.00 3.27
56 57 5.047164 CCCTGAGAGATATTGACCATGAGAG 60.047 48.000 0.00 0.00 0.00 3.20
57 58 5.539574 CCTGAGAGATATTGACCATGAGAGT 59.460 44.000 0.00 0.00 0.00 3.24
58 59 6.718912 CCTGAGAGATATTGACCATGAGAGTA 59.281 42.308 0.00 0.00 0.00 2.59
59 60 7.396907 CCTGAGAGATATTGACCATGAGAGTAT 59.603 40.741 0.00 0.00 0.00 2.12
60 61 8.718158 TGAGAGATATTGACCATGAGAGTATT 57.282 34.615 0.00 0.00 0.00 1.89
61 62 9.813826 TGAGAGATATTGACCATGAGAGTATTA 57.186 33.333 0.00 0.00 0.00 0.98
255 256 0.324943 ACCACATGGCAGGTGTAGTC 59.675 55.000 27.95 0.00 39.32 2.59
289 290 7.433708 TGTTGATGAGTATTTGAACGATGTT 57.566 32.000 0.00 0.00 0.00 2.71
310 311 3.485463 TGGAGGCGAAAGAAGAAAAGA 57.515 42.857 0.00 0.00 0.00 2.52
413 434 4.336581 GGCTTGGCCGTTTTCAAC 57.663 55.556 0.00 0.00 39.62 3.18
414 435 1.439644 GGCTTGGCCGTTTTCAACA 59.560 52.632 0.00 0.00 39.62 3.33
415 436 0.179097 GGCTTGGCCGTTTTCAACAA 60.179 50.000 0.00 0.00 39.62 2.83
416 437 1.540146 GGCTTGGCCGTTTTCAACAAT 60.540 47.619 0.00 0.00 39.62 2.71
417 438 2.209273 GCTTGGCCGTTTTCAACAATT 58.791 42.857 0.00 0.00 0.00 2.32
418 439 3.385577 GCTTGGCCGTTTTCAACAATTA 58.614 40.909 0.00 0.00 0.00 1.40
419 440 3.993736 GCTTGGCCGTTTTCAACAATTAT 59.006 39.130 0.00 0.00 0.00 1.28
860 881 4.336581 GGCTTGGCCGTTTTCAAC 57.663 55.556 0.00 0.00 39.62 3.18
907 928 7.428282 TTTACTGTGCTCTCTCTATCTATCG 57.572 40.000 0.00 0.00 0.00 2.92
908 929 4.323417 ACTGTGCTCTCTCTATCTATCGG 58.677 47.826 0.00 0.00 0.00 4.18
915 956 5.989777 GCTCTCTCTATCTATCGGTCTATCC 59.010 48.000 0.00 0.00 0.00 2.59
917 958 5.965091 TCTCTCTATCTATCGGTCTATCCCA 59.035 44.000 0.00 0.00 0.00 4.37
925 966 1.268992 CGGTCTATCCCAACACCCCA 61.269 60.000 0.00 0.00 0.00 4.96
928 969 0.178858 TCTATCCCAACACCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
930 971 1.502527 TATCCCAACACCCCACCACC 61.503 60.000 0.00 0.00 0.00 4.61
931 972 3.826822 CCCAACACCCCACCACCA 61.827 66.667 0.00 0.00 0.00 4.17
932 973 2.520741 CCAACACCCCACCACCAC 60.521 66.667 0.00 0.00 0.00 4.16
934 975 3.828023 AACACCCCACCACCACCC 61.828 66.667 0.00 0.00 0.00 4.61
935 976 4.855230 ACACCCCACCACCACCCT 62.855 66.667 0.00 0.00 0.00 4.34
936 977 3.966543 CACCCCACCACCACCCTC 61.967 72.222 0.00 0.00 0.00 4.30
974 1624 3.452755 CAGGATATGCACGTCCAGTAA 57.547 47.619 18.52 0.00 36.96 2.24
975 1625 3.384668 CAGGATATGCACGTCCAGTAAG 58.615 50.000 18.52 2.89 36.96 2.34
976 1626 2.135933 GGATATGCACGTCCAGTAAGC 58.864 52.381 13.01 0.00 34.57 3.09
977 1627 2.483013 GGATATGCACGTCCAGTAAGCA 60.483 50.000 13.01 0.00 36.41 3.91
978 1628 2.293677 TATGCACGTCCAGTAAGCAG 57.706 50.000 0.00 0.00 35.61 4.24
979 1629 1.021390 ATGCACGTCCAGTAAGCAGC 61.021 55.000 0.00 0.00 35.61 5.25
980 1630 1.667830 GCACGTCCAGTAAGCAGCA 60.668 57.895 0.00 0.00 0.00 4.41
981 1631 1.630244 GCACGTCCAGTAAGCAGCAG 61.630 60.000 0.00 0.00 0.00 4.24
991 1641 0.324943 TAAGCAGCAGAACCACCTCC 59.675 55.000 0.00 0.00 0.00 4.30
1024 1674 3.997681 GCTGTCCTCCAAGTCTTCTTTAC 59.002 47.826 0.00 0.00 0.00 2.01
1025 1675 4.503296 GCTGTCCTCCAAGTCTTCTTTACA 60.503 45.833 0.00 0.00 0.00 2.41
1050 1700 2.271800 GCTCTAATCCTTGTGGTCACG 58.728 52.381 0.00 0.00 34.23 4.35
1097 1747 2.954753 CTTCACGTGGCCTCGTTGC 61.955 63.158 28.96 0.00 42.27 4.17
1132 1782 1.217779 GCACTGGAGGACTCTCTGC 59.782 63.158 0.00 0.89 39.86 4.26
1146 1796 2.297880 CTCTCTGCTGATGATGGAGAGG 59.702 54.545 11.25 1.07 45.82 3.69
1407 2057 0.179004 TTGTTGTCGAGGGTGCCAAT 60.179 50.000 0.00 0.00 0.00 3.16
1411 2061 0.605319 TGTCGAGGGTGCCAATTGTC 60.605 55.000 4.43 0.00 0.00 3.18
1435 2085 2.180017 CGCCAAATGCTGTGCCTC 59.820 61.111 0.00 0.00 38.05 4.70
1501 2151 4.965119 AATCAAGGAAAAGTATGCGGTC 57.035 40.909 0.00 0.00 0.00 4.79
1524 2174 7.070821 GGTCAGTATACTTCCTCCATTCCTAAA 59.929 40.741 1.56 0.00 0.00 1.85
1568 2250 7.492524 TCAATATGGACAGAGTGTAGATTCAC 58.507 38.462 0.00 0.00 38.46 3.18
1579 2261 5.815581 AGTGTAGATTCACCCATTTTGCTA 58.184 37.500 0.00 0.00 38.91 3.49
1583 2265 5.587388 AGATTCACCCATTTTGCTATGTG 57.413 39.130 0.00 0.00 0.00 3.21
1593 2275 6.127647 CCCATTTTGCTATGTGTGTAGTTCAT 60.128 38.462 0.00 0.00 0.00 2.57
1666 2348 7.259882 TGCATTTGATGTTTGGATTCATCTAC 58.740 34.615 0.00 0.00 40.46 2.59
1706 2388 7.661536 AAGTTACTATCATCAGTGGCTAGAA 57.338 36.000 0.00 0.00 0.00 2.10
1712 2394 3.023832 TCATCAGTGGCTAGAATGTCGA 58.976 45.455 0.00 0.00 0.00 4.20
1716 2398 2.359214 CAGTGGCTAGAATGTCGAGCTA 59.641 50.000 9.70 1.81 43.36 3.32
1718 2400 3.005261 AGTGGCTAGAATGTCGAGCTATG 59.995 47.826 9.70 0.00 43.36 2.23
1719 2401 3.004839 GTGGCTAGAATGTCGAGCTATGA 59.995 47.826 9.70 0.00 43.36 2.15
1720 2402 3.004839 TGGCTAGAATGTCGAGCTATGAC 59.995 47.826 10.83 10.83 43.36 3.06
1749 2431 1.378882 CCGCATTGATGTCCCACCTG 61.379 60.000 0.00 0.00 0.00 4.00
1805 2487 5.946298 TCTTCACGTAGTTATGTGTAGTGG 58.054 41.667 14.05 3.59 41.61 4.00
1811 2493 6.525628 CACGTAGTTATGTGTAGTGGTTAGTG 59.474 42.308 0.00 0.00 41.61 2.74
1855 2537 2.426024 TCGTTAATGAAGTCGGAGAGGG 59.574 50.000 0.00 0.00 36.95 4.30
2112 2794 5.276270 GTTTCGAACACTTAAACTTTCCCC 58.724 41.667 0.00 0.00 31.83 4.81
2123 2805 7.553044 CACTTAAACTTTCCCCAAGGTAGATAG 59.447 40.741 0.00 0.00 36.72 2.08
2168 2850 0.031314 ATGCTAGGATGAGCGTCGTG 59.969 55.000 0.00 0.00 45.99 4.35
2777 3466 5.955488 TCACTATCAGAAACTTCGGAAGAG 58.045 41.667 23.74 10.40 43.69 2.85
2801 3490 8.620533 AGAATTTTGTCTCGACTTTTGAAAAG 57.379 30.769 15.59 15.59 0.00 2.27
2813 3502 6.797033 CGACTTTTGAAAAGTACATCATGGAC 59.203 38.462 21.90 6.11 0.00 4.02
3058 3750 9.073368 GTGTCCGCTAAACATATATACATACAG 57.927 37.037 0.00 0.00 0.00 2.74
3074 3766 6.786967 ACATACAGTAGGTAACCAAGGTAG 57.213 41.667 0.00 0.00 35.14 3.18
3133 3825 2.733637 AGGACCCTAATGCTCCCCTATA 59.266 50.000 0.00 0.00 0.00 1.31
3134 3826 3.108376 GGACCCTAATGCTCCCCTATAG 58.892 54.545 0.00 0.00 0.00 1.31
3201 3893 3.947196 GGTTAATGATCATGTGTGCTGGA 59.053 43.478 9.46 0.00 0.00 3.86
3349 4041 2.407616 CACGAGCGGCGAGATGTA 59.592 61.111 12.98 0.00 44.57 2.29
3359 4051 2.610479 CGGCGAGATGTACAATGCCTAT 60.610 50.000 21.23 0.00 40.31 2.57
3454 4146 1.072331 GAGAGGGAAACTGCAGGAACA 59.928 52.381 19.93 0.00 0.00 3.18
3606 4298 0.880718 TTTGTACGACGGCATGTGCA 60.881 50.000 7.36 0.00 44.36 4.57
3679 4371 3.199891 GGCCATTGTCGGGTACGC 61.200 66.667 0.00 0.00 40.69 4.42
3746 4438 1.377333 GGGCGAGAAGTGGGGAAAG 60.377 63.158 0.00 0.00 0.00 2.62
4133 4865 3.418047 CCTCCGTTCCAACTAAAACCAT 58.582 45.455 0.00 0.00 0.00 3.55
4135 4867 3.150767 TCCGTTCCAACTAAAACCATGG 58.849 45.455 11.19 11.19 0.00 3.66
4140 4872 3.571590 TCCAACTAAAACCATGGCACTT 58.428 40.909 13.04 5.19 32.87 3.16
4151 4883 3.056891 ACCATGGCACTTATTTTGGAACG 60.057 43.478 13.04 0.00 0.00 3.95
4155 4887 2.163613 GGCACTTATTTTGGAACGGAGG 59.836 50.000 0.00 0.00 0.00 4.30
4165 4897 1.918262 TGGAACGGAGGGAGTACTAGA 59.082 52.381 0.00 0.00 0.00 2.43
4202 4934 9.495572 TTCAAACAACAATTGTACTTTCCTTTT 57.504 25.926 12.39 0.54 44.59 2.27
4203 4935 9.495572 TCAAACAACAATTGTACTTTCCTTTTT 57.504 25.926 12.39 0.00 44.59 1.94
4251 4983 9.606631 TTGTTAATTAACTTTGAAAATGCAGGT 57.393 25.926 24.81 0.00 37.12 4.00
4306 5038 6.665992 ACAATTTCCCCCTTCTTAAACTTC 57.334 37.500 0.00 0.00 0.00 3.01
4308 5040 5.616975 ATTTCCCCCTTCTTAAACTTCCT 57.383 39.130 0.00 0.00 0.00 3.36
4339 5072 6.586463 TGCGATGATAACTTTCGATCTATTCC 59.414 38.462 0.00 0.00 0.00 3.01
4352 5085 5.046529 CGATCTATTCCTCAACTGTCAAGG 58.953 45.833 2.78 2.78 0.00 3.61
4354 5087 5.825593 TCTATTCCTCAACTGTCAAGGTT 57.174 39.130 7.93 2.00 0.00 3.50
4359 5101 3.452990 TCCTCAACTGTCAAGGTTGTACA 59.547 43.478 0.00 0.00 42.97 2.90
4361 5103 4.638421 CCTCAACTGTCAAGGTTGTACAAA 59.362 41.667 10.51 0.00 42.97 2.83
4362 5104 5.220854 CCTCAACTGTCAAGGTTGTACAAAG 60.221 44.000 10.51 4.78 42.97 2.77
4364 5106 5.941058 TCAACTGTCAAGGTTGTACAAAGAA 59.059 36.000 10.51 0.00 42.97 2.52
4365 5107 5.813080 ACTGTCAAGGTTGTACAAAGAAC 57.187 39.130 10.51 5.53 0.00 3.01
4367 5109 5.123344 ACTGTCAAGGTTGTACAAAGAACAC 59.877 40.000 10.51 5.68 30.58 3.32
4368 5110 4.396790 TGTCAAGGTTGTACAAAGAACACC 59.603 41.667 10.51 6.97 30.58 4.16
4371 5113 5.477291 TCAAGGTTGTACAAAGAACACCAAA 59.523 36.000 10.51 0.00 30.58 3.28
4414 5156 5.009811 AGACCACCTAGCGATGACTATTAAC 59.990 44.000 0.00 0.00 0.00 2.01
4423 5165 4.613448 GCGATGACTATTAACACTAGAGCG 59.387 45.833 0.00 0.00 0.00 5.03
4457 5203 0.761802 ATCTTCGCCCCTTCCTCATC 59.238 55.000 0.00 0.00 0.00 2.92
4464 5210 1.364171 CCCTTCCTCATCGTAGCCG 59.636 63.158 0.00 0.00 0.00 5.52
4474 5220 1.332144 ATCGTAGCCGGGCAAACCTA 61.332 55.000 23.09 8.93 36.97 3.08
4480 5226 1.862602 GCCGGGCAAACCTAGTTGTG 61.863 60.000 15.62 0.00 36.97 3.33
4481 5227 1.241315 CCGGGCAAACCTAGTTGTGG 61.241 60.000 0.00 0.00 36.97 4.17
4484 5230 2.433436 GGGCAAACCTAGTTGTGGTAG 58.567 52.381 0.00 0.00 36.69 3.18
4487 5233 3.244457 GGCAAACCTAGTTGTGGTAGACT 60.244 47.826 0.00 0.00 36.69 3.24
4488 5234 3.746492 GCAAACCTAGTTGTGGTAGACTG 59.254 47.826 0.00 0.00 36.69 3.51
4491 5237 2.818432 ACCTAGTTGTGGTAGACTGTCG 59.182 50.000 1.52 0.00 35.80 4.35
4492 5238 3.079578 CCTAGTTGTGGTAGACTGTCGA 58.920 50.000 1.52 0.00 0.00 4.20
4494 5240 2.860009 AGTTGTGGTAGACTGTCGAGA 58.140 47.619 1.52 0.00 0.00 4.04
4495 5241 3.220110 AGTTGTGGTAGACTGTCGAGAA 58.780 45.455 1.52 0.00 0.00 2.87
4496 5242 3.253677 AGTTGTGGTAGACTGTCGAGAAG 59.746 47.826 1.52 0.00 0.00 2.85
4497 5243 2.860009 TGTGGTAGACTGTCGAGAAGT 58.140 47.619 1.52 0.35 0.00 3.01
4498 5244 2.812591 TGTGGTAGACTGTCGAGAAGTC 59.187 50.000 16.86 16.86 43.66 3.01
4499 5245 2.812591 GTGGTAGACTGTCGAGAAGTCA 59.187 50.000 23.35 11.37 45.38 3.41
4500 5246 3.440872 GTGGTAGACTGTCGAGAAGTCAT 59.559 47.826 23.35 14.10 45.38 3.06
4501 5247 3.690139 TGGTAGACTGTCGAGAAGTCATC 59.310 47.826 23.35 16.71 45.38 2.92
4502 5248 3.242478 GGTAGACTGTCGAGAAGTCATCG 60.242 52.174 23.35 0.00 45.38 3.84
4503 5249 2.428491 AGACTGTCGAGAAGTCATCGT 58.572 47.619 23.35 6.45 45.38 3.73
4504 5250 2.160615 AGACTGTCGAGAAGTCATCGTG 59.839 50.000 23.35 0.00 45.38 4.35
4505 5251 1.263776 CTGTCGAGAAGTCATCGTGC 58.736 55.000 0.00 0.00 40.95 5.34
4506 5252 0.881796 TGTCGAGAAGTCATCGTGCT 59.118 50.000 0.00 0.00 40.95 4.40
4507 5253 2.081462 TGTCGAGAAGTCATCGTGCTA 58.919 47.619 0.00 0.00 40.95 3.49
4508 5254 2.486592 TGTCGAGAAGTCATCGTGCTAA 59.513 45.455 0.00 0.00 40.95 3.09
4509 5255 3.102276 GTCGAGAAGTCATCGTGCTAAG 58.898 50.000 0.00 0.00 40.95 2.18
4510 5256 2.747989 TCGAGAAGTCATCGTGCTAAGT 59.252 45.455 0.00 0.00 40.95 2.24
4519 5265 4.079970 TCATCGTGCTAAGTCCCTATAGG 58.920 47.826 12.27 12.27 0.00 2.57
4532 5278 4.978099 TCCCTATAGGACTAACGTACCAG 58.022 47.826 21.07 0.00 40.93 4.00
4543 5289 6.183360 GGACTAACGTACCAGAATAGCAACTA 60.183 42.308 0.00 0.00 0.00 2.24
4565 5311 4.883083 AGCGTTGATGAAGAGAAGTGTAA 58.117 39.130 0.00 0.00 0.00 2.41
4570 5316 6.308041 CGTTGATGAAGAGAAGTGTAAATCGA 59.692 38.462 0.00 0.00 0.00 3.59
4594 5340 2.301870 GGATCCAACCTGTAGACACACA 59.698 50.000 6.95 0.00 0.00 3.72
4603 5349 5.676552 ACCTGTAGACACACAAATACAACA 58.323 37.500 0.00 0.00 0.00 3.33
4606 5352 7.284489 ACCTGTAGACACACAAATACAACAAAT 59.716 33.333 0.00 0.00 0.00 2.32
4608 5354 7.348956 TGTAGACACACAAATACAACAAATCG 58.651 34.615 0.00 0.00 0.00 3.34
4624 5370 4.637534 ACAAATCGAGAAAGGATCCATGTG 59.362 41.667 15.82 4.59 0.00 3.21
4636 5382 2.916702 TCCATGTGGATCCATCGAAG 57.083 50.000 19.62 6.57 39.78 3.79
4637 5383 1.417517 TCCATGTGGATCCATCGAAGG 59.582 52.381 19.62 15.32 39.78 3.46
4638 5384 1.141657 CCATGTGGATCCATCGAAGGT 59.858 52.381 19.62 0.00 37.39 3.50
4641 5387 4.505566 CCATGTGGATCCATCGAAGGTAAT 60.506 45.833 19.62 0.00 37.39 1.89
4669 5415 4.592192 ATGCCACGAGATCCGCCG 62.592 66.667 0.00 1.51 43.32 6.46
4679 5425 1.814169 GATCCGCCGGAGACAAACC 60.814 63.158 13.12 0.00 34.05 3.27
4680 5426 2.240162 GATCCGCCGGAGACAAACCT 62.240 60.000 13.12 0.00 34.05 3.50
4681 5427 2.240162 ATCCGCCGGAGACAAACCTC 62.240 60.000 13.12 0.00 34.05 3.85
4689 5435 0.798776 GAGACAAACCTCCACATGCG 59.201 55.000 0.00 0.00 0.00 4.73
4690 5436 1.210155 GACAAACCTCCACATGCGC 59.790 57.895 0.00 0.00 0.00 6.09
4691 5437 1.228245 ACAAACCTCCACATGCGCT 60.228 52.632 9.73 0.00 0.00 5.92
4692 5438 1.237285 ACAAACCTCCACATGCGCTC 61.237 55.000 9.73 0.00 0.00 5.03
4693 5439 1.675641 AAACCTCCACATGCGCTCC 60.676 57.895 9.73 0.00 0.00 4.70
4694 5440 2.410322 AAACCTCCACATGCGCTCCA 62.410 55.000 9.73 0.00 0.00 3.86
4695 5441 2.046023 CCTCCACATGCGCTCCAA 60.046 61.111 9.73 0.00 0.00 3.53
4696 5442 2.401766 CCTCCACATGCGCTCCAAC 61.402 63.158 9.73 0.00 0.00 3.77
4697 5443 2.741985 TCCACATGCGCTCCAACG 60.742 61.111 9.73 0.00 0.00 4.10
4698 5444 2.741985 CCACATGCGCTCCAACGA 60.742 61.111 9.73 0.00 34.06 3.85
4699 5445 2.108514 CCACATGCGCTCCAACGAT 61.109 57.895 9.73 0.00 34.06 3.73
4700 5446 1.061411 CACATGCGCTCCAACGATG 59.939 57.895 9.73 4.32 34.06 3.84
4701 5447 2.023741 CATGCGCTCCAACGATGC 59.976 61.111 9.73 0.00 34.06 3.91
4702 5448 2.124983 ATGCGCTCCAACGATGCT 60.125 55.556 9.73 0.00 34.06 3.79
4703 5449 1.143838 ATGCGCTCCAACGATGCTA 59.856 52.632 9.73 0.00 34.06 3.49
4704 5450 0.877649 ATGCGCTCCAACGATGCTAG 60.878 55.000 9.73 0.00 34.06 3.42
4705 5451 1.226974 GCGCTCCAACGATGCTAGA 60.227 57.895 0.00 0.00 34.06 2.43
4706 5452 0.806102 GCGCTCCAACGATGCTAGAA 60.806 55.000 0.00 0.00 34.06 2.10
4707 5453 1.640428 CGCTCCAACGATGCTAGAAA 58.360 50.000 0.00 0.00 34.06 2.52
4708 5454 1.324736 CGCTCCAACGATGCTAGAAAC 59.675 52.381 0.00 0.00 34.06 2.78
4709 5455 2.346803 GCTCCAACGATGCTAGAAACA 58.653 47.619 0.00 0.00 0.00 2.83
4710 5456 2.094417 GCTCCAACGATGCTAGAAACAC 59.906 50.000 0.00 0.00 0.00 3.32
4711 5457 2.673368 CTCCAACGATGCTAGAAACACC 59.327 50.000 0.00 0.00 0.00 4.16
4712 5458 2.037902 TCCAACGATGCTAGAAACACCA 59.962 45.455 0.00 0.00 0.00 4.17
4713 5459 2.159627 CCAACGATGCTAGAAACACCAC 59.840 50.000 0.00 0.00 0.00 4.16
4714 5460 2.094762 ACGATGCTAGAAACACCACC 57.905 50.000 0.00 0.00 0.00 4.61
4715 5461 1.346395 ACGATGCTAGAAACACCACCA 59.654 47.619 0.00 0.00 0.00 4.17
4716 5462 2.002586 CGATGCTAGAAACACCACCAG 58.997 52.381 0.00 0.00 0.00 4.00
4717 5463 2.359900 GATGCTAGAAACACCACCAGG 58.640 52.381 0.00 0.00 42.21 4.45
4718 5464 1.429930 TGCTAGAAACACCACCAGGA 58.570 50.000 0.00 0.00 38.69 3.86
4719 5465 1.071699 TGCTAGAAACACCACCAGGAC 59.928 52.381 0.00 0.00 38.69 3.85
4720 5466 1.939838 GCTAGAAACACCACCAGGACG 60.940 57.143 0.00 0.00 38.69 4.79
4721 5467 0.682852 TAGAAACACCACCAGGACGG 59.317 55.000 0.00 0.00 42.50 4.79
4722 5468 1.599797 GAAACACCACCAGGACGGG 60.600 63.158 0.00 0.00 40.22 5.28
4723 5469 3.128032 AAACACCACCAGGACGGGG 62.128 63.158 0.00 0.00 40.22 5.73
4724 5470 4.567597 ACACCACCAGGACGGGGA 62.568 66.667 8.75 0.00 43.25 4.81
4725 5471 3.706373 CACCACCAGGACGGGGAG 61.706 72.222 0.00 0.00 43.25 4.30
4726 5472 4.250170 ACCACCAGGACGGGGAGT 62.250 66.667 0.00 0.00 43.25 3.85
4727 5473 2.038329 CCACCAGGACGGGGAGTA 59.962 66.667 0.00 0.00 43.25 2.59
4728 5474 2.058595 CCACCAGGACGGGGAGTAG 61.059 68.421 0.00 0.00 43.25 2.57
4729 5475 2.058595 CACCAGGACGGGGAGTAGG 61.059 68.421 0.00 0.00 43.25 3.18
4730 5476 3.155167 CCAGGACGGGGAGTAGGC 61.155 72.222 0.00 0.00 0.00 3.93
4731 5477 2.363795 CAGGACGGGGAGTAGGCA 60.364 66.667 0.00 0.00 0.00 4.75
4732 5478 1.987855 CAGGACGGGGAGTAGGCAA 60.988 63.158 0.00 0.00 0.00 4.52
4733 5479 1.686110 AGGACGGGGAGTAGGCAAG 60.686 63.158 0.00 0.00 0.00 4.01
4734 5480 2.732619 GGACGGGGAGTAGGCAAGG 61.733 68.421 0.00 0.00 0.00 3.61
4735 5481 1.684734 GACGGGGAGTAGGCAAGGA 60.685 63.158 0.00 0.00 0.00 3.36
4736 5482 1.677637 GACGGGGAGTAGGCAAGGAG 61.678 65.000 0.00 0.00 0.00 3.69
4737 5483 1.381327 CGGGGAGTAGGCAAGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
4738 5484 0.976073 CGGGGAGTAGGCAAGGAGAA 60.976 60.000 0.00 0.00 0.00 2.87
4739 5485 0.542333 GGGGAGTAGGCAAGGAGAAC 59.458 60.000 0.00 0.00 0.00 3.01
4740 5486 1.574263 GGGAGTAGGCAAGGAGAACT 58.426 55.000 0.00 0.00 0.00 3.01
4741 5487 1.909986 GGGAGTAGGCAAGGAGAACTT 59.090 52.381 0.00 0.00 41.00 2.66
4742 5488 2.306219 GGGAGTAGGCAAGGAGAACTTT 59.694 50.000 0.00 0.00 37.29 2.66
4743 5489 3.518303 GGGAGTAGGCAAGGAGAACTTTA 59.482 47.826 0.00 0.00 37.29 1.85
4744 5490 4.164413 GGGAGTAGGCAAGGAGAACTTTAT 59.836 45.833 0.00 0.00 37.29 1.40
4745 5491 5.339282 GGGAGTAGGCAAGGAGAACTTTATT 60.339 44.000 0.00 0.00 37.29 1.40
4746 5492 5.818336 GGAGTAGGCAAGGAGAACTTTATTC 59.182 44.000 0.00 0.00 37.29 1.75
4747 5493 5.746284 AGTAGGCAAGGAGAACTTTATTCC 58.254 41.667 0.00 0.00 37.29 3.01
4748 5494 3.610911 AGGCAAGGAGAACTTTATTCCG 58.389 45.455 0.00 0.00 37.29 4.30
4749 5495 3.009143 AGGCAAGGAGAACTTTATTCCGT 59.991 43.478 0.00 0.00 37.29 4.69
4750 5496 3.374367 GGCAAGGAGAACTTTATTCCGTC 59.626 47.826 0.00 0.00 37.29 4.79
4751 5497 4.254492 GCAAGGAGAACTTTATTCCGTCT 58.746 43.478 0.00 0.00 37.29 4.18
4752 5498 4.695928 GCAAGGAGAACTTTATTCCGTCTT 59.304 41.667 0.00 0.00 37.29 3.01
4753 5499 5.163844 GCAAGGAGAACTTTATTCCGTCTTC 60.164 44.000 0.00 0.00 37.29 2.87
4754 5500 5.740290 AGGAGAACTTTATTCCGTCTTCA 57.260 39.130 0.00 0.00 36.11 3.02
4755 5501 5.725362 AGGAGAACTTTATTCCGTCTTCAG 58.275 41.667 0.00 0.00 36.11 3.02
4756 5502 5.480772 AGGAGAACTTTATTCCGTCTTCAGA 59.519 40.000 0.00 0.00 36.11 3.27
4757 5503 5.808030 GGAGAACTTTATTCCGTCTTCAGAG 59.192 44.000 0.00 0.00 0.00 3.35
4758 5504 6.350277 GGAGAACTTTATTCCGTCTTCAGAGA 60.350 42.308 0.00 0.00 0.00 3.10
4759 5505 6.626302 AGAACTTTATTCCGTCTTCAGAGAG 58.374 40.000 0.00 0.00 31.07 3.20
4760 5506 4.749976 ACTTTATTCCGTCTTCAGAGAGC 58.250 43.478 0.00 0.00 31.07 4.09
4761 5507 3.802948 TTATTCCGTCTTCAGAGAGCC 57.197 47.619 0.00 0.00 31.07 4.70
4762 5508 0.457851 ATTCCGTCTTCAGAGAGCCG 59.542 55.000 0.00 0.00 31.07 5.52
4763 5509 2.202676 CCGTCTTCAGAGAGCCGC 60.203 66.667 0.00 0.00 31.07 6.53
4764 5510 2.202676 CGTCTTCAGAGAGCCGCC 60.203 66.667 0.00 0.00 31.07 6.13
4765 5511 2.202676 GTCTTCAGAGAGCCGCCG 60.203 66.667 0.00 0.00 31.07 6.46
4766 5512 4.135153 TCTTCAGAGAGCCGCCGC 62.135 66.667 0.00 0.00 0.00 6.53
4803 5549 5.246981 ACAGATGTGAAAGAATCAAGGGA 57.753 39.130 0.00 0.00 40.50 4.20
4804 5550 5.824421 ACAGATGTGAAAGAATCAAGGGAT 58.176 37.500 0.00 0.00 40.50 3.85
4805 5551 5.651139 ACAGATGTGAAAGAATCAAGGGATG 59.349 40.000 0.00 0.00 40.50 3.51
4806 5552 5.067413 CAGATGTGAAAGAATCAAGGGATGG 59.933 44.000 0.00 0.00 40.50 3.51
4807 5553 3.700538 TGTGAAAGAATCAAGGGATGGG 58.299 45.455 0.00 0.00 40.50 4.00
4808 5554 3.333381 TGTGAAAGAATCAAGGGATGGGA 59.667 43.478 0.00 0.00 40.50 4.37
4809 5555 4.017222 TGTGAAAGAATCAAGGGATGGGAT 60.017 41.667 0.00 0.00 40.50 3.85
4810 5556 5.193527 TGTGAAAGAATCAAGGGATGGGATA 59.806 40.000 0.00 0.00 40.50 2.59
4811 5557 5.767168 GTGAAAGAATCAAGGGATGGGATAG 59.233 44.000 0.00 0.00 40.50 2.08
4812 5558 5.671735 TGAAAGAATCAAGGGATGGGATAGA 59.328 40.000 0.00 0.00 34.30 1.98
4813 5559 6.333702 TGAAAGAATCAAGGGATGGGATAGAT 59.666 38.462 0.00 0.00 34.30 1.98
4814 5560 5.775813 AGAATCAAGGGATGGGATAGATG 57.224 43.478 0.00 0.00 32.92 2.90
4815 5561 4.539293 AGAATCAAGGGATGGGATAGATGG 59.461 45.833 0.00 0.00 32.92 3.51
4816 5562 1.988107 TCAAGGGATGGGATAGATGGC 59.012 52.381 0.00 0.00 0.00 4.40
4817 5563 1.991070 CAAGGGATGGGATAGATGGCT 59.009 52.381 0.00 0.00 0.00 4.75
4818 5564 2.377869 CAAGGGATGGGATAGATGGCTT 59.622 50.000 0.00 0.00 0.00 4.35
4819 5565 1.991070 AGGGATGGGATAGATGGCTTG 59.009 52.381 0.00 0.00 0.00 4.01
4820 5566 1.005215 GGGATGGGATAGATGGCTTGG 59.995 57.143 0.00 0.00 0.00 3.61
4821 5567 1.707427 GGATGGGATAGATGGCTTGGT 59.293 52.381 0.00 0.00 0.00 3.67
4822 5568 2.290577 GGATGGGATAGATGGCTTGGTC 60.291 54.545 0.00 0.00 0.00 4.02
4823 5569 1.891933 TGGGATAGATGGCTTGGTCA 58.108 50.000 0.00 0.00 0.00 4.02
4824 5570 2.204463 TGGGATAGATGGCTTGGTCAA 58.796 47.619 0.00 0.00 0.00 3.18
4825 5571 2.580322 TGGGATAGATGGCTTGGTCAAA 59.420 45.455 0.00 0.00 0.00 2.69
4826 5572 3.205056 TGGGATAGATGGCTTGGTCAAAT 59.795 43.478 0.00 0.00 0.00 2.32
4827 5573 4.218312 GGGATAGATGGCTTGGTCAAATT 58.782 43.478 0.00 0.00 0.00 1.82
4828 5574 4.038402 GGGATAGATGGCTTGGTCAAATTG 59.962 45.833 0.00 0.00 0.00 2.32
4829 5575 4.889409 GGATAGATGGCTTGGTCAAATTGA 59.111 41.667 0.00 0.00 0.00 2.57
4830 5576 5.537674 GGATAGATGGCTTGGTCAAATTGAT 59.462 40.000 0.00 0.00 0.00 2.57
4831 5577 4.730949 AGATGGCTTGGTCAAATTGATG 57.269 40.909 0.00 0.00 0.00 3.07
4832 5578 3.449737 AGATGGCTTGGTCAAATTGATGG 59.550 43.478 0.00 0.00 0.00 3.51
4833 5579 1.275856 TGGCTTGGTCAAATTGATGGC 59.724 47.619 0.00 3.80 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.606631 GGCCACATATCTTCTATTCCTAAATAG 57.393 37.037 0.00 0.00 43.88 1.73
7 8 8.548877 GGGCCACATATCTTCTATTCCTAAATA 58.451 37.037 4.39 0.00 0.00 1.40
8 9 7.406104 GGGCCACATATCTTCTATTCCTAAAT 58.594 38.462 4.39 0.00 0.00 1.40
9 10 6.240176 GGGGCCACATATCTTCTATTCCTAAA 60.240 42.308 4.39 0.00 0.00 1.85
10 11 5.250774 GGGGCCACATATCTTCTATTCCTAA 59.749 44.000 4.39 0.00 0.00 2.69
11 12 4.783227 GGGGCCACATATCTTCTATTCCTA 59.217 45.833 4.39 0.00 0.00 2.94
12 13 3.589288 GGGGCCACATATCTTCTATTCCT 59.411 47.826 4.39 0.00 0.00 3.36
13 14 3.589288 AGGGGCCACATATCTTCTATTCC 59.411 47.826 8.31 0.00 0.00 3.01
14 15 4.287067 TCAGGGGCCACATATCTTCTATTC 59.713 45.833 8.31 0.00 0.00 1.75
15 16 4.242811 TCAGGGGCCACATATCTTCTATT 58.757 43.478 8.31 0.00 0.00 1.73
16 17 3.843027 CTCAGGGGCCACATATCTTCTAT 59.157 47.826 8.31 0.00 0.00 1.98
17 18 3.116746 TCTCAGGGGCCACATATCTTCTA 60.117 47.826 8.31 0.00 0.00 2.10
18 19 2.053244 CTCAGGGGCCACATATCTTCT 58.947 52.381 8.31 0.00 0.00 2.85
19 20 2.038295 CTCTCAGGGGCCACATATCTTC 59.962 54.545 8.31 0.00 0.00 2.87
20 21 2.053244 CTCTCAGGGGCCACATATCTT 58.947 52.381 8.31 0.00 0.00 2.40
21 22 1.221523 TCTCTCAGGGGCCACATATCT 59.778 52.381 8.31 0.00 0.00 1.98
22 23 1.722034 TCTCTCAGGGGCCACATATC 58.278 55.000 8.31 0.00 0.00 1.63
23 24 2.429933 ATCTCTCAGGGGCCACATAT 57.570 50.000 8.31 0.00 0.00 1.78
24 25 3.567375 ATATCTCTCAGGGGCCACATA 57.433 47.619 8.31 0.00 0.00 2.29
25 26 2.374504 CAATATCTCTCAGGGGCCACAT 59.625 50.000 8.31 0.00 0.00 3.21
26 27 1.770658 CAATATCTCTCAGGGGCCACA 59.229 52.381 8.31 0.00 0.00 4.17
27 28 2.050144 TCAATATCTCTCAGGGGCCAC 58.950 52.381 4.39 0.00 0.00 5.01
28 29 2.050144 GTCAATATCTCTCAGGGGCCA 58.950 52.381 4.39 0.00 0.00 5.36
29 30 1.349357 GGTCAATATCTCTCAGGGGCC 59.651 57.143 0.00 0.00 0.00 5.80
30 31 2.050144 TGGTCAATATCTCTCAGGGGC 58.950 52.381 0.00 0.00 0.00 5.80
31 32 3.906218 TCATGGTCAATATCTCTCAGGGG 59.094 47.826 0.00 0.00 0.00 4.79
32 33 4.837298 TCTCATGGTCAATATCTCTCAGGG 59.163 45.833 0.00 0.00 0.00 4.45
33 34 5.539574 ACTCTCATGGTCAATATCTCTCAGG 59.460 44.000 0.00 0.00 0.00 3.86
34 35 6.653526 ACTCTCATGGTCAATATCTCTCAG 57.346 41.667 0.00 0.00 0.00 3.35
35 36 8.718158 AATACTCTCATGGTCAATATCTCTCA 57.282 34.615 0.00 0.00 0.00 3.27
63 64 9.251440 GGGGGTTATGATTTTTCTTAACTAACT 57.749 33.333 9.97 0.00 33.46 2.24
73 74 5.186797 TCACATGTGGGGGTTATGATTTTTC 59.813 40.000 25.16 0.00 0.00 2.29
76 77 4.280819 CTCACATGTGGGGGTTATGATTT 58.719 43.478 25.16 0.00 0.00 2.17
80 81 1.064463 AGCTCACATGTGGGGGTTATG 60.064 52.381 26.71 7.92 0.00 1.90
255 256 2.719739 ACTCATCAACATGAAGGGCTG 58.280 47.619 0.00 0.00 38.63 4.85
289 290 3.815809 TCTTTTCTTCTTTCGCCTCCAA 58.184 40.909 0.00 0.00 0.00 3.53
825 846 8.539544 GGCCAAGCCCATGTAAATTATAATTAT 58.460 33.333 11.07 2.97 44.06 1.28
826 847 7.902087 GGCCAAGCCCATGTAAATTATAATTA 58.098 34.615 11.07 0.00 44.06 1.40
827 848 6.768483 GGCCAAGCCCATGTAAATTATAATT 58.232 36.000 4.81 4.81 44.06 1.40
828 849 6.358974 GGCCAAGCCCATGTAAATTATAAT 57.641 37.500 0.00 0.00 44.06 1.28
829 850 5.799827 GGCCAAGCCCATGTAAATTATAA 57.200 39.130 0.00 0.00 44.06 0.98
843 864 4.336581 GTTGAAAACGGCCAAGCC 57.663 55.556 2.24 0.00 46.75 4.35
900 921 3.833070 GGTGTTGGGATAGACCGATAGAT 59.167 47.826 0.00 0.00 40.11 1.98
904 925 1.129058 GGGTGTTGGGATAGACCGAT 58.871 55.000 0.00 0.00 40.11 4.18
906 927 1.268992 TGGGGTGTTGGGATAGACCG 61.269 60.000 0.00 0.00 40.11 4.79
907 928 0.255033 GTGGGGTGTTGGGATAGACC 59.745 60.000 0.00 0.00 38.08 3.85
908 929 0.255033 GGTGGGGTGTTGGGATAGAC 59.745 60.000 0.00 0.00 0.00 2.59
915 956 2.520741 GTGGTGGTGGGGTGTTGG 60.521 66.667 0.00 0.00 0.00 3.77
917 958 3.828023 GGGTGGTGGTGGGGTGTT 61.828 66.667 0.00 0.00 0.00 3.32
972 1622 0.324943 GGAGGTGGTTCTGCTGCTTA 59.675 55.000 0.00 0.00 0.00 3.09
973 1623 1.073897 GGAGGTGGTTCTGCTGCTT 59.926 57.895 0.00 0.00 0.00 3.91
974 1624 1.495579 ATGGAGGTGGTTCTGCTGCT 61.496 55.000 0.00 0.00 0.00 4.24
975 1625 1.001641 ATGGAGGTGGTTCTGCTGC 60.002 57.895 0.00 0.00 0.00 5.25
976 1626 0.393537 GGATGGAGGTGGTTCTGCTG 60.394 60.000 0.00 0.00 0.00 4.41
977 1627 0.842030 TGGATGGAGGTGGTTCTGCT 60.842 55.000 0.00 0.00 0.00 4.24
978 1628 0.393537 CTGGATGGAGGTGGTTCTGC 60.394 60.000 0.00 0.00 0.00 4.26
979 1629 0.393537 GCTGGATGGAGGTGGTTCTG 60.394 60.000 0.00 0.00 0.00 3.02
980 1630 1.566298 GGCTGGATGGAGGTGGTTCT 61.566 60.000 0.00 0.00 0.00 3.01
981 1631 1.077429 GGCTGGATGGAGGTGGTTC 60.077 63.158 0.00 0.00 0.00 3.62
1024 1674 4.012374 ACCACAAGGATTAGAGCAACATG 58.988 43.478 0.00 0.00 38.69 3.21
1025 1675 4.263462 TGACCACAAGGATTAGAGCAACAT 60.263 41.667 0.00 0.00 38.69 2.71
1050 1700 1.424493 GCGGTAGCACATCTGTCAGC 61.424 60.000 0.00 0.00 44.35 4.26
1427 2077 1.945387 ATTGATGCTACGAGGCACAG 58.055 50.000 8.91 0.00 45.36 3.66
1435 2085 3.627123 TGATTCACCCAATTGATGCTACG 59.373 43.478 7.12 0.00 0.00 3.51
1501 2151 9.930693 GTATTTAGGAATGGAGGAAGTATACTG 57.069 37.037 6.06 0.00 0.00 2.74
1553 2203 5.392380 GCAAAATGGGTGAATCTACACTCTG 60.392 44.000 0.00 0.00 41.33 3.35
1561 2243 5.018809 ACACATAGCAAAATGGGTGAATCT 58.981 37.500 1.29 0.00 41.93 2.40
1568 2250 5.182950 TGAACTACACACATAGCAAAATGGG 59.817 40.000 0.00 0.00 36.29 4.00
1579 2261 8.489489 AGAGATTCCAATATGAACTACACACAT 58.511 33.333 0.00 0.00 0.00 3.21
1614 2296 9.839817 TGATACTCATTCCGTTCCAAAATATAA 57.160 29.630 0.00 0.00 0.00 0.98
1622 2304 3.118445 TGCATGATACTCATTCCGTTCCA 60.118 43.478 0.00 0.00 34.28 3.53
1627 2309 5.678132 TCAAATGCATGATACTCATTCCG 57.322 39.130 0.00 0.00 34.28 4.30
1691 2373 3.023832 TCGACATTCTAGCCACTGATGA 58.976 45.455 0.00 0.00 0.00 2.92
1712 2394 0.461961 GGCTGGAAGTCGTCATAGCT 59.538 55.000 11.79 0.00 37.83 3.32
1749 2431 5.470437 AGAAAAAGGATCGAACAAGAACTCC 59.530 40.000 0.00 0.00 0.00 3.85
1805 2487 9.620660 CCAAATTAATGTCTTGTAACCACTAAC 57.379 33.333 0.00 0.00 0.00 2.34
1811 2493 8.671028 ACGATACCAAATTAATGTCTTGTAACC 58.329 33.333 0.00 0.00 0.00 2.85
2076 2758 0.586319 TCGAAACCAAGAAAGCTGCG 59.414 50.000 0.00 0.00 0.00 5.18
2112 2794 5.373812 ACATGGGGAAACTATCTACCTTG 57.626 43.478 0.00 0.00 36.83 3.61
2123 2805 3.828875 TTCAACCAAACATGGGGAAAC 57.171 42.857 7.25 0.00 0.00 2.78
2617 3306 6.540189 TCCATCATAAACTTCTGAAAGCTAGC 59.460 38.462 6.62 6.62 35.81 3.42
2747 3436 6.703607 CCGAAGTTTCTGATAGTGATGCTATT 59.296 38.462 0.00 0.00 40.30 1.73
2777 3466 8.394667 ACTTTTCAAAAGTCGAGACAAAATTC 57.605 30.769 9.89 0.00 0.00 2.17
2965 3657 1.879380 CAAAGGTCGATCAAACAGGCA 59.121 47.619 0.00 0.00 0.00 4.75
2971 3663 4.521256 CCCCTAAAACAAAGGTCGATCAAA 59.479 41.667 0.00 0.00 31.70 2.69
2972 3664 4.076394 CCCCTAAAACAAAGGTCGATCAA 58.924 43.478 0.00 0.00 31.70 2.57
3058 3750 2.500504 AGCTGCTACCTTGGTTACCTAC 59.499 50.000 0.00 0.00 0.00 3.18
3074 3766 2.678471 ATGGCAATTAACCAAGCTGC 57.322 45.000 3.64 0.00 41.49 5.25
3201 3893 2.682494 CCAGCAAGCCCCTGCAAT 60.682 61.111 5.89 0.00 45.18 3.56
3349 4041 4.019174 CAAGACCCAGAAATAGGCATTGT 58.981 43.478 0.00 0.00 0.00 2.71
3359 4051 1.071699 CCGTTCCTCAAGACCCAGAAA 59.928 52.381 0.00 0.00 0.00 2.52
3606 4298 3.016736 CAAAGTATTCCCCGTGCTTGAT 58.983 45.455 0.00 0.00 0.00 2.57
3701 4393 2.672961 TCTTGGCGATCCAGTACTTG 57.327 50.000 0.00 0.00 44.53 3.16
3746 4438 1.153549 CAGCCAGACGTAGCCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
4133 4865 2.817258 CTCCGTTCCAAAATAAGTGCCA 59.183 45.455 0.00 0.00 0.00 4.92
4135 4867 2.163613 CCCTCCGTTCCAAAATAAGTGC 59.836 50.000 0.00 0.00 0.00 4.40
4140 4872 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4151 4883 7.598759 TTTGTCATATTCTAGTACTCCCTCC 57.401 40.000 0.00 0.00 0.00 4.30
4266 4998 8.743714 GGGAAATTGTAGAAAGAGTTGATCAAT 58.256 33.333 12.12 0.66 0.00 2.57
4272 5004 5.325239 AGGGGGAAATTGTAGAAAGAGTTG 58.675 41.667 0.00 0.00 0.00 3.16
4275 5007 5.821097 AGAAGGGGGAAATTGTAGAAAGAG 58.179 41.667 0.00 0.00 0.00 2.85
4314 5046 6.586463 GGAATAGATCGAAAGTTATCATCGCA 59.414 38.462 0.00 0.00 36.56 5.10
4319 5052 8.696374 AGTTGAGGAATAGATCGAAAGTTATCA 58.304 33.333 0.00 0.00 0.00 2.15
4329 5062 5.046529 CCTTGACAGTTGAGGAATAGATCG 58.953 45.833 0.00 0.00 32.11 3.69
4339 5072 5.584649 TCTTTGTACAACCTTGACAGTTGAG 59.415 40.000 8.07 0.00 46.03 3.02
4387 5129 1.002684 GTCATCGCTAGGTGGTCTACG 60.003 57.143 0.00 0.00 0.00 3.51
4388 5130 2.299521 AGTCATCGCTAGGTGGTCTAC 58.700 52.381 0.00 0.00 0.00 2.59
4391 5133 5.221130 GTTAATAGTCATCGCTAGGTGGTC 58.779 45.833 0.00 0.00 0.00 4.02
4414 5156 1.064946 CCTTCGGCTCGCTCTAGTG 59.935 63.158 0.00 0.00 0.00 2.74
4449 5195 2.792947 GCCCGGCTACGATGAGGAA 61.793 63.158 0.71 0.00 44.60 3.36
4457 5203 1.520787 CTAGGTTTGCCCGGCTACG 60.521 63.158 11.61 0.00 38.74 3.51
4464 5210 2.039348 TCTACCACAACTAGGTTTGCCC 59.961 50.000 0.00 0.00 40.54 5.36
4474 5220 2.860009 TCTCGACAGTCTACCACAACT 58.140 47.619 0.00 0.00 0.00 3.16
4480 5226 3.242478 CGATGACTTCTCGACAGTCTACC 60.242 52.174 17.13 8.28 41.25 3.18
4481 5227 3.371591 ACGATGACTTCTCGACAGTCTAC 59.628 47.826 17.13 11.48 41.25 2.59
4484 5230 2.510874 CACGATGACTTCTCGACAGTC 58.489 52.381 11.59 11.59 41.08 3.51
4487 5233 0.881796 AGCACGATGACTTCTCGACA 59.118 50.000 0.00 0.00 39.38 4.35
4488 5234 2.826979 TAGCACGATGACTTCTCGAC 57.173 50.000 0.00 0.00 39.38 4.20
4491 5237 3.440228 GGACTTAGCACGATGACTTCTC 58.560 50.000 0.00 0.00 0.00 2.87
4492 5238 2.166664 GGGACTTAGCACGATGACTTCT 59.833 50.000 0.00 0.00 0.00 2.85
4494 5240 2.180276 AGGGACTTAGCACGATGACTT 58.820 47.619 0.00 0.00 27.25 3.01
4495 5241 1.853963 AGGGACTTAGCACGATGACT 58.146 50.000 0.00 0.00 27.25 3.41
4496 5242 4.082679 CCTATAGGGACTTAGCACGATGAC 60.083 50.000 11.33 0.00 41.75 3.06
4497 5243 4.079970 CCTATAGGGACTTAGCACGATGA 58.920 47.826 11.33 0.00 41.75 2.92
4498 5244 4.079970 TCCTATAGGGACTTAGCACGATG 58.920 47.826 18.97 0.00 41.75 3.84
4499 5245 4.383931 TCCTATAGGGACTTAGCACGAT 57.616 45.455 18.97 0.00 41.75 3.73
4500 5246 3.870538 TCCTATAGGGACTTAGCACGA 57.129 47.619 18.97 0.00 41.75 4.35
4510 5256 4.660303 TCTGGTACGTTAGTCCTATAGGGA 59.340 45.833 18.97 2.98 42.77 4.20
4519 5265 5.648572 AGTTGCTATTCTGGTACGTTAGTC 58.351 41.667 0.00 0.00 0.00 2.59
4522 5268 5.585390 GCTAGTTGCTATTCTGGTACGTTA 58.415 41.667 0.00 0.00 38.95 3.18
4526 5272 4.043037 ACGCTAGTTGCTATTCTGGTAC 57.957 45.455 0.00 0.00 40.11 3.34
4543 5289 3.393089 ACACTTCTCTTCATCAACGCT 57.607 42.857 0.00 0.00 0.00 5.07
4546 5292 7.582435 TCGATTTACACTTCTCTTCATCAAC 57.418 36.000 0.00 0.00 0.00 3.18
4547 5293 8.601845 TTTCGATTTACACTTCTCTTCATCAA 57.398 30.769 0.00 0.00 0.00 2.57
4548 5294 7.331934 CCTTTCGATTTACACTTCTCTTCATCA 59.668 37.037 0.00 0.00 0.00 3.07
4565 5311 3.721087 ACAGGTTGGATCCTTTCGATT 57.279 42.857 14.23 0.00 35.37 3.34
4570 5316 3.650942 TGTGTCTACAGGTTGGATCCTTT 59.349 43.478 14.23 0.00 35.37 3.11
4594 5340 7.393234 TGGATCCTTTCTCGATTTGTTGTATTT 59.607 33.333 14.23 0.00 0.00 1.40
4603 5349 4.080356 TCCACATGGATCCTTTCTCGATTT 60.080 41.667 14.23 0.00 39.78 2.17
4606 5352 2.466846 TCCACATGGATCCTTTCTCGA 58.533 47.619 14.23 0.00 39.78 4.04
4624 5370 2.338500 GCGATTACCTTCGATGGATCC 58.662 52.381 23.15 4.20 41.62 3.36
4631 5377 1.434696 GGTCGGCGATTACCTTCGA 59.565 57.895 14.79 0.00 41.62 3.71
4633 5379 0.179129 TTCGGTCGGCGATTACCTTC 60.179 55.000 14.79 0.00 33.34 3.46
4636 5382 1.828331 GCATTCGGTCGGCGATTACC 61.828 60.000 14.79 9.82 0.00 2.85
4637 5383 1.563173 GCATTCGGTCGGCGATTAC 59.437 57.895 14.79 5.97 0.00 1.89
4638 5384 1.593209 GGCATTCGGTCGGCGATTA 60.593 57.895 14.79 0.00 0.00 1.75
4659 5405 0.806492 GTTTGTCTCCGGCGGATCTC 60.806 60.000 31.23 21.40 0.00 2.75
4679 5425 2.743752 CGTTGGAGCGCATGTGGAG 61.744 63.158 11.47 0.00 0.00 3.86
4680 5426 2.520465 ATCGTTGGAGCGCATGTGGA 62.520 55.000 11.47 0.00 0.00 4.02
4681 5427 2.108514 ATCGTTGGAGCGCATGTGG 61.109 57.895 11.47 0.00 0.00 4.17
4682 5428 1.061411 CATCGTTGGAGCGCATGTG 59.939 57.895 11.47 0.66 0.00 3.21
4683 5429 2.753966 GCATCGTTGGAGCGCATGT 61.754 57.895 11.47 0.00 0.00 3.21
4684 5430 1.153597 TAGCATCGTTGGAGCGCATG 61.154 55.000 11.47 3.37 0.00 4.06
4685 5431 0.877649 CTAGCATCGTTGGAGCGCAT 60.878 55.000 11.47 0.00 0.00 4.73
4686 5432 1.519234 CTAGCATCGTTGGAGCGCA 60.519 57.895 11.47 0.00 0.00 6.09
4687 5433 0.806102 TTCTAGCATCGTTGGAGCGC 60.806 55.000 0.00 0.00 0.00 5.92
4688 5434 1.324736 GTTTCTAGCATCGTTGGAGCG 59.675 52.381 0.00 0.00 0.00 5.03
4689 5435 2.094417 GTGTTTCTAGCATCGTTGGAGC 59.906 50.000 0.00 0.00 0.00 4.70
4690 5436 2.673368 GGTGTTTCTAGCATCGTTGGAG 59.327 50.000 0.00 0.00 0.00 3.86
4691 5437 2.037902 TGGTGTTTCTAGCATCGTTGGA 59.962 45.455 0.00 0.00 0.00 3.53
4692 5438 2.159627 GTGGTGTTTCTAGCATCGTTGG 59.840 50.000 0.00 0.00 0.00 3.77
4693 5439 2.159627 GGTGGTGTTTCTAGCATCGTTG 59.840 50.000 0.00 0.00 0.00 4.10
4694 5440 2.224426 TGGTGGTGTTTCTAGCATCGTT 60.224 45.455 0.00 0.00 32.01 3.85
4695 5441 1.346395 TGGTGGTGTTTCTAGCATCGT 59.654 47.619 0.00 0.00 32.01 3.73
4696 5442 2.002586 CTGGTGGTGTTTCTAGCATCG 58.997 52.381 0.00 0.00 34.76 3.84
4697 5443 2.027192 TCCTGGTGGTGTTTCTAGCATC 60.027 50.000 0.00 0.00 34.76 3.91
4698 5444 1.985159 TCCTGGTGGTGTTTCTAGCAT 59.015 47.619 0.00 0.00 34.76 3.79
4699 5445 1.071699 GTCCTGGTGGTGTTTCTAGCA 59.928 52.381 0.00 0.00 34.16 3.49
4700 5446 1.809684 GTCCTGGTGGTGTTTCTAGC 58.190 55.000 0.00 0.00 34.23 3.42
4701 5447 1.337823 CCGTCCTGGTGGTGTTTCTAG 60.338 57.143 0.00 0.00 34.23 2.43
4702 5448 0.682852 CCGTCCTGGTGGTGTTTCTA 59.317 55.000 0.00 0.00 34.23 2.10
4703 5449 1.450211 CCGTCCTGGTGGTGTTTCT 59.550 57.895 0.00 0.00 34.23 2.52
4704 5450 1.599797 CCCGTCCTGGTGGTGTTTC 60.600 63.158 6.91 0.00 35.15 2.78
4705 5451 2.513895 CCCGTCCTGGTGGTGTTT 59.486 61.111 6.91 0.00 35.15 2.83
4706 5452 3.566210 CCCCGTCCTGGTGGTGTT 61.566 66.667 6.91 0.00 35.15 3.32
4707 5453 4.567597 TCCCCGTCCTGGTGGTGT 62.568 66.667 6.91 0.00 35.15 4.16
4708 5454 3.706373 CTCCCCGTCCTGGTGGTG 61.706 72.222 6.91 0.00 35.15 4.17
4709 5455 2.800159 CTACTCCCCGTCCTGGTGGT 62.800 65.000 6.91 0.00 35.15 4.16
4710 5456 2.038329 TACTCCCCGTCCTGGTGG 59.962 66.667 0.00 0.00 35.15 4.61
4711 5457 2.058595 CCTACTCCCCGTCCTGGTG 61.059 68.421 0.00 0.00 35.15 4.17
4712 5458 2.363361 CCTACTCCCCGTCCTGGT 59.637 66.667 0.00 0.00 35.15 4.00
4713 5459 3.155167 GCCTACTCCCCGTCCTGG 61.155 72.222 0.00 0.00 37.55 4.45
4714 5460 1.961180 CTTGCCTACTCCCCGTCCTG 61.961 65.000 0.00 0.00 0.00 3.86
4715 5461 1.686110 CTTGCCTACTCCCCGTCCT 60.686 63.158 0.00 0.00 0.00 3.85
4716 5462 2.732619 CCTTGCCTACTCCCCGTCC 61.733 68.421 0.00 0.00 0.00 4.79
4717 5463 1.677637 CTCCTTGCCTACTCCCCGTC 61.678 65.000 0.00 0.00 0.00 4.79
4718 5464 1.686110 CTCCTTGCCTACTCCCCGT 60.686 63.158 0.00 0.00 0.00 5.28
4719 5465 0.976073 TTCTCCTTGCCTACTCCCCG 60.976 60.000 0.00 0.00 0.00 5.73
4720 5466 0.542333 GTTCTCCTTGCCTACTCCCC 59.458 60.000 0.00 0.00 0.00 4.81
4721 5467 1.574263 AGTTCTCCTTGCCTACTCCC 58.426 55.000 0.00 0.00 0.00 4.30
4722 5468 3.704800 AAAGTTCTCCTTGCCTACTCC 57.295 47.619 0.00 0.00 32.32 3.85
4723 5469 5.818336 GGAATAAAGTTCTCCTTGCCTACTC 59.182 44.000 0.00 0.00 32.32 2.59
4724 5470 5.627040 CGGAATAAAGTTCTCCTTGCCTACT 60.627 44.000 0.00 0.00 32.32 2.57
4725 5471 4.571176 CGGAATAAAGTTCTCCTTGCCTAC 59.429 45.833 0.00 0.00 32.32 3.18
4726 5472 4.224370 ACGGAATAAAGTTCTCCTTGCCTA 59.776 41.667 0.00 0.00 32.32 3.93
4727 5473 3.009143 ACGGAATAAAGTTCTCCTTGCCT 59.991 43.478 0.00 0.00 32.32 4.75
4728 5474 3.344515 ACGGAATAAAGTTCTCCTTGCC 58.655 45.455 0.00 0.00 32.32 4.52
4729 5475 4.254492 AGACGGAATAAAGTTCTCCTTGC 58.746 43.478 0.00 0.00 32.32 4.01
4730 5476 5.932303 TGAAGACGGAATAAAGTTCTCCTTG 59.068 40.000 0.00 0.00 32.32 3.61
4731 5477 6.014499 TCTGAAGACGGAATAAAGTTCTCCTT 60.014 38.462 0.00 0.00 33.79 3.36
4732 5478 5.480772 TCTGAAGACGGAATAAAGTTCTCCT 59.519 40.000 0.00 0.00 0.00 3.69
4733 5479 5.721232 TCTGAAGACGGAATAAAGTTCTCC 58.279 41.667 0.00 0.00 0.00 3.71
4734 5480 6.622549 TCTCTGAAGACGGAATAAAGTTCTC 58.377 40.000 0.00 0.00 0.00 2.87
4735 5481 6.591750 TCTCTGAAGACGGAATAAAGTTCT 57.408 37.500 0.00 0.00 0.00 3.01
4736 5482 5.289917 GCTCTCTGAAGACGGAATAAAGTTC 59.710 44.000 0.00 0.00 0.00 3.01
4737 5483 5.172205 GCTCTCTGAAGACGGAATAAAGTT 58.828 41.667 0.00 0.00 0.00 2.66
4738 5484 4.382147 GGCTCTCTGAAGACGGAATAAAGT 60.382 45.833 0.00 0.00 0.00 2.66
4739 5485 4.116238 GGCTCTCTGAAGACGGAATAAAG 58.884 47.826 0.00 0.00 0.00 1.85
4740 5486 3.428999 CGGCTCTCTGAAGACGGAATAAA 60.429 47.826 7.06 0.00 44.22 1.40
4741 5487 2.099263 CGGCTCTCTGAAGACGGAATAA 59.901 50.000 7.06 0.00 44.22 1.40
4742 5488 1.676529 CGGCTCTCTGAAGACGGAATA 59.323 52.381 7.06 0.00 44.22 1.75
4743 5489 0.457851 CGGCTCTCTGAAGACGGAAT 59.542 55.000 7.06 0.00 44.22 3.01
4744 5490 1.883732 CGGCTCTCTGAAGACGGAA 59.116 57.895 7.06 0.00 44.22 4.30
4745 5491 3.592070 CGGCTCTCTGAAGACGGA 58.408 61.111 7.06 0.00 44.22 4.69
4748 5494 2.202676 CGGCGGCTCTCTGAAGAC 60.203 66.667 7.61 0.00 0.00 3.01
4749 5495 4.135153 GCGGCGGCTCTCTGAAGA 62.135 66.667 9.78 0.00 35.83 2.87
4768 5514 2.217038 ATCTGTGTCGCCACCAGGT 61.217 57.895 0.00 0.00 41.09 4.00
4769 5515 1.742880 CATCTGTGTCGCCACCAGG 60.743 63.158 0.00 0.00 41.09 4.45
4770 5516 1.004560 ACATCTGTGTCGCCACCAG 60.005 57.895 0.00 0.00 41.09 4.00
4771 5517 1.301637 CACATCTGTGTCGCCACCA 60.302 57.895 0.00 0.00 41.09 4.17
4772 5518 0.602638 TTCACATCTGTGTCGCCACC 60.603 55.000 9.96 0.00 45.76 4.61
4773 5519 1.195448 CTTTCACATCTGTGTCGCCAC 59.805 52.381 9.96 0.00 45.76 5.01
4774 5520 1.069978 TCTTTCACATCTGTGTCGCCA 59.930 47.619 9.96 0.00 45.76 5.69
4775 5521 1.795768 TCTTTCACATCTGTGTCGCC 58.204 50.000 9.96 0.00 45.76 5.54
4776 5522 3.433274 TGATTCTTTCACATCTGTGTCGC 59.567 43.478 9.96 0.00 45.76 5.19
4777 5523 5.390251 CCTTGATTCTTTCACATCTGTGTCG 60.390 44.000 9.96 1.24 45.76 4.35
4778 5524 5.106396 CCCTTGATTCTTTCACATCTGTGTC 60.106 44.000 9.96 0.71 45.76 3.67
4779 5525 4.763793 CCCTTGATTCTTTCACATCTGTGT 59.236 41.667 9.96 0.00 45.76 3.72
4780 5526 5.005740 TCCCTTGATTCTTTCACATCTGTG 58.994 41.667 3.90 3.90 46.91 3.66
4781 5527 5.246981 TCCCTTGATTCTTTCACATCTGT 57.753 39.130 0.00 0.00 32.84 3.41
4782 5528 5.067413 CCATCCCTTGATTCTTTCACATCTG 59.933 44.000 0.00 0.00 32.84 2.90
4783 5529 5.198965 CCATCCCTTGATTCTTTCACATCT 58.801 41.667 0.00 0.00 32.84 2.90
4784 5530 4.340381 CCCATCCCTTGATTCTTTCACATC 59.660 45.833 0.00 0.00 32.84 3.06
4785 5531 4.017222 TCCCATCCCTTGATTCTTTCACAT 60.017 41.667 0.00 0.00 32.84 3.21
4786 5532 3.333381 TCCCATCCCTTGATTCTTTCACA 59.667 43.478 0.00 0.00 32.84 3.58
4787 5533 3.968265 TCCCATCCCTTGATTCTTTCAC 58.032 45.455 0.00 0.00 32.84 3.18
4788 5534 4.886755 ATCCCATCCCTTGATTCTTTCA 57.113 40.909 0.00 0.00 0.00 2.69
4789 5535 6.192970 TCTATCCCATCCCTTGATTCTTTC 57.807 41.667 0.00 0.00 0.00 2.62
4790 5536 6.468359 CCATCTATCCCATCCCTTGATTCTTT 60.468 42.308 0.00 0.00 0.00 2.52
4791 5537 5.014966 CCATCTATCCCATCCCTTGATTCTT 59.985 44.000 0.00 0.00 0.00 2.52
4792 5538 4.539293 CCATCTATCCCATCCCTTGATTCT 59.461 45.833 0.00 0.00 0.00 2.40
4793 5539 4.853007 CCATCTATCCCATCCCTTGATTC 58.147 47.826 0.00 0.00 0.00 2.52
4794 5540 3.011032 GCCATCTATCCCATCCCTTGATT 59.989 47.826 0.00 0.00 0.00 2.57
4795 5541 2.579860 GCCATCTATCCCATCCCTTGAT 59.420 50.000 0.00 0.00 0.00 2.57
4796 5542 1.988107 GCCATCTATCCCATCCCTTGA 59.012 52.381 0.00 0.00 0.00 3.02
4797 5543 1.991070 AGCCATCTATCCCATCCCTTG 59.009 52.381 0.00 0.00 0.00 3.61
4798 5544 2.377869 CAAGCCATCTATCCCATCCCTT 59.622 50.000 0.00 0.00 0.00 3.95
4799 5545 1.991070 CAAGCCATCTATCCCATCCCT 59.009 52.381 0.00 0.00 0.00 4.20
4800 5546 1.005215 CCAAGCCATCTATCCCATCCC 59.995 57.143 0.00 0.00 0.00 3.85
4801 5547 1.707427 ACCAAGCCATCTATCCCATCC 59.293 52.381 0.00 0.00 0.00 3.51
4802 5548 2.373169 TGACCAAGCCATCTATCCCATC 59.627 50.000 0.00 0.00 0.00 3.51
4803 5549 2.421725 TGACCAAGCCATCTATCCCAT 58.578 47.619 0.00 0.00 0.00 4.00
4804 5550 1.891933 TGACCAAGCCATCTATCCCA 58.108 50.000 0.00 0.00 0.00 4.37
4805 5551 3.297134 TTTGACCAAGCCATCTATCCC 57.703 47.619 0.00 0.00 0.00 3.85
4806 5552 4.889409 TCAATTTGACCAAGCCATCTATCC 59.111 41.667 0.00 0.00 0.00 2.59
4807 5553 6.444633 CATCAATTTGACCAAGCCATCTATC 58.555 40.000 0.15 0.00 0.00 2.08
4808 5554 5.303589 CCATCAATTTGACCAAGCCATCTAT 59.696 40.000 0.15 0.00 0.00 1.98
4809 5555 4.646040 CCATCAATTTGACCAAGCCATCTA 59.354 41.667 0.15 0.00 0.00 1.98
4810 5556 3.449737 CCATCAATTTGACCAAGCCATCT 59.550 43.478 0.15 0.00 0.00 2.90
4811 5557 3.788937 CCATCAATTTGACCAAGCCATC 58.211 45.455 0.15 0.00 0.00 3.51
4812 5558 2.093341 GCCATCAATTTGACCAAGCCAT 60.093 45.455 0.15 0.00 0.00 4.40
4813 5559 1.275856 GCCATCAATTTGACCAAGCCA 59.724 47.619 0.15 0.00 0.00 4.75
4814 5560 2.014335 GCCATCAATTTGACCAAGCC 57.986 50.000 0.15 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.