Multiple sequence alignment - TraesCS2D01G032900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G032900 chr2D 100.000 5392 0 0 1 5392 12871115 12865724 0.000000e+00 9958.0
1 TraesCS2D01G032900 chr2D 86.005 786 62 27 4278 5043 12789485 12788728 0.000000e+00 798.0
2 TraesCS2D01G032900 chr2D 92.754 69 2 1 5311 5379 12787916 12787851 4.450000e-16 97.1
3 TraesCS2D01G032900 chr2A 92.837 2443 104 27 902 3306 14958594 14956185 0.000000e+00 3476.0
4 TraesCS2D01G032900 chr2A 92.663 1322 59 13 3296 4586 14956166 14954852 0.000000e+00 1869.0
5 TraesCS2D01G032900 chr2A 82.801 564 40 25 4663 5216 14954754 14954238 8.240000e-123 451.0
6 TraesCS2D01G032900 chr2A 86.969 353 19 12 204 549 14959376 14959044 6.600000e-99 372.0
7 TraesCS2D01G032900 chr2A 95.455 154 7 0 546 699 14959009 14958856 4.170000e-61 246.0
8 TraesCS2D01G032900 chr2A 82.639 144 8 9 721 864 14958786 14958660 1.590000e-20 111.0
9 TraesCS2D01G032900 chr2B 91.522 920 62 8 3296 4200 23543179 23542261 0.000000e+00 1253.0
10 TraesCS2D01G032900 chr2B 93.109 653 45 0 1624 2276 23544500 23543848 0.000000e+00 957.0
11 TraesCS2D01G032900 chr2B 90.030 662 30 13 2672 3306 23543850 23543198 0.000000e+00 824.0
12 TraesCS2D01G032900 chr2B 86.005 786 60 28 4211 4983 23542225 23541477 0.000000e+00 797.0
13 TraesCS2D01G032900 chr2B 88.525 366 16 10 864 1213 23545249 23544894 2.320000e-113 420.0
14 TraesCS2D01G032900 chr2B 89.051 137 8 5 5084 5216 23538527 23538394 4.320000e-36 163.0
15 TraesCS2D01G032900 chr2B 84.298 121 9 3 109 227 511555633 511555521 5.710000e-20 110.0
16 TraesCS2D01G032900 chr7B 88.327 514 29 9 2260 2746 377594855 377594346 6.020000e-164 588.0
17 TraesCS2D01G032900 chr5B 88.132 514 30 9 2260 2746 585013237 585012728 2.800000e-162 582.0
18 TraesCS2D01G032900 chr5B 87.280 511 33 10 2260 2742 660928704 660928198 6.100000e-154 555.0
19 TraesCS2D01G032900 chrUn 87.838 518 30 11 2256 2746 12455936 12455425 1.300000e-160 577.0
20 TraesCS2D01G032900 chr4B 87.938 514 31 10 2260 2746 177225662 177225153 1.300000e-160 577.0
21 TraesCS2D01G032900 chr3B 87.209 516 36 8 2257 2746 740858828 740859339 1.310000e-155 560.0
22 TraesCS2D01G032900 chr3A 87.329 513 35 8 2260 2746 361614342 361613834 1.310000e-155 560.0
23 TraesCS2D01G032900 chr7A 87.526 473 31 8 2260 2710 40833630 40833164 6.190000e-144 521.0
24 TraesCS2D01G032900 chr5D 84.298 121 9 3 109 227 278647146 278647034 5.710000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G032900 chr2D 12865724 12871115 5391 True 9958.000000 9958 100.0000 1 5392 1 chr2D.!!$R1 5391
1 TraesCS2D01G032900 chr2D 12787851 12789485 1634 True 447.550000 798 89.3795 4278 5379 2 chr2D.!!$R2 1101
2 TraesCS2D01G032900 chr2A 14954238 14959376 5138 True 1087.500000 3476 88.8940 204 5216 6 chr2A.!!$R1 5012
3 TraesCS2D01G032900 chr2B 23538394 23545249 6855 True 735.666667 1253 89.7070 864 5216 6 chr2B.!!$R2 4352
4 TraesCS2D01G032900 chr7B 377594346 377594855 509 True 588.000000 588 88.3270 2260 2746 1 chr7B.!!$R1 486
5 TraesCS2D01G032900 chr5B 585012728 585013237 509 True 582.000000 582 88.1320 2260 2746 1 chr5B.!!$R1 486
6 TraesCS2D01G032900 chr5B 660928198 660928704 506 True 555.000000 555 87.2800 2260 2742 1 chr5B.!!$R2 482
7 TraesCS2D01G032900 chrUn 12455425 12455936 511 True 577.000000 577 87.8380 2256 2746 1 chrUn.!!$R1 490
8 TraesCS2D01G032900 chr4B 177225153 177225662 509 True 577.000000 577 87.9380 2260 2746 1 chr4B.!!$R1 486
9 TraesCS2D01G032900 chr3B 740858828 740859339 511 False 560.000000 560 87.2090 2257 2746 1 chr3B.!!$F1 489
10 TraesCS2D01G032900 chr3A 361613834 361614342 508 True 560.000000 560 87.3290 2260 2746 1 chr3A.!!$R1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 422 0.032952 TTGTCCGGTGAGAAGGAACG 59.967 55.0 0.00 0.00 38.41 3.95 F
509 520 0.249238 ATCGACGGCTGCTTCATCTC 60.249 55.0 0.00 0.00 0.00 2.75 F
891 1041 0.249657 GTTCCGTTTTTGGCATGGCA 60.250 50.0 19.43 19.43 0.00 4.92 F
1675 1902 0.165944 AACGATGCGTGCAACTAAGC 59.834 50.0 0.00 0.00 39.99 3.09 F
1734 1961 0.249120 CGCAAGATACAGGGGTCACA 59.751 55.0 0.00 0.00 43.02 3.58 F
3066 3352 0.248289 AAAATGCATGCAGAGTGGCC 59.752 50.0 26.69 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1601 0.176910 TGATGTCCATCGGCGCTTTA 59.823 50.000 7.64 0.0 40.63 1.85 R
1657 1884 0.670546 AGCTTAGTTGCACGCATCGT 60.671 50.000 0.00 0.0 42.36 3.73 R
2167 2394 1.601419 CCAAACTGCCCAGCCATCAG 61.601 60.000 0.00 0.0 0.00 2.90 R
3066 3352 0.447801 CTCCGTTCCAATTTGAGGCG 59.552 55.000 0.00 0.0 0.00 5.52 R
3132 3418 3.485633 CTCATTGCACAATCTGTTGTCG 58.514 45.455 0.00 0.0 45.14 4.35 R
4607 4996 0.249996 GGAAGGAAACGGACGGACAA 60.250 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.500116 GGCTCCCGTGTCTCGAGC 62.500 72.222 7.81 3.58 42.86 5.03
18 19 3.749064 GCTCCCGTGTCTCGAGCA 61.749 66.667 7.81 6.50 42.86 4.26
19 20 2.179517 CTCCCGTGTCTCGAGCAC 59.820 66.667 22.27 22.27 42.86 4.40
35 36 4.521075 ACGGCCGTGATGATCAAG 57.479 55.556 33.75 0.00 0.00 3.02
36 37 1.897423 ACGGCCGTGATGATCAAGA 59.103 52.632 33.75 0.00 0.00 3.02
37 38 0.460284 ACGGCCGTGATGATCAAGAC 60.460 55.000 33.75 0.00 0.00 3.01
38 39 0.460109 CGGCCGTGATGATCAAGACA 60.460 55.000 19.50 0.00 0.00 3.41
39 40 1.293924 GGCCGTGATGATCAAGACAG 58.706 55.000 9.95 0.00 0.00 3.51
40 41 0.654683 GCCGTGATGATCAAGACAGC 59.345 55.000 9.95 0.00 0.00 4.40
41 42 0.926155 CCGTGATGATCAAGACAGCG 59.074 55.000 9.95 2.14 0.00 5.18
42 43 1.469767 CCGTGATGATCAAGACAGCGA 60.470 52.381 9.95 0.00 0.00 4.93
43 44 1.851053 CGTGATGATCAAGACAGCGAG 59.149 52.381 0.00 0.00 0.00 5.03
44 45 1.592081 GTGATGATCAAGACAGCGAGC 59.408 52.381 0.00 0.00 0.00 5.03
45 46 0.851495 GATGATCAAGACAGCGAGCG 59.149 55.000 0.00 0.00 0.00 5.03
46 47 0.174389 ATGATCAAGACAGCGAGCGT 59.826 50.000 0.00 0.00 0.00 5.07
47 48 0.456824 TGATCAAGACAGCGAGCGTC 60.457 55.000 0.00 10.45 0.00 5.19
48 49 1.467556 GATCAAGACAGCGAGCGTCG 61.468 60.000 11.88 3.50 43.89 5.12
59 60 2.749839 AGCGTCGCTGCTCTCTCT 60.750 61.111 21.02 0.00 42.95 3.10
60 61 2.180518 GCGTCGCTGCTCTCTCTT 59.819 61.111 10.68 0.00 0.00 2.85
61 62 2.157701 GCGTCGCTGCTCTCTCTTG 61.158 63.158 10.68 0.00 0.00 3.02
62 63 1.211449 CGTCGCTGCTCTCTCTTGT 59.789 57.895 0.00 0.00 0.00 3.16
63 64 0.796491 CGTCGCTGCTCTCTCTTGTC 60.796 60.000 0.00 0.00 0.00 3.18
64 65 0.796491 GTCGCTGCTCTCTCTTGTCG 60.796 60.000 0.00 0.00 0.00 4.35
65 66 2.157701 CGCTGCTCTCTCTTGTCGC 61.158 63.158 0.00 0.00 0.00 5.19
66 67 2.157701 GCTGCTCTCTCTTGTCGCG 61.158 63.158 0.00 0.00 0.00 5.87
67 68 1.515952 CTGCTCTCTCTTGTCGCGG 60.516 63.158 6.13 0.00 0.00 6.46
68 69 2.883253 GCTCTCTCTTGTCGCGGC 60.883 66.667 2.29 2.29 0.00 6.53
69 70 2.202676 CTCTCTCTTGTCGCGGCC 60.203 66.667 8.89 0.00 0.00 6.13
70 71 4.116328 TCTCTCTTGTCGCGGCCG 62.116 66.667 24.05 24.05 0.00 6.13
71 72 4.116328 CTCTCTTGTCGCGGCCGA 62.116 66.667 33.48 5.65 42.01 5.54
72 73 3.626680 CTCTCTTGTCGCGGCCGAA 62.627 63.158 33.48 13.91 46.34 4.30
73 74 2.509336 CTCTTGTCGCGGCCGAAT 60.509 61.111 33.48 0.00 46.34 3.34
74 75 2.047655 TCTTGTCGCGGCCGAATT 60.048 55.556 33.48 0.00 46.34 2.17
75 76 2.025359 CTCTTGTCGCGGCCGAATTC 62.025 60.000 33.48 15.89 46.34 2.17
76 77 3.420222 CTTGTCGCGGCCGAATTCG 62.420 63.158 33.48 23.27 46.34 3.34
77 78 3.918181 TTGTCGCGGCCGAATTCGA 62.918 57.895 33.48 25.37 46.34 3.71
78 79 3.617538 GTCGCGGCCGAATTCGAG 61.618 66.667 33.48 18.74 46.34 4.04
79 80 4.124351 TCGCGGCCGAATTCGAGT 62.124 61.111 33.48 0.00 41.17 4.18
80 81 2.278336 CGCGGCCGAATTCGAGTA 60.278 61.111 33.48 0.00 43.02 2.59
81 82 2.293627 CGCGGCCGAATTCGAGTAG 61.294 63.158 33.48 16.67 43.02 2.57
82 83 1.949631 GCGGCCGAATTCGAGTAGG 60.950 63.158 33.48 12.65 43.02 3.18
83 84 1.731700 CGGCCGAATTCGAGTAGGA 59.268 57.895 28.76 0.00 43.02 2.94
84 85 0.101759 CGGCCGAATTCGAGTAGGAA 59.898 55.000 28.76 0.00 43.02 3.36
85 86 1.854227 GGCCGAATTCGAGTAGGAAG 58.146 55.000 28.76 10.47 43.02 3.46
86 87 1.209998 GCCGAATTCGAGTAGGAAGC 58.790 55.000 28.76 16.37 43.02 3.86
87 88 1.478137 CCGAATTCGAGTAGGAAGCG 58.522 55.000 28.76 4.27 43.02 4.68
88 89 1.065102 CCGAATTCGAGTAGGAAGCGA 59.935 52.381 28.76 0.00 43.02 4.93
89 90 2.287668 CCGAATTCGAGTAGGAAGCGAT 60.288 50.000 28.76 0.00 43.02 4.58
90 91 2.974536 CGAATTCGAGTAGGAAGCGATC 59.025 50.000 23.29 0.00 43.02 3.69
91 92 4.152101 CGAATTCGAGTAGGAAGCGATCC 61.152 52.174 23.29 3.59 45.13 3.36
98 99 2.203126 GGAAGCGATCCCTGCAGG 60.203 66.667 26.87 26.87 43.00 4.85
99 100 2.586792 GAAGCGATCCCTGCAGGT 59.413 61.111 30.63 14.26 36.75 4.00
100 101 1.817099 GAAGCGATCCCTGCAGGTG 60.817 63.158 30.63 21.43 36.75 4.00
101 102 2.244117 GAAGCGATCCCTGCAGGTGA 62.244 60.000 30.63 25.59 36.75 4.02
102 103 1.630126 AAGCGATCCCTGCAGGTGAT 61.630 55.000 30.63 28.63 36.75 3.06
103 104 1.153086 GCGATCCCTGCAGGTGATT 60.153 57.895 30.63 16.04 36.75 2.57
104 105 1.162800 GCGATCCCTGCAGGTGATTC 61.163 60.000 30.63 20.80 36.75 2.52
105 106 0.533755 CGATCCCTGCAGGTGATTCC 60.534 60.000 30.63 18.42 36.75 3.01
107 108 0.842635 ATCCCTGCAGGTGATTCCTC 59.157 55.000 30.63 0.00 46.24 3.71
108 109 1.153289 CCCTGCAGGTGATTCCTCG 60.153 63.158 30.63 8.72 46.24 4.63
109 110 1.153289 CCTGCAGGTGATTCCTCGG 60.153 63.158 25.53 0.00 46.24 4.63
110 111 1.617018 CCTGCAGGTGATTCCTCGGA 61.617 60.000 25.53 0.00 46.24 4.55
111 112 0.460987 CTGCAGGTGATTCCTCGGAC 60.461 60.000 5.57 0.00 46.24 4.79
112 113 1.519455 GCAGGTGATTCCTCGGACG 60.519 63.158 0.00 0.00 46.24 4.79
113 114 1.945354 GCAGGTGATTCCTCGGACGA 61.945 60.000 0.00 0.00 46.24 4.20
114 115 0.530744 CAGGTGATTCCTCGGACGAA 59.469 55.000 0.00 0.00 46.24 3.85
115 116 0.818296 AGGTGATTCCTCGGACGAAG 59.182 55.000 0.00 0.00 44.42 3.79
116 117 0.179108 GGTGATTCCTCGGACGAAGG 60.179 60.000 0.00 0.29 0.00 3.46
117 118 0.806492 GTGATTCCTCGGACGAAGGC 60.806 60.000 0.00 0.00 0.00 4.35
118 119 1.254975 TGATTCCTCGGACGAAGGCA 61.255 55.000 0.00 0.00 0.00 4.75
119 120 0.108329 GATTCCTCGGACGAAGGCAA 60.108 55.000 0.00 0.00 0.00 4.52
120 121 0.108138 ATTCCTCGGACGAAGGCAAG 60.108 55.000 0.00 0.00 0.00 4.01
121 122 2.781595 TTCCTCGGACGAAGGCAAGC 62.782 60.000 0.00 0.00 0.00 4.01
122 123 2.048222 CTCGGACGAAGGCAAGCA 60.048 61.111 0.00 0.00 0.00 3.91
123 124 1.667830 CTCGGACGAAGGCAAGCAA 60.668 57.895 0.00 0.00 0.00 3.91
124 125 1.630244 CTCGGACGAAGGCAAGCAAG 61.630 60.000 0.00 0.00 0.00 4.01
125 126 1.667830 CGGACGAAGGCAAGCAAGA 60.668 57.895 0.00 0.00 0.00 3.02
126 127 1.869690 GGACGAAGGCAAGCAAGAC 59.130 57.895 0.00 0.00 0.00 3.01
127 128 1.493311 GACGAAGGCAAGCAAGACG 59.507 57.895 0.00 0.00 0.00 4.18
128 129 1.901650 GACGAAGGCAAGCAAGACGG 61.902 60.000 0.00 0.00 0.00 4.79
129 130 2.680913 CGAAGGCAAGCAAGACGGG 61.681 63.158 0.00 0.00 0.00 5.28
130 131 1.600916 GAAGGCAAGCAAGACGGGT 60.601 57.895 0.00 0.00 0.00 5.28
131 132 1.578206 GAAGGCAAGCAAGACGGGTC 61.578 60.000 0.00 0.00 0.00 4.46
132 133 2.032681 GGCAAGCAAGACGGGTCT 59.967 61.111 0.00 0.00 42.75 3.85
133 134 2.328099 GGCAAGCAAGACGGGTCTG 61.328 63.158 1.44 0.00 40.36 3.51
134 135 1.598130 GCAAGCAAGACGGGTCTGT 60.598 57.895 1.44 0.00 40.36 3.41
135 136 1.845809 GCAAGCAAGACGGGTCTGTG 61.846 60.000 1.44 4.72 40.36 3.66
136 137 0.532862 CAAGCAAGACGGGTCTGTGT 60.533 55.000 1.44 0.00 40.36 3.72
137 138 0.180406 AAGCAAGACGGGTCTGTGTT 59.820 50.000 1.44 0.00 40.36 3.32
138 139 0.180406 AGCAAGACGGGTCTGTGTTT 59.820 50.000 1.44 0.00 40.36 2.83
139 140 0.586802 GCAAGACGGGTCTGTGTTTC 59.413 55.000 1.44 0.00 40.36 2.78
140 141 1.810412 GCAAGACGGGTCTGTGTTTCT 60.810 52.381 1.44 0.00 40.36 2.52
141 142 2.135933 CAAGACGGGTCTGTGTTTCTC 58.864 52.381 1.44 0.00 40.36 2.87
142 143 1.705873 AGACGGGTCTGTGTTTCTCT 58.294 50.000 0.00 0.00 38.75 3.10
143 144 2.872732 AGACGGGTCTGTGTTTCTCTA 58.127 47.619 0.00 0.00 38.75 2.43
144 145 2.557490 AGACGGGTCTGTGTTTCTCTAC 59.443 50.000 0.00 0.00 38.75 2.59
145 146 1.268899 ACGGGTCTGTGTTTCTCTACG 59.731 52.381 0.00 0.00 0.00 3.51
146 147 1.402456 CGGGTCTGTGTTTCTCTACGG 60.402 57.143 0.00 0.00 0.00 4.02
147 148 1.067071 GGGTCTGTGTTTCTCTACGGG 60.067 57.143 0.00 0.00 0.00 5.28
148 149 1.672145 GGTCTGTGTTTCTCTACGGGC 60.672 57.143 0.00 0.00 0.00 6.13
149 150 1.272769 GTCTGTGTTTCTCTACGGGCT 59.727 52.381 0.00 0.00 0.00 5.19
150 151 1.272490 TCTGTGTTTCTCTACGGGCTG 59.728 52.381 0.00 0.00 0.00 4.85
151 152 0.320374 TGTGTTTCTCTACGGGCTGG 59.680 55.000 0.00 0.00 0.00 4.85
152 153 0.391263 GTGTTTCTCTACGGGCTGGG 60.391 60.000 0.00 0.00 0.00 4.45
153 154 1.449778 GTTTCTCTACGGGCTGGGC 60.450 63.158 0.00 0.00 0.00 5.36
154 155 1.612442 TTTCTCTACGGGCTGGGCT 60.612 57.895 0.00 0.00 0.00 5.19
155 156 1.899437 TTTCTCTACGGGCTGGGCTG 61.899 60.000 0.00 1.32 0.00 4.85
156 157 3.854669 CTCTACGGGCTGGGCTGG 61.855 72.222 7.84 0.00 0.00 4.85
157 158 4.715130 TCTACGGGCTGGGCTGGT 62.715 66.667 7.84 2.97 0.00 4.00
158 159 4.162690 CTACGGGCTGGGCTGGTC 62.163 72.222 7.84 0.00 0.00 4.02
169 170 4.162690 GCTGGTCCGGGCGAATCT 62.163 66.667 0.00 0.00 0.00 2.40
170 171 2.107141 CTGGTCCGGGCGAATCTC 59.893 66.667 0.00 0.00 0.00 2.75
171 172 3.447025 CTGGTCCGGGCGAATCTCC 62.447 68.421 0.00 0.00 0.00 3.71
172 173 3.155167 GGTCCGGGCGAATCTCCT 61.155 66.667 0.00 0.00 0.00 3.69
173 174 2.107141 GTCCGGGCGAATCTCCTG 59.893 66.667 0.00 0.00 0.00 3.86
174 175 3.849951 TCCGGGCGAATCTCCTGC 61.850 66.667 0.00 0.00 0.00 4.85
180 181 3.085208 GCGAATCTCCTGCCAATCA 57.915 52.632 0.00 0.00 0.00 2.57
181 182 1.382522 GCGAATCTCCTGCCAATCAA 58.617 50.000 0.00 0.00 0.00 2.57
182 183 1.952296 GCGAATCTCCTGCCAATCAAT 59.048 47.619 0.00 0.00 0.00 2.57
183 184 2.031333 GCGAATCTCCTGCCAATCAATC 60.031 50.000 0.00 0.00 0.00 2.67
184 185 3.208594 CGAATCTCCTGCCAATCAATCA 58.791 45.455 0.00 0.00 0.00 2.57
185 186 3.819337 CGAATCTCCTGCCAATCAATCAT 59.181 43.478 0.00 0.00 0.00 2.45
186 187 4.320275 CGAATCTCCTGCCAATCAATCATG 60.320 45.833 0.00 0.00 0.00 3.07
187 188 2.304092 TCTCCTGCCAATCAATCATGC 58.696 47.619 0.00 0.00 0.00 4.06
188 189 2.028876 CTCCTGCCAATCAATCATGCA 58.971 47.619 0.00 0.00 0.00 3.96
189 190 2.628178 CTCCTGCCAATCAATCATGCAT 59.372 45.455 0.00 0.00 0.00 3.96
190 191 2.364002 TCCTGCCAATCAATCATGCATG 59.636 45.455 21.07 21.07 0.00 4.06
191 192 2.135139 CTGCCAATCAATCATGCATGC 58.865 47.619 22.25 11.82 0.00 4.06
192 193 1.202592 TGCCAATCAATCATGCATGCC 60.203 47.619 22.25 0.00 0.00 4.40
193 194 1.778334 CCAATCAATCATGCATGCCG 58.222 50.000 22.25 12.08 0.00 5.69
194 195 1.067974 CCAATCAATCATGCATGCCGT 59.932 47.619 22.25 7.49 0.00 5.68
195 196 2.124122 CAATCAATCATGCATGCCGTG 58.876 47.619 22.25 17.61 0.00 4.94
196 197 1.395635 ATCAATCATGCATGCCGTGT 58.604 45.000 22.25 4.94 0.00 4.49
197 198 0.734309 TCAATCATGCATGCCGTGTC 59.266 50.000 22.25 0.00 0.00 3.67
198 199 0.452585 CAATCATGCATGCCGTGTCA 59.547 50.000 22.25 2.92 0.00 3.58
199 200 0.736636 AATCATGCATGCCGTGTCAG 59.263 50.000 22.25 0.00 0.00 3.51
200 201 0.393402 ATCATGCATGCCGTGTCAGT 60.393 50.000 22.25 0.72 0.00 3.41
201 202 1.135939 CATGCATGCCGTGTCAGTG 59.864 57.895 14.93 0.00 0.00 3.66
202 203 2.693762 ATGCATGCCGTGTCAGTGC 61.694 57.895 16.68 0.00 36.39 4.40
213 214 1.583404 GTGTCAGTGCGTTTTGCTTTG 59.417 47.619 0.00 0.00 46.63 2.77
255 256 4.800249 GCCCATCAATGTTTGAGCAAGAAA 60.800 41.667 0.00 0.00 43.98 2.52
273 274 4.583871 AGAAACTGAAGTAGCCATCCTTG 58.416 43.478 0.00 0.00 0.00 3.61
283 284 1.153289 CCATCCTTGGACTGGAGCG 60.153 63.158 10.57 0.00 46.92 5.03
323 327 5.955488 TGACTATGTACTCAACTCTCAAGC 58.045 41.667 0.00 0.00 0.00 4.01
324 328 5.712446 TGACTATGTACTCAACTCTCAAGCT 59.288 40.000 0.00 0.00 0.00 3.74
325 329 5.960113 ACTATGTACTCAACTCTCAAGCTG 58.040 41.667 0.00 0.00 0.00 4.24
326 330 4.881019 ATGTACTCAACTCTCAAGCTGT 57.119 40.909 0.00 0.00 0.00 4.40
327 331 4.672587 TGTACTCAACTCTCAAGCTGTT 57.327 40.909 0.00 0.00 0.00 3.16
328 332 5.023533 TGTACTCAACTCTCAAGCTGTTT 57.976 39.130 0.00 0.00 0.00 2.83
329 333 6.156748 TGTACTCAACTCTCAAGCTGTTTA 57.843 37.500 0.00 0.00 0.00 2.01
330 334 6.759272 TGTACTCAACTCTCAAGCTGTTTAT 58.241 36.000 0.00 0.00 0.00 1.40
331 335 7.217200 TGTACTCAACTCTCAAGCTGTTTATT 58.783 34.615 0.00 0.00 0.00 1.40
332 336 7.715249 TGTACTCAACTCTCAAGCTGTTTATTT 59.285 33.333 0.00 0.00 0.00 1.40
333 337 6.963796 ACTCAACTCTCAAGCTGTTTATTTG 58.036 36.000 0.00 0.00 0.00 2.32
334 338 5.762045 TCAACTCTCAAGCTGTTTATTTGC 58.238 37.500 0.00 0.00 0.00 3.68
335 339 5.299028 TCAACTCTCAAGCTGTTTATTTGCA 59.701 36.000 0.00 0.00 0.00 4.08
336 340 5.368256 ACTCTCAAGCTGTTTATTTGCAG 57.632 39.130 0.00 0.00 35.93 4.41
337 341 4.217118 ACTCTCAAGCTGTTTATTTGCAGG 59.783 41.667 0.00 0.00 33.62 4.85
404 408 5.882557 ACACATATGTCAGGAAAGATTGTCC 59.117 40.000 5.07 0.00 31.55 4.02
405 409 5.007039 CACATATGTCAGGAAAGATTGTCCG 59.993 44.000 5.07 0.00 40.36 4.79
418 422 0.032952 TTGTCCGGTGAGAAGGAACG 59.967 55.000 0.00 0.00 38.41 3.95
419 423 1.737008 GTCCGGTGAGAAGGAACGC 60.737 63.158 0.00 0.00 38.41 4.84
420 424 2.434359 CCGGTGAGAAGGAACGCC 60.434 66.667 0.00 0.00 0.00 5.68
422 426 2.434359 GGTGAGAAGGAACGCCGG 60.434 66.667 0.00 0.00 39.96 6.13
423 427 2.654877 GTGAGAAGGAACGCCGGA 59.345 61.111 5.05 0.00 39.96 5.14
424 428 1.005394 GTGAGAAGGAACGCCGGAA 60.005 57.895 5.05 0.00 39.96 4.30
425 429 1.005394 TGAGAAGGAACGCCGGAAC 60.005 57.895 5.05 0.00 39.96 3.62
492 503 3.309954 GCACGACAAAGGATAGGTTGATC 59.690 47.826 0.00 0.00 0.00 2.92
509 520 0.249238 ATCGACGGCTGCTTCATCTC 60.249 55.000 0.00 0.00 0.00 2.75
510 521 1.153765 CGACGGCTGCTTCATCTCA 60.154 57.895 0.00 0.00 0.00 3.27
512 523 1.005340 GACGGCTGCTTCATCTCAAG 58.995 55.000 0.00 0.00 0.00 3.02
538 549 2.280628 CAAATCCCTTCTAGCACGGTC 58.719 52.381 0.00 0.00 0.00 4.79
582 631 2.107031 TCGGGGTAGCAGTATGTAGCTA 59.893 50.000 0.00 0.00 42.05 3.32
656 705 8.124199 AGTTTTTGTGTTTGTATACTTGTACCG 58.876 33.333 4.17 0.00 0.00 4.02
677 726 2.583024 TCAATGCAACCAGTCCATGA 57.417 45.000 0.00 0.00 0.00 3.07
700 749 2.937519 TGTGTGTAAAACATGGGAGCA 58.062 42.857 0.00 0.00 41.97 4.26
701 750 2.621055 TGTGTGTAAAACATGGGAGCAC 59.379 45.455 0.00 0.38 41.97 4.40
702 751 2.884639 GTGTGTAAAACATGGGAGCACT 59.115 45.455 0.00 0.00 41.97 4.40
704 753 3.957497 TGTGTAAAACATGGGAGCACTTT 59.043 39.130 0.00 0.00 32.36 2.66
705 754 4.037446 TGTGTAAAACATGGGAGCACTTTC 59.963 41.667 0.00 0.00 32.36 2.62
706 755 3.572255 TGTAAAACATGGGAGCACTTTCC 59.428 43.478 0.00 0.00 36.46 3.13
714 763 2.861147 GGAGCACTTTCCCAAGTACT 57.139 50.000 0.00 0.00 41.69 2.73
715 764 3.975168 GGAGCACTTTCCCAAGTACTA 57.025 47.619 0.00 0.00 41.69 1.82
716 765 3.597255 GGAGCACTTTCCCAAGTACTAC 58.403 50.000 0.00 0.00 41.69 2.73
717 766 3.007614 GGAGCACTTTCCCAAGTACTACA 59.992 47.826 0.00 0.00 41.69 2.74
718 767 4.504340 GGAGCACTTTCCCAAGTACTACAA 60.504 45.833 0.00 0.00 41.69 2.41
719 768 5.242795 AGCACTTTCCCAAGTACTACAAT 57.757 39.130 0.00 0.00 41.69 2.71
732 829 7.119262 CCAAGTACTACAATAAAAGGTGACCTG 59.881 40.741 4.15 0.00 32.13 4.00
742 839 0.838122 AGGTGACCTGGTCCTTCTGG 60.838 60.000 23.42 0.00 29.57 3.86
756 853 8.331931 TGGTCCTTCTGGAAGTGTATATTATT 57.668 34.615 9.15 0.00 45.18 1.40
822 919 4.283467 TGTATAGGCAGTCAGTTCAACTGT 59.717 41.667 17.27 0.00 46.03 3.55
823 920 2.717639 AGGCAGTCAGTTCAACTGTT 57.282 45.000 17.27 4.59 46.03 3.16
824 921 2.292267 AGGCAGTCAGTTCAACTGTTG 58.708 47.619 17.27 16.48 46.03 3.33
825 922 2.017049 GGCAGTCAGTTCAACTGTTGT 58.983 47.619 17.27 0.60 46.03 3.32
826 923 2.423538 GGCAGTCAGTTCAACTGTTGTT 59.576 45.455 17.27 5.03 46.03 2.83
849 946 4.370364 TTTTTGAGGCAGTCAGTTCAAC 57.630 40.909 0.00 0.00 36.21 3.18
885 1035 1.365999 CCCTGGTTCCGTTTTTGGC 59.634 57.895 0.00 0.00 0.00 4.52
886 1036 1.395826 CCCTGGTTCCGTTTTTGGCA 61.396 55.000 0.00 0.00 0.00 4.92
887 1037 0.678950 CCTGGTTCCGTTTTTGGCAT 59.321 50.000 0.00 0.00 0.00 4.40
890 1040 0.948623 GGTTCCGTTTTTGGCATGGC 60.949 55.000 13.29 13.29 0.00 4.40
891 1041 0.249657 GTTCCGTTTTTGGCATGGCA 60.250 50.000 19.43 19.43 0.00 4.92
892 1042 0.465705 TTCCGTTTTTGGCATGGCAA 59.534 45.000 29.00 29.00 0.00 4.52
893 1043 0.249657 TCCGTTTTTGGCATGGCAAC 60.250 50.000 32.02 21.22 0.00 4.17
968 1120 1.238439 CGATCCAATTTCCATCCCCG 58.762 55.000 0.00 0.00 0.00 5.73
1128 1292 2.902846 GCTCGGCTCCTCTCGCTA 60.903 66.667 0.00 0.00 0.00 4.26
1191 1355 0.766131 TGGCCGACCCTTGTCTTTTA 59.234 50.000 0.00 0.00 39.47 1.52
1300 1464 1.281960 CACTGTTGAGCTGCTGTGC 59.718 57.895 7.01 0.00 0.00 4.57
1304 1468 2.595463 TTGAGCTGCTGTGCCCAC 60.595 61.111 7.01 0.00 0.00 4.61
1362 1527 9.137459 ACAAGTGTTATAGCTATCACTATGACT 57.863 33.333 21.92 13.11 38.98 3.41
1421 1586 1.517694 GTTCCGAGGTCGCGCATTA 60.518 57.895 8.75 0.00 38.18 1.90
1422 1587 0.874607 GTTCCGAGGTCGCGCATTAT 60.875 55.000 8.75 0.00 38.18 1.28
1448 1627 3.317150 TGTCTCATATAAAGCGCCGATG 58.683 45.455 2.29 0.66 0.00 3.84
1454 1633 1.512926 ATAAAGCGCCGATGGACATC 58.487 50.000 2.29 2.22 34.56 3.06
1537 1720 6.073003 GGAATGAGCGATTTATCAAAGGGTAG 60.073 42.308 0.00 0.00 0.00 3.18
1564 1752 8.398665 CAGATTTCAGTACCTGGTAAATTAAGC 58.601 37.037 8.40 4.45 31.51 3.09
1620 1808 0.676736 CCGATGGAGGCTCTAGGTTC 59.323 60.000 15.23 2.08 0.00 3.62
1621 1809 1.403814 CGATGGAGGCTCTAGGTTCA 58.596 55.000 15.23 2.73 0.00 3.18
1622 1810 1.067821 CGATGGAGGCTCTAGGTTCAC 59.932 57.143 15.23 0.00 0.00 3.18
1629 1856 1.208293 GGCTCTAGGTTCACCCTCTTG 59.792 57.143 0.00 0.00 44.81 3.02
1657 1884 4.058124 CAGATGTCGAGTTCTTTCCACAA 58.942 43.478 0.00 0.00 0.00 3.33
1675 1902 0.165944 AACGATGCGTGCAACTAAGC 59.834 50.000 0.00 0.00 39.99 3.09
1690 1917 7.865889 GTGCAACTAAGCTACCTTTTACATTTT 59.134 33.333 0.00 0.00 34.99 1.82
1716 1943 0.464036 TGTTGCTGCTAGGGGTATCG 59.536 55.000 0.00 0.00 0.00 2.92
1732 1959 2.985001 TCGCAAGATACAGGGGTCA 58.015 52.632 0.00 0.00 45.01 4.02
1734 1961 0.249120 CGCAAGATACAGGGGTCACA 59.751 55.000 0.00 0.00 43.02 3.58
1873 2100 5.276270 CACTTTCTGACATCAACCTGTTTG 58.724 41.667 0.00 0.00 36.42 2.93
1912 2139 4.507021 GGCTAATTAAGTACTCAACCTCGC 59.493 45.833 0.00 0.00 0.00 5.03
1933 2160 3.477210 CTTCTATAGGAACACCCAGGC 57.523 52.381 0.00 0.00 37.41 4.85
1944 2171 0.465287 CACCCAGGCTGCAAAGTTTT 59.535 50.000 9.56 0.00 0.00 2.43
2101 2328 1.678728 CCTGGCGATTTGAGGTAAGCA 60.679 52.381 0.00 0.00 0.00 3.91
2167 2394 2.032981 CCAGTTTGTGGTCACTGCC 58.967 57.895 2.66 0.00 42.17 4.85
2173 2400 0.250858 TTGTGGTCACTGCCTGATGG 60.251 55.000 2.66 0.00 0.00 3.51
2196 2423 1.034292 GGCAGTTTGGGCTGAGATCC 61.034 60.000 0.00 0.00 38.70 3.36
2204 2431 1.348008 GGGCTGAGATCCCACATCCA 61.348 60.000 7.14 0.00 43.37 3.41
2342 2579 9.851686 AATGTTTGATGTATGTATGTATGGTCT 57.148 29.630 0.00 0.00 0.00 3.85
2343 2580 9.851686 ATGTTTGATGTATGTATGTATGGTCTT 57.148 29.630 0.00 0.00 0.00 3.01
2356 2593 1.838112 TGGTCTTTGATGGTGGCATC 58.162 50.000 0.00 0.00 0.00 3.91
2363 2600 3.596310 TTGATGGTGGCATCAAATGTG 57.404 42.857 3.70 0.00 45.33 3.21
2502 2741 6.074088 GCAATGTCAGTATCATAGTGCTGTAC 60.074 42.308 0.00 0.00 34.06 2.90
2536 2775 3.574614 GGAAATGTGTGGTGTAACATGC 58.425 45.455 0.00 0.00 39.98 4.06
2614 2873 9.678941 TTATCTTGATTCTAATACAGCTACGTG 57.321 33.333 0.00 0.00 0.00 4.49
2645 2904 6.747414 ACTGCTATGGGACTTCATATTGTA 57.253 37.500 0.00 0.00 0.00 2.41
2751 3021 4.755123 ACCAAAAACTGTTCGATGGACTAG 59.245 41.667 19.66 0.00 0.00 2.57
2936 3222 4.649692 AGTTCTGCATCTCAATGAACTGT 58.350 39.130 12.80 0.00 43.56 3.55
3035 3321 4.142534 GCATATCATGGGCATGTGATGTAC 60.143 45.833 6.76 0.00 39.72 2.90
3066 3352 0.248289 AAAATGCATGCAGAGTGGCC 59.752 50.000 26.69 0.00 0.00 5.36
3132 3418 5.897050 AGTACTGCTCTTTATGACTGTAGC 58.103 41.667 0.00 0.00 0.00 3.58
3280 3574 5.306532 AGTATGCAGCTTCAGATTTGTTG 57.693 39.130 0.00 0.00 0.00 3.33
3407 3730 3.181440 TGCAGGATTGTCCATCTATTCCC 60.181 47.826 0.00 0.00 39.61 3.97
3516 3839 8.700051 CAGGACTTTATATATCCTCCACCTATG 58.300 40.741 1.04 0.00 41.07 2.23
3550 3873 7.493743 TGTTTAAAATTGCAAGCATGAACAT 57.506 28.000 4.94 0.00 0.00 2.71
3669 3992 2.432628 GGAACACTGGACTCGCGG 60.433 66.667 6.13 0.00 0.00 6.46
3684 4007 1.346395 TCGCGGCCAGACCATATTATT 59.654 47.619 6.13 0.00 39.03 1.40
3693 4016 8.204160 CGGCCAGACCATATTATTAATCAGATA 58.796 37.037 2.24 0.00 39.03 1.98
3895 4224 8.054152 TGCATCATGTGAGTTGTAATGTTATT 57.946 30.769 0.00 0.00 0.00 1.40
3921 4250 0.829333 ATTCTCAGGATGCAGCGTCT 59.171 50.000 14.44 0.00 34.76 4.18
3949 4278 7.160049 TGCAATTGCCATAATGAAAAAGAGAA 58.840 30.769 26.94 0.00 41.18 2.87
4044 4378 3.651803 ACTGGTATTCATCTAGCTCGC 57.348 47.619 0.00 0.00 0.00 5.03
4120 4464 4.202233 TGCATGAATTTGAACTTTGCAGGA 60.202 37.500 0.00 0.00 0.00 3.86
4122 4466 5.107220 GCATGAATTTGAACTTTGCAGGAAG 60.107 40.000 0.00 0.00 0.00 3.46
4204 4548 2.347731 GTTAGTTTCCTTCCTGCTCCG 58.652 52.381 0.00 0.00 0.00 4.63
4238 4607 3.014036 GGTGCGCATACATCACCG 58.986 61.111 15.91 0.00 40.54 4.94
4247 4618 3.615056 CGCATACATCACCGTTTCTTGTA 59.385 43.478 0.00 0.00 0.00 2.41
4248 4619 4.259810 CGCATACATCACCGTTTCTTGTAG 60.260 45.833 0.00 0.00 0.00 2.74
4249 4620 4.630069 GCATACATCACCGTTTCTTGTAGT 59.370 41.667 0.00 0.00 0.00 2.73
4250 4621 5.808540 GCATACATCACCGTTTCTTGTAGTA 59.191 40.000 0.00 0.00 0.00 1.82
4251 4622 6.311935 GCATACATCACCGTTTCTTGTAGTAA 59.688 38.462 0.00 0.00 0.00 2.24
4252 4623 7.011109 GCATACATCACCGTTTCTTGTAGTAAT 59.989 37.037 0.00 0.00 0.00 1.89
4253 4624 9.524106 CATACATCACCGTTTCTTGTAGTAATA 57.476 33.333 0.00 0.00 0.00 0.98
4289 4660 2.761208 CACCTTCTCTTCAGGTACCGAT 59.239 50.000 6.18 0.00 43.30 4.18
4393 4764 0.793478 CTCGGCGTCGACAGTTAGTG 60.793 60.000 8.66 0.00 40.88 2.74
4420 4791 4.500477 GGTCGCATATGTTGAGCAAATTTC 59.500 41.667 18.37 0.47 0.00 2.17
4443 4814 5.045869 TCCTTTGTTACCCTGAGTGAATAGG 60.046 44.000 0.00 0.00 0.00 2.57
4444 4815 3.906720 TGTTACCCTGAGTGAATAGGC 57.093 47.619 0.00 0.00 32.58 3.93
4445 4816 2.504175 TGTTACCCTGAGTGAATAGGCC 59.496 50.000 0.00 0.00 32.58 5.19
4446 4817 2.504175 GTTACCCTGAGTGAATAGGCCA 59.496 50.000 5.01 0.00 32.58 5.36
4454 4838 3.181440 TGAGTGAATAGGCCAATGGGATC 60.181 47.826 5.01 0.00 35.59 3.36
4466 4850 3.369471 CCAATGGGATCTGTTGTCGTACT 60.369 47.826 0.00 0.00 35.59 2.73
4467 4851 3.802948 ATGGGATCTGTTGTCGTACTC 57.197 47.619 0.00 0.00 0.00 2.59
4468 4852 1.471287 TGGGATCTGTTGTCGTACTCG 59.529 52.381 0.00 0.00 38.55 4.18
4471 4855 3.486542 GGGATCTGTTGTCGTACTCGTAC 60.487 52.174 0.00 0.00 38.33 3.67
4472 4856 3.486542 GGATCTGTTGTCGTACTCGTACC 60.487 52.174 1.92 0.00 38.33 3.34
4473 4857 2.493035 TCTGTTGTCGTACTCGTACCA 58.507 47.619 1.92 0.00 38.33 3.25
4474 4858 2.224079 TCTGTTGTCGTACTCGTACCAC 59.776 50.000 1.92 0.43 38.33 4.16
4475 4859 2.221169 TGTTGTCGTACTCGTACCACT 58.779 47.619 6.54 0.00 38.33 4.00
4487 4871 1.673920 CGTACCACTGGTTTTGTTGCT 59.326 47.619 5.90 0.00 37.09 3.91
4590 4979 7.655328 GTCATCCTCTGTTCGATTTTCTGATAT 59.345 37.037 0.00 0.00 0.00 1.63
4601 4990 6.754675 TCGATTTTCTGATATACTTTGTCGCA 59.245 34.615 0.00 0.00 0.00 5.10
4607 4996 6.040247 TCTGATATACTTTGTCGCATTCGTT 58.960 36.000 0.00 0.00 36.96 3.85
4609 4998 6.474364 TGATATACTTTGTCGCATTCGTTTG 58.526 36.000 0.00 0.00 36.96 2.93
4625 5036 1.262417 GTTTGTCCGTCCGTTTCCTTC 59.738 52.381 0.00 0.00 0.00 3.46
4706 5125 3.570550 CCGATTTTGGTTTCCTGGTACAA 59.429 43.478 0.00 0.00 38.70 2.41
4804 5225 7.147811 ACCAATTGTTCTTTTTAACTGGTAGCA 60.148 33.333 4.43 0.00 35.08 3.49
4809 5232 5.043737 TCTTTTTAACTGGTAGCACCACT 57.956 39.130 4.16 0.00 44.79 4.00
4810 5233 5.061179 TCTTTTTAACTGGTAGCACCACTC 58.939 41.667 4.16 0.00 44.79 3.51
4811 5234 4.699925 TTTTAACTGGTAGCACCACTCT 57.300 40.909 4.16 0.00 44.79 3.24
4812 5235 4.699925 TTTAACTGGTAGCACCACTCTT 57.300 40.909 4.16 0.69 44.79 2.85
4813 5236 2.550830 AACTGGTAGCACCACTCTTG 57.449 50.000 4.16 0.00 44.79 3.02
4814 5237 0.687354 ACTGGTAGCACCACTCTTGG 59.313 55.000 4.16 0.00 44.79 3.61
4815 5238 0.976641 CTGGTAGCACCACTCTTGGA 59.023 55.000 4.16 0.00 44.79 3.53
4846 5269 0.651551 TTTTGTCCGAAACCACGTCG 59.348 50.000 0.00 0.00 38.24 5.12
4899 5324 2.335316 TCCCACCAACAACACAGTAC 57.665 50.000 0.00 0.00 0.00 2.73
5042 5468 5.836821 GTGAAACTCTGTTTTTCCCTTCT 57.163 39.130 0.00 0.00 32.83 2.85
5043 5469 6.208988 GTGAAACTCTGTTTTTCCCTTCTT 57.791 37.500 0.00 0.00 32.83 2.52
5044 5470 6.266323 GTGAAACTCTGTTTTTCCCTTCTTC 58.734 40.000 0.00 0.00 32.83 2.87
5045 5471 6.095580 GTGAAACTCTGTTTTTCCCTTCTTCT 59.904 38.462 0.00 0.00 32.83 2.85
5046 5472 6.663523 TGAAACTCTGTTTTTCCCTTCTTCTT 59.336 34.615 0.00 0.00 32.83 2.52
5047 5473 7.178451 TGAAACTCTGTTTTTCCCTTCTTCTTT 59.822 33.333 0.00 0.00 32.83 2.52
5048 5474 7.482169 AACTCTGTTTTTCCCTTCTTCTTTT 57.518 32.000 0.00 0.00 0.00 2.27
5049 5475 7.482169 ACTCTGTTTTTCCCTTCTTCTTTTT 57.518 32.000 0.00 0.00 0.00 1.94
5078 5504 8.214364 AGAAGACTGTTTTTCCTTCTACATCTT 58.786 33.333 6.85 0.00 42.28 2.40
5088 8433 4.398358 TCCTTCTACATCTTGTACCTGACG 59.602 45.833 0.00 0.00 0.00 4.35
5098 8443 3.839046 TACCTGACGTGTGGGCCCT 62.839 63.158 25.70 0.15 0.00 5.19
5109 8454 1.308657 TGGGCCCTGGTGTCCATAT 60.309 57.895 25.70 0.00 30.82 1.78
5196 8544 1.676916 GCCTTGATGTCAGTGCTGCTA 60.677 52.381 0.00 0.00 0.00 3.49
5197 8545 2.277969 CCTTGATGTCAGTGCTGCTAG 58.722 52.381 0.00 0.00 0.00 3.42
5200 8548 4.498241 CTTGATGTCAGTGCTGCTAGTAA 58.502 43.478 0.00 0.00 0.00 2.24
5201 8549 4.115401 TGATGTCAGTGCTGCTAGTAAG 57.885 45.455 0.00 0.00 0.00 2.34
5202 8550 3.511540 TGATGTCAGTGCTGCTAGTAAGT 59.488 43.478 0.00 0.00 0.00 2.24
5203 8551 4.705023 TGATGTCAGTGCTGCTAGTAAGTA 59.295 41.667 0.00 0.00 0.00 2.24
5204 8552 5.185056 TGATGTCAGTGCTGCTAGTAAGTAA 59.815 40.000 0.00 0.00 0.00 2.24
5205 8553 5.462530 TGTCAGTGCTGCTAGTAAGTAAA 57.537 39.130 0.00 0.00 0.00 2.01
5206 8554 5.227908 TGTCAGTGCTGCTAGTAAGTAAAC 58.772 41.667 0.00 0.00 0.00 2.01
5207 8555 5.221362 TGTCAGTGCTGCTAGTAAGTAAACA 60.221 40.000 0.00 0.00 0.00 2.83
5208 8556 5.694910 GTCAGTGCTGCTAGTAAGTAAACAA 59.305 40.000 0.00 0.00 0.00 2.83
5209 8557 6.202188 GTCAGTGCTGCTAGTAAGTAAACAAA 59.798 38.462 0.00 0.00 0.00 2.83
5210 8558 6.423905 TCAGTGCTGCTAGTAAGTAAACAAAG 59.576 38.462 0.00 0.00 0.00 2.77
5211 8559 6.202954 CAGTGCTGCTAGTAAGTAAACAAAGT 59.797 38.462 0.00 0.00 0.00 2.66
5212 8560 6.202954 AGTGCTGCTAGTAAGTAAACAAAGTG 59.797 38.462 0.00 0.00 0.00 3.16
5213 8561 5.049680 TGCTGCTAGTAAGTAAACAAAGTGC 60.050 40.000 0.00 0.00 0.00 4.40
5214 8562 5.179555 GCTGCTAGTAAGTAAACAAAGTGCT 59.820 40.000 0.00 0.00 0.00 4.40
5215 8563 6.618805 GCTGCTAGTAAGTAAACAAAGTGCTC 60.619 42.308 0.00 0.00 0.00 4.26
5216 8564 5.699458 TGCTAGTAAGTAAACAAAGTGCTCC 59.301 40.000 0.00 0.00 0.00 4.70
5217 8565 5.121925 GCTAGTAAGTAAACAAAGTGCTCCC 59.878 44.000 0.00 0.00 0.00 4.30
5218 8566 4.395625 AGTAAGTAAACAAAGTGCTCCCC 58.604 43.478 0.00 0.00 0.00 4.81
5219 8567 3.595190 AAGTAAACAAAGTGCTCCCCT 57.405 42.857 0.00 0.00 0.00 4.79
5220 8568 3.141767 AGTAAACAAAGTGCTCCCCTC 57.858 47.619 0.00 0.00 0.00 4.30
5221 8569 2.711547 AGTAAACAAAGTGCTCCCCTCT 59.288 45.455 0.00 0.00 0.00 3.69
5222 8570 2.755952 AAACAAAGTGCTCCCCTCTT 57.244 45.000 0.00 0.00 0.00 2.85
5223 8571 2.278332 AACAAAGTGCTCCCCTCTTC 57.722 50.000 0.00 0.00 0.00 2.87
5224 8572 1.140312 ACAAAGTGCTCCCCTCTTCA 58.860 50.000 0.00 0.00 0.00 3.02
5225 8573 1.707427 ACAAAGTGCTCCCCTCTTCAT 59.293 47.619 0.00 0.00 0.00 2.57
5226 8574 2.108952 ACAAAGTGCTCCCCTCTTCATT 59.891 45.455 0.00 0.00 0.00 2.57
5227 8575 3.160269 CAAAGTGCTCCCCTCTTCATTT 58.840 45.455 0.00 0.00 0.00 2.32
5228 8576 2.797177 AGTGCTCCCCTCTTCATTTC 57.203 50.000 0.00 0.00 0.00 2.17
5229 8577 2.273619 AGTGCTCCCCTCTTCATTTCT 58.726 47.619 0.00 0.00 0.00 2.52
5230 8578 2.238395 AGTGCTCCCCTCTTCATTTCTC 59.762 50.000 0.00 0.00 0.00 2.87
5231 8579 2.026822 GTGCTCCCCTCTTCATTTCTCA 60.027 50.000 0.00 0.00 0.00 3.27
5235 8583 4.524328 GCTCCCCTCTTCATTTCTCAAAAA 59.476 41.667 0.00 0.00 0.00 1.94
5256 8948 0.034896 AAAAGTGCTCGGTCGATGGT 59.965 50.000 0.00 0.00 0.00 3.55
5259 8951 3.822192 TGCTCGGTCGATGGTCGG 61.822 66.667 0.00 0.00 40.88 4.79
5274 8966 2.735857 CGGGGTTTGACCGTCGAC 60.736 66.667 5.18 5.18 46.03 4.20
5275 8967 2.357881 GGGGTTTGACCGTCGACC 60.358 66.667 10.58 13.07 39.83 4.79
5285 8977 4.093952 CGTCGACCGGCGTGTACT 62.094 66.667 10.58 0.00 41.80 2.73
5286 8978 2.202401 GTCGACCGGCGTGTACTC 60.202 66.667 16.00 0.00 41.80 2.59
5287 8979 2.359107 TCGACCGGCGTGTACTCT 60.359 61.111 16.00 0.00 41.80 3.24
5288 8980 2.099831 CGACCGGCGTGTACTCTC 59.900 66.667 6.01 0.00 34.64 3.20
5290 8982 2.670934 ACCGGCGTGTACTCTCGT 60.671 61.111 6.01 0.00 33.82 4.18
5294 8986 1.080705 GGCGTGTACTCTCGTTGCT 60.081 57.895 0.00 0.00 33.82 3.91
5295 8987 0.169672 GGCGTGTACTCTCGTTGCTA 59.830 55.000 0.00 0.00 33.82 3.49
5297 8989 2.527100 GCGTGTACTCTCGTTGCTAAT 58.473 47.619 0.00 0.00 33.82 1.73
5299 8991 3.754955 CGTGTACTCTCGTTGCTAATGA 58.245 45.455 0.00 0.00 0.00 2.57
5300 8992 4.352039 CGTGTACTCTCGTTGCTAATGAT 58.648 43.478 0.00 0.00 0.00 2.45
5302 8994 5.621634 CGTGTACTCTCGTTGCTAATGATAG 59.378 44.000 0.00 0.00 0.00 2.08
5303 8995 6.496571 GTGTACTCTCGTTGCTAATGATAGT 58.503 40.000 11.19 11.19 37.53 2.12
5306 8998 7.713942 TGTACTCTCGTTGCTAATGATAGTAGA 59.286 37.037 12.38 10.26 37.02 2.59
5307 8999 7.569639 ACTCTCGTTGCTAATGATAGTAGAA 57.430 36.000 7.09 0.00 33.60 2.10
5308 9000 7.997482 ACTCTCGTTGCTAATGATAGTAGAAA 58.003 34.615 7.09 0.00 33.60 2.52
5309 9001 8.467598 ACTCTCGTTGCTAATGATAGTAGAAAA 58.532 33.333 7.09 0.00 33.60 2.29
5338 9102 7.883391 TTAGCTGAGATTTACTACTACTGCT 57.117 36.000 0.00 0.00 0.00 4.24
5367 9131 2.039974 GCCATCGCCATGTCACACA 61.040 57.895 0.00 0.00 0.00 3.72
5382 9146 2.615774 CACAAGTGTGCATGTCCGA 58.384 52.632 0.00 0.00 39.39 4.55
5383 9147 0.514255 CACAAGTGTGCATGTCCGAG 59.486 55.000 0.00 0.00 39.39 4.63
5384 9148 0.392706 ACAAGTGTGCATGTCCGAGA 59.607 50.000 0.00 0.00 0.00 4.04
5385 9149 1.202639 ACAAGTGTGCATGTCCGAGAA 60.203 47.619 0.00 0.00 0.00 2.87
5386 9150 1.462283 CAAGTGTGCATGTCCGAGAAG 59.538 52.381 0.00 0.00 0.00 2.85
5387 9151 0.671781 AGTGTGCATGTCCGAGAAGC 60.672 55.000 0.00 0.00 0.00 3.86
5388 9152 0.950555 GTGTGCATGTCCGAGAAGCA 60.951 55.000 0.00 0.00 0.00 3.91
5389 9153 0.671472 TGTGCATGTCCGAGAAGCAG 60.671 55.000 0.00 0.00 35.66 4.24
5390 9154 1.742880 TGCATGTCCGAGAAGCAGC 60.743 57.895 0.00 0.00 0.00 5.25
5391 9155 2.806856 GCATGTCCGAGAAGCAGCG 61.807 63.158 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.500116 GCTCGAGACACGGGAGCC 62.500 72.222 18.75 0.00 46.62 4.70
1 2 3.749064 TGCTCGAGACACGGGAGC 61.749 66.667 18.75 5.37 46.62 4.70
2 3 2.179517 GTGCTCGAGACACGGGAG 59.820 66.667 18.75 0.00 46.62 4.30
11 12 4.498520 ATCACGGCCGTGCTCGAG 62.499 66.667 45.55 26.77 45.04 4.04
12 13 4.794439 CATCACGGCCGTGCTCGA 62.794 66.667 45.55 32.38 45.04 4.04
13 14 4.794439 TCATCACGGCCGTGCTCG 62.794 66.667 45.55 34.81 45.04 5.03
14 15 2.202932 ATCATCACGGCCGTGCTC 60.203 61.111 45.55 0.00 45.04 4.26
15 16 2.202932 GATCATCACGGCCGTGCT 60.203 61.111 45.55 37.37 45.04 4.40
16 17 2.040213 CTTGATCATCACGGCCGTGC 62.040 60.000 45.55 33.02 45.04 5.34
17 18 0.460109 TCTTGATCATCACGGCCGTG 60.460 55.000 45.04 45.04 46.64 4.94
18 19 0.460284 GTCTTGATCATCACGGCCGT 60.460 55.000 28.70 28.70 0.00 5.68
19 20 0.460109 TGTCTTGATCATCACGGCCG 60.460 55.000 26.86 26.86 0.00 6.13
20 21 1.293924 CTGTCTTGATCATCACGGCC 58.706 55.000 0.00 0.00 0.00 6.13
21 22 0.654683 GCTGTCTTGATCATCACGGC 59.345 55.000 17.96 17.96 34.13 5.68
22 23 0.926155 CGCTGTCTTGATCATCACGG 59.074 55.000 0.00 2.56 0.00 4.94
23 24 1.851053 CTCGCTGTCTTGATCATCACG 59.149 52.381 0.00 4.50 0.00 4.35
24 25 1.592081 GCTCGCTGTCTTGATCATCAC 59.408 52.381 0.00 0.00 0.00 3.06
25 26 1.800286 CGCTCGCTGTCTTGATCATCA 60.800 52.381 0.00 0.00 0.00 3.07
26 27 0.851495 CGCTCGCTGTCTTGATCATC 59.149 55.000 0.00 0.00 0.00 2.92
27 28 0.174389 ACGCTCGCTGTCTTGATCAT 59.826 50.000 0.00 0.00 0.00 2.45
28 29 0.456824 GACGCTCGCTGTCTTGATCA 60.457 55.000 0.00 0.00 33.54 2.92
29 30 1.467556 CGACGCTCGCTGTCTTGATC 61.468 60.000 10.43 0.00 34.17 2.92
30 31 1.515088 CGACGCTCGCTGTCTTGAT 60.515 57.895 10.43 0.00 34.17 2.57
31 32 2.126850 CGACGCTCGCTGTCTTGA 60.127 61.111 10.43 0.00 34.17 3.02
43 44 2.157701 CAAGAGAGAGCAGCGACGC 61.158 63.158 13.03 13.03 0.00 5.19
44 45 0.796491 GACAAGAGAGAGCAGCGACG 60.796 60.000 0.00 0.00 0.00 5.12
45 46 0.796491 CGACAAGAGAGAGCAGCGAC 60.796 60.000 0.00 0.00 0.00 5.19
46 47 1.503994 CGACAAGAGAGAGCAGCGA 59.496 57.895 0.00 0.00 0.00 4.93
47 48 2.157701 GCGACAAGAGAGAGCAGCG 61.158 63.158 0.00 0.00 0.00 5.18
48 49 2.157701 CGCGACAAGAGAGAGCAGC 61.158 63.158 0.00 0.00 0.00 5.25
49 50 1.515952 CCGCGACAAGAGAGAGCAG 60.516 63.158 8.23 0.00 0.00 4.24
50 51 2.568612 CCGCGACAAGAGAGAGCA 59.431 61.111 8.23 0.00 0.00 4.26
51 52 2.883253 GCCGCGACAAGAGAGAGC 60.883 66.667 8.23 0.00 0.00 4.09
52 53 2.202676 GGCCGCGACAAGAGAGAG 60.203 66.667 8.23 0.00 0.00 3.20
53 54 4.116328 CGGCCGCGACAAGAGAGA 62.116 66.667 14.67 0.00 0.00 3.10
54 55 2.890847 ATTCGGCCGCGACAAGAGAG 62.891 60.000 23.51 0.00 0.00 3.20
55 56 2.501223 AATTCGGCCGCGACAAGAGA 62.501 55.000 23.51 0.00 0.00 3.10
56 57 2.025359 GAATTCGGCCGCGACAAGAG 62.025 60.000 23.51 0.00 0.00 2.85
57 58 2.047655 AATTCGGCCGCGACAAGA 60.048 55.556 23.51 0.00 0.00 3.02
58 59 2.399611 GAATTCGGCCGCGACAAG 59.600 61.111 23.51 0.00 0.00 3.16
59 60 3.483665 CGAATTCGGCCGCGACAA 61.484 61.111 23.51 10.36 35.37 3.18
60 61 4.423022 TCGAATTCGGCCGCGACA 62.423 61.111 26.47 0.00 40.29 4.35
61 62 2.924922 TACTCGAATTCGGCCGCGAC 62.925 60.000 26.47 10.73 40.29 5.19
62 63 2.657484 CTACTCGAATTCGGCCGCGA 62.657 60.000 26.47 22.24 40.29 5.87
63 64 2.278336 TACTCGAATTCGGCCGCG 60.278 61.111 26.47 18.88 40.29 6.46
64 65 1.949631 CCTACTCGAATTCGGCCGC 60.950 63.158 26.47 5.12 40.29 6.53
65 66 0.101759 TTCCTACTCGAATTCGGCCG 59.898 55.000 26.47 22.12 40.29 6.13
66 67 1.854227 CTTCCTACTCGAATTCGGCC 58.146 55.000 26.47 0.00 40.29 6.13
67 68 1.209998 GCTTCCTACTCGAATTCGGC 58.790 55.000 26.47 15.55 40.29 5.54
68 69 1.065102 TCGCTTCCTACTCGAATTCGG 59.935 52.381 26.47 18.95 40.29 4.30
69 70 2.470196 TCGCTTCCTACTCGAATTCG 57.530 50.000 21.78 21.78 41.45 3.34
70 71 3.310246 GGATCGCTTCCTACTCGAATTC 58.690 50.000 0.00 0.00 41.78 2.17
71 72 2.036089 GGGATCGCTTCCTACTCGAATT 59.964 50.000 1.84 0.00 44.75 2.17
72 73 1.614413 GGGATCGCTTCCTACTCGAAT 59.386 52.381 1.84 0.00 44.75 3.34
73 74 1.030457 GGGATCGCTTCCTACTCGAA 58.970 55.000 1.84 0.00 44.75 3.71
74 75 0.183014 AGGGATCGCTTCCTACTCGA 59.817 55.000 6.44 0.00 44.75 4.04
75 76 0.312416 CAGGGATCGCTTCCTACTCG 59.688 60.000 10.01 0.00 44.75 4.18
76 77 0.032815 GCAGGGATCGCTTCCTACTC 59.967 60.000 10.01 0.00 44.75 2.59
77 78 0.687757 TGCAGGGATCGCTTCCTACT 60.688 55.000 10.01 0.00 44.75 2.57
78 79 0.249657 CTGCAGGGATCGCTTCCTAC 60.250 60.000 10.01 0.00 44.75 3.18
79 80 1.402896 CCTGCAGGGATCGCTTCCTA 61.403 60.000 26.14 0.00 44.75 2.94
80 81 2.739996 CCTGCAGGGATCGCTTCCT 61.740 63.158 26.14 0.00 44.75 3.36
81 82 2.203126 CCTGCAGGGATCGCTTCC 60.203 66.667 26.14 4.98 44.62 3.46
82 83 1.817099 CACCTGCAGGGATCGCTTC 60.817 63.158 35.42 5.97 40.27 3.86
83 84 1.630126 ATCACCTGCAGGGATCGCTT 61.630 55.000 35.42 11.03 40.27 4.68
84 85 1.630126 AATCACCTGCAGGGATCGCT 61.630 55.000 35.42 16.88 40.27 4.93
85 86 1.153086 AATCACCTGCAGGGATCGC 60.153 57.895 35.42 0.54 40.27 4.58
86 87 0.533755 GGAATCACCTGCAGGGATCG 60.534 60.000 35.42 20.49 40.27 3.69
87 88 3.410960 GGAATCACCTGCAGGGATC 57.589 57.895 35.42 24.65 40.27 3.36
97 98 0.179108 CCTTCGTCCGAGGAATCACC 60.179 60.000 4.07 0.00 39.35 4.02
98 99 0.806492 GCCTTCGTCCGAGGAATCAC 60.806 60.000 4.07 0.00 0.00 3.06
99 100 1.254975 TGCCTTCGTCCGAGGAATCA 61.255 55.000 4.07 3.62 0.00 2.57
100 101 0.108329 TTGCCTTCGTCCGAGGAATC 60.108 55.000 4.07 1.34 0.00 2.52
101 102 0.108138 CTTGCCTTCGTCCGAGGAAT 60.108 55.000 4.07 0.00 0.00 3.01
102 103 1.292223 CTTGCCTTCGTCCGAGGAA 59.708 57.895 0.00 3.62 0.00 3.36
103 104 2.970639 CTTGCCTTCGTCCGAGGA 59.029 61.111 0.00 0.00 0.00 3.71
104 105 2.815647 GCTTGCCTTCGTCCGAGG 60.816 66.667 0.00 0.00 0.00 4.63
105 106 1.630244 CTTGCTTGCCTTCGTCCGAG 61.630 60.000 0.00 0.00 0.00 4.63
106 107 1.667830 CTTGCTTGCCTTCGTCCGA 60.668 57.895 0.00 0.00 0.00 4.55
107 108 1.667830 TCTTGCTTGCCTTCGTCCG 60.668 57.895 0.00 0.00 0.00 4.79
108 109 1.869690 GTCTTGCTTGCCTTCGTCC 59.130 57.895 0.00 0.00 0.00 4.79
109 110 1.493311 CGTCTTGCTTGCCTTCGTC 59.507 57.895 0.00 0.00 0.00 4.20
110 111 1.961277 CCGTCTTGCTTGCCTTCGT 60.961 57.895 0.00 0.00 0.00 3.85
111 112 2.680913 CCCGTCTTGCTTGCCTTCG 61.681 63.158 0.00 0.00 0.00 3.79
112 113 1.578206 GACCCGTCTTGCTTGCCTTC 61.578 60.000 0.00 0.00 0.00 3.46
113 114 1.600916 GACCCGTCTTGCTTGCCTT 60.601 57.895 0.00 0.00 0.00 4.35
114 115 2.032681 GACCCGTCTTGCTTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
115 116 2.032681 AGACCCGTCTTGCTTGCC 59.967 61.111 0.00 0.00 36.31 4.52
116 117 1.598130 ACAGACCCGTCTTGCTTGC 60.598 57.895 0.00 0.00 37.98 4.01
117 118 0.532862 ACACAGACCCGTCTTGCTTG 60.533 55.000 0.00 0.00 37.98 4.01
118 119 0.180406 AACACAGACCCGTCTTGCTT 59.820 50.000 0.00 0.00 37.98 3.91
119 120 0.180406 AAACACAGACCCGTCTTGCT 59.820 50.000 0.00 0.00 37.98 3.91
120 121 0.586802 GAAACACAGACCCGTCTTGC 59.413 55.000 0.00 0.00 37.98 4.01
121 122 2.135933 GAGAAACACAGACCCGTCTTG 58.864 52.381 0.00 0.88 37.98 3.02
122 123 2.040178 AGAGAAACACAGACCCGTCTT 58.960 47.619 0.00 0.00 37.98 3.01
123 124 1.705873 AGAGAAACACAGACCCGTCT 58.294 50.000 0.00 0.00 41.37 4.18
124 125 2.667724 CGTAGAGAAACACAGACCCGTC 60.668 54.545 0.00 0.00 0.00 4.79
125 126 1.268899 CGTAGAGAAACACAGACCCGT 59.731 52.381 0.00 0.00 0.00 5.28
126 127 1.402456 CCGTAGAGAAACACAGACCCG 60.402 57.143 0.00 0.00 0.00 5.28
127 128 1.067071 CCCGTAGAGAAACACAGACCC 60.067 57.143 0.00 0.00 0.00 4.46
128 129 1.672145 GCCCGTAGAGAAACACAGACC 60.672 57.143 0.00 0.00 0.00 3.85
129 130 1.272769 AGCCCGTAGAGAAACACAGAC 59.727 52.381 0.00 0.00 0.00 3.51
130 131 1.272490 CAGCCCGTAGAGAAACACAGA 59.728 52.381 0.00 0.00 0.00 3.41
131 132 1.673033 CCAGCCCGTAGAGAAACACAG 60.673 57.143 0.00 0.00 0.00 3.66
132 133 0.320374 CCAGCCCGTAGAGAAACACA 59.680 55.000 0.00 0.00 0.00 3.72
133 134 0.391263 CCCAGCCCGTAGAGAAACAC 60.391 60.000 0.00 0.00 0.00 3.32
134 135 1.980052 CCCAGCCCGTAGAGAAACA 59.020 57.895 0.00 0.00 0.00 2.83
135 136 1.449778 GCCCAGCCCGTAGAGAAAC 60.450 63.158 0.00 0.00 0.00 2.78
136 137 1.612442 AGCCCAGCCCGTAGAGAAA 60.612 57.895 0.00 0.00 0.00 2.52
137 138 2.038975 AGCCCAGCCCGTAGAGAA 59.961 61.111 0.00 0.00 0.00 2.87
138 139 2.759973 CAGCCCAGCCCGTAGAGA 60.760 66.667 0.00 0.00 0.00 3.10
139 140 3.854669 CCAGCCCAGCCCGTAGAG 61.855 72.222 0.00 0.00 0.00 2.43
140 141 4.715130 ACCAGCCCAGCCCGTAGA 62.715 66.667 0.00 0.00 0.00 2.59
141 142 4.162690 GACCAGCCCAGCCCGTAG 62.163 72.222 0.00 0.00 0.00 3.51
152 153 4.162690 AGATTCGCCCGGACCAGC 62.163 66.667 0.73 0.00 0.00 4.85
153 154 2.107141 GAGATTCGCCCGGACCAG 59.893 66.667 0.73 0.00 0.00 4.00
154 155 3.467226 GGAGATTCGCCCGGACCA 61.467 66.667 0.73 0.00 0.00 4.02
155 156 3.155167 AGGAGATTCGCCCGGACC 61.155 66.667 0.73 0.00 0.00 4.46
156 157 2.107141 CAGGAGATTCGCCCGGAC 59.893 66.667 0.73 0.00 0.00 4.79
157 158 3.849951 GCAGGAGATTCGCCCGGA 61.850 66.667 0.73 0.00 0.00 5.14
158 159 4.918201 GGCAGGAGATTCGCCCGG 62.918 72.222 2.46 0.00 40.07 5.73
159 160 2.947938 ATTGGCAGGAGATTCGCCCG 62.948 60.000 2.46 0.00 45.63 6.13
160 161 1.152881 ATTGGCAGGAGATTCGCCC 60.153 57.895 2.46 0.00 45.63 6.13
161 162 0.464373 TGATTGGCAGGAGATTCGCC 60.464 55.000 0.00 0.00 46.43 5.54
162 163 1.382522 TTGATTGGCAGGAGATTCGC 58.617 50.000 0.00 0.00 0.00 4.70
163 164 3.208594 TGATTGATTGGCAGGAGATTCG 58.791 45.455 0.00 0.00 0.00 3.34
164 165 4.558898 GCATGATTGATTGGCAGGAGATTC 60.559 45.833 0.00 0.00 0.00 2.52
165 166 3.321111 GCATGATTGATTGGCAGGAGATT 59.679 43.478 0.00 0.00 0.00 2.40
166 167 2.891580 GCATGATTGATTGGCAGGAGAT 59.108 45.455 0.00 0.00 0.00 2.75
167 168 2.304092 GCATGATTGATTGGCAGGAGA 58.696 47.619 0.00 0.00 0.00 3.71
168 169 2.028876 TGCATGATTGATTGGCAGGAG 58.971 47.619 0.00 0.00 0.00 3.69
169 170 2.146920 TGCATGATTGATTGGCAGGA 57.853 45.000 0.00 0.00 0.00 3.86
170 171 2.754472 CATGCATGATTGATTGGCAGG 58.246 47.619 22.59 0.00 37.96 4.85
171 172 2.135139 GCATGCATGATTGATTGGCAG 58.865 47.619 30.64 0.00 37.96 4.85
172 173 1.202592 GGCATGCATGATTGATTGGCA 60.203 47.619 30.64 0.00 39.03 4.92
173 174 1.508632 GGCATGCATGATTGATTGGC 58.491 50.000 30.64 10.76 0.00 4.52
174 175 1.067974 ACGGCATGCATGATTGATTGG 59.932 47.619 30.64 10.75 0.00 3.16
175 176 2.124122 CACGGCATGCATGATTGATTG 58.876 47.619 30.64 12.78 0.00 2.67
176 177 1.752498 ACACGGCATGCATGATTGATT 59.248 42.857 30.64 6.11 0.00 2.57
177 178 1.335810 GACACGGCATGCATGATTGAT 59.664 47.619 30.64 11.66 0.00 2.57
178 179 0.734309 GACACGGCATGCATGATTGA 59.266 50.000 30.64 0.00 0.00 2.57
179 180 0.452585 TGACACGGCATGCATGATTG 59.547 50.000 30.64 22.47 0.00 2.67
180 181 0.736636 CTGACACGGCATGCATGATT 59.263 50.000 30.64 10.02 0.00 2.57
181 182 0.393402 ACTGACACGGCATGCATGAT 60.393 50.000 30.64 11.66 0.00 2.45
182 183 1.003476 ACTGACACGGCATGCATGA 60.003 52.632 30.64 6.34 0.00 3.07
183 184 1.135939 CACTGACACGGCATGCATG 59.864 57.895 22.70 22.70 0.00 4.06
184 185 2.693762 GCACTGACACGGCATGCAT 61.694 57.895 21.36 3.56 36.30 3.96
185 186 3.356267 GCACTGACACGGCATGCA 61.356 61.111 21.36 0.00 36.30 3.96
186 187 4.450122 CGCACTGACACGGCATGC 62.450 66.667 9.90 9.90 0.00 4.06
187 188 2.116736 AAACGCACTGACACGGCATG 62.117 55.000 0.00 0.00 0.00 4.06
188 189 1.444119 AAAACGCACTGACACGGCAT 61.444 50.000 0.00 0.00 0.00 4.40
189 190 2.109739 AAAACGCACTGACACGGCA 61.110 52.632 0.00 0.00 0.00 5.69
190 191 1.654137 CAAAACGCACTGACACGGC 60.654 57.895 0.00 0.00 0.00 5.68
191 192 1.654137 GCAAAACGCACTGACACGG 60.654 57.895 0.00 0.00 41.79 4.94
192 193 0.248054 AAGCAAAACGCACTGACACG 60.248 50.000 0.00 0.00 46.13 4.49
193 194 1.583404 CAAAGCAAAACGCACTGACAC 59.417 47.619 0.00 0.00 46.13 3.67
194 195 1.201181 ACAAAGCAAAACGCACTGACA 59.799 42.857 0.00 0.00 46.13 3.58
195 196 1.846175 GACAAAGCAAAACGCACTGAC 59.154 47.619 0.00 0.00 46.13 3.51
196 197 1.742831 AGACAAAGCAAAACGCACTGA 59.257 42.857 0.00 0.00 46.13 3.41
197 198 2.111756 GAGACAAAGCAAAACGCACTG 58.888 47.619 0.00 0.00 46.13 3.66
198 199 1.742831 TGAGACAAAGCAAAACGCACT 59.257 42.857 0.00 0.00 46.13 4.40
199 200 2.111756 CTGAGACAAAGCAAAACGCAC 58.888 47.619 0.00 0.00 46.13 5.34
200 201 1.742831 ACTGAGACAAAGCAAAACGCA 59.257 42.857 0.00 0.00 46.13 5.24
201 202 2.475200 ACTGAGACAAAGCAAAACGC 57.525 45.000 0.00 0.00 42.91 4.84
202 203 2.531508 GCAACTGAGACAAAGCAAAACG 59.468 45.455 0.00 0.00 0.00 3.60
213 214 1.262683 GCTGACACAAGCAACTGAGAC 59.737 52.381 0.00 0.00 43.01 3.36
273 274 1.594331 AGTTTCAAACGCTCCAGTCC 58.406 50.000 0.00 0.00 36.23 3.85
323 327 5.186996 ACAAGTCACCTGCAAATAAACAG 57.813 39.130 0.00 0.00 0.00 3.16
324 328 5.105554 ACAACAAGTCACCTGCAAATAAACA 60.106 36.000 0.00 0.00 0.00 2.83
325 329 5.231991 CACAACAAGTCACCTGCAAATAAAC 59.768 40.000 0.00 0.00 0.00 2.01
326 330 5.347342 CACAACAAGTCACCTGCAAATAAA 58.653 37.500 0.00 0.00 0.00 1.40
327 331 4.202101 CCACAACAAGTCACCTGCAAATAA 60.202 41.667 0.00 0.00 0.00 1.40
328 332 3.317711 CCACAACAAGTCACCTGCAAATA 59.682 43.478 0.00 0.00 0.00 1.40
329 333 2.101249 CCACAACAAGTCACCTGCAAAT 59.899 45.455 0.00 0.00 0.00 2.32
330 334 1.476085 CCACAACAAGTCACCTGCAAA 59.524 47.619 0.00 0.00 0.00 3.68
331 335 1.102154 CCACAACAAGTCACCTGCAA 58.898 50.000 0.00 0.00 0.00 4.08
332 336 0.751277 CCCACAACAAGTCACCTGCA 60.751 55.000 0.00 0.00 0.00 4.41
333 337 2.032981 CCCACAACAAGTCACCTGC 58.967 57.895 0.00 0.00 0.00 4.85
334 338 1.785041 CGCCCACAACAAGTCACCTG 61.785 60.000 0.00 0.00 0.00 4.00
335 339 1.525995 CGCCCACAACAAGTCACCT 60.526 57.895 0.00 0.00 0.00 4.00
336 340 2.551912 CCGCCCACAACAAGTCACC 61.552 63.158 0.00 0.00 0.00 4.02
337 341 1.381165 AACCGCCCACAACAAGTCAC 61.381 55.000 0.00 0.00 0.00 3.67
404 408 2.809601 CGGCGTTCCTTCTCACCG 60.810 66.667 0.00 0.00 0.00 4.94
405 409 2.434359 CCGGCGTTCCTTCTCACC 60.434 66.667 6.01 0.00 0.00 4.02
421 425 3.202706 GATTCTGCCGGCCGTTCC 61.203 66.667 26.77 12.58 0.00 3.62
422 426 3.202706 GGATTCTGCCGGCCGTTC 61.203 66.667 26.77 18.01 0.00 3.95
440 444 0.539518 GCTTCCCTTCCCTCTGACTC 59.460 60.000 0.00 0.00 0.00 3.36
467 471 0.108329 CCTATCCTTTGTCGTGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
468 472 0.108329 ACCTATCCTTTGTCGTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
478 489 1.068741 GCCGTCGATCAACCTATCCTT 59.931 52.381 0.00 0.00 0.00 3.36
483 494 1.141019 GCAGCCGTCGATCAACCTA 59.859 57.895 0.00 0.00 0.00 3.08
484 495 2.125512 GCAGCCGTCGATCAACCT 60.126 61.111 0.00 0.00 0.00 3.50
486 497 1.014044 TGAAGCAGCCGTCGATCAAC 61.014 55.000 0.00 0.00 0.00 3.18
492 503 0.737367 TTGAGATGAAGCAGCCGTCG 60.737 55.000 0.00 0.00 0.00 5.12
509 520 2.872337 GAAGGGATTTGCGCGGCTTG 62.872 60.000 8.83 0.00 34.07 4.01
510 521 2.676471 AAGGGATTTGCGCGGCTT 60.676 55.556 8.83 0.00 34.07 4.35
512 523 1.776034 CTAGAAGGGATTTGCGCGGC 61.776 60.000 8.83 0.00 34.07 6.53
538 549 5.013547 ACTCCTATAACTCCCATCATCTCG 58.986 45.833 0.00 0.00 0.00 4.04
582 631 9.739276 TTCATCATCAGTACTAAGGAAACAAAT 57.261 29.630 0.00 0.00 0.00 2.32
597 646 4.142447 GCTTGACAGCATTTCATCATCAGT 60.142 41.667 0.00 0.00 46.49 3.41
652 701 2.627945 GACTGGTTGCATTGATCGGTA 58.372 47.619 0.00 0.00 0.00 4.02
656 705 3.018856 TCATGGACTGGTTGCATTGATC 58.981 45.455 0.00 0.00 33.06 2.92
677 726 3.255642 GCTCCCATGTTTTACACACATGT 59.744 43.478 11.15 0.00 46.95 3.21
696 745 4.267349 TGTAGTACTTGGGAAAGTGCTC 57.733 45.455 11.67 6.05 43.17 4.26
699 748 8.512138 CCTTTTATTGTAGTACTTGGGAAAGTG 58.488 37.037 0.00 0.00 34.37 3.16
700 749 8.222637 ACCTTTTATTGTAGTACTTGGGAAAGT 58.777 33.333 0.00 0.00 36.82 2.66
701 750 8.512138 CACCTTTTATTGTAGTACTTGGGAAAG 58.488 37.037 0.00 5.16 0.00 2.62
702 751 8.219178 TCACCTTTTATTGTAGTACTTGGGAAA 58.781 33.333 0.00 0.00 0.00 3.13
704 753 7.163441 GTCACCTTTTATTGTAGTACTTGGGA 58.837 38.462 0.00 0.00 0.00 4.37
705 754 6.373495 GGTCACCTTTTATTGTAGTACTTGGG 59.627 42.308 0.00 0.00 0.00 4.12
706 755 7.119262 CAGGTCACCTTTTATTGTAGTACTTGG 59.881 40.741 0.00 0.00 0.00 3.61
707 756 7.119262 CCAGGTCACCTTTTATTGTAGTACTTG 59.881 40.741 0.00 0.00 0.00 3.16
708 757 7.166167 CCAGGTCACCTTTTATTGTAGTACTT 58.834 38.462 0.00 0.00 0.00 2.24
709 758 6.271624 ACCAGGTCACCTTTTATTGTAGTACT 59.728 38.462 0.00 0.00 0.00 2.73
710 759 6.470278 ACCAGGTCACCTTTTATTGTAGTAC 58.530 40.000 0.00 0.00 0.00 2.73
711 760 6.296030 GGACCAGGTCACCTTTTATTGTAGTA 60.296 42.308 21.75 0.00 33.68 1.82
712 761 5.514310 GGACCAGGTCACCTTTTATTGTAGT 60.514 44.000 21.75 0.00 33.68 2.73
714 763 4.600111 AGGACCAGGTCACCTTTTATTGTA 59.400 41.667 21.75 0.00 33.68 2.41
715 764 3.397955 AGGACCAGGTCACCTTTTATTGT 59.602 43.478 21.75 0.00 33.68 2.71
716 765 4.034285 AGGACCAGGTCACCTTTTATTG 57.966 45.455 21.75 0.00 33.68 1.90
717 766 4.354087 AGAAGGACCAGGTCACCTTTTATT 59.646 41.667 21.75 2.62 42.98 1.40
718 767 3.916989 AGAAGGACCAGGTCACCTTTTAT 59.083 43.478 21.75 5.04 42.98 1.40
719 768 3.072476 CAGAAGGACCAGGTCACCTTTTA 59.928 47.826 21.75 0.00 42.98 1.52
775 872 9.077885 ACATGTACAGTACAATTTTCTCCAAAT 57.922 29.630 17.43 0.00 42.76 2.32
788 885 5.889289 TGACTGCCTATACATGTACAGTACA 59.111 40.000 20.67 15.90 43.80 2.90
789 886 6.039493 ACTGACTGCCTATACATGTACAGTAC 59.961 42.308 20.67 15.80 38.42 2.73
790 887 6.127101 ACTGACTGCCTATACATGTACAGTA 58.873 40.000 20.67 11.84 38.42 2.74
791 888 4.956700 ACTGACTGCCTATACATGTACAGT 59.043 41.667 20.73 20.73 40.85 3.55
792 889 5.521906 ACTGACTGCCTATACATGTACAG 57.478 43.478 7.96 12.97 0.00 2.74
849 946 1.450312 GCCCATTCGACCAGGTCAG 60.450 63.158 20.13 12.10 32.09 3.51
854 951 2.124570 CAGGGCCCATTCGACCAG 60.125 66.667 27.56 0.00 0.00 4.00
885 1035 2.165030 GAGTTTCCTGGATGTTGCCATG 59.835 50.000 0.00 0.00 37.30 3.66
886 1036 2.450476 GAGTTTCCTGGATGTTGCCAT 58.550 47.619 0.00 0.00 37.30 4.40
887 1037 1.881925 CGAGTTTCCTGGATGTTGCCA 60.882 52.381 0.00 0.00 36.30 4.92
890 1040 0.804989 GCCGAGTTTCCTGGATGTTG 59.195 55.000 0.00 0.00 0.00 3.33
891 1041 0.322546 GGCCGAGTTTCCTGGATGTT 60.323 55.000 0.00 0.00 0.00 2.71
892 1042 1.299976 GGCCGAGTTTCCTGGATGT 59.700 57.895 0.00 0.00 0.00 3.06
893 1043 1.452108 GGGCCGAGTTTCCTGGATG 60.452 63.158 0.00 0.00 0.00 3.51
894 1044 2.998949 GGGCCGAGTTTCCTGGAT 59.001 61.111 0.00 0.00 0.00 3.41
895 1045 3.702048 CGGGCCGAGTTTCCTGGA 61.702 66.667 24.41 0.00 0.00 3.86
896 1046 4.778143 CCGGGCCGAGTTTCCTGG 62.778 72.222 30.79 2.47 42.07 4.45
968 1120 2.574399 GTCGTGGAGAGCTGGGAC 59.426 66.667 0.00 0.00 0.00 4.46
996 1148 1.497991 CGACGGCGACATCCATATTT 58.502 50.000 16.62 0.00 40.82 1.40
1191 1355 0.537371 CGCAAGGAACAGAAAGGGGT 60.537 55.000 0.00 0.00 0.00 4.95
1226 1390 3.537297 GCACGAGCGAGCGAGTTC 61.537 66.667 4.36 0.00 34.83 3.01
1300 1464 3.698040 CAGGAATGAATTTCAGAGGTGGG 59.302 47.826 5.21 0.00 35.94 4.61
1304 1468 5.251764 ACTGACAGGAATGAATTTCAGAGG 58.748 41.667 7.51 0.00 35.94 3.69
1421 1586 4.023707 GGCGCTTTATATGAGACAAGCAAT 60.024 41.667 7.64 0.00 41.51 3.56
1422 1587 3.312421 GGCGCTTTATATGAGACAAGCAA 59.688 43.478 7.64 0.00 41.51 3.91
1435 1600 1.202639 TGATGTCCATCGGCGCTTTAT 60.203 47.619 7.64 0.00 40.63 1.40
1436 1601 0.176910 TGATGTCCATCGGCGCTTTA 59.823 50.000 7.64 0.00 40.63 1.85
1437 1602 1.078497 TGATGTCCATCGGCGCTTT 60.078 52.632 7.64 0.00 40.63 3.51
1564 1752 7.881142 ACTTTCAGCACATAGTAGCTAGATAG 58.119 38.462 0.00 0.00 39.50 2.08
1620 1808 2.770802 ACATCTGGAGATCAAGAGGGTG 59.229 50.000 4.09 0.00 31.21 4.61
1621 1809 3.037549 GACATCTGGAGATCAAGAGGGT 58.962 50.000 4.09 0.00 31.21 4.34
1622 1810 2.035704 CGACATCTGGAGATCAAGAGGG 59.964 54.545 4.09 0.00 31.21 4.30
1629 1856 4.647424 AAGAACTCGACATCTGGAGATC 57.353 45.455 0.00 0.00 33.67 2.75
1657 1884 0.670546 AGCTTAGTTGCACGCATCGT 60.671 50.000 0.00 0.00 42.36 3.73
1690 1917 2.553028 CCCCTAGCAGCAACAAAGAAGA 60.553 50.000 0.00 0.00 0.00 2.87
1716 1943 2.489938 TTGTGACCCCTGTATCTTGC 57.510 50.000 0.00 0.00 0.00 4.01
1840 2067 5.997746 TGATGTCAGAAAGTGGTTCTTTAGG 59.002 40.000 0.00 0.00 44.64 2.69
1888 2115 5.657474 CGAGGTTGAGTACTTAATTAGCCA 58.343 41.667 3.12 0.00 0.00 4.75
1933 2160 2.204237 GTCTGGCCAAAAACTTTGCAG 58.796 47.619 7.01 0.00 0.00 4.41
1944 2171 4.577677 TGCTTGCGGTCTGGCCAA 62.578 61.111 7.01 0.00 36.97 4.52
2101 2328 4.641989 GGAGCCATCATTACAATCACACTT 59.358 41.667 0.00 0.00 0.00 3.16
2167 2394 1.601419 CCAAACTGCCCAGCCATCAG 61.601 60.000 0.00 0.00 0.00 2.90
2173 2400 3.688159 CAGCCCAAACTGCCCAGC 61.688 66.667 0.00 0.00 0.00 4.85
2204 2431 5.835280 ACTTCAAAGGATTCAGTTTCCACAT 59.165 36.000 0.00 0.00 35.59 3.21
2212 2439 6.784031 ACTTCCATACTTCAAAGGATTCAGT 58.216 36.000 0.00 0.00 0.00 3.41
2219 2446 8.306761 AGCAATTAAACTTCCATACTTCAAAGG 58.693 33.333 0.00 0.00 0.00 3.11
2316 2543 9.851686 AGACCATACATACATACATCAAACATT 57.148 29.630 0.00 0.00 0.00 2.71
2356 2593 4.022589 ACCAGCTTGATTCACTCACATTTG 60.023 41.667 0.00 0.00 32.17 2.32
2360 2597 2.936919 ACCAGCTTGATTCACTCACA 57.063 45.000 0.00 0.00 32.17 3.58
2361 2598 3.929610 GTCTACCAGCTTGATTCACTCAC 59.070 47.826 0.00 0.00 32.17 3.51
2362 2599 3.578282 TGTCTACCAGCTTGATTCACTCA 59.422 43.478 0.00 0.00 0.00 3.41
2363 2600 4.193826 TGTCTACCAGCTTGATTCACTC 57.806 45.455 0.00 0.00 0.00 3.51
2511 2750 2.465860 TACACCACACATTTCCCTCG 57.534 50.000 0.00 0.00 0.00 4.63
2612 2871 4.099573 AGTCCCATAGCAGTATGTACACAC 59.900 45.833 0.00 0.00 39.31 3.82
2614 2873 4.939052 AGTCCCATAGCAGTATGTACAC 57.061 45.455 0.00 0.00 39.31 2.90
3066 3352 0.447801 CTCCGTTCCAATTTGAGGCG 59.552 55.000 0.00 0.00 0.00 5.52
3132 3418 3.485633 CTCATTGCACAATCTGTTGTCG 58.514 45.455 0.00 0.00 45.14 4.35
3266 3560 5.009610 TCCCAAACTACAACAAATCTGAAGC 59.990 40.000 0.00 0.00 0.00 3.86
3280 3574 5.705905 AGAAATGCTTGTACTCCCAAACTAC 59.294 40.000 0.00 0.00 0.00 2.73
3306 3629 3.665190 AGCTAGTTGTGTGTTTCTAGGC 58.335 45.455 0.00 0.00 32.94 3.93
3516 3839 6.419980 TGCAATTTTAAACAGCCAATATGC 57.580 33.333 0.00 0.00 0.00 3.14
3589 3912 7.062749 TGTGTGTCTAAGTCAAGGAAATACT 57.937 36.000 0.00 0.00 0.00 2.12
3669 3992 9.890629 TGTATCTGATTAATAATATGGTCTGGC 57.109 33.333 0.00 0.00 0.00 4.85
3693 4016 9.851686 TTCTATGCTCATTTAACCTCATAATGT 57.148 29.630 0.00 0.00 32.49 2.71
3805 4129 2.290367 TCTGTTTGTTTGATCTGCCGTG 59.710 45.455 0.00 0.00 0.00 4.94
3809 4133 5.807011 AGTTGTTTCTGTTTGTTTGATCTGC 59.193 36.000 0.00 0.00 0.00 4.26
3870 4194 5.963176 AACATTACAACTCACATGATGCA 57.037 34.783 0.00 0.00 0.00 3.96
3895 4224 6.701340 ACGCTGCATCCTGAGAATATATAAA 58.299 36.000 0.00 0.00 0.00 1.40
3915 4244 0.890542 TGGCAATTGCAAGAGACGCT 60.891 50.000 30.32 0.00 44.36 5.07
3921 4250 7.160049 TCTTTTTCATTATGGCAATTGCAAGA 58.840 30.769 30.32 21.49 44.36 3.02
3949 4278 3.432608 CCCAAAAATATACGACCCCGAGT 60.433 47.826 0.00 0.00 39.50 4.18
4044 4378 1.432514 CCATGACACACCGACAGAAG 58.567 55.000 0.00 0.00 0.00 2.85
4120 4464 5.708230 TGTTAACAGCGTCCATTATTTCCTT 59.292 36.000 3.59 0.00 0.00 3.36
4122 4466 5.554822 TGTTAACAGCGTCCATTATTTCC 57.445 39.130 3.59 0.00 0.00 3.13
4204 4548 1.278637 CCGAAACACTTCACACGCC 59.721 57.895 0.00 0.00 0.00 5.68
4253 4624 9.183368 GAAGAGAAGGTGGATTCAAGATTATTT 57.817 33.333 0.00 0.00 0.00 1.40
4289 4660 1.151908 CCTTTTCCCCAACGGACCA 59.848 57.895 0.00 0.00 41.83 4.02
4393 4764 1.498865 CTCAACATATGCGACCGGGC 61.499 60.000 6.32 0.00 0.00 6.13
4420 4791 5.186198 CCTATTCACTCAGGGTAACAAAGG 58.814 45.833 0.00 0.00 39.74 3.11
4443 4814 0.734889 CGACAACAGATCCCATTGGC 59.265 55.000 0.00 2.48 0.00 4.52
4444 4815 2.113860 ACGACAACAGATCCCATTGG 57.886 50.000 0.00 0.00 0.00 3.16
4445 4816 3.861840 AGTACGACAACAGATCCCATTG 58.138 45.455 0.00 0.00 0.00 2.82
4446 4817 3.428999 CGAGTACGACAACAGATCCCATT 60.429 47.826 0.00 0.00 42.66 3.16
4454 4838 2.225019 AGTGGTACGAGTACGACAACAG 59.775 50.000 23.50 0.00 44.04 3.16
4466 4850 1.671845 GCAACAAAACCAGTGGTACGA 59.328 47.619 17.09 0.00 33.12 3.43
4467 4851 1.673920 AGCAACAAAACCAGTGGTACG 59.326 47.619 17.09 9.58 33.12 3.67
4468 4852 2.034179 GGAGCAACAAAACCAGTGGTAC 59.966 50.000 17.09 0.00 33.12 3.34
4471 4855 1.067516 CTGGAGCAACAAAACCAGTGG 59.932 52.381 7.91 7.91 43.16 4.00
4472 4856 2.497107 CTGGAGCAACAAAACCAGTG 57.503 50.000 0.00 0.00 43.16 3.66
4487 4871 2.928801 TCTAAAACTGCTGTGCTGGA 57.071 45.000 0.00 0.00 0.00 3.86
4590 4979 3.059461 GGACAAACGAATGCGACAAAGTA 60.059 43.478 0.00 0.00 41.64 2.24
4601 4990 1.528161 GAAACGGACGGACAAACGAAT 59.472 47.619 0.00 0.00 37.61 3.34
4607 4996 0.249996 GGAAGGAAACGGACGGACAA 60.250 55.000 0.00 0.00 0.00 3.18
4609 4998 1.735559 CGGAAGGAAACGGACGGAC 60.736 63.158 0.00 0.00 0.00 4.79
4668 5079 8.035984 ACCAAAATCGGTAAAAACTTTCAGAAA 58.964 29.630 0.00 0.00 37.57 2.52
4706 5125 3.450457 TCAAAACAAAGTTCAGGCCATGT 59.550 39.130 5.01 0.00 0.00 3.21
4774 5193 8.079809 ACCAGTTAAAAAGAACAATTGGTATCG 58.920 33.333 10.83 0.00 35.02 2.92
4782 5201 6.322712 TGGTGCTACCAGTTAAAAAGAACAAT 59.677 34.615 4.16 0.00 44.79 2.71
4801 5222 0.394565 GTCAGTCCAAGAGTGGTGCT 59.605 55.000 0.00 0.00 46.11 4.40
4804 5225 2.398588 TCAAGTCAGTCCAAGAGTGGT 58.601 47.619 0.00 0.00 46.11 4.16
4809 5232 5.253330 ACAAAACTTCAAGTCAGTCCAAGA 58.747 37.500 0.00 0.00 0.00 3.02
4810 5233 5.449177 GGACAAAACTTCAAGTCAGTCCAAG 60.449 44.000 22.03 0.29 40.24 3.61
4811 5234 4.398044 GGACAAAACTTCAAGTCAGTCCAA 59.602 41.667 22.03 0.00 40.24 3.53
4812 5235 3.945285 GGACAAAACTTCAAGTCAGTCCA 59.055 43.478 22.03 0.00 40.24 4.02
4813 5236 3.002348 CGGACAAAACTTCAAGTCAGTCC 59.998 47.826 19.07 19.07 38.67 3.85
4814 5237 3.869246 TCGGACAAAACTTCAAGTCAGTC 59.131 43.478 7.94 7.94 32.79 3.51
4815 5238 3.869065 TCGGACAAAACTTCAAGTCAGT 58.131 40.909 0.00 0.00 32.79 3.41
4820 5243 4.102649 GTGGTTTCGGACAAAACTTCAAG 58.897 43.478 0.00 0.00 38.81 3.02
4821 5244 3.426426 CGTGGTTTCGGACAAAACTTCAA 60.426 43.478 0.00 0.00 38.81 2.69
5013 5439 6.095021 GGGAAAAACAGAGTTTCACTACACTT 59.905 38.462 0.00 0.00 35.83 3.16
5046 5472 8.122472 AGAAGGAAAAACAGTCTTCTCAAAAA 57.878 30.769 0.00 0.00 41.16 1.94
5047 5473 7.703058 AGAAGGAAAAACAGTCTTCTCAAAA 57.297 32.000 0.00 0.00 41.16 2.44
5048 5474 7.827236 TGTAGAAGGAAAAACAGTCTTCTCAAA 59.173 33.333 7.58 0.00 43.14 2.69
5049 5475 7.335627 TGTAGAAGGAAAAACAGTCTTCTCAA 58.664 34.615 7.58 0.00 43.14 3.02
5050 5476 6.884832 TGTAGAAGGAAAAACAGTCTTCTCA 58.115 36.000 7.58 4.58 43.14 3.27
5051 5477 7.875554 AGATGTAGAAGGAAAAACAGTCTTCTC 59.124 37.037 7.58 2.51 43.14 2.87
5052 5478 7.740805 AGATGTAGAAGGAAAAACAGTCTTCT 58.259 34.615 9.04 9.04 45.24 2.85
5053 5479 7.971183 AGATGTAGAAGGAAAAACAGTCTTC 57.029 36.000 0.00 0.00 36.73 2.87
5054 5480 7.775561 ACAAGATGTAGAAGGAAAAACAGTCTT 59.224 33.333 0.00 0.00 0.00 3.01
5055 5481 7.283329 ACAAGATGTAGAAGGAAAAACAGTCT 58.717 34.615 0.00 0.00 0.00 3.24
5056 5482 7.497925 ACAAGATGTAGAAGGAAAAACAGTC 57.502 36.000 0.00 0.00 0.00 3.51
5057 5483 7.444487 GGTACAAGATGTAGAAGGAAAAACAGT 59.556 37.037 0.00 0.00 32.84 3.55
5058 5484 7.661847 AGGTACAAGATGTAGAAGGAAAAACAG 59.338 37.037 0.00 0.00 32.84 3.16
5059 5485 7.444183 CAGGTACAAGATGTAGAAGGAAAAACA 59.556 37.037 0.00 0.00 32.84 2.83
5060 5486 7.660208 TCAGGTACAAGATGTAGAAGGAAAAAC 59.340 37.037 0.00 0.00 32.84 2.43
5078 5504 2.738480 GCCCACACGTCAGGTACA 59.262 61.111 0.00 0.00 0.00 2.90
5088 8433 4.660938 GGACACCAGGGCCCACAC 62.661 72.222 27.56 8.68 0.00 3.82
5098 8443 1.227102 GGCAGGCATATGGACACCA 59.773 57.895 4.56 0.00 38.19 4.17
5151 8496 1.259840 GGTCCAACACGGCTACCCTA 61.260 60.000 0.00 0.00 33.14 3.53
5154 8499 2.046604 GGGTCCAACACGGCTACC 60.047 66.667 0.00 0.00 31.89 3.18
5155 8500 2.433664 CGGGTCCAACACGGCTAC 60.434 66.667 0.00 0.00 42.19 3.58
5180 8528 3.511540 ACTTACTAGCAGCACTGACATCA 59.488 43.478 0.81 0.00 0.00 3.07
5196 8544 4.104261 AGGGGAGCACTTTGTTTACTTACT 59.896 41.667 0.00 0.00 0.00 2.24
5197 8545 4.395625 AGGGGAGCACTTTGTTTACTTAC 58.604 43.478 0.00 0.00 0.00 2.34
5200 8548 2.711547 AGAGGGGAGCACTTTGTTTACT 59.288 45.455 0.00 0.00 0.00 2.24
5201 8549 3.141767 AGAGGGGAGCACTTTGTTTAC 57.858 47.619 0.00 0.00 0.00 2.01
5202 8550 3.137544 TGAAGAGGGGAGCACTTTGTTTA 59.862 43.478 0.00 0.00 0.00 2.01
5203 8551 2.091885 TGAAGAGGGGAGCACTTTGTTT 60.092 45.455 0.00 0.00 0.00 2.83
5204 8552 1.494721 TGAAGAGGGGAGCACTTTGTT 59.505 47.619 0.00 0.00 0.00 2.83
5205 8553 1.140312 TGAAGAGGGGAGCACTTTGT 58.860 50.000 0.00 0.00 0.00 2.83
5206 8554 2.503895 ATGAAGAGGGGAGCACTTTG 57.496 50.000 0.00 0.00 0.00 2.77
5207 8555 3.075134 AGAAATGAAGAGGGGAGCACTTT 59.925 43.478 0.00 0.00 0.00 2.66
5208 8556 2.646798 AGAAATGAAGAGGGGAGCACTT 59.353 45.455 0.00 0.00 0.00 3.16
5209 8557 2.238395 GAGAAATGAAGAGGGGAGCACT 59.762 50.000 0.00 0.00 0.00 4.40
5210 8558 2.026822 TGAGAAATGAAGAGGGGAGCAC 60.027 50.000 0.00 0.00 0.00 4.40
5211 8559 2.269023 TGAGAAATGAAGAGGGGAGCA 58.731 47.619 0.00 0.00 0.00 4.26
5212 8560 3.356529 TTGAGAAATGAAGAGGGGAGC 57.643 47.619 0.00 0.00 0.00 4.70
5238 8586 0.389948 GACCATCGACCGAGCACTTT 60.390 55.000 0.00 0.00 0.00 2.66
5249 8941 1.294138 GTCAAACCCCGACCATCGA 59.706 57.895 0.00 0.00 43.74 3.59
5259 8951 2.735857 CGGTCGACGGTCAAACCC 60.736 66.667 18.74 7.80 39.42 4.11
5284 8976 8.858003 TTTTCTACTATCATTAGCAACGAGAG 57.142 34.615 0.00 0.00 0.00 3.20
5285 8977 8.467598 ACTTTTCTACTATCATTAGCAACGAGA 58.532 33.333 0.00 0.00 0.00 4.04
5286 8978 8.635877 ACTTTTCTACTATCATTAGCAACGAG 57.364 34.615 0.00 0.00 0.00 4.18
5330 9094 2.551071 GGCCAAACTTCAGAGCAGTAGT 60.551 50.000 0.00 0.00 0.00 2.73
5333 9097 0.183492 TGGCCAAACTTCAGAGCAGT 59.817 50.000 0.61 0.00 0.00 4.40
5336 9100 0.449388 CGATGGCCAAACTTCAGAGC 59.551 55.000 10.96 0.00 0.00 4.09
5337 9101 0.449388 GCGATGGCCAAACTTCAGAG 59.551 55.000 10.96 0.00 0.00 3.35
5338 9102 2.555123 GCGATGGCCAAACTTCAGA 58.445 52.632 10.96 0.00 0.00 3.27
5367 9131 1.800805 CTTCTCGGACATGCACACTT 58.199 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.