Multiple sequence alignment - TraesCS2D01G033400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G033400 chr2D 100.000 5678 0 0 1 5678 12903158 12908835 0.000000e+00 10486.0
1 TraesCS2D01G033400 chr2D 91.358 81 6 1 10 89 250630806 250630726 6.010000e-20 110.0
2 TraesCS2D01G033400 chr2B 96.409 4456 156 3 546 4997 23648621 23653076 0.000000e+00 7339.0
3 TraesCS2D01G033400 chr2B 83.682 2721 429 13 1440 4154 46890847 46893558 0.000000e+00 2551.0
4 TraesCS2D01G033400 chr2B 83.364 2723 441 10 1440 4158 47154982 47157696 0.000000e+00 2508.0
5 TraesCS2D01G033400 chr2B 95.690 348 12 3 5328 5675 23663215 23663559 1.790000e-154 556.0
6 TraesCS2D01G033400 chr2B 93.314 344 22 1 4995 5337 23662841 23663184 1.830000e-139 507.0
7 TraesCS2D01G033400 chr2B 91.257 183 7 6 372 550 23648303 23648480 2.040000e-59 241.0
8 TraesCS2D01G033400 chr2A 71.092 1062 251 49 2999 4032 764310865 764311898 5.760000e-50 209.0
9 TraesCS2D01G033400 chr7A 73.958 384 88 12 3010 3387 25924296 25923919 1.650000e-30 145.0
10 TraesCS2D01G033400 chr6D 90.411 73 7 0 10 82 453482802 453482730 4.680000e-16 97.1
11 TraesCS2D01G033400 chr6D 91.228 57 5 0 25 81 85815345 85815289 1.700000e-10 78.7
12 TraesCS2D01G033400 chr7B 85.366 82 10 2 10 89 130828386 130828467 3.650000e-12 84.2
13 TraesCS2D01G033400 chr7D 88.406 69 6 2 23 89 478078535 478078603 1.310000e-11 82.4
14 TraesCS2D01G033400 chr5A 83.529 85 12 2 10 93 485468086 485468003 1.700000e-10 78.7
15 TraesCS2D01G033400 chr1D 92.593 54 3 1 39 91 486005979 486006032 6.100000e-10 76.8
16 TraesCS2D01G033400 chr1B 82.955 88 10 3 10 92 592646726 592646639 2.190000e-09 75.0
17 TraesCS2D01G033400 chr5D 81.928 83 10 5 10 90 300759117 300759196 1.320000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G033400 chr2D 12903158 12908835 5677 False 10486.0 10486 100.000 1 5678 1 chr2D.!!$F1 5677
1 TraesCS2D01G033400 chr2B 23648303 23653076 4773 False 3790.0 7339 93.833 372 4997 2 chr2B.!!$F3 4625
2 TraesCS2D01G033400 chr2B 46890847 46893558 2711 False 2551.0 2551 83.682 1440 4154 1 chr2B.!!$F1 2714
3 TraesCS2D01G033400 chr2B 47154982 47157696 2714 False 2508.0 2508 83.364 1440 4158 1 chr2B.!!$F2 2718
4 TraesCS2D01G033400 chr2B 23662841 23663559 718 False 531.5 556 94.502 4995 5675 2 chr2B.!!$F4 680
5 TraesCS2D01G033400 chr2A 764310865 764311898 1033 False 209.0 209 71.092 2999 4032 1 chr2A.!!$F1 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.037590 AGTGCAAGTAATTGCCGGGA 59.962 50.0 23.74 0.0 46.82 5.14 F
1200 1351 0.038159 CACACTTCTCCGACCCTGAC 60.038 60.0 0.00 0.0 0.00 3.51 F
1215 1366 0.179187 CTGACGGAGCACTACACTCG 60.179 60.0 0.00 0.0 34.87 4.18 F
1714 1865 0.673644 AGGGATCGGTTTGCTTCACG 60.674 55.0 0.00 0.0 0.00 4.35 F
2058 2209 0.965363 CAGGGGAAATTCCACCCACG 60.965 60.0 11.24 0.0 42.28 4.94 F
2863 3014 0.529992 CGGTTCCATACCTTCGAGCC 60.530 60.0 0.00 0.0 45.40 4.70 F
3615 3766 0.323629 CAAACCTAGTTGGCTCGGGA 59.676 55.0 0.00 0.0 40.22 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1568 0.259065 TATCTGAGTCGGGTCAGGCT 59.741 55.000 13.07 5.92 43.69 4.58 R
2043 2194 1.379527 CTAGCGTGGGTGGAATTTCC 58.620 55.000 8.59 8.59 36.96 3.13 R
2847 2998 1.687123 GCTAGGCTCGAAGGTATGGAA 59.313 52.381 0.00 0.00 0.00 3.53 R
2863 3014 2.997986 CCAAATTTTTGCAGCCTGCTAG 59.002 45.455 18.96 0.00 45.31 3.42 R
3612 3763 5.479124 TGTAGACTACTCCAAAACTTCCC 57.521 43.478 13.67 0.00 0.00 3.97 R
4317 4472 1.000163 CTGTAGACGTCACCTGCAGTT 60.000 52.381 19.50 0.00 38.83 3.16 R
5230 5387 0.036022 GAGCTAGGGGCATGTCCATC 59.964 60.000 20.13 0.78 44.79 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.239551 AGTGAATCTACAATACGGCTATATACA 57.760 33.333 0.00 0.00 0.00 2.29
43 44 9.064706 ACGGCTATATACATATGTATGTAGTCC 57.935 37.037 34.71 32.96 45.94 3.85
44 45 8.228464 CGGCTATATACATATGTATGTAGTCCG 58.772 40.741 37.67 37.67 45.94 4.79
52 53 8.173542 ACATATGTATGTAGTCCGTATTGACA 57.826 34.615 6.56 0.00 44.54 3.58
53 54 8.803235 ACATATGTATGTAGTCCGTATTGACAT 58.197 33.333 6.56 0.00 44.54 3.06
54 55 9.290483 CATATGTATGTAGTCCGTATTGACATC 57.710 37.037 0.00 0.00 37.73 3.06
55 56 6.954487 TGTATGTAGTCCGTATTGACATCT 57.046 37.500 0.00 0.00 37.73 2.90
56 57 6.967135 TGTATGTAGTCCGTATTGACATCTC 58.033 40.000 0.00 0.00 37.73 2.75
57 58 6.771267 TGTATGTAGTCCGTATTGACATCTCT 59.229 38.462 0.00 0.00 37.73 3.10
58 59 7.935210 TGTATGTAGTCCGTATTGACATCTCTA 59.065 37.037 0.00 0.00 37.73 2.43
59 60 7.818997 ATGTAGTCCGTATTGACATCTCTAA 57.181 36.000 0.00 0.00 37.73 2.10
60 61 7.634671 TGTAGTCCGTATTGACATCTCTAAA 57.365 36.000 0.00 0.00 37.73 1.85
61 62 8.058667 TGTAGTCCGTATTGACATCTCTAAAA 57.941 34.615 0.00 0.00 37.73 1.52
62 63 8.525316 TGTAGTCCGTATTGACATCTCTAAAAA 58.475 33.333 0.00 0.00 37.73 1.94
63 64 9.021863 GTAGTCCGTATTGACATCTCTAAAAAG 57.978 37.037 0.00 0.00 37.73 2.27
64 65 7.042335 AGTCCGTATTGACATCTCTAAAAAGG 58.958 38.462 0.00 0.00 37.73 3.11
65 66 5.815740 TCCGTATTGACATCTCTAAAAAGGC 59.184 40.000 0.00 0.00 0.00 4.35
66 67 5.817816 CCGTATTGACATCTCTAAAAAGGCT 59.182 40.000 0.00 0.00 0.00 4.58
67 68 6.316390 CCGTATTGACATCTCTAAAAAGGCTT 59.684 38.462 0.00 0.00 0.00 4.35
68 69 7.494625 CCGTATTGACATCTCTAAAAAGGCTTA 59.505 37.037 0.00 0.00 0.00 3.09
69 70 9.046296 CGTATTGACATCTCTAAAAAGGCTTAT 57.954 33.333 0.00 0.00 0.00 1.73
71 72 8.814038 ATTGACATCTCTAAAAAGGCTTATGT 57.186 30.769 8.80 8.80 0.00 2.29
72 73 8.635765 TTGACATCTCTAAAAAGGCTTATGTT 57.364 30.769 0.00 0.00 0.00 2.71
73 74 8.635765 TGACATCTCTAAAAAGGCTTATGTTT 57.364 30.769 0.00 0.00 0.00 2.83
74 75 9.733556 TGACATCTCTAAAAAGGCTTATGTTTA 57.266 29.630 0.00 1.24 0.00 2.01
76 77 9.959721 ACATCTCTAAAAAGGCTTATGTTTAGA 57.040 29.630 22.10 22.10 39.22 2.10
80 81 9.543018 CTCTAAAAAGGCTTATGTTTAGAAACG 57.457 33.333 22.99 13.87 40.33 3.60
81 82 8.508875 TCTAAAAAGGCTTATGTTTAGAAACGG 58.491 33.333 21.64 4.97 38.81 4.44
82 83 5.638596 AAAGGCTTATGTTTAGAAACGGG 57.361 39.130 0.00 0.00 41.74 5.28
83 84 3.617284 AGGCTTATGTTTAGAAACGGGG 58.383 45.455 0.97 0.00 41.74 5.73
84 85 2.686405 GGCTTATGTTTAGAAACGGGGG 59.314 50.000 0.97 0.00 41.74 5.40
85 86 3.613030 GCTTATGTTTAGAAACGGGGGA 58.387 45.455 0.97 0.00 41.74 4.81
86 87 3.626217 GCTTATGTTTAGAAACGGGGGAG 59.374 47.826 0.97 0.00 41.74 4.30
87 88 4.840271 CTTATGTTTAGAAACGGGGGAGT 58.160 43.478 0.97 0.00 41.74 3.85
88 89 5.627503 GCTTATGTTTAGAAACGGGGGAGTA 60.628 44.000 0.97 0.00 41.74 2.59
89 90 3.683365 TGTTTAGAAACGGGGGAGTAC 57.317 47.619 0.97 0.00 41.74 2.73
90 91 2.971330 TGTTTAGAAACGGGGGAGTACA 59.029 45.455 0.00 0.00 41.74 2.90
91 92 3.583966 TGTTTAGAAACGGGGGAGTACAT 59.416 43.478 0.00 0.00 41.74 2.29
92 93 4.041938 TGTTTAGAAACGGGGGAGTACATT 59.958 41.667 0.00 0.00 41.74 2.71
93 94 2.781681 AGAAACGGGGGAGTACATTG 57.218 50.000 0.00 0.00 0.00 2.82
94 95 1.982958 AGAAACGGGGGAGTACATTGT 59.017 47.619 0.00 0.00 0.00 2.71
95 96 3.175594 AGAAACGGGGGAGTACATTGTA 58.824 45.455 0.00 0.00 0.00 2.41
96 97 3.583966 AGAAACGGGGGAGTACATTGTAA 59.416 43.478 0.00 0.00 0.00 2.41
97 98 4.041938 AGAAACGGGGGAGTACATTGTAAA 59.958 41.667 0.00 0.00 0.00 2.01
98 99 3.622166 ACGGGGGAGTACATTGTAAAG 57.378 47.619 0.00 0.00 0.00 1.85
99 100 2.908351 ACGGGGGAGTACATTGTAAAGT 59.092 45.455 0.00 0.00 0.00 2.66
100 101 3.267483 CGGGGGAGTACATTGTAAAGTG 58.733 50.000 0.00 0.00 0.00 3.16
101 102 3.055675 CGGGGGAGTACATTGTAAAGTGA 60.056 47.826 0.00 0.00 0.00 3.41
102 103 4.383770 CGGGGGAGTACATTGTAAAGTGAT 60.384 45.833 0.00 0.00 0.00 3.06
103 104 5.506708 GGGGGAGTACATTGTAAAGTGATT 58.493 41.667 0.00 0.00 0.00 2.57
104 105 5.357032 GGGGGAGTACATTGTAAAGTGATTG 59.643 44.000 0.00 0.00 0.00 2.67
105 106 5.163652 GGGGAGTACATTGTAAAGTGATTGC 60.164 44.000 0.00 0.00 0.00 3.56
106 107 5.447279 GGGAGTACATTGTAAAGTGATTGCG 60.447 44.000 0.00 0.00 0.00 4.85
107 108 4.969816 AGTACATTGTAAAGTGATTGCGC 58.030 39.130 0.00 0.00 0.00 6.09
108 109 2.850321 ACATTGTAAAGTGATTGCGCG 58.150 42.857 0.00 0.00 0.00 6.86
109 110 2.225491 ACATTGTAAAGTGATTGCGCGT 59.775 40.909 8.43 0.00 0.00 6.01
110 111 2.308347 TTGTAAAGTGATTGCGCGTG 57.692 45.000 8.43 0.00 0.00 5.34
111 112 1.503294 TGTAAAGTGATTGCGCGTGA 58.497 45.000 8.43 0.00 0.00 4.35
112 113 1.459209 TGTAAAGTGATTGCGCGTGAG 59.541 47.619 8.43 0.00 0.00 3.51
124 125 2.571757 CGTGAGCCCGACTAGCAA 59.428 61.111 0.00 0.00 0.00 3.91
125 126 1.805945 CGTGAGCCCGACTAGCAAC 60.806 63.158 0.00 0.00 0.00 4.17
126 127 1.805945 GTGAGCCCGACTAGCAACG 60.806 63.158 0.00 0.00 0.00 4.10
128 129 2.995574 AGCCCGACTAGCAACGGT 60.996 61.111 17.79 3.05 46.53 4.83
129 130 1.660560 GAGCCCGACTAGCAACGGTA 61.661 60.000 17.79 0.00 46.53 4.02
130 131 1.041447 AGCCCGACTAGCAACGGTAT 61.041 55.000 17.79 7.18 46.53 2.73
131 132 0.596859 GCCCGACTAGCAACGGTATC 60.597 60.000 17.79 7.16 46.53 2.24
132 133 1.030457 CCCGACTAGCAACGGTATCT 58.970 55.000 17.79 0.00 46.53 1.98
133 134 2.224606 CCCGACTAGCAACGGTATCTA 58.775 52.381 17.79 0.00 46.53 1.98
134 135 2.031333 CCCGACTAGCAACGGTATCTAC 60.031 54.545 17.79 0.00 46.53 2.59
135 136 2.615447 CCGACTAGCAACGGTATCTACA 59.385 50.000 13.17 0.00 43.53 2.74
136 137 3.303857 CCGACTAGCAACGGTATCTACAG 60.304 52.174 13.17 0.00 43.53 2.74
137 138 3.311871 CGACTAGCAACGGTATCTACAGT 59.688 47.826 0.00 0.00 36.18 3.55
138 139 4.201891 CGACTAGCAACGGTATCTACAGTT 60.202 45.833 0.82 0.82 43.56 3.16
139 140 5.648572 GACTAGCAACGGTATCTACAGTTT 58.351 41.667 3.57 0.00 41.46 2.66
140 141 6.457392 CGACTAGCAACGGTATCTACAGTTTA 60.457 42.308 3.57 0.00 41.46 2.01
141 142 7.344095 ACTAGCAACGGTATCTACAGTTTAT 57.656 36.000 3.57 0.00 41.46 1.40
142 143 7.201145 ACTAGCAACGGTATCTACAGTTTATG 58.799 38.462 3.57 0.00 41.46 1.90
143 144 4.809426 AGCAACGGTATCTACAGTTTATGC 59.191 41.667 3.57 5.69 41.46 3.14
144 145 4.317839 GCAACGGTATCTACAGTTTATGCG 60.318 45.833 3.57 0.00 41.46 4.73
145 146 3.973657 ACGGTATCTACAGTTTATGCGG 58.026 45.455 0.00 0.00 30.50 5.69
146 147 3.243636 ACGGTATCTACAGTTTATGCGGG 60.244 47.826 0.00 0.00 30.50 6.13
147 148 3.064931 GGTATCTACAGTTTATGCGGGC 58.935 50.000 0.00 0.00 0.00 6.13
148 149 1.865865 ATCTACAGTTTATGCGGGCG 58.134 50.000 0.00 0.00 0.00 6.13
149 150 0.179094 TCTACAGTTTATGCGGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
150 151 0.461339 CTACAGTTTATGCGGGCGGT 60.461 55.000 0.00 0.00 0.00 5.68
151 152 0.741574 TACAGTTTATGCGGGCGGTG 60.742 55.000 0.00 0.00 0.00 4.94
152 153 2.038269 CAGTTTATGCGGGCGGTGT 61.038 57.895 0.00 0.00 0.00 4.16
153 154 2.038269 AGTTTATGCGGGCGGTGTG 61.038 57.895 0.00 0.00 0.00 3.82
154 155 2.036006 GTTTATGCGGGCGGTGTGA 61.036 57.895 0.00 0.00 0.00 3.58
155 156 1.302591 TTTATGCGGGCGGTGTGAA 60.303 52.632 0.00 0.00 0.00 3.18
156 157 0.889638 TTTATGCGGGCGGTGTGAAA 60.890 50.000 0.00 0.00 0.00 2.69
157 158 0.889638 TTATGCGGGCGGTGTGAAAA 60.890 50.000 0.00 0.00 0.00 2.29
158 159 1.302383 TATGCGGGCGGTGTGAAAAG 61.302 55.000 0.00 0.00 0.00 2.27
159 160 4.700365 GCGGGCGGTGTGAAAAGC 62.700 66.667 0.00 0.00 0.00 3.51
160 161 3.283684 CGGGCGGTGTGAAAAGCA 61.284 61.111 0.00 0.00 0.00 3.91
161 162 2.840066 CGGGCGGTGTGAAAAGCAA 61.840 57.895 0.00 0.00 0.00 3.91
162 163 1.665442 GGGCGGTGTGAAAAGCAAT 59.335 52.632 0.00 0.00 0.00 3.56
163 164 0.388520 GGGCGGTGTGAAAAGCAATC 60.389 55.000 0.00 0.00 0.00 2.67
164 165 0.313672 GGCGGTGTGAAAAGCAATCA 59.686 50.000 0.00 0.00 0.00 2.57
165 166 1.067635 GGCGGTGTGAAAAGCAATCAT 60.068 47.619 0.00 0.00 0.00 2.45
166 167 2.253603 GCGGTGTGAAAAGCAATCATC 58.746 47.619 0.00 0.00 0.00 2.92
167 168 2.867429 CGGTGTGAAAAGCAATCATCC 58.133 47.619 0.00 0.00 0.00 3.51
168 169 2.228582 CGGTGTGAAAAGCAATCATCCA 59.771 45.455 0.00 0.00 0.00 3.41
169 170 3.578688 GGTGTGAAAAGCAATCATCCAC 58.421 45.455 0.00 0.00 0.00 4.02
170 171 3.256631 GGTGTGAAAAGCAATCATCCACT 59.743 43.478 0.00 0.00 29.46 4.00
171 172 4.232221 GTGTGAAAAGCAATCATCCACTG 58.768 43.478 0.00 0.00 0.00 3.66
172 173 4.022935 GTGTGAAAAGCAATCATCCACTGA 60.023 41.667 0.00 0.00 38.53 3.41
173 174 4.216902 TGTGAAAAGCAATCATCCACTGAG 59.783 41.667 0.00 0.00 37.28 3.35
174 175 3.192001 TGAAAAGCAATCATCCACTGAGC 59.808 43.478 0.00 0.00 37.28 4.26
175 176 2.803030 AAGCAATCATCCACTGAGCT 57.197 45.000 0.00 0.00 37.07 4.09
176 177 2.803030 AGCAATCATCCACTGAGCTT 57.197 45.000 0.00 0.00 37.28 3.74
177 178 2.366533 AGCAATCATCCACTGAGCTTG 58.633 47.619 0.00 0.00 37.28 4.01
178 179 2.026542 AGCAATCATCCACTGAGCTTGA 60.027 45.455 0.00 0.00 37.28 3.02
179 180 2.097142 GCAATCATCCACTGAGCTTGAC 59.903 50.000 0.00 0.00 37.28 3.18
180 181 3.340928 CAATCATCCACTGAGCTTGACA 58.659 45.455 0.00 0.00 37.28 3.58
181 182 2.756840 TCATCCACTGAGCTTGACAG 57.243 50.000 0.00 0.00 40.68 3.51
188 189 3.498774 ACTGAGCTTGACAGTGGATTT 57.501 42.857 5.79 0.00 45.19 2.17
189 190 3.144506 ACTGAGCTTGACAGTGGATTTG 58.855 45.455 5.79 0.00 45.19 2.32
190 191 2.486982 CTGAGCTTGACAGTGGATTTGG 59.513 50.000 0.00 0.00 0.00 3.28
191 192 2.106338 TGAGCTTGACAGTGGATTTGGA 59.894 45.455 0.00 0.00 0.00 3.53
192 193 3.149196 GAGCTTGACAGTGGATTTGGAA 58.851 45.455 0.00 0.00 0.00 3.53
193 194 3.152341 AGCTTGACAGTGGATTTGGAAG 58.848 45.455 0.00 0.00 0.00 3.46
194 195 2.352127 GCTTGACAGTGGATTTGGAAGC 60.352 50.000 0.00 0.00 32.01 3.86
195 196 1.522668 TGACAGTGGATTTGGAAGCG 58.477 50.000 0.00 0.00 0.00 4.68
196 197 1.202758 TGACAGTGGATTTGGAAGCGT 60.203 47.619 0.00 0.00 0.00 5.07
197 198 1.880027 GACAGTGGATTTGGAAGCGTT 59.120 47.619 0.00 0.00 0.00 4.84
198 199 1.608590 ACAGTGGATTTGGAAGCGTTG 59.391 47.619 0.00 0.00 0.00 4.10
199 200 0.598065 AGTGGATTTGGAAGCGTTGC 59.402 50.000 0.00 0.00 0.00 4.17
200 201 0.598065 GTGGATTTGGAAGCGTTGCT 59.402 50.000 0.00 0.00 42.56 3.91
201 202 0.597568 TGGATTTGGAAGCGTTGCTG 59.402 50.000 0.00 0.00 39.62 4.41
202 203 0.109132 GGATTTGGAAGCGTTGCTGG 60.109 55.000 0.00 0.00 39.62 4.85
203 204 0.109132 GATTTGGAAGCGTTGCTGGG 60.109 55.000 0.00 0.00 39.62 4.45
204 205 0.539438 ATTTGGAAGCGTTGCTGGGA 60.539 50.000 0.00 0.00 39.62 4.37
205 206 0.539438 TTTGGAAGCGTTGCTGGGAT 60.539 50.000 0.00 0.00 39.62 3.85
206 207 0.326595 TTGGAAGCGTTGCTGGGATA 59.673 50.000 0.00 0.00 39.62 2.59
207 208 0.107703 TGGAAGCGTTGCTGGGATAG 60.108 55.000 0.00 0.00 39.62 2.08
208 209 0.107654 GGAAGCGTTGCTGGGATAGT 60.108 55.000 0.00 0.00 39.62 2.12
209 210 1.009829 GAAGCGTTGCTGGGATAGTG 58.990 55.000 0.00 0.00 39.62 2.74
210 211 1.026718 AAGCGTTGCTGGGATAGTGC 61.027 55.000 0.00 0.00 39.62 4.40
211 212 1.745115 GCGTTGCTGGGATAGTGCA 60.745 57.895 0.00 0.00 34.69 4.57
212 213 1.305219 GCGTTGCTGGGATAGTGCAA 61.305 55.000 0.00 0.00 43.25 4.08
213 214 0.729116 CGTTGCTGGGATAGTGCAAG 59.271 55.000 0.00 0.00 45.55 4.01
214 215 1.826385 GTTGCTGGGATAGTGCAAGT 58.174 50.000 0.00 0.00 45.55 3.16
215 216 2.676750 CGTTGCTGGGATAGTGCAAGTA 60.677 50.000 0.00 0.00 45.55 2.24
216 217 3.343617 GTTGCTGGGATAGTGCAAGTAA 58.656 45.455 0.00 0.00 45.55 2.24
217 218 3.931907 TGCTGGGATAGTGCAAGTAAT 57.068 42.857 0.00 0.00 33.48 1.89
218 219 4.235079 TGCTGGGATAGTGCAAGTAATT 57.765 40.909 0.00 0.00 33.48 1.40
219 220 3.947196 TGCTGGGATAGTGCAAGTAATTG 59.053 43.478 0.00 0.00 33.48 2.32
221 222 3.287222 TGGGATAGTGCAAGTAATTGCC 58.713 45.455 23.74 15.19 46.82 4.52
222 223 2.290641 GGGATAGTGCAAGTAATTGCCG 59.709 50.000 23.74 0.00 46.82 5.69
223 224 2.290641 GGATAGTGCAAGTAATTGCCGG 59.709 50.000 23.74 0.00 46.82 6.13
224 225 1.745232 TAGTGCAAGTAATTGCCGGG 58.255 50.000 23.74 0.00 46.82 5.73
225 226 0.037590 AGTGCAAGTAATTGCCGGGA 59.962 50.000 23.74 0.00 46.82 5.14
226 227 0.885196 GTGCAAGTAATTGCCGGGAA 59.115 50.000 23.74 12.06 46.82 3.97
227 228 1.271102 GTGCAAGTAATTGCCGGGAAA 59.729 47.619 23.74 2.35 46.82 3.13
228 229 1.543802 TGCAAGTAATTGCCGGGAAAG 59.456 47.619 23.74 0.00 46.82 2.62
229 230 1.816224 GCAAGTAATTGCCGGGAAAGA 59.184 47.619 14.07 0.00 41.85 2.52
230 231 2.427095 GCAAGTAATTGCCGGGAAAGAT 59.573 45.455 14.07 4.80 41.85 2.40
231 232 3.630312 GCAAGTAATTGCCGGGAAAGATA 59.370 43.478 14.07 3.72 41.85 1.98
232 233 4.261197 GCAAGTAATTGCCGGGAAAGATAG 60.261 45.833 14.07 2.74 41.85 2.08
233 234 4.772886 AGTAATTGCCGGGAAAGATAGT 57.227 40.909 14.07 6.76 0.00 2.12
234 235 4.451900 AGTAATTGCCGGGAAAGATAGTG 58.548 43.478 14.07 0.00 0.00 2.74
235 236 1.680338 ATTGCCGGGAAAGATAGTGC 58.320 50.000 14.07 0.00 0.00 4.40
236 237 0.742990 TTGCCGGGAAAGATAGTGCG 60.743 55.000 5.67 0.00 0.00 5.34
237 238 2.534903 GCCGGGAAAGATAGTGCGC 61.535 63.158 2.18 0.00 0.00 6.09
238 239 1.144057 CCGGGAAAGATAGTGCGCT 59.856 57.895 9.73 4.58 0.00 5.92
239 240 0.462047 CCGGGAAAGATAGTGCGCTT 60.462 55.000 9.73 0.00 0.00 4.68
240 241 1.369625 CGGGAAAGATAGTGCGCTTT 58.630 50.000 9.73 0.00 37.07 3.51
241 242 1.327764 CGGGAAAGATAGTGCGCTTTC 59.672 52.381 9.73 7.45 45.68 2.62
244 245 1.327764 GAAAGATAGTGCGCTTTCCCG 59.672 52.381 9.73 0.00 42.45 5.14
252 253 2.972505 CGCTTTCCCGCAGTGTGT 60.973 61.111 2.46 0.00 0.00 3.72
253 254 2.542907 CGCTTTCCCGCAGTGTGTT 61.543 57.895 2.46 0.00 0.00 3.32
254 255 1.733526 GCTTTCCCGCAGTGTGTTT 59.266 52.632 2.46 0.00 0.00 2.83
255 256 0.317854 GCTTTCCCGCAGTGTGTTTC 60.318 55.000 2.46 0.00 0.00 2.78
256 257 0.041312 CTTTCCCGCAGTGTGTTTCG 60.041 55.000 2.46 0.00 0.00 3.46
257 258 0.745128 TTTCCCGCAGTGTGTTTCGT 60.745 50.000 2.46 0.00 0.00 3.85
258 259 1.433053 TTCCCGCAGTGTGTTTCGTG 61.433 55.000 2.46 0.00 0.00 4.35
259 260 1.885388 CCCGCAGTGTGTTTCGTGA 60.885 57.895 2.46 0.00 0.00 4.35
260 261 1.275657 CCGCAGTGTGTTTCGTGAC 59.724 57.895 2.46 0.00 0.00 3.67
261 262 1.084290 CGCAGTGTGTTTCGTGACG 60.084 57.895 0.00 0.00 0.00 4.35
262 263 1.748647 CGCAGTGTGTTTCGTGACGT 61.749 55.000 4.40 0.00 0.00 4.34
263 264 0.315059 GCAGTGTGTTTCGTGACGTG 60.315 55.000 4.40 0.00 0.00 4.49
264 265 0.996462 CAGTGTGTTTCGTGACGTGT 59.004 50.000 4.40 0.00 0.00 4.49
265 266 0.996462 AGTGTGTTTCGTGACGTGTG 59.004 50.000 4.40 0.00 0.00 3.82
266 267 0.717224 GTGTGTTTCGTGACGTGTGT 59.283 50.000 4.40 0.00 0.00 3.72
267 268 0.716666 TGTGTTTCGTGACGTGTGTG 59.283 50.000 4.40 0.00 0.00 3.82
268 269 0.717224 GTGTTTCGTGACGTGTGTGT 59.283 50.000 4.40 0.00 0.00 3.72
269 270 1.127213 GTGTTTCGTGACGTGTGTGTT 59.873 47.619 4.40 0.00 0.00 3.32
270 271 1.127029 TGTTTCGTGACGTGTGTGTTG 59.873 47.619 4.40 0.00 0.00 3.33
271 272 1.390803 GTTTCGTGACGTGTGTGTTGA 59.609 47.619 4.40 0.00 0.00 3.18
272 273 1.929230 TTCGTGACGTGTGTGTTGAT 58.071 45.000 4.40 0.00 0.00 2.57
273 274 1.204792 TCGTGACGTGTGTGTTGATG 58.795 50.000 4.40 0.00 0.00 3.07
274 275 0.383002 CGTGACGTGTGTGTTGATGC 60.383 55.000 0.00 0.00 0.00 3.91
275 276 0.937304 GTGACGTGTGTGTTGATGCT 59.063 50.000 0.00 0.00 0.00 3.79
276 277 0.936600 TGACGTGTGTGTTGATGCTG 59.063 50.000 0.00 0.00 0.00 4.41
277 278 0.384725 GACGTGTGTGTTGATGCTGC 60.385 55.000 0.00 0.00 0.00 5.25
278 279 0.815213 ACGTGTGTGTTGATGCTGCT 60.815 50.000 0.00 0.00 0.00 4.24
279 280 0.385098 CGTGTGTGTTGATGCTGCTG 60.385 55.000 0.00 0.00 0.00 4.41
280 281 0.946528 GTGTGTGTTGATGCTGCTGA 59.053 50.000 0.00 0.00 0.00 4.26
281 282 1.538512 GTGTGTGTTGATGCTGCTGAT 59.461 47.619 0.00 0.00 0.00 2.90
282 283 1.538075 TGTGTGTTGATGCTGCTGATG 59.462 47.619 0.00 0.00 0.00 3.07
283 284 1.538512 GTGTGTTGATGCTGCTGATGT 59.461 47.619 0.00 0.00 0.00 3.06
284 285 2.743664 GTGTGTTGATGCTGCTGATGTA 59.256 45.455 0.00 0.00 0.00 2.29
285 286 3.376234 GTGTGTTGATGCTGCTGATGTAT 59.624 43.478 0.00 0.00 0.00 2.29
286 287 3.375922 TGTGTTGATGCTGCTGATGTATG 59.624 43.478 0.00 0.00 0.00 2.39
287 288 3.624410 GTGTTGATGCTGCTGATGTATGA 59.376 43.478 0.00 0.00 0.00 2.15
288 289 3.875134 TGTTGATGCTGCTGATGTATGAG 59.125 43.478 0.00 0.00 0.00 2.90
289 290 2.490991 TGATGCTGCTGATGTATGAGC 58.509 47.619 0.00 0.00 37.55 4.26
290 291 2.158871 TGATGCTGCTGATGTATGAGCA 60.159 45.455 5.90 5.90 44.62 4.26
291 292 2.406596 TGCTGCTGATGTATGAGCAA 57.593 45.000 7.39 0.00 45.99 3.91
292 293 2.927028 TGCTGCTGATGTATGAGCAAT 58.073 42.857 7.39 0.00 45.99 3.56
293 294 2.876550 TGCTGCTGATGTATGAGCAATC 59.123 45.455 7.39 3.62 45.99 2.67
294 295 3.139850 GCTGCTGATGTATGAGCAATCT 58.860 45.455 7.39 0.00 45.99 2.40
295 296 3.564644 GCTGCTGATGTATGAGCAATCTT 59.435 43.478 7.39 0.00 45.99 2.40
296 297 4.319622 GCTGCTGATGTATGAGCAATCTTC 60.320 45.833 7.39 0.00 45.99 2.87
297 298 4.773013 TGCTGATGTATGAGCAATCTTCA 58.227 39.130 3.50 0.00 43.88 3.02
298 299 5.187687 TGCTGATGTATGAGCAATCTTCAA 58.812 37.500 3.50 0.00 43.88 2.69
299 300 5.065602 TGCTGATGTATGAGCAATCTTCAAC 59.934 40.000 3.50 0.00 43.88 3.18
300 301 5.723492 TGATGTATGAGCAATCTTCAACG 57.277 39.130 0.00 0.00 0.00 4.10
301 302 5.418676 TGATGTATGAGCAATCTTCAACGA 58.581 37.500 0.00 0.00 0.00 3.85
302 303 5.521372 TGATGTATGAGCAATCTTCAACGAG 59.479 40.000 0.00 0.00 0.00 4.18
303 304 5.072040 TGTATGAGCAATCTTCAACGAGA 57.928 39.130 0.00 0.00 0.00 4.04
304 305 5.105063 TGTATGAGCAATCTTCAACGAGAG 58.895 41.667 0.00 0.00 0.00 3.20
305 306 2.341257 TGAGCAATCTTCAACGAGAGC 58.659 47.619 0.00 0.00 0.00 4.09
306 307 1.663135 GAGCAATCTTCAACGAGAGCC 59.337 52.381 0.00 0.00 0.00 4.70
307 308 1.002430 AGCAATCTTCAACGAGAGCCA 59.998 47.619 0.00 0.00 0.00 4.75
308 309 1.806542 GCAATCTTCAACGAGAGCCAA 59.193 47.619 0.00 0.00 0.00 4.52
309 310 2.413371 GCAATCTTCAACGAGAGCCAAC 60.413 50.000 0.00 0.00 0.00 3.77
310 311 3.070018 CAATCTTCAACGAGAGCCAACT 58.930 45.455 0.00 0.00 0.00 3.16
311 312 4.245660 CAATCTTCAACGAGAGCCAACTA 58.754 43.478 0.00 0.00 0.00 2.24
312 313 4.537135 ATCTTCAACGAGAGCCAACTAA 57.463 40.909 0.00 0.00 0.00 2.24
313 314 4.330944 TCTTCAACGAGAGCCAACTAAA 57.669 40.909 0.00 0.00 0.00 1.85
314 315 4.699637 TCTTCAACGAGAGCCAACTAAAA 58.300 39.130 0.00 0.00 0.00 1.52
315 316 5.305585 TCTTCAACGAGAGCCAACTAAAAT 58.694 37.500 0.00 0.00 0.00 1.82
316 317 6.460781 TCTTCAACGAGAGCCAACTAAAATA 58.539 36.000 0.00 0.00 0.00 1.40
317 318 6.932400 TCTTCAACGAGAGCCAACTAAAATAA 59.068 34.615 0.00 0.00 0.00 1.40
318 319 6.476243 TCAACGAGAGCCAACTAAAATAAC 57.524 37.500 0.00 0.00 0.00 1.89
319 320 5.992829 TCAACGAGAGCCAACTAAAATAACA 59.007 36.000 0.00 0.00 0.00 2.41
320 321 6.483974 TCAACGAGAGCCAACTAAAATAACAA 59.516 34.615 0.00 0.00 0.00 2.83
321 322 7.174253 TCAACGAGAGCCAACTAAAATAACAAT 59.826 33.333 0.00 0.00 0.00 2.71
322 323 6.842163 ACGAGAGCCAACTAAAATAACAATG 58.158 36.000 0.00 0.00 0.00 2.82
323 324 6.128007 ACGAGAGCCAACTAAAATAACAATGG 60.128 38.462 0.00 0.00 0.00 3.16
327 328 4.329801 GCCAACTAAAATAACAATGGCTGC 59.670 41.667 6.63 0.00 46.34 5.25
328 329 4.562394 CCAACTAAAATAACAATGGCTGCG 59.438 41.667 0.00 0.00 0.00 5.18
329 330 5.160641 CAACTAAAATAACAATGGCTGCGT 58.839 37.500 0.00 0.00 0.00 5.24
330 331 4.732784 ACTAAAATAACAATGGCTGCGTG 58.267 39.130 0.00 0.00 0.00 5.34
331 332 2.652941 AAATAACAATGGCTGCGTGG 57.347 45.000 0.00 0.00 0.00 4.94
332 333 1.832883 AATAACAATGGCTGCGTGGA 58.167 45.000 0.00 0.00 0.00 4.02
333 334 2.057137 ATAACAATGGCTGCGTGGAT 57.943 45.000 0.00 0.00 0.00 3.41
334 335 2.700722 TAACAATGGCTGCGTGGATA 57.299 45.000 0.00 0.00 0.00 2.59
335 336 1.382522 AACAATGGCTGCGTGGATAG 58.617 50.000 0.00 0.00 0.00 2.08
336 337 1.097547 ACAATGGCTGCGTGGATAGC 61.098 55.000 0.00 0.00 39.17 2.97
337 338 1.096967 CAATGGCTGCGTGGATAGCA 61.097 55.000 0.00 0.00 41.63 3.49
338 339 0.394216 AATGGCTGCGTGGATAGCAA 60.394 50.000 0.00 0.00 44.67 3.91
339 340 1.097547 ATGGCTGCGTGGATAGCAAC 61.098 55.000 0.00 0.00 44.67 4.17
340 341 2.472909 GGCTGCGTGGATAGCAACC 61.473 63.158 0.00 0.00 44.67 3.77
341 342 1.450312 GCTGCGTGGATAGCAACCT 60.450 57.895 0.00 0.00 44.67 3.50
342 343 1.432270 GCTGCGTGGATAGCAACCTC 61.432 60.000 0.00 0.00 44.67 3.85
343 344 0.108186 CTGCGTGGATAGCAACCTCA 60.108 55.000 0.00 0.00 44.67 3.86
344 345 0.323302 TGCGTGGATAGCAACCTCAA 59.677 50.000 0.00 0.00 42.18 3.02
345 346 1.271108 TGCGTGGATAGCAACCTCAAA 60.271 47.619 0.00 0.00 42.18 2.69
346 347 1.130561 GCGTGGATAGCAACCTCAAAC 59.869 52.381 0.00 0.00 34.19 2.93
347 348 2.699954 CGTGGATAGCAACCTCAAACT 58.300 47.619 0.00 0.00 0.00 2.66
348 349 2.416547 CGTGGATAGCAACCTCAAACTG 59.583 50.000 0.00 0.00 0.00 3.16
349 350 2.162408 GTGGATAGCAACCTCAAACTGC 59.838 50.000 0.00 0.00 36.29 4.40
351 352 2.421424 GGATAGCAACCTCAAACTGCTG 59.579 50.000 6.07 0.00 45.73 4.41
352 353 2.638480 TAGCAACCTCAAACTGCTGT 57.362 45.000 6.07 0.00 45.73 4.40
353 354 1.027357 AGCAACCTCAAACTGCTGTG 58.973 50.000 0.00 0.00 44.56 3.66
354 355 0.740737 GCAACCTCAAACTGCTGTGT 59.259 50.000 0.00 0.00 33.20 3.72
355 356 1.534595 GCAACCTCAAACTGCTGTGTG 60.535 52.381 7.56 7.56 33.20 3.82
356 357 0.740737 AACCTCAAACTGCTGTGTGC 59.259 50.000 8.97 0.00 43.25 4.57
365 366 4.962836 GCTGTGTGCACTGCCCCT 62.963 66.667 19.41 0.00 46.36 4.79
366 367 2.203394 CTGTGTGCACTGCCCCTT 60.203 61.111 19.41 0.00 0.00 3.95
367 368 2.519063 TGTGTGCACTGCCCCTTG 60.519 61.111 19.41 0.00 0.00 3.61
368 369 2.203337 GTGTGCACTGCCCCTTGA 60.203 61.111 19.41 0.00 0.00 3.02
369 370 2.203337 TGTGCACTGCCCCTTGAC 60.203 61.111 19.41 0.00 0.00 3.18
370 371 2.985847 GTGCACTGCCCCTTGACC 60.986 66.667 10.32 0.00 0.00 4.02
399 400 4.919754 GGCTTGCAACAAATTAAGTCTCTG 59.080 41.667 0.00 0.00 0.00 3.35
422 423 2.145536 TGGAATGATGATCCGAATGCG 58.854 47.619 0.00 0.00 39.98 4.73
445 446 2.213499 GCCTCCAACGGTCTATGAATG 58.787 52.381 0.00 0.00 0.00 2.67
447 448 3.458189 CCTCCAACGGTCTATGAATGAC 58.542 50.000 0.00 0.00 0.00 3.06
471 476 3.589951 ATCTTCTGATGATTGGTGGGG 57.410 47.619 0.54 0.00 0.00 4.96
507 512 2.883267 AAGGCCTTCTCCGCATCTGC 62.883 60.000 13.78 0.00 37.78 4.26
508 513 2.124983 GCCTTCTCCGCATCTGCA 60.125 61.111 2.72 0.00 42.21 4.41
523 528 4.823989 GCATCTGCATTATTCAGGTTACCT 59.176 41.667 0.00 0.00 41.59 3.08
566 715 4.846779 TCAATTTACAGTTCCCACAAGC 57.153 40.909 0.00 0.00 0.00 4.01
571 720 0.466189 ACAGTTCCCACAAGCACAGG 60.466 55.000 0.00 0.00 0.00 4.00
605 754 9.088512 GTTAAGTATACATGCATATAGAGTGGC 57.911 37.037 5.50 0.00 0.00 5.01
607 756 6.871844 AGTATACATGCATATAGAGTGGCTG 58.128 40.000 5.50 0.00 0.00 4.85
678 827 4.655963 TGAGTTCAAAAATGAGGGGAGAG 58.344 43.478 0.00 0.00 0.00 3.20
681 830 3.077484 TCAAAAATGAGGGGAGAGCAG 57.923 47.619 0.00 0.00 0.00 4.24
686 835 0.105760 ATGAGGGGAGAGCAGTCGAT 60.106 55.000 0.00 0.00 0.00 3.59
693 842 2.036992 GGGAGAGCAGTCGATCAATCAT 59.963 50.000 0.00 0.00 0.00 2.45
706 855 9.823647 AGTCGATCAATCATTCACTAATACTTT 57.176 29.630 0.00 0.00 0.00 2.66
752 901 4.878397 GCAAGTGCTAGACCAACTAATCAT 59.122 41.667 0.00 0.00 38.21 2.45
755 904 7.466050 GCAAGTGCTAGACCAACTAATCATTAC 60.466 40.741 0.00 0.00 38.21 1.89
761 910 9.849166 GCTAGACCAACTAATCATTACTCTATC 57.151 37.037 0.00 0.00 0.00 2.08
798 947 4.301072 TGTCAGGGTAATCCTCCTTTTG 57.699 45.455 0.00 0.00 46.12 2.44
799 948 3.010138 TGTCAGGGTAATCCTCCTTTTGG 59.990 47.826 0.00 0.00 46.12 3.28
800 949 3.265995 GTCAGGGTAATCCTCCTTTTGGA 59.734 47.826 0.00 0.00 46.12 3.53
859 1010 4.436584 CCGTCTACTTTACACTAGTCACCG 60.437 50.000 0.00 0.00 0.00 4.94
951 1102 1.508632 TACCAGCAAGTTTCAGCGAC 58.491 50.000 0.00 0.00 35.48 5.19
956 1107 0.730494 GCAAGTTTCAGCGACATGGC 60.730 55.000 0.00 0.00 0.00 4.40
965 1116 1.965930 GCGACATGGCCACAAGACA 60.966 57.895 8.16 0.00 0.00 3.41
975 1126 1.800805 CCACAAGACACAGATCGCTT 58.199 50.000 0.00 0.00 0.00 4.68
1063 1214 0.530744 CATGCTCATGCCACTGCTTT 59.469 50.000 0.00 0.00 38.71 3.51
1090 1241 1.103803 AATGCTCATCTGCAGCTTGG 58.896 50.000 9.47 4.98 46.71 3.61
1113 1264 0.611896 GCCTTTGCCCCAGTGTATGT 60.612 55.000 0.00 0.00 0.00 2.29
1133 1284 2.347490 CTTAGCCACACCCGCACT 59.653 61.111 0.00 0.00 0.00 4.40
1155 1306 5.169992 TCCATAATGCATCAGAATCCGAT 57.830 39.130 0.00 0.00 0.00 4.18
1200 1351 0.038159 CACACTTCTCCGACCCTGAC 60.038 60.000 0.00 0.00 0.00 3.51
1215 1366 0.179187 CTGACGGAGCACTACACTCG 60.179 60.000 0.00 0.00 34.87 4.18
1266 1417 3.434319 CGTGGGGTGTCATGCAGC 61.434 66.667 9.83 9.83 44.33 5.25
1272 1423 2.358615 GTGTCATGCAGCACCCGA 60.359 61.111 0.00 0.00 0.00 5.14
1297 1448 1.101049 AGGTCGTGTTGTTGCCCTTG 61.101 55.000 0.00 0.00 0.00 3.61
1305 1456 1.338020 GTTGTTGCCCTTGACCTTGAG 59.662 52.381 0.00 0.00 0.00 3.02
1323 1474 3.664107 TGAGTCACTGAACATTACTGGC 58.336 45.455 0.00 0.00 0.00 4.85
1344 1495 3.069158 GCCAAATATCTCCTTGCATTGCT 59.931 43.478 10.49 0.00 0.00 3.91
1363 1514 1.542915 CTGGACTTCGTTTCCTCCGTA 59.457 52.381 0.00 0.00 33.84 4.02
1374 1525 4.032900 CGTTTCCTCCGTAGAATTCACATG 59.967 45.833 8.44 0.00 0.00 3.21
1417 1568 3.967326 CCACATACCTCCTGAGATTGGTA 59.033 47.826 0.00 0.00 39.09 3.25
1422 1573 1.415659 CCTCCTGAGATTGGTAGCCTG 59.584 57.143 0.00 0.00 0.00 4.85
1446 1597 2.359531 CCGACTCAGATACCTCAACCTC 59.640 54.545 0.00 0.00 0.00 3.85
1714 1865 0.673644 AGGGATCGGTTTGCTTCACG 60.674 55.000 0.00 0.00 0.00 4.35
1812 1963 1.829222 TCCATACTTGTCCTCCGGAAC 59.171 52.381 5.23 1.65 31.38 3.62
1911 2062 4.901927 ACCTTAATGGAGAGATCCCTTCT 58.098 43.478 0.00 0.00 39.71 2.85
2035 2186 3.816523 CCTTAGCCTAACGGAAAACAACA 59.183 43.478 0.00 0.00 0.00 3.33
2043 2194 3.726291 ACGGAAAACAACATTTCAGGG 57.274 42.857 5.24 0.00 40.34 4.45
2058 2209 0.965363 CAGGGGAAATTCCACCCACG 60.965 60.000 11.24 0.00 42.28 4.94
2074 2225 2.484264 CCCACGCTAGGAAACTTTTCTG 59.516 50.000 1.88 0.00 43.67 3.02
2142 2293 6.385033 CATTCCAGAAAGTTTGACCAGAATC 58.615 40.000 0.00 0.00 0.00 2.52
2188 2339 7.484993 TTGGCTTATAACTACTTGTCTGGTA 57.515 36.000 0.00 0.00 0.00 3.25
2235 2386 3.954258 TCGCATCTCTCACTTATCTTGGA 59.046 43.478 0.00 0.00 0.00 3.53
2445 2596 1.351017 TCTTTGCCCTACTTGACCCAG 59.649 52.381 0.00 0.00 0.00 4.45
2502 2653 2.547211 CTGGAGTTCTTTGTGCTCAGTG 59.453 50.000 0.00 0.00 0.00 3.66
2535 2686 4.260948 GCACAGCTAAAGGCAATGTATCTC 60.261 45.833 0.00 0.00 44.79 2.75
2598 2749 5.376854 GAAATCTTCCAAGCAGCTTACAA 57.623 39.130 7.52 2.58 0.00 2.41
2847 2998 2.479560 GCAAGAAAACAACTTGAGCGGT 60.480 45.455 11.08 0.00 44.92 5.68
2863 3014 0.529992 CGGTTCCATACCTTCGAGCC 60.530 60.000 0.00 0.00 45.40 4.70
2958 3109 6.148811 GTCTCCTGTCTATATCCTCTCTTTCG 59.851 46.154 0.00 0.00 0.00 3.46
3036 3187 6.096987 TCGGTAGCTTGATTAATCTTGACTCT 59.903 38.462 16.24 7.47 0.00 3.24
3324 3475 8.034804 GGTGCATTTATCAATTCAAGTAAGGTT 58.965 33.333 0.00 0.00 0.00 3.50
3615 3766 0.323629 CAAACCTAGTTGGCTCGGGA 59.676 55.000 0.00 0.00 40.22 5.14
4170 4324 5.705905 AGGTAAGCACTTCTATGTTTCCAAC 59.294 40.000 0.00 0.00 0.00 3.77
4212 4367 5.105310 TGCCTTTAACCTAAAAACAAGTGCA 60.105 36.000 0.00 0.00 0.00 4.57
4226 4381 1.906990 AGTGCAGCAGCTTCAGAAAT 58.093 45.000 1.76 0.00 42.74 2.17
4251 4406 8.807948 TTTTCCTTCCTTAACATAGGATTGAG 57.192 34.615 0.00 0.00 43.66 3.02
4317 4472 2.487086 CGGGATGGGTTGCAAGATATCA 60.487 50.000 0.00 0.00 0.00 2.15
4416 4571 3.588842 TCAAGGATGGACTGAACCTTCAT 59.411 43.478 0.00 0.00 40.21 2.57
4453 4608 6.623486 TCTGCATTTCCACAAGATATTTGTG 58.377 36.000 17.06 17.06 46.79 3.33
4520 4675 5.748402 AGCAAATCACAGATTAGATGGTGA 58.252 37.500 0.00 0.00 43.61 4.02
4548 4703 0.179062 TGGTGGTTGGCATGCAAAAC 60.179 50.000 21.36 18.84 0.00 2.43
4729 4884 0.611896 GCCCCAAGGTGTGTTATGCT 60.612 55.000 0.00 0.00 34.57 3.79
4733 4888 2.632377 CCAAGGTGTGTTATGCTCGAT 58.368 47.619 0.00 0.00 0.00 3.59
4742 4897 6.200097 GGTGTGTTATGCTCGATTTTTGTTTT 59.800 34.615 0.00 0.00 0.00 2.43
4782 4937 4.568592 CCAAGTTCTTGGCTCCCTCTATTT 60.569 45.833 17.00 0.00 35.00 1.40
4789 4944 2.312390 GGCTCCCTCTATTTCGTCTCT 58.688 52.381 0.00 0.00 0.00 3.10
4807 4962 9.706691 TTCGTCTCTTTTGTCATTCTAATTACT 57.293 29.630 0.00 0.00 0.00 2.24
4863 5018 4.529109 GACTTCCTGTAGTCTTGCTTCT 57.471 45.455 0.00 0.00 41.07 2.85
4867 5022 7.719871 ACTTCCTGTAGTCTTGCTTCTTATA 57.280 36.000 0.00 0.00 0.00 0.98
4920 5076 6.442513 AGCTTTTTCTTGTATATGCAGGAC 57.557 37.500 5.10 0.00 0.00 3.85
5009 5165 4.917906 ACACTAGCAGAGGGAGAAAAAT 57.082 40.909 0.00 0.00 30.54 1.82
5010 5166 7.565398 AGATACACTAGCAGAGGGAGAAAAATA 59.435 37.037 0.00 0.00 30.54 1.40
5047 5203 9.790344 ATTTCCTTTCTCATGTTCTCCATATAG 57.210 33.333 0.00 0.00 30.71 1.31
5115 5272 0.714180 TACTAGGCCCCCTCAACTCA 59.286 55.000 0.00 0.00 34.61 3.41
5124 5281 3.364549 CCCCCTCAACTCAATAATTGCA 58.635 45.455 0.00 0.00 0.00 4.08
5129 5286 7.364585 CCCCCTCAACTCAATAATTGCAATAAA 60.365 37.037 13.39 4.52 0.00 1.40
5198 5355 8.248117 AGAATTGTACATTTACGTCCTTGTAC 57.752 34.615 19.77 19.77 42.91 2.90
5203 5360 6.864685 TGTACATTTACGTCCTTGTACAGAAG 59.135 38.462 22.97 0.00 45.59 2.85
5212 5369 5.064198 CGTCCTTGTACAGAAGTGTCAAAAA 59.936 40.000 0.00 0.00 38.19 1.94
5257 5414 1.382629 GCCCCTAGCTCAAACCCAA 59.617 57.895 0.00 0.00 38.99 4.12
5268 5425 4.396166 AGCTCAAACCCAACTCATAATTCG 59.604 41.667 0.00 0.00 0.00 3.34
5366 5562 4.635324 GCATCCCATGGTTAAAATTTGGTG 59.365 41.667 11.73 0.00 0.00 4.17
5419 5615 4.698201 TGAAGTGATGTTTGTACCTCCA 57.302 40.909 0.00 0.00 0.00 3.86
5439 5635 6.095440 CCTCCATTGGTAAACCTACAAATCTG 59.905 42.308 1.86 0.00 30.39 2.90
5466 5662 8.907222 AGACCTAAATGCACAATTTCAAATTT 57.093 26.923 0.00 0.00 39.29 1.82
5471 5667 2.547211 TGCACAATTTCAAATTTGGCGG 59.453 40.909 17.90 6.53 0.00 6.13
5473 5669 3.363871 GCACAATTTCAAATTTGGCGGTC 60.364 43.478 17.90 0.00 0.00 4.79
5494 5690 3.892588 TCCGAGTAAAAACCCAATGCTTT 59.107 39.130 0.00 0.00 0.00 3.51
5503 5699 4.790765 AACCCAATGCTTTTTAGAGAGC 57.209 40.909 0.00 0.00 39.33 4.09
5510 5706 5.747951 ATGCTTTTTAGAGAGCTATGCAC 57.252 39.130 0.00 0.00 39.60 4.57
5610 5806 1.925255 AGGATTCAGCCTTGGATGGAA 59.075 47.619 5.02 0.00 33.46 3.53
5641 5837 8.988064 ATTGACATACATAATAGAGGCTAACG 57.012 34.615 0.00 0.00 0.00 3.18
5675 5871 8.707938 AAAGAAAAATGACTGACAAAGGAAAG 57.292 30.769 0.00 0.00 0.00 2.62
5676 5872 7.645058 AGAAAAATGACTGACAAAGGAAAGA 57.355 32.000 0.00 0.00 0.00 2.52
5677 5873 7.484140 AGAAAAATGACTGACAAAGGAAAGAC 58.516 34.615 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.239551 TGTATATAGCCGTATTGTAGATTCACT 57.760 33.333 0.00 0.00 0.00 3.41
17 18 9.064706 GGACTACATACATATGTATATAGCCGT 57.935 37.037 29.05 21.92 45.19 5.68
18 19 8.228464 CGGACTACATACATATGTATATAGCCG 58.772 40.741 33.01 33.01 45.19 5.52
19 20 9.064706 ACGGACTACATACATATGTATATAGCC 57.935 37.037 29.05 27.16 45.19 3.93
26 27 9.287373 TGTCAATACGGACTACATACATATGTA 57.713 33.333 17.65 17.65 44.19 2.29
27 28 8.173542 TGTCAATACGGACTACATACATATGT 57.826 34.615 13.93 13.93 41.24 2.29
28 29 9.290483 GATGTCAATACGGACTACATACATATG 57.710 37.037 0.00 0.00 38.61 1.78
29 30 9.244292 AGATGTCAATACGGACTACATACATAT 57.756 33.333 0.00 0.00 38.61 1.78
30 31 8.631480 AGATGTCAATACGGACTACATACATA 57.369 34.615 0.00 0.00 38.61 2.29
31 32 7.448777 AGAGATGTCAATACGGACTACATACAT 59.551 37.037 0.00 0.00 38.61 2.29
32 33 6.771267 AGAGATGTCAATACGGACTACATACA 59.229 38.462 0.00 0.00 38.61 2.29
33 34 7.204496 AGAGATGTCAATACGGACTACATAC 57.796 40.000 0.00 0.00 38.61 2.39
34 35 8.913487 TTAGAGATGTCAATACGGACTACATA 57.087 34.615 0.00 0.00 38.61 2.29
35 36 7.818997 TTAGAGATGTCAATACGGACTACAT 57.181 36.000 0.00 0.00 38.61 2.29
36 37 7.634671 TTTAGAGATGTCAATACGGACTACA 57.365 36.000 0.00 0.00 38.61 2.74
37 38 8.922058 TTTTTAGAGATGTCAATACGGACTAC 57.078 34.615 0.00 0.00 38.61 2.73
38 39 8.195436 CCTTTTTAGAGATGTCAATACGGACTA 58.805 37.037 0.00 0.00 38.61 2.59
39 40 7.042335 CCTTTTTAGAGATGTCAATACGGACT 58.958 38.462 0.00 0.00 38.61 3.85
40 41 6.238130 GCCTTTTTAGAGATGTCAATACGGAC 60.238 42.308 0.00 0.00 38.29 4.79
41 42 5.815740 GCCTTTTTAGAGATGTCAATACGGA 59.184 40.000 0.00 0.00 0.00 4.69
42 43 5.817816 AGCCTTTTTAGAGATGTCAATACGG 59.182 40.000 0.00 0.00 0.00 4.02
43 44 6.910536 AGCCTTTTTAGAGATGTCAATACG 57.089 37.500 0.00 0.00 0.00 3.06
45 46 9.905713 ACATAAGCCTTTTTAGAGATGTCAATA 57.094 29.630 0.00 0.00 0.00 1.90
46 47 8.814038 ACATAAGCCTTTTTAGAGATGTCAAT 57.186 30.769 0.00 0.00 0.00 2.57
47 48 8.635765 AACATAAGCCTTTTTAGAGATGTCAA 57.364 30.769 0.00 0.00 0.00 3.18
48 49 8.635765 AAACATAAGCCTTTTTAGAGATGTCA 57.364 30.769 0.00 0.00 0.00 3.58
50 51 9.959721 TCTAAACATAAGCCTTTTTAGAGATGT 57.040 29.630 5.96 0.00 36.23 3.06
54 55 9.543018 CGTTTCTAAACATAAGCCTTTTTAGAG 57.457 33.333 8.88 0.00 40.12 2.43
55 56 8.508875 CCGTTTCTAAACATAAGCCTTTTTAGA 58.491 33.333 5.96 5.96 38.29 2.10
56 57 7.753580 CCCGTTTCTAAACATAAGCCTTTTTAG 59.246 37.037 6.41 2.15 38.81 1.85
57 58 7.309316 CCCCGTTTCTAAACATAAGCCTTTTTA 60.309 37.037 6.41 0.00 38.81 1.52
58 59 6.452242 CCCGTTTCTAAACATAAGCCTTTTT 58.548 36.000 6.41 0.00 38.81 1.94
59 60 5.047590 CCCCGTTTCTAAACATAAGCCTTTT 60.048 40.000 6.41 0.00 38.81 2.27
60 61 4.461431 CCCCGTTTCTAAACATAAGCCTTT 59.539 41.667 6.41 0.00 38.81 3.11
61 62 4.014406 CCCCGTTTCTAAACATAAGCCTT 58.986 43.478 6.41 0.00 38.81 4.35
62 63 3.617284 CCCCGTTTCTAAACATAAGCCT 58.383 45.455 6.41 0.00 38.81 4.58
63 64 2.686405 CCCCCGTTTCTAAACATAAGCC 59.314 50.000 6.41 0.00 38.81 4.35
64 65 3.613030 TCCCCCGTTTCTAAACATAAGC 58.387 45.455 6.41 0.00 38.81 3.09
65 66 4.840271 ACTCCCCCGTTTCTAAACATAAG 58.160 43.478 6.41 0.00 38.81 1.73
66 67 4.914177 ACTCCCCCGTTTCTAAACATAA 57.086 40.909 6.41 0.00 38.81 1.90
67 68 4.776837 TGTACTCCCCCGTTTCTAAACATA 59.223 41.667 6.41 0.00 38.81 2.29
68 69 3.583966 TGTACTCCCCCGTTTCTAAACAT 59.416 43.478 6.41 0.00 38.81 2.71
69 70 2.971330 TGTACTCCCCCGTTTCTAAACA 59.029 45.455 6.41 0.00 38.81 2.83
70 71 3.683365 TGTACTCCCCCGTTTCTAAAC 57.317 47.619 0.00 0.00 35.59 2.01
71 72 4.041938 ACAATGTACTCCCCCGTTTCTAAA 59.958 41.667 0.00 0.00 0.00 1.85
72 73 3.583966 ACAATGTACTCCCCCGTTTCTAA 59.416 43.478 0.00 0.00 0.00 2.10
73 74 3.175594 ACAATGTACTCCCCCGTTTCTA 58.824 45.455 0.00 0.00 0.00 2.10
74 75 1.982958 ACAATGTACTCCCCCGTTTCT 59.017 47.619 0.00 0.00 0.00 2.52
75 76 2.484742 ACAATGTACTCCCCCGTTTC 57.515 50.000 0.00 0.00 0.00 2.78
76 77 4.202493 ACTTTACAATGTACTCCCCCGTTT 60.202 41.667 0.00 0.00 0.00 3.60
77 78 3.328637 ACTTTACAATGTACTCCCCCGTT 59.671 43.478 0.00 0.00 0.00 4.44
78 79 2.908351 ACTTTACAATGTACTCCCCCGT 59.092 45.455 0.00 0.00 0.00 5.28
79 80 3.055675 TCACTTTACAATGTACTCCCCCG 60.056 47.826 0.00 0.00 0.00 5.73
80 81 4.563140 TCACTTTACAATGTACTCCCCC 57.437 45.455 0.00 0.00 0.00 5.40
81 82 5.163652 GCAATCACTTTACAATGTACTCCCC 60.164 44.000 0.00 0.00 0.00 4.81
82 83 5.447279 CGCAATCACTTTACAATGTACTCCC 60.447 44.000 0.00 0.00 0.00 4.30
83 84 5.560148 CGCAATCACTTTACAATGTACTCC 58.440 41.667 0.00 0.00 0.00 3.85
84 85 5.022021 GCGCAATCACTTTACAATGTACTC 58.978 41.667 0.30 0.00 0.00 2.59
85 86 4.435518 CGCGCAATCACTTTACAATGTACT 60.436 41.667 8.75 0.00 0.00 2.73
86 87 3.778718 CGCGCAATCACTTTACAATGTAC 59.221 43.478 8.75 0.00 0.00 2.90
87 88 3.433957 ACGCGCAATCACTTTACAATGTA 59.566 39.130 5.73 0.00 0.00 2.29
88 89 2.225491 ACGCGCAATCACTTTACAATGT 59.775 40.909 5.73 0.00 0.00 2.71
89 90 2.589407 CACGCGCAATCACTTTACAATG 59.411 45.455 5.73 0.00 0.00 2.82
90 91 2.482336 TCACGCGCAATCACTTTACAAT 59.518 40.909 5.73 0.00 0.00 2.71
91 92 1.867865 TCACGCGCAATCACTTTACAA 59.132 42.857 5.73 0.00 0.00 2.41
92 93 1.459209 CTCACGCGCAATCACTTTACA 59.541 47.619 5.73 0.00 0.00 2.41
93 94 1.786928 GCTCACGCGCAATCACTTTAC 60.787 52.381 5.73 0.00 0.00 2.01
94 95 0.442310 GCTCACGCGCAATCACTTTA 59.558 50.000 5.73 0.00 0.00 1.85
95 96 1.207593 GCTCACGCGCAATCACTTT 59.792 52.632 5.73 0.00 0.00 2.66
96 97 2.680913 GGCTCACGCGCAATCACTT 61.681 57.895 5.73 0.00 36.88 3.16
97 98 3.121030 GGCTCACGCGCAATCACT 61.121 61.111 5.73 0.00 36.88 3.41
106 107 3.642778 TTGCTAGTCGGGCTCACGC 62.643 63.158 0.00 0.00 0.00 5.34
107 108 1.805945 GTTGCTAGTCGGGCTCACG 60.806 63.158 0.00 0.00 0.00 4.35
108 109 1.805945 CGTTGCTAGTCGGGCTCAC 60.806 63.158 0.00 0.00 0.00 3.51
109 110 2.571757 CGTTGCTAGTCGGGCTCA 59.428 61.111 0.00 0.00 0.00 4.26
110 111 2.202756 CCGTTGCTAGTCGGGCTC 60.203 66.667 12.81 0.00 42.61 4.70
115 116 3.311871 ACTGTAGATACCGTTGCTAGTCG 59.688 47.826 0.00 0.00 0.00 4.18
116 117 4.897025 ACTGTAGATACCGTTGCTAGTC 57.103 45.455 0.00 0.00 0.00 2.59
117 118 5.656213 AAACTGTAGATACCGTTGCTAGT 57.344 39.130 1.29 0.00 34.56 2.57
118 119 6.144080 GCATAAACTGTAGATACCGTTGCTAG 59.856 42.308 1.29 0.00 34.56 3.42
119 120 5.981315 GCATAAACTGTAGATACCGTTGCTA 59.019 40.000 1.29 0.00 34.56 3.49
120 121 4.809426 GCATAAACTGTAGATACCGTTGCT 59.191 41.667 1.29 0.00 34.56 3.91
121 122 4.317839 CGCATAAACTGTAGATACCGTTGC 60.318 45.833 1.29 1.55 34.56 4.17
122 123 4.208460 CCGCATAAACTGTAGATACCGTTG 59.792 45.833 1.29 0.00 34.56 4.10
123 124 4.365723 CCGCATAAACTGTAGATACCGTT 58.634 43.478 0.00 0.00 35.58 4.44
124 125 3.243636 CCCGCATAAACTGTAGATACCGT 60.244 47.826 0.00 0.00 0.00 4.83
125 126 3.314553 CCCGCATAAACTGTAGATACCG 58.685 50.000 0.00 0.00 0.00 4.02
126 127 3.064931 GCCCGCATAAACTGTAGATACC 58.935 50.000 0.00 0.00 0.00 2.73
127 128 2.729882 CGCCCGCATAAACTGTAGATAC 59.270 50.000 0.00 0.00 0.00 2.24
128 129 2.288579 CCGCCCGCATAAACTGTAGATA 60.289 50.000 0.00 0.00 0.00 1.98
129 130 1.540363 CCGCCCGCATAAACTGTAGAT 60.540 52.381 0.00 0.00 0.00 1.98
130 131 0.179094 CCGCCCGCATAAACTGTAGA 60.179 55.000 0.00 0.00 0.00 2.59
131 132 0.461339 ACCGCCCGCATAAACTGTAG 60.461 55.000 0.00 0.00 0.00 2.74
132 133 0.741574 CACCGCCCGCATAAACTGTA 60.742 55.000 0.00 0.00 0.00 2.74
133 134 2.038269 CACCGCCCGCATAAACTGT 61.038 57.895 0.00 0.00 0.00 3.55
134 135 2.038269 ACACCGCCCGCATAAACTG 61.038 57.895 0.00 0.00 0.00 3.16
135 136 2.038269 CACACCGCCCGCATAAACT 61.038 57.895 0.00 0.00 0.00 2.66
136 137 1.579084 TTCACACCGCCCGCATAAAC 61.579 55.000 0.00 0.00 0.00 2.01
137 138 0.889638 TTTCACACCGCCCGCATAAA 60.890 50.000 0.00 0.00 0.00 1.40
138 139 0.889638 TTTTCACACCGCCCGCATAA 60.890 50.000 0.00 0.00 0.00 1.90
139 140 1.302383 CTTTTCACACCGCCCGCATA 61.302 55.000 0.00 0.00 0.00 3.14
140 141 2.596046 TTTTCACACCGCCCGCAT 60.596 55.556 0.00 0.00 0.00 4.73
141 142 3.283684 CTTTTCACACCGCCCGCA 61.284 61.111 0.00 0.00 0.00 5.69
142 143 4.700365 GCTTTTCACACCGCCCGC 62.700 66.667 0.00 0.00 0.00 6.13
143 144 2.141122 ATTGCTTTTCACACCGCCCG 62.141 55.000 0.00 0.00 0.00 6.13
144 145 0.388520 GATTGCTTTTCACACCGCCC 60.389 55.000 0.00 0.00 0.00 6.13
145 146 0.313672 TGATTGCTTTTCACACCGCC 59.686 50.000 0.00 0.00 0.00 6.13
146 147 2.253603 GATGATTGCTTTTCACACCGC 58.746 47.619 0.00 0.00 0.00 5.68
147 148 2.228582 TGGATGATTGCTTTTCACACCG 59.771 45.455 0.00 0.00 0.00 4.94
148 149 3.256631 AGTGGATGATTGCTTTTCACACC 59.743 43.478 0.00 0.00 0.00 4.16
149 150 4.022935 TCAGTGGATGATTGCTTTTCACAC 60.023 41.667 0.00 0.00 31.12 3.82
150 151 4.143543 TCAGTGGATGATTGCTTTTCACA 58.856 39.130 0.00 0.00 31.12 3.58
151 152 4.730657 CTCAGTGGATGATTGCTTTTCAC 58.269 43.478 0.00 0.00 37.28 3.18
152 153 3.192001 GCTCAGTGGATGATTGCTTTTCA 59.808 43.478 0.00 0.00 37.28 2.69
153 154 3.442977 AGCTCAGTGGATGATTGCTTTTC 59.557 43.478 0.00 0.00 36.34 2.29
154 155 3.428532 AGCTCAGTGGATGATTGCTTTT 58.571 40.909 0.00 0.00 36.34 2.27
155 156 3.083122 AGCTCAGTGGATGATTGCTTT 57.917 42.857 0.00 0.00 36.34 3.51
156 157 2.753452 CAAGCTCAGTGGATGATTGCTT 59.247 45.455 0.00 0.00 45.42 3.91
157 158 2.026542 TCAAGCTCAGTGGATGATTGCT 60.027 45.455 0.00 0.00 40.22 3.91
158 159 2.097142 GTCAAGCTCAGTGGATGATTGC 59.903 50.000 0.00 0.00 37.28 3.56
159 160 3.340928 TGTCAAGCTCAGTGGATGATTG 58.659 45.455 0.00 0.00 37.28 2.67
160 161 3.008813 ACTGTCAAGCTCAGTGGATGATT 59.991 43.478 5.79 0.00 43.32 2.57
161 162 2.570752 ACTGTCAAGCTCAGTGGATGAT 59.429 45.455 5.79 0.00 43.32 2.45
162 163 1.973515 ACTGTCAAGCTCAGTGGATGA 59.026 47.619 5.79 0.00 43.32 2.92
163 164 2.469274 ACTGTCAAGCTCAGTGGATG 57.531 50.000 5.79 0.00 43.32 3.51
168 169 3.144506 CAAATCCACTGTCAAGCTCAGT 58.855 45.455 0.83 0.83 45.43 3.41
169 170 2.486982 CCAAATCCACTGTCAAGCTCAG 59.513 50.000 0.00 0.00 38.68 3.35
170 171 2.106338 TCCAAATCCACTGTCAAGCTCA 59.894 45.455 0.00 0.00 0.00 4.26
171 172 2.783135 TCCAAATCCACTGTCAAGCTC 58.217 47.619 0.00 0.00 0.00 4.09
172 173 2.957402 TCCAAATCCACTGTCAAGCT 57.043 45.000 0.00 0.00 0.00 3.74
173 174 2.352127 GCTTCCAAATCCACTGTCAAGC 60.352 50.000 0.00 0.00 0.00 4.01
174 175 2.095567 CGCTTCCAAATCCACTGTCAAG 60.096 50.000 0.00 0.00 0.00 3.02
175 176 1.879380 CGCTTCCAAATCCACTGTCAA 59.121 47.619 0.00 0.00 0.00 3.18
176 177 1.202758 ACGCTTCCAAATCCACTGTCA 60.203 47.619 0.00 0.00 0.00 3.58
177 178 1.523758 ACGCTTCCAAATCCACTGTC 58.476 50.000 0.00 0.00 0.00 3.51
178 179 1.608590 CAACGCTTCCAAATCCACTGT 59.391 47.619 0.00 0.00 0.00 3.55
179 180 1.666888 GCAACGCTTCCAAATCCACTG 60.667 52.381 0.00 0.00 0.00 3.66
180 181 0.598065 GCAACGCTTCCAAATCCACT 59.402 50.000 0.00 0.00 0.00 4.00
181 182 0.598065 AGCAACGCTTCCAAATCCAC 59.402 50.000 0.00 0.00 33.89 4.02
182 183 0.597568 CAGCAACGCTTCCAAATCCA 59.402 50.000 0.00 0.00 36.40 3.41
183 184 0.109132 CCAGCAACGCTTCCAAATCC 60.109 55.000 0.00 0.00 36.40 3.01
184 185 0.109132 CCCAGCAACGCTTCCAAATC 60.109 55.000 0.00 0.00 36.40 2.17
185 186 0.539438 TCCCAGCAACGCTTCCAAAT 60.539 50.000 0.00 0.00 36.40 2.32
186 187 0.539438 ATCCCAGCAACGCTTCCAAA 60.539 50.000 0.00 0.00 36.40 3.28
187 188 0.326595 TATCCCAGCAACGCTTCCAA 59.673 50.000 0.00 0.00 36.40 3.53
188 189 0.107703 CTATCCCAGCAACGCTTCCA 60.108 55.000 0.00 0.00 36.40 3.53
189 190 0.107654 ACTATCCCAGCAACGCTTCC 60.108 55.000 0.00 0.00 36.40 3.46
190 191 1.009829 CACTATCCCAGCAACGCTTC 58.990 55.000 0.00 0.00 36.40 3.86
191 192 1.026718 GCACTATCCCAGCAACGCTT 61.027 55.000 0.00 0.00 36.40 4.68
192 193 1.450312 GCACTATCCCAGCAACGCT 60.450 57.895 0.00 0.00 40.77 5.07
193 194 1.305219 TTGCACTATCCCAGCAACGC 61.305 55.000 0.00 0.00 42.71 4.84
194 195 0.729116 CTTGCACTATCCCAGCAACG 59.271 55.000 0.00 0.00 42.71 4.10
195 196 1.826385 ACTTGCACTATCCCAGCAAC 58.174 50.000 0.00 0.00 42.71 4.17
196 197 3.712016 TTACTTGCACTATCCCAGCAA 57.288 42.857 0.00 0.00 45.07 3.91
197 198 3.931907 ATTACTTGCACTATCCCAGCA 57.068 42.857 0.00 0.00 36.32 4.41
198 199 4.558538 CAATTACTTGCACTATCCCAGC 57.441 45.455 0.00 0.00 0.00 4.85
210 211 4.881850 ACTATCTTTCCCGGCAATTACTTG 59.118 41.667 0.00 0.00 35.36 3.16
211 212 4.881850 CACTATCTTTCCCGGCAATTACTT 59.118 41.667 0.00 0.00 0.00 2.24
212 213 4.451900 CACTATCTTTCCCGGCAATTACT 58.548 43.478 0.00 0.00 0.00 2.24
213 214 3.003378 GCACTATCTTTCCCGGCAATTAC 59.997 47.826 0.00 0.00 0.00 1.89
214 215 3.211045 GCACTATCTTTCCCGGCAATTA 58.789 45.455 0.00 0.00 0.00 1.40
215 216 2.024414 GCACTATCTTTCCCGGCAATT 58.976 47.619 0.00 0.00 0.00 2.32
216 217 1.680338 GCACTATCTTTCCCGGCAAT 58.320 50.000 0.00 0.00 0.00 3.56
217 218 0.742990 CGCACTATCTTTCCCGGCAA 60.743 55.000 0.00 0.00 0.00 4.52
218 219 1.153449 CGCACTATCTTTCCCGGCA 60.153 57.895 0.00 0.00 0.00 5.69
219 220 2.534903 GCGCACTATCTTTCCCGGC 61.535 63.158 0.30 0.00 0.00 6.13
220 221 0.462047 AAGCGCACTATCTTTCCCGG 60.462 55.000 11.47 0.00 0.00 5.73
221 222 1.327764 GAAAGCGCACTATCTTTCCCG 59.672 52.381 11.47 0.00 41.19 5.14
224 225 1.327764 CGGGAAAGCGCACTATCTTTC 59.672 52.381 11.47 9.65 44.39 2.62
225 226 1.369625 CGGGAAAGCGCACTATCTTT 58.630 50.000 11.47 0.00 35.44 2.52
226 227 1.090052 GCGGGAAAGCGCACTATCTT 61.090 55.000 11.47 0.00 0.00 2.40
227 228 1.521681 GCGGGAAAGCGCACTATCT 60.522 57.895 11.47 0.00 0.00 1.98
228 229 1.766143 CTGCGGGAAAGCGCACTATC 61.766 60.000 11.47 1.22 40.67 2.08
229 230 1.815421 CTGCGGGAAAGCGCACTAT 60.815 57.895 11.47 0.00 40.67 2.12
230 231 2.434185 CTGCGGGAAAGCGCACTA 60.434 61.111 11.47 0.00 40.67 2.74
231 232 4.626081 ACTGCGGGAAAGCGCACT 62.626 61.111 11.47 0.00 40.67 4.40
232 233 4.389576 CACTGCGGGAAAGCGCAC 62.390 66.667 11.47 0.00 40.67 5.34
233 234 4.927782 ACACTGCGGGAAAGCGCA 62.928 61.111 11.47 0.00 40.67 6.09
234 235 4.389576 CACACTGCGGGAAAGCGC 62.390 66.667 0.00 0.00 40.67 5.92
235 236 2.058829 AAACACACTGCGGGAAAGCG 62.059 55.000 0.00 0.00 40.67 4.68
236 237 0.317854 GAAACACACTGCGGGAAAGC 60.318 55.000 0.00 0.00 37.71 3.51
237 238 0.041312 CGAAACACACTGCGGGAAAG 60.041 55.000 0.00 0.00 0.00 2.62
238 239 0.745128 ACGAAACACACTGCGGGAAA 60.745 50.000 0.00 0.00 0.00 3.13
239 240 1.153329 ACGAAACACACTGCGGGAA 60.153 52.632 0.00 0.00 0.00 3.97
240 241 1.885388 CACGAAACACACTGCGGGA 60.885 57.895 0.00 0.00 0.00 5.14
241 242 1.885388 TCACGAAACACACTGCGGG 60.885 57.895 0.00 0.00 0.00 6.13
242 243 1.275657 GTCACGAAACACACTGCGG 59.724 57.895 0.00 0.00 0.00 5.69
243 244 1.084290 CGTCACGAAACACACTGCG 60.084 57.895 0.00 0.00 0.00 5.18
244 245 0.315059 CACGTCACGAAACACACTGC 60.315 55.000 2.91 0.00 0.00 4.40
245 246 0.996462 ACACGTCACGAAACACACTG 59.004 50.000 2.91 0.00 0.00 3.66
246 247 0.996462 CACACGTCACGAAACACACT 59.004 50.000 2.91 0.00 0.00 3.55
247 248 0.717224 ACACACGTCACGAAACACAC 59.283 50.000 2.91 0.00 0.00 3.82
248 249 0.716666 CACACACGTCACGAAACACA 59.283 50.000 2.91 0.00 0.00 3.72
249 250 0.717224 ACACACACGTCACGAAACAC 59.283 50.000 2.91 0.00 0.00 3.32
250 251 1.127029 CAACACACACGTCACGAAACA 59.873 47.619 2.91 0.00 0.00 2.83
251 252 1.390803 TCAACACACACGTCACGAAAC 59.609 47.619 2.91 0.00 0.00 2.78
252 253 1.711206 TCAACACACACGTCACGAAA 58.289 45.000 2.91 0.00 0.00 3.46
253 254 1.590698 CATCAACACACACGTCACGAA 59.409 47.619 2.91 0.00 0.00 3.85
254 255 1.204792 CATCAACACACACGTCACGA 58.795 50.000 2.91 0.00 0.00 4.35
255 256 0.383002 GCATCAACACACACGTCACG 60.383 55.000 0.00 0.00 0.00 4.35
256 257 0.937304 AGCATCAACACACACGTCAC 59.063 50.000 0.00 0.00 0.00 3.67
257 258 0.936600 CAGCATCAACACACACGTCA 59.063 50.000 0.00 0.00 0.00 4.35
258 259 0.384725 GCAGCATCAACACACACGTC 60.385 55.000 0.00 0.00 0.00 4.34
259 260 0.815213 AGCAGCATCAACACACACGT 60.815 50.000 0.00 0.00 0.00 4.49
260 261 0.385098 CAGCAGCATCAACACACACG 60.385 55.000 0.00 0.00 0.00 4.49
261 262 0.946528 TCAGCAGCATCAACACACAC 59.053 50.000 0.00 0.00 0.00 3.82
262 263 1.538075 CATCAGCAGCATCAACACACA 59.462 47.619 0.00 0.00 0.00 3.72
263 264 1.538512 ACATCAGCAGCATCAACACAC 59.461 47.619 0.00 0.00 0.00 3.82
264 265 1.900245 ACATCAGCAGCATCAACACA 58.100 45.000 0.00 0.00 0.00 3.72
265 266 3.624410 TCATACATCAGCAGCATCAACAC 59.376 43.478 0.00 0.00 0.00 3.32
266 267 3.875134 CTCATACATCAGCAGCATCAACA 59.125 43.478 0.00 0.00 0.00 3.33
267 268 3.303857 GCTCATACATCAGCAGCATCAAC 60.304 47.826 0.00 0.00 35.56 3.18
268 269 2.876550 GCTCATACATCAGCAGCATCAA 59.123 45.455 0.00 0.00 35.56 2.57
269 270 2.158871 TGCTCATACATCAGCAGCATCA 60.159 45.455 0.00 0.00 40.80 3.07
270 271 2.490991 TGCTCATACATCAGCAGCATC 58.509 47.619 0.00 0.00 40.80 3.91
271 272 2.632987 TGCTCATACATCAGCAGCAT 57.367 45.000 0.00 0.00 40.80 3.79
272 273 2.406596 TTGCTCATACATCAGCAGCA 57.593 45.000 0.00 0.00 46.18 4.41
273 274 3.139850 AGATTGCTCATACATCAGCAGC 58.860 45.455 0.00 0.00 46.18 5.25
274 275 4.814771 TGAAGATTGCTCATACATCAGCAG 59.185 41.667 0.00 0.00 46.18 4.24
275 276 4.773013 TGAAGATTGCTCATACATCAGCA 58.227 39.130 0.00 0.00 44.02 4.41
276 277 5.508872 GTTGAAGATTGCTCATACATCAGC 58.491 41.667 0.00 0.00 36.08 4.26
277 278 5.521372 TCGTTGAAGATTGCTCATACATCAG 59.479 40.000 0.00 0.00 0.00 2.90
278 279 5.418676 TCGTTGAAGATTGCTCATACATCA 58.581 37.500 0.00 0.00 0.00 3.07
279 280 5.750547 TCTCGTTGAAGATTGCTCATACATC 59.249 40.000 0.00 0.00 0.00 3.06
280 281 5.664457 TCTCGTTGAAGATTGCTCATACAT 58.336 37.500 0.00 0.00 0.00 2.29
281 282 5.072040 TCTCGTTGAAGATTGCTCATACA 57.928 39.130 0.00 0.00 0.00 2.29
282 283 4.026145 GCTCTCGTTGAAGATTGCTCATAC 60.026 45.833 0.00 0.00 0.00 2.39
283 284 4.115516 GCTCTCGTTGAAGATTGCTCATA 58.884 43.478 0.00 0.00 0.00 2.15
284 285 2.935201 GCTCTCGTTGAAGATTGCTCAT 59.065 45.455 0.00 0.00 0.00 2.90
285 286 2.341257 GCTCTCGTTGAAGATTGCTCA 58.659 47.619 0.00 0.00 0.00 4.26
286 287 1.663135 GGCTCTCGTTGAAGATTGCTC 59.337 52.381 0.00 0.00 0.00 4.26
287 288 1.002430 TGGCTCTCGTTGAAGATTGCT 59.998 47.619 0.00 0.00 0.00 3.91
288 289 1.442769 TGGCTCTCGTTGAAGATTGC 58.557 50.000 0.00 0.00 0.00 3.56
289 290 3.070018 AGTTGGCTCTCGTTGAAGATTG 58.930 45.455 0.00 0.00 0.00 2.67
290 291 3.409026 AGTTGGCTCTCGTTGAAGATT 57.591 42.857 0.00 0.00 0.00 2.40
291 292 4.537135 TTAGTTGGCTCTCGTTGAAGAT 57.463 40.909 0.00 0.00 0.00 2.40
292 293 4.330944 TTTAGTTGGCTCTCGTTGAAGA 57.669 40.909 0.00 0.00 0.00 2.87
293 294 5.613358 ATTTTAGTTGGCTCTCGTTGAAG 57.387 39.130 0.00 0.00 0.00 3.02
294 295 6.483974 TGTTATTTTAGTTGGCTCTCGTTGAA 59.516 34.615 0.00 0.00 0.00 2.69
295 296 5.992829 TGTTATTTTAGTTGGCTCTCGTTGA 59.007 36.000 0.00 0.00 0.00 3.18
296 297 6.236017 TGTTATTTTAGTTGGCTCTCGTTG 57.764 37.500 0.00 0.00 0.00 4.10
297 298 6.870971 TTGTTATTTTAGTTGGCTCTCGTT 57.129 33.333 0.00 0.00 0.00 3.85
298 299 6.128007 CCATTGTTATTTTAGTTGGCTCTCGT 60.128 38.462 0.00 0.00 0.00 4.18
299 300 6.258160 CCATTGTTATTTTAGTTGGCTCTCG 58.742 40.000 0.00 0.00 0.00 4.04
300 301 6.036470 GCCATTGTTATTTTAGTTGGCTCTC 58.964 40.000 3.87 0.00 43.68 3.20
301 302 5.965922 GCCATTGTTATTTTAGTTGGCTCT 58.034 37.500 3.87 0.00 43.68 4.09
304 305 4.329801 GCAGCCATTGTTATTTTAGTTGGC 59.670 41.667 2.89 2.89 46.59 4.52
305 306 4.562394 CGCAGCCATTGTTATTTTAGTTGG 59.438 41.667 0.00 0.00 0.00 3.77
306 307 5.060816 CACGCAGCCATTGTTATTTTAGTTG 59.939 40.000 0.00 0.00 0.00 3.16
307 308 5.160641 CACGCAGCCATTGTTATTTTAGTT 58.839 37.500 0.00 0.00 0.00 2.24
308 309 4.380444 CCACGCAGCCATTGTTATTTTAGT 60.380 41.667 0.00 0.00 0.00 2.24
309 310 4.104776 CCACGCAGCCATTGTTATTTTAG 58.895 43.478 0.00 0.00 0.00 1.85
310 311 3.759086 TCCACGCAGCCATTGTTATTTTA 59.241 39.130 0.00 0.00 0.00 1.52
311 312 2.560542 TCCACGCAGCCATTGTTATTTT 59.439 40.909 0.00 0.00 0.00 1.82
312 313 2.166829 TCCACGCAGCCATTGTTATTT 58.833 42.857 0.00 0.00 0.00 1.40
313 314 1.832883 TCCACGCAGCCATTGTTATT 58.167 45.000 0.00 0.00 0.00 1.40
314 315 2.057137 ATCCACGCAGCCATTGTTAT 57.943 45.000 0.00 0.00 0.00 1.89
315 316 2.560504 CTATCCACGCAGCCATTGTTA 58.439 47.619 0.00 0.00 0.00 2.41
316 317 1.382522 CTATCCACGCAGCCATTGTT 58.617 50.000 0.00 0.00 0.00 2.83
317 318 1.097547 GCTATCCACGCAGCCATTGT 61.098 55.000 0.00 0.00 0.00 2.71
318 319 1.096967 TGCTATCCACGCAGCCATTG 61.097 55.000 0.00 0.00 36.95 2.82
319 320 0.394216 TTGCTATCCACGCAGCCATT 60.394 50.000 0.00 0.00 38.80 3.16
320 321 1.097547 GTTGCTATCCACGCAGCCAT 61.098 55.000 0.00 0.00 38.80 4.40
321 322 1.745115 GTTGCTATCCACGCAGCCA 60.745 57.895 0.00 0.00 38.80 4.75
322 323 3.102097 GTTGCTATCCACGCAGCC 58.898 61.111 0.00 0.00 38.80 4.85
323 324 1.432270 GAGGTTGCTATCCACGCAGC 61.432 60.000 0.00 0.00 38.80 5.25
324 325 0.108186 TGAGGTTGCTATCCACGCAG 60.108 55.000 0.00 0.00 38.80 5.18
325 326 0.323302 TTGAGGTTGCTATCCACGCA 59.677 50.000 0.00 0.00 35.22 5.24
326 327 1.130561 GTTTGAGGTTGCTATCCACGC 59.869 52.381 0.00 0.00 0.00 5.34
327 328 2.416547 CAGTTTGAGGTTGCTATCCACG 59.583 50.000 0.00 0.00 0.00 4.94
328 329 2.162408 GCAGTTTGAGGTTGCTATCCAC 59.838 50.000 0.00 0.00 35.05 4.02
329 330 2.040278 AGCAGTTTGAGGTTGCTATCCA 59.960 45.455 0.00 0.00 45.67 3.41
330 331 2.421424 CAGCAGTTTGAGGTTGCTATCC 59.579 50.000 0.00 0.00 45.75 2.59
331 332 3.077359 ACAGCAGTTTGAGGTTGCTATC 58.923 45.455 0.00 0.00 45.75 2.08
332 333 2.816087 CACAGCAGTTTGAGGTTGCTAT 59.184 45.455 0.00 0.00 45.75 2.97
333 334 2.221169 CACAGCAGTTTGAGGTTGCTA 58.779 47.619 0.00 0.00 45.75 3.49
335 336 0.740737 ACACAGCAGTTTGAGGTTGC 59.259 50.000 0.00 0.00 38.09 4.17
336 337 1.534595 GCACACAGCAGTTTGAGGTTG 60.535 52.381 0.00 0.00 44.79 3.77
337 338 0.740737 GCACACAGCAGTTTGAGGTT 59.259 50.000 0.00 0.00 44.79 3.50
338 339 2.408333 GCACACAGCAGTTTGAGGT 58.592 52.632 0.00 0.00 44.79 3.85
348 349 4.962836 AGGGGCAGTGCACACAGC 62.963 66.667 21.13 18.87 42.21 4.40
349 350 2.203394 AAGGGGCAGTGCACACAG 60.203 61.111 21.13 9.61 30.93 3.66
350 351 2.519063 CAAGGGGCAGTGCACACA 60.519 61.111 21.13 0.00 30.93 3.72
351 352 2.203337 TCAAGGGGCAGTGCACAC 60.203 61.111 21.13 10.63 30.93 3.82
352 353 2.203337 GTCAAGGGGCAGTGCACA 60.203 61.111 21.13 0.00 30.93 4.57
353 354 2.124507 TAGGTCAAGGGGCAGTGCAC 62.125 60.000 18.61 14.45 0.00 4.57
354 355 1.207488 ATAGGTCAAGGGGCAGTGCA 61.207 55.000 18.61 0.00 0.00 4.57
355 356 0.034089 AATAGGTCAAGGGGCAGTGC 60.034 55.000 6.55 6.55 0.00 4.40
356 357 1.743772 CGAATAGGTCAAGGGGCAGTG 60.744 57.143 0.00 0.00 0.00 3.66
357 358 0.541863 CGAATAGGTCAAGGGGCAGT 59.458 55.000 0.00 0.00 0.00 4.40
358 359 0.179045 CCGAATAGGTCAAGGGGCAG 60.179 60.000 0.00 0.00 34.51 4.85
359 360 1.912220 CCGAATAGGTCAAGGGGCA 59.088 57.895 0.00 0.00 34.51 5.36
360 361 1.526225 GCCGAATAGGTCAAGGGGC 60.526 63.158 0.00 0.00 43.70 5.80
361 362 0.546598 AAGCCGAATAGGTCAAGGGG 59.453 55.000 0.00 0.00 43.70 4.79
362 363 1.668419 CAAGCCGAATAGGTCAAGGG 58.332 55.000 0.00 0.00 43.70 3.95
363 364 1.017387 GCAAGCCGAATAGGTCAAGG 58.983 55.000 0.00 0.00 43.70 3.61
364 365 1.737838 TGCAAGCCGAATAGGTCAAG 58.262 50.000 0.00 0.00 43.70 3.02
365 366 1.810151 GTTGCAAGCCGAATAGGTCAA 59.190 47.619 0.00 0.00 43.70 3.18
366 367 1.271108 TGTTGCAAGCCGAATAGGTCA 60.271 47.619 0.00 0.00 43.70 4.02
367 368 1.448985 TGTTGCAAGCCGAATAGGTC 58.551 50.000 0.00 0.00 43.70 3.85
368 369 1.904287 TTGTTGCAAGCCGAATAGGT 58.096 45.000 0.00 0.00 43.70 3.08
369 370 3.508744 ATTTGTTGCAAGCCGAATAGG 57.491 42.857 0.00 0.00 44.97 2.57
370 371 6.092748 ACTTAATTTGTTGCAAGCCGAATAG 58.907 36.000 0.00 0.00 0.00 1.73
399 400 4.293415 GCATTCGGATCATCATTCCAAAC 58.707 43.478 0.00 0.00 32.45 2.93
422 423 0.811616 CATAGACCGTTGGAGGCAGC 60.812 60.000 0.00 0.00 33.69 5.25
489 494 2.906458 CAGATGCGGAGAAGGCCT 59.094 61.111 0.00 0.00 0.00 5.19
543 548 6.007076 TGCTTGTGGGAACTGTAAATTGATA 58.993 36.000 0.00 0.00 0.00 2.15
544 549 4.832266 TGCTTGTGGGAACTGTAAATTGAT 59.168 37.500 0.00 0.00 0.00 2.57
566 715 6.106003 TGTATACTTAACTCATGTGCCTGTG 58.894 40.000 4.17 0.00 0.00 3.66
571 720 6.603237 TGCATGTATACTTAACTCATGTGC 57.397 37.500 4.17 0.00 38.35 4.57
598 747 4.760530 TCAGTAAATATGCAGCCACTCT 57.239 40.909 0.00 0.00 0.00 3.24
601 750 5.335127 CAAGTTCAGTAAATATGCAGCCAC 58.665 41.667 0.00 0.00 0.00 5.01
605 754 5.503031 CGAGGCAAGTTCAGTAAATATGCAG 60.503 44.000 0.00 0.00 34.66 4.41
607 756 4.570772 TCGAGGCAAGTTCAGTAAATATGC 59.429 41.667 0.00 0.00 33.14 3.14
678 827 5.973651 TTAGTGAATGATTGATCGACTGC 57.026 39.130 0.00 0.00 0.00 4.40
681 830 9.855361 CAAAGTATTAGTGAATGATTGATCGAC 57.145 33.333 0.00 0.00 0.00 4.20
713 862 4.394300 GCACTTGCAACTAGAACATGATCT 59.606 41.667 10.62 10.62 41.59 2.75
804 953 8.243426 TGCAACTGAACCTGACATTATAATTTC 58.757 33.333 4.89 4.89 0.00 2.17
859 1010 2.190981 CGTAGTAAATCACGGTGCTCC 58.809 52.381 2.51 0.00 34.57 4.70
934 1085 0.877071 ATGTCGCTGAAACTTGCTGG 59.123 50.000 0.00 0.00 0.00 4.85
936 1087 0.877071 CCATGTCGCTGAAACTTGCT 59.123 50.000 0.00 0.00 0.00 3.91
951 1102 1.741706 GATCTGTGTCTTGTGGCCATG 59.258 52.381 9.72 2.38 0.00 3.66
956 1107 1.462283 CAAGCGATCTGTGTCTTGTGG 59.538 52.381 0.00 0.00 33.27 4.17
975 1126 5.702670 GCTCAATTATGCTAGTGGCTAATCA 59.297 40.000 0.00 0.00 42.39 2.57
1063 1214 2.011947 GCAGATGAGCATTGCAGTACA 58.988 47.619 11.91 5.93 37.75 2.90
1090 1241 2.116125 ACTGGGGCAAAGGCTCAC 59.884 61.111 0.00 0.00 44.63 3.51
1113 1264 2.349755 GCGGGTGTGGCTAAGGAA 59.650 61.111 0.00 0.00 0.00 3.36
1133 1284 4.622260 TCGGATTCTGATGCATTATGGA 57.378 40.909 0.00 0.00 0.00 3.41
1161 1312 0.546598 ACCTAACACATAGCAGGGCC 59.453 55.000 0.00 0.00 32.12 5.80
1200 1351 1.154016 CCACGAGTGTAGTGCTCCG 60.154 63.158 2.36 0.00 38.22 4.63
1215 1366 1.227002 GACGGATTCGCTCCTCCAC 60.227 63.158 0.00 0.00 42.47 4.02
1297 1448 5.406780 CAGTAATGTTCAGTGACTCAAGGTC 59.593 44.000 0.00 0.00 44.70 3.85
1305 1456 2.778299 TGGCCAGTAATGTTCAGTGAC 58.222 47.619 0.00 0.00 0.00 3.67
1323 1474 4.500887 CCAGCAATGCAAGGAGATATTTGG 60.501 45.833 8.35 0.00 0.00 3.28
1344 1495 1.542915 CTACGGAGGAAACGAAGTCCA 59.457 52.381 0.00 0.00 45.00 4.02
1363 1514 4.858850 TGGTTATCAGCCATGTGAATTCT 58.141 39.130 7.05 0.00 0.00 2.40
1387 1538 1.521681 GAGGTATGTGGCCGCTGAC 60.522 63.158 18.96 14.62 0.00 3.51
1392 1543 1.043116 TCTCAGGAGGTATGTGGCCG 61.043 60.000 0.00 0.00 0.00 6.13
1417 1568 0.259065 TATCTGAGTCGGGTCAGGCT 59.741 55.000 13.07 5.92 43.69 4.58
1422 1573 2.054232 TGAGGTATCTGAGTCGGGTC 57.946 55.000 0.00 0.00 0.00 4.46
1446 1597 2.487934 CCGGTGATAGAATTCCTGCTG 58.512 52.381 0.65 0.00 0.00 4.41
1714 1865 5.561679 AGGGAGAAACAGAAATGTAAGGTC 58.438 41.667 0.00 0.00 0.00 3.85
1779 1930 1.765314 AGTATGGACAGTGATGGGCTC 59.235 52.381 0.00 0.00 0.00 4.70
1812 1963 4.217118 GGCATTTCACCAGATAGGCTATTG 59.783 45.833 8.71 8.72 43.14 1.90
1911 2062 7.942341 ACAAGAGATGGGTTATCAAAAAGTGTA 59.058 33.333 0.00 0.00 38.31 2.90
2025 2176 4.681074 TTCCCCTGAAATGTTGTTTTCC 57.319 40.909 0.00 0.00 35.23 3.13
2043 2194 1.379527 CTAGCGTGGGTGGAATTTCC 58.620 55.000 8.59 8.59 36.96 3.13
2058 2209 2.796557 AGGGCAGAAAAGTTTCCTAGC 58.203 47.619 0.13 3.23 37.92 3.42
2074 2225 1.839424 AGCAACAAGGAACATAGGGC 58.161 50.000 0.00 0.00 0.00 5.19
2133 2284 4.393371 GCTTGTAGACTTTGGATTCTGGTC 59.607 45.833 0.00 0.00 0.00 4.02
2142 2293 6.128172 CCAAATCTAGTGCTTGTAGACTTTGG 60.128 42.308 17.40 17.40 37.93 3.28
2188 2339 2.438021 TGTAAAGAGCTGGTGGAACTGT 59.562 45.455 0.00 0.00 36.74 3.55
2502 2653 2.809861 TTAGCTGTGCAGAGGCTGGC 62.810 60.000 13.44 0.00 41.91 4.85
2518 2669 7.946655 TGTTATCGAGATACATTGCCTTTAG 57.053 36.000 0.00 0.00 0.00 1.85
2535 2686 5.353956 TGTTCCATGAATCTGGTTGTTATCG 59.646 40.000 0.00 0.00 37.57 2.92
2633 2784 7.619698 TGAGTTTTCCTATCTCTGAAGGTATCA 59.380 37.037 0.00 0.00 36.38 2.15
2634 2785 7.923878 GTGAGTTTTCCTATCTCTGAAGGTATC 59.076 40.741 0.00 0.00 34.30 2.24
2847 2998 1.687123 GCTAGGCTCGAAGGTATGGAA 59.313 52.381 0.00 0.00 0.00 3.53
2863 3014 2.997986 CCAAATTTTTGCAGCCTGCTAG 59.002 45.455 18.96 0.00 45.31 3.42
2934 3085 6.234920 CGAAAGAGAGGATATAGACAGGAGA 58.765 44.000 0.00 0.00 0.00 3.71
2958 3109 7.636150 ATTATATGACAAATCTAGGCATGCC 57.364 36.000 30.12 30.12 0.00 4.40
3612 3763 5.479124 TGTAGACTACTCCAAAACTTCCC 57.521 43.478 13.67 0.00 0.00 3.97
3615 3766 6.896883 ACCTTTGTAGACTACTCCAAAACTT 58.103 36.000 13.67 0.00 33.02 2.66
4170 4324 5.186996 AGGCAGTTTATGTTCAACAACTG 57.813 39.130 14.22 14.22 37.47 3.16
4212 4367 4.021632 GGAAGGAAAATTTCTGAAGCTGCT 60.022 41.667 5.65 0.00 0.00 4.24
4317 4472 1.000163 CTGTAGACGTCACCTGCAGTT 60.000 52.381 19.50 0.00 38.83 3.16
4397 4552 2.240667 CCATGAAGGTTCAGTCCATCCT 59.759 50.000 0.00 0.00 41.08 3.24
4416 4571 4.517285 GAAATGCAGAGACTACCAATCCA 58.483 43.478 0.00 0.00 0.00 3.41
4453 4608 9.832445 TGGAATAATACTGGTCTCTAAAATGTC 57.168 33.333 0.00 0.00 0.00 3.06
4520 4675 2.516888 CCAACCACCAGACGGTCCT 61.517 63.158 4.14 0.00 44.71 3.85
4539 4694 4.740268 ACTGCATGATACAGTTTTGCATG 58.260 39.130 0.00 0.00 46.01 4.06
4661 4816 1.412343 TGACTCAGCAGTGCAGTGTTA 59.588 47.619 22.22 10.38 30.63 2.41
4711 4866 1.463674 GAGCATAACACACCTTGGGG 58.536 55.000 0.00 0.00 38.88 4.96
4894 5049 8.458843 GTCCTGCATATACAAGAAAAAGCTTTA 58.541 33.333 13.10 0.00 0.00 1.85
4897 5052 6.183347 AGTCCTGCATATACAAGAAAAAGCT 58.817 36.000 0.00 0.00 0.00 3.74
4905 5060 5.178061 TGACACAAGTCCTGCATATACAAG 58.822 41.667 0.00 0.00 44.33 3.16
4906 5061 5.159273 TGACACAAGTCCTGCATATACAA 57.841 39.130 0.00 0.00 44.33 2.41
4941 5097 4.272261 TCGACATATGCATTGCAAATACGT 59.728 37.500 16.46 8.64 43.62 3.57
4942 5098 4.771360 TCGACATATGCATTGCAAATACG 58.229 39.130 16.46 16.37 43.62 3.06
4948 5104 4.961435 TTTCTTCGACATATGCATTGCA 57.039 36.364 14.72 14.72 44.86 4.08
4977 5133 6.004574 CCCTCTGCTAGTGTATCTGTATGTA 58.995 44.000 0.00 0.00 0.00 2.29
4979 5135 5.073428 TCCCTCTGCTAGTGTATCTGTATG 58.927 45.833 0.00 0.00 0.00 2.39
4987 5143 6.895756 TCTATTTTTCTCCCTCTGCTAGTGTA 59.104 38.462 0.00 0.00 0.00 2.90
4991 5147 7.504403 TCAATCTATTTTTCTCCCTCTGCTAG 58.496 38.462 0.00 0.00 0.00 3.42
5010 5166 9.032624 ACATGAGAAAGGAAATCATTTCAATCT 57.967 29.630 19.08 10.92 45.76 2.40
5059 5215 9.486497 ACATGTTTTGTCATATTTTGTGCAATA 57.514 25.926 0.00 0.00 30.89 1.90
5096 5253 0.714180 TGAGTTGAGGGGGCCTAGTA 59.286 55.000 0.84 0.00 31.76 1.82
5129 5286 3.507622 GCTCCTACTGGTTGCTTGATTTT 59.492 43.478 0.00 0.00 33.65 1.82
5171 5328 8.161699 ACAAGGACGTAAATGTACAATTCTTT 57.838 30.769 0.00 0.00 0.00 2.52
5182 5339 5.694910 ACACTTCTGTACAAGGACGTAAATG 59.305 40.000 0.00 0.00 0.00 2.32
5188 5345 3.364889 TGACACTTCTGTACAAGGACG 57.635 47.619 0.00 0.00 0.00 4.79
5193 5350 7.857734 TGATCTTTTTGACACTTCTGTACAA 57.142 32.000 0.00 0.00 0.00 2.41
5198 5355 8.954350 AGGATTATGATCTTTTTGACACTTCTG 58.046 33.333 0.00 0.00 32.66 3.02
5212 5369 8.211030 TGTCCATCAATGTAGGATTATGATCT 57.789 34.615 0.00 0.00 33.33 2.75
5230 5387 0.036022 GAGCTAGGGGCATGTCCATC 59.964 60.000 20.13 0.78 44.79 3.51
5257 5414 6.515832 TGCTATCACATGTCGAATTATGAGT 58.484 36.000 11.23 2.03 0.00 3.41
5366 5562 1.064758 TGTCCATGTGGCACCCTATTC 60.065 52.381 16.26 2.26 34.44 1.75
5419 5615 6.884836 GTCTCCAGATTTGTAGGTTTACCAAT 59.115 38.462 1.13 0.00 38.89 3.16
5439 5635 5.643379 TGAAATTGTGCATTTAGGTCTCC 57.357 39.130 0.00 0.00 35.02 3.71
5466 5662 0.603439 GGTTTTTACTCGGACCGCCA 60.603 55.000 9.66 0.00 0.00 5.69
5471 5667 2.817844 AGCATTGGGTTTTTACTCGGAC 59.182 45.455 0.00 0.00 0.00 4.79
5473 5669 3.934457 AAGCATTGGGTTTTTACTCGG 57.066 42.857 0.00 0.00 0.00 4.63
5494 5690 7.334090 AGAAGAAATGTGCATAGCTCTCTAAA 58.666 34.615 0.00 0.00 0.00 1.85
5640 5836 9.107367 GTCAGTCATTTTTCTTTTTGACTATCG 57.893 33.333 4.29 0.00 45.19 2.92
5641 5837 9.950680 TGTCAGTCATTTTTCTTTTTGACTATC 57.049 29.630 4.29 2.58 45.19 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.