Multiple sequence alignment - TraesCS2D01G032600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G032600 chr2D 100.000 6008 0 0 1 6008 12776426 12770419 0.000000e+00 11095.0
1 TraesCS2D01G032600 chr2D 79.517 2441 470 21 2668 5083 2342177 2344612 0.000000e+00 1711.0
2 TraesCS2D01G032600 chr2D 78.169 2414 489 31 2570 4966 5395816 5398208 0.000000e+00 1504.0
3 TraesCS2D01G032600 chr2D 89.857 631 58 6 1706 2333 12774289 12773662 0.000000e+00 806.0
4 TraesCS2D01G032600 chr2D 89.857 631 58 6 2138 2765 12774721 12774094 0.000000e+00 806.0
5 TraesCS2D01G032600 chr2A 95.975 4497 158 14 770 5257 14922492 14918010 0.000000e+00 7280.0
6 TraesCS2D01G032600 chr2A 79.780 2369 433 40 2712 5056 3976140 3978486 0.000000e+00 1679.0
7 TraesCS2D01G032600 chr2A 79.088 2434 474 23 2668 5079 2334786 2337206 0.000000e+00 1642.0
8 TraesCS2D01G032600 chr2A 87.656 721 83 6 2048 2765 14921655 14920938 0.000000e+00 833.0
9 TraesCS2D01G032600 chr2A 88.660 679 75 2 1706 2383 14921133 14920456 0.000000e+00 826.0
10 TraesCS2D01G032600 chr2A 77.612 1139 235 13 1156 2289 4042769 4043892 0.000000e+00 673.0
11 TraesCS2D01G032600 chr2A 92.000 400 31 1 5254 5652 14907512 14907113 1.460000e-155 560.0
12 TraesCS2D01G032600 chr2A 93.824 340 16 3 5650 5988 14906775 14906440 1.930000e-139 507.0
13 TraesCS2D01G032600 chr2A 95.113 266 10 1 519 784 14922774 14922512 3.350000e-112 416.0
14 TraesCS2D01G032600 chr2A 73.540 873 215 16 1899 2763 14921660 14920796 9.720000e-83 318.0
15 TraesCS2D01G032600 chr2A 76.037 217 43 6 5721 5933 35961596 35961807 2.960000e-18 104.0
16 TraesCS2D01G032600 chr2A 80.000 125 15 5 330 454 750823178 750823292 3.860000e-12 84.2
17 TraesCS2D01G032600 chr2A 100.000 28 0 0 1 28 14923286 14923259 1.100000e-02 52.8
18 TraesCS2D01G032600 chrUn 95.938 3176 119 5 771 3936 18049110 18052285 0.000000e+00 5142.0
19 TraesCS2D01G032600 chrUn 95.457 2025 89 3 3987 6008 18052578 18054602 0.000000e+00 3227.0
20 TraesCS2D01G032600 chrUn 86.874 739 89 7 1650 2383 18050429 18051164 0.000000e+00 821.0
21 TraesCS2D01G032600 chrUn 86.288 722 91 8 2048 2765 18049965 18050682 0.000000e+00 778.0
22 TraesCS2D01G032600 chrUn 91.239 331 24 3 457 786 18048766 18049092 4.270000e-121 446.0
23 TraesCS2D01G032600 chrUn 80.769 260 25 12 206 464 18026132 18026367 4.780000e-41 180.0
24 TraesCS2D01G032600 chrUn 73.288 292 64 10 5721 6008 38451475 38451194 1.780000e-15 95.3
25 TraesCS2D01G032600 chr4D 77.159 4111 862 62 1082 5142 3712596 3716679 0.000000e+00 2318.0
26 TraesCS2D01G032600 chr4D 78.843 2524 492 28 2465 4972 3421116 3418619 0.000000e+00 1664.0
27 TraesCS2D01G032600 chr4D 89.583 48 5 0 330 377 110238318 110238365 1.810000e-05 62.1
28 TraesCS2D01G032600 chr4B 77.034 4106 860 61 1080 5148 4954987 4950928 0.000000e+00 2281.0
29 TraesCS2D01G032600 chr4B 79.501 2805 524 40 2180 4971 6039743 6042509 0.000000e+00 1947.0
30 TraesCS2D01G032600 chr4B 76.236 627 139 9 1762 2383 6039757 6040378 2.090000e-84 324.0
31 TraesCS2D01G032600 chr4B 75.847 443 99 8 2327 2765 6056417 6056855 1.010000e-52 219.0
32 TraesCS2D01G032600 chr4A 77.409 3922 814 56 1080 4972 601309902 601313780 0.000000e+00 2268.0
33 TraesCS2D01G032600 chr4A 76.037 217 43 6 5721 5933 75887534 75887745 2.960000e-18 104.0
34 TraesCS2D01G032600 chr3B 79.129 2458 479 24 2660 5090 52892575 52890125 0.000000e+00 1666.0
35 TraesCS2D01G032600 chr3B 75.336 223 38 14 5721 5933 358609182 358608967 2.310000e-14 91.6
36 TraesCS2D01G032600 chr2B 77.482 2740 555 51 2350 5064 6139258 6136556 0.000000e+00 1585.0
37 TraesCS2D01G032600 chr2B 79.819 2215 409 31 2858 5052 6158438 6156242 0.000000e+00 1580.0
38 TraesCS2D01G032600 chr2B 76.245 783 168 11 1327 2104 6034518 6033749 3.370000e-107 399.0
39 TraesCS2D01G032600 chr2B 76.078 719 157 13 1342 2054 6039881 6039172 1.590000e-95 361.0
40 TraesCS2D01G032600 chr2B 76.037 217 43 6 5721 5933 793511785 793511996 2.960000e-18 104.0
41 TraesCS2D01G032600 chr2B 89.091 55 5 1 330 384 95948571 95948624 3.890000e-07 67.6
42 TraesCS2D01G032600 chr2B 89.091 55 5 1 330 384 95981518 95981571 3.890000e-07 67.6
43 TraesCS2D01G032600 chr2B 89.091 55 5 1 330 384 95989703 95989756 3.890000e-07 67.6
44 TraesCS2D01G032600 chr2B 89.091 55 5 1 330 384 96023301 96023354 3.890000e-07 67.6
45 TraesCS2D01G032600 chr6B 84.024 169 26 1 5291 5458 481853368 481853536 1.730000e-35 161.0
46 TraesCS2D01G032600 chr7B 80.749 187 26 5 330 515 693171057 693171234 2.920000e-28 137.0
47 TraesCS2D01G032600 chr7B 95.455 44 2 0 5292 5335 712765356 712765313 3.000000e-08 71.3
48 TraesCS2D01G032600 chr7D 79.891 184 28 4 331 513 530133451 530133276 6.320000e-25 126.0
49 TraesCS2D01G032600 chr7A 78.610 187 31 4 331 516 610456808 610456630 1.370000e-21 115.0
50 TraesCS2D01G032600 chr6A 75.576 217 43 7 5721 5933 583283142 583283352 1.380000e-16 99.0
51 TraesCS2D01G032600 chr5D 90.909 55 4 1 330 384 449990151 449990204 8.350000e-09 73.1
52 TraesCS2D01G032600 chr3D 89.091 55 5 1 330 384 550249840 550249787 3.890000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G032600 chr2D 12770419 12776426 6007 True 4235.666667 11095 93.238000 1 6008 3 chr2D.!!$R1 6007
1 TraesCS2D01G032600 chr2D 2342177 2344612 2435 False 1711.000000 1711 79.517000 2668 5083 1 chr2D.!!$F1 2415
2 TraesCS2D01G032600 chr2D 5395816 5398208 2392 False 1504.000000 1504 78.169000 2570 4966 1 chr2D.!!$F2 2396
3 TraesCS2D01G032600 chr2A 3976140 3978486 2346 False 1679.000000 1679 79.780000 2712 5056 1 chr2A.!!$F2 2344
4 TraesCS2D01G032600 chr2A 2334786 2337206 2420 False 1642.000000 1642 79.088000 2668 5079 1 chr2A.!!$F1 2411
5 TraesCS2D01G032600 chr2A 14918010 14923286 5276 True 1620.966667 7280 90.157333 1 5257 6 chr2A.!!$R2 5256
6 TraesCS2D01G032600 chr2A 4042769 4043892 1123 False 673.000000 673 77.612000 1156 2289 1 chr2A.!!$F3 1133
7 TraesCS2D01G032600 chr2A 14906440 14907512 1072 True 533.500000 560 92.912000 5254 5988 2 chr2A.!!$R1 734
8 TraesCS2D01G032600 chrUn 18048766 18054602 5836 False 2082.800000 5142 91.159200 457 6008 5 chrUn.!!$F2 5551
9 TraesCS2D01G032600 chr4D 3712596 3716679 4083 False 2318.000000 2318 77.159000 1082 5142 1 chr4D.!!$F1 4060
10 TraesCS2D01G032600 chr4D 3418619 3421116 2497 True 1664.000000 1664 78.843000 2465 4972 1 chr4D.!!$R1 2507
11 TraesCS2D01G032600 chr4B 4950928 4954987 4059 True 2281.000000 2281 77.034000 1080 5148 1 chr4B.!!$R1 4068
12 TraesCS2D01G032600 chr4B 6039743 6042509 2766 False 1135.500000 1947 77.868500 1762 4971 2 chr4B.!!$F2 3209
13 TraesCS2D01G032600 chr4A 601309902 601313780 3878 False 2268.000000 2268 77.409000 1080 4972 1 chr4A.!!$F2 3892
14 TraesCS2D01G032600 chr3B 52890125 52892575 2450 True 1666.000000 1666 79.129000 2660 5090 1 chr3B.!!$R1 2430
15 TraesCS2D01G032600 chr2B 6136556 6139258 2702 True 1585.000000 1585 77.482000 2350 5064 1 chr2B.!!$R3 2714
16 TraesCS2D01G032600 chr2B 6156242 6158438 2196 True 1580.000000 1580 79.819000 2858 5052 1 chr2B.!!$R4 2194
17 TraesCS2D01G032600 chr2B 6033749 6034518 769 True 399.000000 399 76.245000 1327 2104 1 chr2B.!!$R1 777
18 TraesCS2D01G032600 chr2B 6039172 6039881 709 True 361.000000 361 76.078000 1342 2054 1 chr2B.!!$R2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 488 0.243636 GTGTTTGAGGGCCGGAATTG 59.756 55.000 5.05 0.0 0.0 2.32 F
1320 1407 0.039165 TCACTGTGCTGCGTACTCTG 60.039 55.000 2.12 0.0 0.0 3.35 F
2637 2870 0.111061 TCACTGGCTTGCACCTTGAT 59.889 50.000 0.00 0.0 0.0 2.57 F
3795 5471 1.202891 AGTGGAGGGAAAAGGAAACGG 60.203 52.381 0.00 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1590 0.839946 CTAGTTCAGTGGGGATGGGG 59.160 60.000 0.00 0.00 0.00 4.96 R
3256 4929 3.812053 AGATGCAGCTGGAATAATCGTTC 59.188 43.478 13.45 2.19 0.00 3.95 R
4014 5933 2.569404 GACAGATCCATATCCCCCAGTC 59.431 54.545 0.00 0.00 31.98 3.51 R
5339 7305 0.543410 TAAACACCTCTCCGGCTGGA 60.543 55.000 15.16 15.16 43.88 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.374689 TTGGTGGTATAGCAAAAGGTCA 57.625 40.909 6.12 0.00 43.29 4.02
32 33 6.068461 TGGTGGTATAGCAAAAGGTCATTA 57.932 37.500 6.12 0.00 33.01 1.90
33 34 6.668645 TGGTGGTATAGCAAAAGGTCATTAT 58.331 36.000 6.12 0.00 33.01 1.28
34 35 7.807198 TGGTGGTATAGCAAAAGGTCATTATA 58.193 34.615 6.12 0.00 33.01 0.98
43 44 8.457238 AGCAAAAGGTCATTATAAATCCTCTC 57.543 34.615 6.84 0.35 0.00 3.20
45 46 8.563732 GCAAAAGGTCATTATAAATCCTCTCTC 58.436 37.037 6.84 0.00 0.00 3.20
47 48 9.620259 AAAAGGTCATTATAAATCCTCTCTCAC 57.380 33.333 6.84 0.00 0.00 3.51
48 49 8.560124 AAGGTCATTATAAATCCTCTCTCACT 57.440 34.615 6.84 0.00 0.00 3.41
49 50 8.560124 AGGTCATTATAAATCCTCTCTCACTT 57.440 34.615 0.00 0.00 0.00 3.16
50 51 9.661954 AGGTCATTATAAATCCTCTCTCACTTA 57.338 33.333 0.00 0.00 0.00 2.24
56 57 5.941555 AAATCCTCTCTCACTTATTCCGT 57.058 39.130 0.00 0.00 0.00 4.69
57 58 8.707796 ATAAATCCTCTCTCACTTATTCCGTA 57.292 34.615 0.00 0.00 0.00 4.02
58 59 6.642707 AATCCTCTCTCACTTATTCCGTAG 57.357 41.667 0.00 0.00 0.00 3.51
59 60 5.113446 TCCTCTCTCACTTATTCCGTAGT 57.887 43.478 0.00 0.00 0.00 2.73
60 61 4.882427 TCCTCTCTCACTTATTCCGTAGTG 59.118 45.833 0.00 0.00 42.41 2.74
61 62 4.641094 CCTCTCTCACTTATTCCGTAGTGT 59.359 45.833 0.00 0.00 41.87 3.55
62 63 5.220892 CCTCTCTCACTTATTCCGTAGTGTC 60.221 48.000 0.00 0.00 41.87 3.67
63 64 5.250982 TCTCTCACTTATTCCGTAGTGTCA 58.749 41.667 0.00 0.00 41.87 3.58
64 65 5.123502 TCTCTCACTTATTCCGTAGTGTCAC 59.876 44.000 0.00 0.00 41.87 3.67
65 66 5.008331 TCTCACTTATTCCGTAGTGTCACT 58.992 41.667 10.99 10.99 41.87 3.41
66 67 6.175471 TCTCACTTATTCCGTAGTGTCACTA 58.825 40.000 8.70 8.70 41.87 2.74
67 68 6.656270 TCTCACTTATTCCGTAGTGTCACTAA 59.344 38.462 14.33 1.32 41.87 2.24
68 69 6.849502 TCACTTATTCCGTAGTGTCACTAAG 58.150 40.000 14.33 15.50 41.87 2.18
70 71 5.713861 ACTTATTCCGTAGTGTCACTAAGGT 59.286 40.000 31.63 21.64 46.21 3.50
71 72 6.886459 ACTTATTCCGTAGTGTCACTAAGGTA 59.114 38.462 31.63 26.41 46.21 3.08
72 73 7.559170 ACTTATTCCGTAGTGTCACTAAGGTAT 59.441 37.037 31.63 29.49 46.21 2.73
73 74 6.786967 ATTCCGTAGTGTCACTAAGGTATT 57.213 37.500 31.63 20.21 46.21 1.89
74 75 5.824904 TCCGTAGTGTCACTAAGGTATTC 57.175 43.478 31.63 12.59 46.21 1.75
75 76 4.641989 TCCGTAGTGTCACTAAGGTATTCC 59.358 45.833 31.63 12.01 46.21 3.01
76 77 4.202090 CCGTAGTGTCACTAAGGTATTCCC 60.202 50.000 27.63 8.52 42.79 3.97
77 78 4.202090 CGTAGTGTCACTAAGGTATTCCCC 60.202 50.000 14.33 0.00 31.62 4.81
78 79 3.798515 AGTGTCACTAAGGTATTCCCCA 58.201 45.455 2.87 0.00 0.00 4.96
79 80 3.518303 AGTGTCACTAAGGTATTCCCCAC 59.482 47.826 2.87 0.00 0.00 4.61
80 81 2.841881 TGTCACTAAGGTATTCCCCACC 59.158 50.000 0.00 0.00 36.22 4.61
81 82 2.172082 GTCACTAAGGTATTCCCCACCC 59.828 54.545 0.00 0.00 36.67 4.61
82 83 1.493446 CACTAAGGTATTCCCCACCCC 59.507 57.143 0.00 0.00 36.67 4.95
83 84 1.146452 CTAAGGTATTCCCCACCCCC 58.854 60.000 0.00 0.00 36.67 5.40
109 110 5.810080 CCCCCTTTTTAATTTGGTACACA 57.190 39.130 0.00 0.00 39.29 3.72
110 111 5.543714 CCCCCTTTTTAATTTGGTACACAC 58.456 41.667 0.00 0.00 39.29 3.82
111 112 5.070580 CCCCCTTTTTAATTTGGTACACACA 59.929 40.000 0.00 0.00 39.29 3.72
112 113 5.986741 CCCCTTTTTAATTTGGTACACACAC 59.013 40.000 0.00 0.00 39.29 3.82
113 114 5.986741 CCCTTTTTAATTTGGTACACACACC 59.013 40.000 0.00 0.00 39.29 4.16
114 115 5.688176 CCTTTTTAATTTGGTACACACACCG 59.312 40.000 0.00 0.00 41.88 4.94
115 116 6.446781 TTTTTAATTTGGTACACACACCGA 57.553 33.333 0.00 0.00 41.88 4.69
116 117 6.636562 TTTTAATTTGGTACACACACCGAT 57.363 33.333 0.00 0.00 41.88 4.18
117 118 5.614923 TTAATTTGGTACACACACCGATG 57.385 39.130 0.00 0.00 41.88 3.84
118 119 2.623878 TTTGGTACACACACCGATGT 57.376 45.000 0.00 0.00 41.88 3.06
119 120 2.623878 TTGGTACACACACCGATGTT 57.376 45.000 0.00 0.00 41.88 2.71
120 121 1.872388 TGGTACACACACCGATGTTG 58.128 50.000 0.00 0.00 41.88 3.33
121 122 1.413077 TGGTACACACACCGATGTTGA 59.587 47.619 0.00 0.00 41.88 3.18
122 123 2.037902 TGGTACACACACCGATGTTGAT 59.962 45.455 0.00 0.00 41.88 2.57
123 124 2.415168 GGTACACACACCGATGTTGATG 59.585 50.000 0.00 0.00 36.72 3.07
124 125 2.542020 ACACACACCGATGTTGATGA 57.458 45.000 0.00 0.00 36.72 2.92
125 126 2.143122 ACACACACCGATGTTGATGAC 58.857 47.619 0.00 0.00 36.72 3.06
126 127 2.142319 CACACACCGATGTTGATGACA 58.858 47.619 0.00 0.00 43.71 3.58
127 128 2.547634 CACACACCGATGTTGATGACAA 59.452 45.455 0.00 0.00 42.62 3.18
128 129 3.189080 CACACACCGATGTTGATGACAAT 59.811 43.478 0.00 0.00 42.62 2.71
129 130 3.436704 ACACACCGATGTTGATGACAATC 59.563 43.478 0.00 0.00 42.62 2.67
130 131 3.436359 CACACCGATGTTGATGACAATCA 59.564 43.478 0.00 0.00 42.62 2.57
144 145 7.710896 TGATGACAATCAAAACATGTTGTACA 58.289 30.769 12.82 6.33 39.92 2.90
145 146 8.193438 TGATGACAATCAAAACATGTTGTACAA 58.807 29.630 12.82 3.59 39.92 2.41
146 147 9.195411 GATGACAATCAAAACATGTTGTACAAT 57.805 29.630 12.82 0.00 35.12 2.71
148 149 9.676195 TGACAATCAAAACATGTTGTACAATAG 57.324 29.630 12.82 7.39 35.12 1.73
149 150 9.891828 GACAATCAAAACATGTTGTACAATAGA 57.108 29.630 12.82 2.04 35.12 1.98
184 185 9.965824 TGTTTCAATTTGACCTTTCTAATTCTC 57.034 29.630 0.00 0.00 35.70 2.87
185 186 9.965824 GTTTCAATTTGACCTTTCTAATTCTCA 57.034 29.630 0.00 0.00 35.70 3.27
188 189 9.745018 TCAATTTGACCTTTCTAATTCTCATCT 57.255 29.630 0.00 0.00 35.70 2.90
194 195 9.426534 TGACCTTTCTAATTCTCATCTAGATGA 57.573 33.333 29.17 29.17 44.83 2.92
207 208 7.473735 TCATCTAGATGAGAACTGACAAAGT 57.526 36.000 27.93 0.00 42.42 2.66
208 209 7.542890 TCATCTAGATGAGAACTGACAAAGTC 58.457 38.462 27.93 0.00 42.42 3.01
209 210 7.395772 TCATCTAGATGAGAACTGACAAAGTCT 59.604 37.037 27.93 0.00 42.42 3.24
210 211 7.531857 TCTAGATGAGAACTGACAAAGTCTT 57.468 36.000 0.00 0.00 38.56 3.01
211 212 8.637196 TCTAGATGAGAACTGACAAAGTCTTA 57.363 34.615 0.00 0.00 38.56 2.10
212 213 9.249053 TCTAGATGAGAACTGACAAAGTCTTAT 57.751 33.333 0.00 0.00 38.56 1.73
213 214 9.515020 CTAGATGAGAACTGACAAAGTCTTATC 57.485 37.037 0.00 0.00 38.56 1.75
214 215 8.133024 AGATGAGAACTGACAAAGTCTTATCT 57.867 34.615 9.46 9.46 38.56 1.98
215 216 9.249053 AGATGAGAACTGACAAAGTCTTATCTA 57.751 33.333 11.97 0.00 38.56 1.98
216 217 9.862371 GATGAGAACTGACAAAGTCTTATCTAA 57.138 33.333 0.00 0.00 38.56 2.10
220 221 9.660180 AGAACTGACAAAGTCTTATCTAATTCC 57.340 33.333 0.00 0.00 38.56 3.01
221 222 8.480643 AACTGACAAAGTCTTATCTAATTCCG 57.519 34.615 0.00 0.00 38.56 4.30
222 223 7.837863 ACTGACAAAGTCTTATCTAATTCCGA 58.162 34.615 0.00 0.00 31.64 4.55
223 224 7.760340 ACTGACAAAGTCTTATCTAATTCCGAC 59.240 37.037 0.00 0.00 31.64 4.79
224 225 7.608153 TGACAAAGTCTTATCTAATTCCGACA 58.392 34.615 0.00 0.00 33.15 4.35
225 226 7.544566 TGACAAAGTCTTATCTAATTCCGACAC 59.455 37.037 0.00 0.00 33.15 3.67
226 227 6.817140 ACAAAGTCTTATCTAATTCCGACACC 59.183 38.462 0.00 0.00 0.00 4.16
227 228 6.793505 AAGTCTTATCTAATTCCGACACCT 57.206 37.500 0.00 0.00 0.00 4.00
228 229 6.793505 AGTCTTATCTAATTCCGACACCTT 57.206 37.500 0.00 0.00 0.00 3.50
229 230 7.184067 AGTCTTATCTAATTCCGACACCTTT 57.816 36.000 0.00 0.00 0.00 3.11
230 231 7.266400 AGTCTTATCTAATTCCGACACCTTTC 58.734 38.462 0.00 0.00 0.00 2.62
231 232 7.039882 GTCTTATCTAATTCCGACACCTTTCA 58.960 38.462 0.00 0.00 0.00 2.69
232 233 7.548075 GTCTTATCTAATTCCGACACCTTTCAA 59.452 37.037 0.00 0.00 0.00 2.69
233 234 8.265055 TCTTATCTAATTCCGACACCTTTCAAT 58.735 33.333 0.00 0.00 0.00 2.57
234 235 8.801882 TTATCTAATTCCGACACCTTTCAATT 57.198 30.769 0.00 0.00 0.00 2.32
235 236 7.703058 ATCTAATTCCGACACCTTTCAATTT 57.297 32.000 0.00 0.00 0.00 1.82
236 237 8.801882 ATCTAATTCCGACACCTTTCAATTTA 57.198 30.769 0.00 0.00 0.00 1.40
237 238 8.801882 TCTAATTCCGACACCTTTCAATTTAT 57.198 30.769 0.00 0.00 0.00 1.40
238 239 8.673711 TCTAATTCCGACACCTTTCAATTTATG 58.326 33.333 0.00 0.00 0.00 1.90
239 240 6.834168 ATTCCGACACCTTTCAATTTATGT 57.166 33.333 0.00 0.00 0.00 2.29
240 241 5.621197 TCCGACACCTTTCAATTTATGTG 57.379 39.130 0.00 0.00 0.00 3.21
241 242 5.067273 TCCGACACCTTTCAATTTATGTGT 58.933 37.500 0.00 0.00 39.45 3.72
242 243 6.231951 TCCGACACCTTTCAATTTATGTGTA 58.768 36.000 0.00 0.00 37.10 2.90
243 244 6.882140 TCCGACACCTTTCAATTTATGTGTAT 59.118 34.615 0.00 0.00 37.10 2.29
244 245 8.041919 TCCGACACCTTTCAATTTATGTGTATA 58.958 33.333 0.00 0.00 37.10 1.47
245 246 8.836413 CCGACACCTTTCAATTTATGTGTATAT 58.164 33.333 0.00 0.00 37.10 0.86
292 293 7.851822 TTTTTGTTCGATTGAGTTATGCTTC 57.148 32.000 0.00 0.00 0.00 3.86
293 294 6.801539 TTTGTTCGATTGAGTTATGCTTCT 57.198 33.333 0.00 0.00 0.00 2.85
294 295 6.801539 TTGTTCGATTGAGTTATGCTTCTT 57.198 33.333 0.00 0.00 0.00 2.52
295 296 6.408858 TGTTCGATTGAGTTATGCTTCTTC 57.591 37.500 0.00 0.00 0.00 2.87
296 297 6.166279 TGTTCGATTGAGTTATGCTTCTTCT 58.834 36.000 0.00 0.00 0.00 2.85
297 298 6.650807 TGTTCGATTGAGTTATGCTTCTTCTT 59.349 34.615 0.00 0.00 0.00 2.52
298 299 7.173218 TGTTCGATTGAGTTATGCTTCTTCTTT 59.827 33.333 0.00 0.00 0.00 2.52
299 300 7.672983 TCGATTGAGTTATGCTTCTTCTTTT 57.327 32.000 0.00 0.00 0.00 2.27
300 301 8.099364 TCGATTGAGTTATGCTTCTTCTTTTT 57.901 30.769 0.00 0.00 0.00 1.94
336 337 7.658179 ACTTTAGGTGTATATTCATGCATCG 57.342 36.000 0.00 0.00 33.46 3.84
337 338 7.217200 ACTTTAGGTGTATATTCATGCATCGT 58.783 34.615 0.00 0.00 33.46 3.73
338 339 7.715249 ACTTTAGGTGTATATTCATGCATCGTT 59.285 33.333 0.00 0.00 33.46 3.85
339 340 8.445275 TTTAGGTGTATATTCATGCATCGTTT 57.555 30.769 0.00 0.00 33.46 3.60
340 341 9.549078 TTTAGGTGTATATTCATGCATCGTTTA 57.451 29.630 0.00 0.00 33.46 2.01
341 342 7.421530 AGGTGTATATTCATGCATCGTTTAC 57.578 36.000 0.00 0.00 33.46 2.01
342 343 6.145534 AGGTGTATATTCATGCATCGTTTACG 59.854 38.462 0.00 0.00 33.46 3.18
343 344 6.073980 GGTGTATATTCATGCATCGTTTACGT 60.074 38.462 0.00 0.00 40.80 3.57
344 345 7.115236 GGTGTATATTCATGCATCGTTTACGTA 59.885 37.037 0.00 0.00 40.80 3.57
345 346 8.154038 GTGTATATTCATGCATCGTTTACGTAG 58.846 37.037 0.00 0.00 40.80 3.51
347 348 7.709269 ATATTCATGCATCGTTTACGTAGTT 57.291 32.000 0.00 0.00 37.78 2.24
348 349 4.833469 TCATGCATCGTTTACGTAGTTG 57.167 40.909 0.00 0.00 37.78 3.16
349 350 3.061563 TCATGCATCGTTTACGTAGTTGC 59.938 43.478 0.00 8.60 37.78 4.17
350 351 2.405172 TGCATCGTTTACGTAGTTGCA 58.595 42.857 12.46 12.46 37.78 4.08
351 352 2.997303 TGCATCGTTTACGTAGTTGCAT 59.003 40.909 12.46 0.00 37.78 3.96
352 353 3.181525 TGCATCGTTTACGTAGTTGCATG 60.182 43.478 12.46 6.95 37.78 4.06
353 354 3.061563 GCATCGTTTACGTAGTTGCATGA 59.938 43.478 0.00 0.52 37.78 3.07
354 355 4.779082 GCATCGTTTACGTAGTTGCATGAG 60.779 45.833 0.00 0.00 37.78 2.90
355 356 3.904571 TCGTTTACGTAGTTGCATGAGT 58.095 40.909 0.00 0.00 37.78 3.41
356 357 4.300803 TCGTTTACGTAGTTGCATGAGTT 58.699 39.130 0.00 0.00 37.78 3.01
357 358 4.383649 TCGTTTACGTAGTTGCATGAGTTC 59.616 41.667 0.00 0.00 37.78 3.01
358 359 4.625135 GTTTACGTAGTTGCATGAGTTCG 58.375 43.478 0.00 0.00 37.78 3.95
359 360 2.433868 ACGTAGTTGCATGAGTTCGT 57.566 45.000 0.00 0.00 37.78 3.85
360 361 3.564235 ACGTAGTTGCATGAGTTCGTA 57.436 42.857 0.00 0.00 37.78 3.43
361 362 4.106029 ACGTAGTTGCATGAGTTCGTAT 57.894 40.909 0.00 0.00 37.78 3.06
362 363 3.857665 ACGTAGTTGCATGAGTTCGTATG 59.142 43.478 0.00 0.00 37.78 2.39
363 364 3.242944 CGTAGTTGCATGAGTTCGTATGG 59.757 47.826 0.00 0.00 0.00 2.74
364 365 3.334583 AGTTGCATGAGTTCGTATGGT 57.665 42.857 0.00 0.00 0.00 3.55
365 366 3.674997 AGTTGCATGAGTTCGTATGGTT 58.325 40.909 0.00 0.00 0.00 3.67
366 367 4.072131 AGTTGCATGAGTTCGTATGGTTT 58.928 39.130 0.00 0.00 0.00 3.27
367 368 4.518970 AGTTGCATGAGTTCGTATGGTTTT 59.481 37.500 0.00 0.00 0.00 2.43
368 369 4.418013 TGCATGAGTTCGTATGGTTTTG 57.582 40.909 0.00 0.00 0.00 2.44
369 370 3.818210 TGCATGAGTTCGTATGGTTTTGT 59.182 39.130 0.00 0.00 0.00 2.83
370 371 4.158384 GCATGAGTTCGTATGGTTTTGTG 58.842 43.478 0.00 0.00 0.00 3.33
371 372 4.722194 CATGAGTTCGTATGGTTTTGTGG 58.278 43.478 0.00 0.00 0.00 4.17
372 373 2.550606 TGAGTTCGTATGGTTTTGTGGC 59.449 45.455 0.00 0.00 0.00 5.01
373 374 2.550606 GAGTTCGTATGGTTTTGTGGCA 59.449 45.455 0.00 0.00 0.00 4.92
374 375 3.153919 AGTTCGTATGGTTTTGTGGCAT 58.846 40.909 0.00 0.00 0.00 4.40
375 376 3.057596 AGTTCGTATGGTTTTGTGGCATG 60.058 43.478 0.00 0.00 0.00 4.06
376 377 1.201181 TCGTATGGTTTTGTGGCATGC 59.799 47.619 9.90 9.90 0.00 4.06
377 378 1.202114 CGTATGGTTTTGTGGCATGCT 59.798 47.619 18.92 0.00 0.00 3.79
378 379 2.421775 CGTATGGTTTTGTGGCATGCTA 59.578 45.455 18.92 9.16 0.00 3.49
379 380 3.119673 CGTATGGTTTTGTGGCATGCTAA 60.120 43.478 18.92 8.01 0.00 3.09
380 381 4.617067 CGTATGGTTTTGTGGCATGCTAAA 60.617 41.667 18.92 13.50 0.00 1.85
381 382 4.556592 ATGGTTTTGTGGCATGCTAAAT 57.443 36.364 18.92 0.00 0.00 1.40
382 383 4.348863 TGGTTTTGTGGCATGCTAAATT 57.651 36.364 18.92 0.00 0.00 1.82
383 384 4.063689 TGGTTTTGTGGCATGCTAAATTG 58.936 39.130 18.92 0.00 0.00 2.32
384 385 3.120234 GGTTTTGTGGCATGCTAAATTGC 60.120 43.478 18.92 0.00 38.14 3.56
385 386 3.681593 TTTGTGGCATGCTAAATTGCT 57.318 38.095 18.92 0.00 38.88 3.91
386 387 4.797800 TTTGTGGCATGCTAAATTGCTA 57.202 36.364 18.92 0.00 38.88 3.49
387 388 4.797800 TTGTGGCATGCTAAATTGCTAA 57.202 36.364 18.92 0.00 38.88 3.09
388 389 5.341872 TTGTGGCATGCTAAATTGCTAAT 57.658 34.783 18.92 0.00 38.88 1.73
389 390 5.341872 TGTGGCATGCTAAATTGCTAATT 57.658 34.783 18.92 0.00 38.88 1.40
390 391 5.110598 TGTGGCATGCTAAATTGCTAATTG 58.889 37.500 18.92 0.00 38.88 2.32
391 392 5.105432 TGTGGCATGCTAAATTGCTAATTGA 60.105 36.000 18.92 0.00 38.88 2.57
392 393 5.461078 GTGGCATGCTAAATTGCTAATTGAG 59.539 40.000 18.92 0.00 38.88 3.02
393 394 4.986659 GGCATGCTAAATTGCTAATTGAGG 59.013 41.667 18.92 0.00 38.88 3.86
394 395 5.452356 GGCATGCTAAATTGCTAATTGAGGT 60.452 40.000 18.92 0.00 38.88 3.85
395 396 5.461078 GCATGCTAAATTGCTAATTGAGGTG 59.539 40.000 11.37 0.00 35.95 4.00
396 397 6.567050 CATGCTAAATTGCTAATTGAGGTGT 58.433 36.000 7.62 0.00 31.10 4.16
397 398 6.194796 TGCTAAATTGCTAATTGAGGTGTC 57.805 37.500 7.62 0.00 31.10 3.67
398 399 5.125417 TGCTAAATTGCTAATTGAGGTGTCC 59.875 40.000 7.62 0.00 31.10 4.02
399 400 5.125417 GCTAAATTGCTAATTGAGGTGTCCA 59.875 40.000 7.62 0.00 31.10 4.02
400 401 6.350110 GCTAAATTGCTAATTGAGGTGTCCAA 60.350 38.462 7.62 0.00 31.10 3.53
401 402 6.610075 AAATTGCTAATTGAGGTGTCCAAT 57.390 33.333 0.00 0.00 35.92 3.16
402 403 6.610075 AATTGCTAATTGAGGTGTCCAATT 57.390 33.333 0.00 0.00 43.93 2.32
403 404 5.389859 TTGCTAATTGAGGTGTCCAATTG 57.610 39.130 10.32 0.00 42.28 2.32
404 405 4.406456 TGCTAATTGAGGTGTCCAATTGT 58.594 39.130 4.43 0.00 42.28 2.71
405 406 4.218200 TGCTAATTGAGGTGTCCAATTGTG 59.782 41.667 4.43 0.00 42.28 3.33
406 407 4.458989 GCTAATTGAGGTGTCCAATTGTGA 59.541 41.667 4.43 0.00 42.28 3.58
407 408 5.392380 GCTAATTGAGGTGTCCAATTGTGAG 60.392 44.000 4.43 3.12 42.28 3.51
408 409 3.855255 TTGAGGTGTCCAATTGTGAGA 57.145 42.857 4.43 0.00 0.00 3.27
409 410 3.855255 TGAGGTGTCCAATTGTGAGAA 57.145 42.857 4.43 0.00 0.00 2.87
410 411 3.743521 TGAGGTGTCCAATTGTGAGAAG 58.256 45.455 4.43 0.00 0.00 2.85
411 412 3.077359 GAGGTGTCCAATTGTGAGAAGG 58.923 50.000 4.43 0.00 0.00 3.46
412 413 2.711009 AGGTGTCCAATTGTGAGAAGGA 59.289 45.455 4.43 0.00 0.00 3.36
413 414 3.138283 AGGTGTCCAATTGTGAGAAGGAA 59.862 43.478 4.43 0.00 0.00 3.36
414 415 3.888930 GGTGTCCAATTGTGAGAAGGAAA 59.111 43.478 4.43 0.00 0.00 3.13
415 416 4.340950 GGTGTCCAATTGTGAGAAGGAAAA 59.659 41.667 4.43 0.00 0.00 2.29
416 417 5.011023 GGTGTCCAATTGTGAGAAGGAAAAT 59.989 40.000 4.43 0.00 0.00 1.82
417 418 6.462909 GGTGTCCAATTGTGAGAAGGAAAATT 60.463 38.462 4.43 0.00 0.00 1.82
418 419 6.986231 GTGTCCAATTGTGAGAAGGAAAATTT 59.014 34.615 4.43 0.00 0.00 1.82
419 420 6.985645 TGTCCAATTGTGAGAAGGAAAATTTG 59.014 34.615 4.43 0.00 0.00 2.32
420 421 7.147759 TGTCCAATTGTGAGAAGGAAAATTTGA 60.148 33.333 4.43 0.00 0.00 2.69
421 422 7.383300 GTCCAATTGTGAGAAGGAAAATTTGAG 59.617 37.037 4.43 0.00 0.00 3.02
422 423 7.287466 TCCAATTGTGAGAAGGAAAATTTGAGA 59.713 33.333 4.43 0.00 0.00 3.27
423 424 7.383300 CCAATTGTGAGAAGGAAAATTTGAGAC 59.617 37.037 4.43 0.00 0.00 3.36
424 425 5.673337 TGTGAGAAGGAAAATTTGAGACG 57.327 39.130 0.00 0.00 0.00 4.18
425 426 5.123227 TGTGAGAAGGAAAATTTGAGACGT 58.877 37.500 0.00 0.00 0.00 4.34
426 427 5.007626 TGTGAGAAGGAAAATTTGAGACGTG 59.992 40.000 0.00 0.00 0.00 4.49
427 428 5.236478 GTGAGAAGGAAAATTTGAGACGTGA 59.764 40.000 0.00 0.00 0.00 4.35
428 429 5.236478 TGAGAAGGAAAATTTGAGACGTGAC 59.764 40.000 0.00 0.00 0.00 3.67
429 430 4.515567 AGAAGGAAAATTTGAGACGTGACC 59.484 41.667 0.00 0.00 0.00 4.02
430 431 3.815809 AGGAAAATTTGAGACGTGACCA 58.184 40.909 0.00 0.00 0.00 4.02
431 432 4.204012 AGGAAAATTTGAGACGTGACCAA 58.796 39.130 0.00 0.00 0.00 3.67
432 433 4.827284 AGGAAAATTTGAGACGTGACCAAT 59.173 37.500 0.00 0.00 0.00 3.16
433 434 5.048713 AGGAAAATTTGAGACGTGACCAATC 60.049 40.000 0.00 0.00 0.00 2.67
434 435 5.278266 GGAAAATTTGAGACGTGACCAATCA 60.278 40.000 0.00 0.00 0.00 2.57
435 436 5.362556 AAATTTGAGACGTGACCAATCAG 57.637 39.130 0.00 0.00 34.75 2.90
436 437 3.469008 TTTGAGACGTGACCAATCAGT 57.531 42.857 0.00 0.00 34.75 3.41
437 438 2.438868 TGAGACGTGACCAATCAGTG 57.561 50.000 0.00 0.00 34.75 3.66
438 439 1.071605 GAGACGTGACCAATCAGTGC 58.928 55.000 0.00 0.00 34.75 4.40
439 440 0.320771 AGACGTGACCAATCAGTGCC 60.321 55.000 0.00 0.00 34.75 5.01
440 441 1.298859 GACGTGACCAATCAGTGCCC 61.299 60.000 0.00 0.00 34.75 5.36
441 442 2.390599 CGTGACCAATCAGTGCCCG 61.391 63.158 0.00 0.00 34.75 6.13
442 443 2.359850 TGACCAATCAGTGCCCGC 60.360 61.111 0.00 0.00 0.00 6.13
443 444 2.359850 GACCAATCAGTGCCCGCA 60.360 61.111 0.00 0.00 0.00 5.69
444 445 2.360350 ACCAATCAGTGCCCGCAG 60.360 61.111 0.00 0.00 0.00 5.18
464 465 4.849310 GCGCCCGGGCAATGTCTA 62.849 66.667 42.78 0.00 42.06 2.59
487 488 0.243636 GTGTTTGAGGGCCGGAATTG 59.756 55.000 5.05 0.00 0.00 2.32
498 499 0.675522 CCGGAATTGCCAAGTACGGT 60.676 55.000 19.91 0.00 35.94 4.83
536 570 5.695816 ACGCATGCACTACAAAATTTTCAAT 59.304 32.000 19.57 0.00 0.00 2.57
591 625 8.030106 GGAAGACTATGTAGGAATATCCGAAAG 58.970 40.741 0.00 0.00 42.75 2.62
704 738 5.048224 TCGTATCACTTCCGAAAGAGAGTTT 60.048 40.000 0.00 0.00 35.88 2.66
759 793 1.082117 GTCCTTATGACCGCACACCG 61.082 60.000 0.00 0.00 38.09 4.94
827 899 9.194271 GTAGATAAATTAACTTGGACCGAGATC 57.806 37.037 16.24 6.05 0.00 2.75
828 900 8.024145 AGATAAATTAACTTGGACCGAGATCT 57.976 34.615 16.24 8.18 0.00 2.75
829 901 8.487028 AGATAAATTAACTTGGACCGAGATCTT 58.513 33.333 16.24 2.15 0.00 2.40
830 902 6.986904 AAATTAACTTGGACCGAGATCTTC 57.013 37.500 16.24 0.00 0.00 2.87
831 903 4.467198 TTAACTTGGACCGAGATCTTCC 57.533 45.455 16.24 5.14 0.00 3.46
839 911 1.134580 ACCGAGATCTTCCGACGACTA 60.135 52.381 5.45 0.00 0.00 2.59
880 958 8.918961 TTGTTAATTTTGTACACCAGTTTCAG 57.081 30.769 0.00 0.00 0.00 3.02
902 980 4.878397 AGGTACATCTATCAAAGTGCTTGC 59.122 41.667 0.00 0.00 34.76 4.01
1106 1184 1.072965 CCTGGAAGAACAAGCAGAGGT 59.927 52.381 0.00 0.00 34.07 3.85
1136 1214 2.242043 CTGGAAAGCCACACTCCAAAT 58.758 47.619 0.00 0.00 39.92 2.32
1145 1223 2.756760 CCACACTCCAAATCCATCCAAG 59.243 50.000 0.00 0.00 0.00 3.61
1266 1353 0.108963 CCGAGATCTCTCTACCCGGT 59.891 60.000 20.26 0.00 40.75 5.28
1320 1407 0.039165 TCACTGTGCTGCGTACTCTG 60.039 55.000 2.12 0.00 0.00 3.35
1503 1590 1.529244 AGCCAACCACTTGTCTGGC 60.529 57.895 3.72 3.72 44.58 4.85
1546 1635 2.834113 ACCTAAAGAAGCTGGCTAGGA 58.166 47.619 13.34 0.00 34.43 2.94
1602 1691 8.220559 CCTATTCCAAGAAATCTAGGGAAATCA 58.779 37.037 16.01 7.62 40.55 2.57
1678 1767 5.221661 CCTCAAGAACTAGGTTACCTGTTGT 60.222 44.000 15.13 11.55 34.61 3.32
1699 1788 8.519526 TGTTGTGTTTAAATCAGTTGTCTCTTT 58.480 29.630 0.00 0.00 0.00 2.52
1857 1946 2.421424 GGATCTTAGCAGCAACCAACTG 59.579 50.000 0.00 0.00 38.22 3.16
1954 2043 6.602278 TCTGGATATCTTCCTCGAGAACTAA 58.398 40.000 15.71 1.75 45.68 2.24
1956 2045 6.602278 TGGATATCTTCCTCGAGAACTAAGA 58.398 40.000 15.71 16.19 45.68 2.10
2064 2153 1.139654 TCTATCTTGCGCCTTGATGCT 59.860 47.619 4.18 0.00 0.00 3.79
2080 2169 5.894298 TGATGCTAACCACTTCTATGGAT 57.106 39.130 0.00 0.00 43.02 3.41
2289 2378 2.421424 GGATCTTAGCAGCAACCAACTG 59.579 50.000 0.00 0.00 38.22 3.16
2388 2477 5.305644 TGGATATCTTCCTCAAGAACTAGGC 59.694 44.000 2.05 0.00 45.68 3.93
2415 2504 8.599624 ACCTGTCAAATCTTGAATATTTGGAT 57.400 30.769 13.72 0.00 42.17 3.41
2486 2575 4.541973 TGACAAAGCTCTCTATCTTGCA 57.458 40.909 0.00 0.00 0.00 4.08
2515 2604 8.664669 TGATGCTAACCACTTCTATGGATATA 57.335 34.615 0.00 0.00 43.02 0.86
2522 2611 7.411486 ACCACTTCTATGGATATATTCCTCG 57.589 40.000 0.00 0.00 45.68 4.63
2558 2647 5.653769 ACATGGTGAATCTTGATAACTTGGG 59.346 40.000 0.00 0.00 0.00 4.12
2569 2658 3.512329 TGATAACTTGGGTCTAAGCGACA 59.488 43.478 0.00 0.00 44.68 4.35
2570 2659 2.922740 AACTTGGGTCTAAGCGACAA 57.077 45.000 0.00 0.00 44.68 3.18
2571 2660 2.165319 ACTTGGGTCTAAGCGACAAC 57.835 50.000 0.00 0.00 44.68 3.32
2572 2661 1.414919 ACTTGGGTCTAAGCGACAACA 59.585 47.619 0.00 0.00 44.68 3.33
2573 2662 2.158871 ACTTGGGTCTAAGCGACAACAA 60.159 45.455 0.00 0.00 44.68 2.83
2574 2663 2.851263 TGGGTCTAAGCGACAACAAT 57.149 45.000 0.00 0.00 44.68 2.71
2583 2672 1.278985 AGCGACAACAATCTCATGGGA 59.721 47.619 0.00 0.00 0.00 4.37
2611 2700 4.156477 TCCCAATACCTTTGGAAGTTTGG 58.844 43.478 5.95 0.00 42.06 3.28
2635 2868 1.954528 CTCACTGGCTTGCACCTTG 59.045 57.895 0.00 0.00 0.00 3.61
2636 2869 0.535780 CTCACTGGCTTGCACCTTGA 60.536 55.000 0.00 0.00 0.00 3.02
2637 2870 0.111061 TCACTGGCTTGCACCTTGAT 59.889 50.000 0.00 0.00 0.00 2.57
2686 3207 2.165845 CGAGAACTAGGTTACCTGGTGG 59.834 54.545 20.89 7.51 44.56 4.61
2702 3223 4.098501 CCTGGTGGATTTAGAAGAATTGGC 59.901 45.833 0.00 0.00 34.57 4.52
2784 4457 2.223144 CAGAAAATTGCGTCTCGGTGAA 59.777 45.455 0.00 0.00 0.00 3.18
3341 5014 3.181480 GGAGCATTGTCCAGTCTAGAGTC 60.181 52.174 0.00 0.00 36.51 3.36
3642 5315 6.647481 TGAAAAGCTTGACATCCATTGATTTG 59.353 34.615 0.00 0.00 0.00 2.32
3795 5471 1.202891 AGTGGAGGGAAAAGGAAACGG 60.203 52.381 0.00 0.00 0.00 4.44
3953 5630 6.740693 TCTCTATTTGGAATTTTGATGGGGA 58.259 36.000 0.00 0.00 0.00 4.81
4014 5933 5.895636 TTAGTGAAACACATTGCATAGGG 57.104 39.130 4.75 0.00 41.43 3.53
4092 6011 5.814188 TGCAGTGAAGAAGATACACATGATC 59.186 40.000 0.00 0.00 37.05 2.92
4099 6018 8.850156 TGAAGAAGATACACATGATCGAAGATA 58.150 33.333 0.00 0.00 45.12 1.98
4181 6100 8.136800 TCGGCATAGAAACATCGTAAAACTATA 58.863 33.333 0.00 0.00 0.00 1.31
4761 6715 7.659390 GGAGATTTTCTCTTTTCTCTCTTGTCA 59.341 37.037 4.65 0.00 42.95 3.58
4906 6860 2.880443 ACCCATCAAGCAGACAAACAT 58.120 42.857 0.00 0.00 0.00 2.71
5144 7110 6.526526 TGGAACTAGCAAACATGTACTAACA 58.473 36.000 0.00 0.00 40.69 2.41
5149 7115 8.718102 ACTAGCAAACATGTACTAACATAAGG 57.282 34.615 0.00 0.00 44.70 2.69
5261 7227 3.121944 GCCTCGATGCATTAGTTATGTCG 59.878 47.826 7.89 0.00 35.32 4.35
5272 7238 8.151596 TGCATTAGTTATGTCGTTATAATGGGA 58.848 33.333 4.86 0.00 36.57 4.37
5283 7249 7.827236 TGTCGTTATAATGGGACTTTGAAAGAT 59.173 33.333 12.53 0.00 0.00 2.40
5285 7251 7.282224 TCGTTATAATGGGACTTTGAAAGATGG 59.718 37.037 12.53 0.00 0.00 3.51
5288 7254 4.664688 ATGGGACTTTGAAAGATGGACT 57.335 40.909 12.53 0.00 0.00 3.85
5364 7330 2.280628 CCGGAGAGGTGTTTAATGCTC 58.719 52.381 0.00 0.00 34.51 4.26
5368 7334 3.585862 GAGAGGTGTTTAATGCTCGTCA 58.414 45.455 0.00 0.00 0.00 4.35
5371 7337 1.127951 GGTGTTTAATGCTCGTCACCG 59.872 52.381 0.00 0.00 36.48 4.94
5395 7361 2.354188 CGAACGTGTGGCACTCGA 60.354 61.111 38.50 10.55 38.33 4.04
5415 7381 1.597461 GCGCCAGAGTAGGTTCCTT 59.403 57.895 0.00 0.00 0.00 3.36
5458 7425 0.179163 GTAGGCTGGCAAACGAATGC 60.179 55.000 3.38 8.36 45.67 3.56
5466 7433 0.597118 GCAAACGAATGCCTGCACAA 60.597 50.000 6.00 0.00 40.49 3.33
5535 7502 4.742201 GCGTCCGCTCTGAGGCAA 62.742 66.667 6.83 0.00 43.67 4.52
5542 7509 0.445436 CGCTCTGAGGCAACATGAAC 59.555 55.000 6.83 0.00 41.41 3.18
5544 7511 1.800805 CTCTGAGGCAACATGAACGT 58.199 50.000 0.00 0.00 41.41 3.99
5808 8115 3.005261 AGGCATTGTTTGTTTGTGCGATA 59.995 39.130 0.00 0.00 36.70 2.92
5898 8207 2.014335 TGTGTCGATGCCTTCATCTG 57.986 50.000 0.00 0.00 45.32 2.90
5919 8228 9.846248 CATCTGTTTAAGAAACCTTTCCATAAG 57.154 33.333 0.00 0.00 40.67 1.73
5925 8234 5.333566 AGAAACCTTTCCATAAGTTCCCA 57.666 39.130 0.00 0.00 37.92 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.604657 ACGGAATAAGTGAGAGAGGATTTAT 57.395 36.000 0.00 0.00 0.00 1.40
33 34 7.778853 ACTACGGAATAAGTGAGAGAGGATTTA 59.221 37.037 0.00 0.00 0.00 1.40
34 35 5.941555 ACGGAATAAGTGAGAGAGGATTT 57.058 39.130 0.00 0.00 0.00 2.17
37 38 4.882427 CACTACGGAATAAGTGAGAGAGGA 59.118 45.833 0.00 0.00 44.79 3.71
38 39 4.641094 ACACTACGGAATAAGTGAGAGAGG 59.359 45.833 9.30 0.00 44.79 3.69
39 40 5.354513 TGACACTACGGAATAAGTGAGAGAG 59.645 44.000 9.30 0.00 44.79 3.20
40 41 5.123502 GTGACACTACGGAATAAGTGAGAGA 59.876 44.000 9.30 0.00 44.79 3.10
42 43 5.008331 AGTGACACTACGGAATAAGTGAGA 58.992 41.667 6.24 0.00 44.79 3.27
43 44 5.312120 AGTGACACTACGGAATAAGTGAG 57.688 43.478 6.24 0.00 44.79 3.51
45 46 6.034591 CCTTAGTGACACTACGGAATAAGTG 58.965 44.000 26.54 8.48 41.22 3.16
47 48 6.205101 ACCTTAGTGACACTACGGAATAAG 57.795 41.667 33.48 20.06 41.22 1.73
48 49 7.886629 ATACCTTAGTGACACTACGGAATAA 57.113 36.000 33.48 20.13 41.22 1.40
49 50 7.013655 GGAATACCTTAGTGACACTACGGAATA 59.986 40.741 33.48 21.35 41.22 1.75
50 51 6.183360 GGAATACCTTAGTGACACTACGGAAT 60.183 42.308 33.48 22.06 41.22 3.01
51 52 5.126061 GGAATACCTTAGTGACACTACGGAA 59.874 44.000 33.48 14.74 41.22 4.30
52 53 4.641989 GGAATACCTTAGTGACACTACGGA 59.358 45.833 33.48 21.51 41.22 4.69
53 54 4.202090 GGGAATACCTTAGTGACACTACGG 60.202 50.000 28.02 28.02 43.49 4.02
54 55 4.202090 GGGGAATACCTTAGTGACACTACG 60.202 50.000 14.96 12.93 40.03 3.51
55 56 4.713321 TGGGGAATACCTTAGTGACACTAC 59.287 45.833 14.96 2.04 40.03 2.73
56 57 4.713321 GTGGGGAATACCTTAGTGACACTA 59.287 45.833 11.37 11.37 40.03 2.74
57 58 3.518303 GTGGGGAATACCTTAGTGACACT 59.482 47.826 13.68 13.68 40.03 3.55
58 59 3.370209 GGTGGGGAATACCTTAGTGACAC 60.370 52.174 0.00 0.00 40.03 3.67
59 60 2.841881 GGTGGGGAATACCTTAGTGACA 59.158 50.000 0.00 0.00 40.03 3.58
60 61 2.172082 GGGTGGGGAATACCTTAGTGAC 59.828 54.545 0.00 0.00 40.03 3.67
61 62 2.484602 GGGTGGGGAATACCTTAGTGA 58.515 52.381 0.00 0.00 40.03 3.41
62 63 1.493446 GGGGTGGGGAATACCTTAGTG 59.507 57.143 0.00 0.00 40.03 2.74
63 64 1.630035 GGGGGTGGGGAATACCTTAGT 60.630 57.143 0.00 0.00 40.03 2.24
64 65 1.146452 GGGGGTGGGGAATACCTTAG 58.854 60.000 0.00 0.00 40.03 2.18
65 66 3.363266 GGGGGTGGGGAATACCTTA 57.637 57.895 0.00 0.00 40.03 2.69
66 67 4.199287 GGGGGTGGGGAATACCTT 57.801 61.111 0.00 0.00 40.03 3.50
87 88 5.070580 TGTGTGTACCAAATTAAAAAGGGGG 59.929 40.000 0.00 0.00 0.00 5.40
88 89 5.986741 GTGTGTGTACCAAATTAAAAAGGGG 59.013 40.000 0.00 0.00 0.00 4.79
89 90 5.986741 GGTGTGTGTACCAAATTAAAAAGGG 59.013 40.000 0.00 0.00 40.54 3.95
90 91 5.688176 CGGTGTGTGTACCAAATTAAAAAGG 59.312 40.000 0.00 0.00 40.89 3.11
91 92 6.496571 TCGGTGTGTGTACCAAATTAAAAAG 58.503 36.000 0.00 0.00 40.89 2.27
92 93 6.446781 TCGGTGTGTGTACCAAATTAAAAA 57.553 33.333 0.00 0.00 40.89 1.94
93 94 6.039493 ACATCGGTGTGTGTACCAAATTAAAA 59.961 34.615 0.00 0.00 40.89 1.52
94 95 5.531659 ACATCGGTGTGTGTACCAAATTAAA 59.468 36.000 0.00 0.00 40.89 1.52
95 96 5.064558 ACATCGGTGTGTGTACCAAATTAA 58.935 37.500 0.00 0.00 40.89 1.40
96 97 4.643463 ACATCGGTGTGTGTACCAAATTA 58.357 39.130 0.00 0.00 40.89 1.40
97 98 3.482436 ACATCGGTGTGTGTACCAAATT 58.518 40.909 0.00 0.00 40.89 1.82
98 99 3.134574 ACATCGGTGTGTGTACCAAAT 57.865 42.857 0.00 0.00 40.89 2.32
99 100 2.614520 CAACATCGGTGTGTGTACCAAA 59.385 45.455 0.00 0.00 40.89 3.28
100 101 2.158943 TCAACATCGGTGTGTGTACCAA 60.159 45.455 0.00 0.00 40.89 3.67
101 102 1.413077 TCAACATCGGTGTGTGTACCA 59.587 47.619 0.00 0.00 40.89 3.25
102 103 2.157834 TCAACATCGGTGTGTGTACC 57.842 50.000 0.00 0.00 38.92 3.34
103 104 3.122948 GTCATCAACATCGGTGTGTGTAC 59.877 47.826 0.00 0.00 38.92 2.90
104 105 3.243907 TGTCATCAACATCGGTGTGTGTA 60.244 43.478 0.00 0.00 38.92 2.90
105 106 2.143122 GTCATCAACATCGGTGTGTGT 58.857 47.619 0.00 0.00 38.92 3.72
106 107 2.142319 TGTCATCAACATCGGTGTGTG 58.858 47.619 0.00 3.26 38.92 3.82
107 108 2.542020 TGTCATCAACATCGGTGTGT 57.458 45.000 0.00 0.00 38.92 3.72
108 109 3.436359 TGATTGTCATCAACATCGGTGTG 59.564 43.478 0.00 0.00 38.92 3.82
109 110 3.673902 TGATTGTCATCAACATCGGTGT 58.326 40.909 0.00 0.00 36.41 4.16
110 111 4.683501 TTGATTGTCATCAACATCGGTG 57.316 40.909 0.00 0.00 43.32 4.94
118 119 8.193438 TGTACAACATGTTTTGATTGTCATCAA 58.807 29.630 8.77 0.00 45.96 2.57
119 120 7.710896 TGTACAACATGTTTTGATTGTCATCA 58.289 30.769 8.77 2.15 37.67 3.07
120 121 8.572828 TTGTACAACATGTTTTGATTGTCATC 57.427 30.769 8.77 0.00 36.67 2.92
122 123 9.676195 CTATTGTACAACATGTTTTGATTGTCA 57.324 29.630 11.22 1.92 36.67 3.58
123 124 9.891828 TCTATTGTACAACATGTTTTGATTGTC 57.108 29.630 11.22 0.00 36.67 3.18
158 159 9.965824 GAGAATTAGAAAGGTCAAATTGAAACA 57.034 29.630 0.00 0.00 0.00 2.83
159 160 9.965824 TGAGAATTAGAAAGGTCAAATTGAAAC 57.034 29.630 0.00 0.00 0.00 2.78
162 163 9.745018 AGATGAGAATTAGAAAGGTCAAATTGA 57.255 29.630 0.00 0.00 0.00 2.57
168 169 9.426534 TCATCTAGATGAGAATTAGAAAGGTCA 57.573 33.333 27.93 3.35 42.42 4.02
183 184 7.395772 AGACTTTGTCAGTTCTCATCTAGATGA 59.604 37.037 29.17 29.17 39.69 2.92
184 185 7.546358 AGACTTTGTCAGTTCTCATCTAGATG 58.454 38.462 24.32 24.32 35.01 2.90
185 186 7.716799 AGACTTTGTCAGTTCTCATCTAGAT 57.283 36.000 0.00 0.00 35.01 1.98
186 187 7.531857 AAGACTTTGTCAGTTCTCATCTAGA 57.468 36.000 0.00 0.00 35.01 2.43
187 188 9.515020 GATAAGACTTTGTCAGTTCTCATCTAG 57.485 37.037 0.00 0.00 35.01 2.43
188 189 9.249053 AGATAAGACTTTGTCAGTTCTCATCTA 57.751 33.333 0.00 0.00 35.01 1.98
189 190 8.133024 AGATAAGACTTTGTCAGTTCTCATCT 57.867 34.615 0.00 0.00 35.01 2.90
190 191 9.862371 TTAGATAAGACTTTGTCAGTTCTCATC 57.138 33.333 0.00 0.00 35.01 2.92
194 195 9.660180 GGAATTAGATAAGACTTTGTCAGTTCT 57.340 33.333 0.00 2.18 35.01 3.01
195 196 8.596380 CGGAATTAGATAAGACTTTGTCAGTTC 58.404 37.037 0.00 0.11 35.01 3.01
196 197 8.311836 TCGGAATTAGATAAGACTTTGTCAGTT 58.688 33.333 0.00 0.00 35.01 3.16
197 198 7.760340 GTCGGAATTAGATAAGACTTTGTCAGT 59.240 37.037 0.00 0.00 39.07 3.41
198 199 7.759886 TGTCGGAATTAGATAAGACTTTGTCAG 59.240 37.037 0.00 0.00 34.60 3.51
199 200 7.544566 GTGTCGGAATTAGATAAGACTTTGTCA 59.455 37.037 0.00 0.00 34.60 3.58
200 201 7.010275 GGTGTCGGAATTAGATAAGACTTTGTC 59.990 40.741 0.00 0.00 0.00 3.18
201 202 6.817140 GGTGTCGGAATTAGATAAGACTTTGT 59.183 38.462 0.00 0.00 0.00 2.83
202 203 7.042335 AGGTGTCGGAATTAGATAAGACTTTG 58.958 38.462 0.00 0.00 0.00 2.77
203 204 7.184067 AGGTGTCGGAATTAGATAAGACTTT 57.816 36.000 0.00 0.00 0.00 2.66
204 205 6.793505 AGGTGTCGGAATTAGATAAGACTT 57.206 37.500 0.00 0.00 0.00 3.01
205 206 6.793505 AAGGTGTCGGAATTAGATAAGACT 57.206 37.500 0.00 0.00 0.00 3.24
206 207 7.039882 TGAAAGGTGTCGGAATTAGATAAGAC 58.960 38.462 0.00 0.00 0.00 3.01
207 208 7.177832 TGAAAGGTGTCGGAATTAGATAAGA 57.822 36.000 0.00 0.00 0.00 2.10
208 209 7.843490 TTGAAAGGTGTCGGAATTAGATAAG 57.157 36.000 0.00 0.00 0.00 1.73
209 210 8.801882 AATTGAAAGGTGTCGGAATTAGATAA 57.198 30.769 0.00 0.00 0.00 1.75
210 211 8.801882 AAATTGAAAGGTGTCGGAATTAGATA 57.198 30.769 0.00 0.00 0.00 1.98
211 212 7.703058 AAATTGAAAGGTGTCGGAATTAGAT 57.297 32.000 0.00 0.00 0.00 1.98
212 213 8.673711 CATAAATTGAAAGGTGTCGGAATTAGA 58.326 33.333 0.00 0.00 0.00 2.10
213 214 8.458843 ACATAAATTGAAAGGTGTCGGAATTAG 58.541 33.333 0.00 0.00 0.00 1.73
214 215 8.240682 CACATAAATTGAAAGGTGTCGGAATTA 58.759 33.333 0.00 0.00 0.00 1.40
215 216 7.090173 CACATAAATTGAAAGGTGTCGGAATT 58.910 34.615 0.00 0.00 0.00 2.17
216 217 6.208599 ACACATAAATTGAAAGGTGTCGGAAT 59.791 34.615 0.00 0.00 34.68 3.01
217 218 5.533154 ACACATAAATTGAAAGGTGTCGGAA 59.467 36.000 0.00 0.00 34.68 4.30
218 219 5.067273 ACACATAAATTGAAAGGTGTCGGA 58.933 37.500 0.00 0.00 34.68 4.55
219 220 5.371115 ACACATAAATTGAAAGGTGTCGG 57.629 39.130 0.00 0.00 34.68 4.79
268 269 7.648142 AGAAGCATAACTCAATCGAACAAAAA 58.352 30.769 0.00 0.00 0.00 1.94
269 270 7.202016 AGAAGCATAACTCAATCGAACAAAA 57.798 32.000 0.00 0.00 0.00 2.44
270 271 6.801539 AGAAGCATAACTCAATCGAACAAA 57.198 33.333 0.00 0.00 0.00 2.83
271 272 6.650807 AGAAGAAGCATAACTCAATCGAACAA 59.349 34.615 0.00 0.00 0.00 2.83
272 273 6.166279 AGAAGAAGCATAACTCAATCGAACA 58.834 36.000 0.00 0.00 0.00 3.18
273 274 6.654793 AGAAGAAGCATAACTCAATCGAAC 57.345 37.500 0.00 0.00 0.00 3.95
274 275 7.672983 AAAGAAGAAGCATAACTCAATCGAA 57.327 32.000 0.00 0.00 0.00 3.71
275 276 7.672983 AAAAGAAGAAGCATAACTCAATCGA 57.327 32.000 0.00 0.00 0.00 3.59
310 311 9.203421 CGATGCATGAATATACACCTAAAGTTA 57.797 33.333 2.46 0.00 0.00 2.24
311 312 7.715249 ACGATGCATGAATATACACCTAAAGTT 59.285 33.333 2.46 0.00 0.00 2.66
312 313 7.217200 ACGATGCATGAATATACACCTAAAGT 58.783 34.615 2.46 0.00 0.00 2.66
313 314 7.658179 ACGATGCATGAATATACACCTAAAG 57.342 36.000 2.46 0.00 0.00 1.85
314 315 8.445275 AAACGATGCATGAATATACACCTAAA 57.555 30.769 2.46 0.00 0.00 1.85
315 316 8.984764 GTAAACGATGCATGAATATACACCTAA 58.015 33.333 2.46 0.00 0.00 2.69
316 317 7.327518 CGTAAACGATGCATGAATATACACCTA 59.672 37.037 2.46 0.00 43.02 3.08
317 318 6.145534 CGTAAACGATGCATGAATATACACCT 59.854 38.462 2.46 0.00 43.02 4.00
318 319 6.073980 ACGTAAACGATGCATGAATATACACC 60.074 38.462 2.46 0.00 43.02 4.16
319 320 6.873656 ACGTAAACGATGCATGAATATACAC 58.126 36.000 2.46 0.00 43.02 2.90
320 321 7.863877 ACTACGTAAACGATGCATGAATATACA 59.136 33.333 2.46 0.00 43.02 2.29
321 322 8.224169 ACTACGTAAACGATGCATGAATATAC 57.776 34.615 2.46 0.14 43.02 1.47
322 323 8.696175 CAACTACGTAAACGATGCATGAATATA 58.304 33.333 2.46 0.00 43.02 0.86
323 324 7.564128 CAACTACGTAAACGATGCATGAATAT 58.436 34.615 2.46 0.00 43.02 1.28
324 325 6.508880 GCAACTACGTAAACGATGCATGAATA 60.509 38.462 2.46 0.00 43.02 1.75
325 326 5.726688 GCAACTACGTAAACGATGCATGAAT 60.727 40.000 2.46 0.00 43.02 2.57
326 327 4.434989 GCAACTACGTAAACGATGCATGAA 60.435 41.667 2.46 0.00 43.02 2.57
327 328 3.061563 GCAACTACGTAAACGATGCATGA 59.938 43.478 2.46 0.00 43.02 3.07
328 329 3.181525 TGCAACTACGTAAACGATGCATG 60.182 43.478 2.46 0.00 43.02 4.06
329 330 2.997303 TGCAACTACGTAAACGATGCAT 59.003 40.909 18.25 0.00 43.02 3.96
330 331 2.405172 TGCAACTACGTAAACGATGCA 58.595 42.857 18.25 18.25 43.02 3.96
331 332 3.061563 TCATGCAACTACGTAAACGATGC 59.938 43.478 9.86 13.21 43.02 3.91
332 333 4.326278 ACTCATGCAACTACGTAAACGATG 59.674 41.667 9.86 3.99 43.02 3.84
333 334 4.491676 ACTCATGCAACTACGTAAACGAT 58.508 39.130 9.86 0.00 43.02 3.73
334 335 3.904571 ACTCATGCAACTACGTAAACGA 58.095 40.909 9.86 0.00 43.02 3.85
335 336 4.625135 GAACTCATGCAACTACGTAAACG 58.375 43.478 0.04 0.04 46.33 3.60
336 337 4.149396 ACGAACTCATGCAACTACGTAAAC 59.851 41.667 0.00 0.00 0.00 2.01
337 338 4.300803 ACGAACTCATGCAACTACGTAAA 58.699 39.130 0.00 0.00 0.00 2.01
338 339 3.904571 ACGAACTCATGCAACTACGTAA 58.095 40.909 0.00 0.00 0.00 3.18
339 340 3.564235 ACGAACTCATGCAACTACGTA 57.436 42.857 0.00 0.00 0.00 3.57
340 341 2.433868 ACGAACTCATGCAACTACGT 57.566 45.000 0.00 0.00 0.00 3.57
341 342 3.242944 CCATACGAACTCATGCAACTACG 59.757 47.826 0.00 0.00 0.00 3.51
342 343 4.181578 ACCATACGAACTCATGCAACTAC 58.818 43.478 0.00 0.00 0.00 2.73
343 344 4.465632 ACCATACGAACTCATGCAACTA 57.534 40.909 0.00 0.00 0.00 2.24
344 345 3.334583 ACCATACGAACTCATGCAACT 57.665 42.857 0.00 0.00 0.00 3.16
345 346 4.419522 AAACCATACGAACTCATGCAAC 57.580 40.909 0.00 0.00 0.00 4.17
346 347 4.277174 ACAAAACCATACGAACTCATGCAA 59.723 37.500 0.00 0.00 0.00 4.08
347 348 3.818210 ACAAAACCATACGAACTCATGCA 59.182 39.130 0.00 0.00 0.00 3.96
348 349 4.158384 CACAAAACCATACGAACTCATGC 58.842 43.478 0.00 0.00 0.00 4.06
349 350 4.722194 CCACAAAACCATACGAACTCATG 58.278 43.478 0.00 0.00 0.00 3.07
350 351 3.190535 GCCACAAAACCATACGAACTCAT 59.809 43.478 0.00 0.00 0.00 2.90
351 352 2.550606 GCCACAAAACCATACGAACTCA 59.449 45.455 0.00 0.00 0.00 3.41
352 353 2.550606 TGCCACAAAACCATACGAACTC 59.449 45.455 0.00 0.00 0.00 3.01
353 354 2.577700 TGCCACAAAACCATACGAACT 58.422 42.857 0.00 0.00 0.00 3.01
354 355 3.241701 CATGCCACAAAACCATACGAAC 58.758 45.455 0.00 0.00 0.00 3.95
355 356 2.352225 GCATGCCACAAAACCATACGAA 60.352 45.455 6.36 0.00 0.00 3.85
356 357 1.201181 GCATGCCACAAAACCATACGA 59.799 47.619 6.36 0.00 0.00 3.43
357 358 1.202114 AGCATGCCACAAAACCATACG 59.798 47.619 15.66 0.00 0.00 3.06
358 359 4.448537 TTAGCATGCCACAAAACCATAC 57.551 40.909 15.66 0.00 0.00 2.39
359 360 5.674052 ATTTAGCATGCCACAAAACCATA 57.326 34.783 15.66 0.00 0.00 2.74
360 361 4.556592 ATTTAGCATGCCACAAAACCAT 57.443 36.364 15.66 0.00 0.00 3.55
361 362 4.063689 CAATTTAGCATGCCACAAAACCA 58.936 39.130 15.66 0.00 0.00 3.67
362 363 3.120234 GCAATTTAGCATGCCACAAAACC 60.120 43.478 15.66 2.44 36.56 3.27
363 364 3.747529 AGCAATTTAGCATGCCACAAAAC 59.252 39.130 15.66 6.94 43.57 2.43
364 365 4.005487 AGCAATTTAGCATGCCACAAAA 57.995 36.364 15.66 10.55 43.57 2.44
365 366 3.681593 AGCAATTTAGCATGCCACAAA 57.318 38.095 15.66 12.77 43.57 2.83
366 367 4.797800 TTAGCAATTTAGCATGCCACAA 57.202 36.364 15.66 5.08 43.57 3.33
367 368 5.105432 TCAATTAGCAATTTAGCATGCCACA 60.105 36.000 15.66 0.00 43.57 4.17
368 369 5.350633 TCAATTAGCAATTTAGCATGCCAC 58.649 37.500 15.66 0.00 43.57 5.01
369 370 5.452216 CCTCAATTAGCAATTTAGCATGCCA 60.452 40.000 15.66 0.00 43.57 4.92
370 371 4.986659 CCTCAATTAGCAATTTAGCATGCC 59.013 41.667 15.66 0.00 43.57 4.40
371 372 5.461078 CACCTCAATTAGCAATTTAGCATGC 59.539 40.000 10.51 10.51 42.87 4.06
372 373 6.567050 ACACCTCAATTAGCAATTTAGCATG 58.433 36.000 0.00 0.00 36.85 4.06
373 374 6.183360 GGACACCTCAATTAGCAATTTAGCAT 60.183 38.462 0.00 0.00 36.85 3.79
374 375 5.125417 GGACACCTCAATTAGCAATTTAGCA 59.875 40.000 0.00 0.00 36.85 3.49
375 376 5.125417 TGGACACCTCAATTAGCAATTTAGC 59.875 40.000 0.00 0.00 0.00 3.09
376 377 6.757897 TGGACACCTCAATTAGCAATTTAG 57.242 37.500 0.00 0.00 0.00 1.85
377 378 7.716799 ATTGGACACCTCAATTAGCAATTTA 57.283 32.000 0.00 0.00 31.49 1.40
378 379 6.610075 ATTGGACACCTCAATTAGCAATTT 57.390 33.333 0.00 0.00 31.49 1.82
379 380 6.014327 ACAATTGGACACCTCAATTAGCAATT 60.014 34.615 10.83 0.00 41.28 2.32
380 381 5.481473 ACAATTGGACACCTCAATTAGCAAT 59.519 36.000 10.83 0.00 41.28 3.56
381 382 4.832266 ACAATTGGACACCTCAATTAGCAA 59.168 37.500 10.83 0.00 41.28 3.91
382 383 4.218200 CACAATTGGACACCTCAATTAGCA 59.782 41.667 10.83 0.00 41.28 3.49
383 384 4.458989 TCACAATTGGACACCTCAATTAGC 59.541 41.667 10.83 0.00 41.28 3.09
384 385 5.939883 TCTCACAATTGGACACCTCAATTAG 59.060 40.000 10.83 0.00 41.28 1.73
385 386 5.875224 TCTCACAATTGGACACCTCAATTA 58.125 37.500 10.83 0.00 41.28 1.40
386 387 4.728772 TCTCACAATTGGACACCTCAATT 58.271 39.130 10.83 0.00 43.21 2.32
387 388 4.371624 TCTCACAATTGGACACCTCAAT 57.628 40.909 10.83 0.00 36.50 2.57
388 389 3.855255 TCTCACAATTGGACACCTCAA 57.145 42.857 10.83 0.00 0.00 3.02
389 390 3.496692 CCTTCTCACAATTGGACACCTCA 60.497 47.826 10.83 0.00 0.00 3.86
390 391 3.077359 CCTTCTCACAATTGGACACCTC 58.923 50.000 10.83 0.00 0.00 3.85
391 392 2.711009 TCCTTCTCACAATTGGACACCT 59.289 45.455 10.83 0.00 0.00 4.00
392 393 3.140325 TCCTTCTCACAATTGGACACC 57.860 47.619 10.83 0.00 0.00 4.16
393 394 5.514274 TTTTCCTTCTCACAATTGGACAC 57.486 39.130 10.83 0.00 0.00 3.67
394 395 6.729690 AATTTTCCTTCTCACAATTGGACA 57.270 33.333 10.83 0.00 0.00 4.02
395 396 7.209475 TCAAATTTTCCTTCTCACAATTGGAC 58.791 34.615 10.83 0.00 0.00 4.02
396 397 7.287466 TCTCAAATTTTCCTTCTCACAATTGGA 59.713 33.333 10.83 3.55 0.00 3.53
397 398 7.383300 GTCTCAAATTTTCCTTCTCACAATTGG 59.617 37.037 10.83 0.00 0.00 3.16
398 399 7.113965 CGTCTCAAATTTTCCTTCTCACAATTG 59.886 37.037 3.24 3.24 0.00 2.32
399 400 7.141363 CGTCTCAAATTTTCCTTCTCACAATT 58.859 34.615 0.00 0.00 0.00 2.32
400 401 6.263168 ACGTCTCAAATTTTCCTTCTCACAAT 59.737 34.615 0.00 0.00 0.00 2.71
401 402 5.588648 ACGTCTCAAATTTTCCTTCTCACAA 59.411 36.000 0.00 0.00 0.00 3.33
402 403 5.007626 CACGTCTCAAATTTTCCTTCTCACA 59.992 40.000 0.00 0.00 0.00 3.58
403 404 5.236478 TCACGTCTCAAATTTTCCTTCTCAC 59.764 40.000 0.00 0.00 0.00 3.51
404 405 5.236478 GTCACGTCTCAAATTTTCCTTCTCA 59.764 40.000 0.00 0.00 0.00 3.27
405 406 5.334182 GGTCACGTCTCAAATTTTCCTTCTC 60.334 44.000 0.00 0.00 0.00 2.87
406 407 4.515567 GGTCACGTCTCAAATTTTCCTTCT 59.484 41.667 0.00 0.00 0.00 2.85
407 408 4.274950 TGGTCACGTCTCAAATTTTCCTTC 59.725 41.667 0.00 0.00 0.00 3.46
408 409 4.204012 TGGTCACGTCTCAAATTTTCCTT 58.796 39.130 0.00 0.00 0.00 3.36
409 410 3.815809 TGGTCACGTCTCAAATTTTCCT 58.184 40.909 0.00 0.00 0.00 3.36
410 411 4.561735 TTGGTCACGTCTCAAATTTTCC 57.438 40.909 0.00 0.00 0.00 3.13
411 412 5.757886 TGATTGGTCACGTCTCAAATTTTC 58.242 37.500 0.00 0.00 0.00 2.29
412 413 5.299279 ACTGATTGGTCACGTCTCAAATTTT 59.701 36.000 0.00 0.00 0.00 1.82
413 414 4.821805 ACTGATTGGTCACGTCTCAAATTT 59.178 37.500 0.00 0.00 0.00 1.82
414 415 4.214119 CACTGATTGGTCACGTCTCAAATT 59.786 41.667 0.00 0.00 0.00 1.82
415 416 3.748048 CACTGATTGGTCACGTCTCAAAT 59.252 43.478 0.00 0.00 0.00 2.32
416 417 3.130633 CACTGATTGGTCACGTCTCAAA 58.869 45.455 0.00 0.00 0.00 2.69
417 418 2.754472 CACTGATTGGTCACGTCTCAA 58.246 47.619 0.00 0.00 0.00 3.02
418 419 1.605457 GCACTGATTGGTCACGTCTCA 60.605 52.381 0.00 0.00 0.00 3.27
419 420 1.071605 GCACTGATTGGTCACGTCTC 58.928 55.000 0.00 0.00 0.00 3.36
420 421 0.320771 GGCACTGATTGGTCACGTCT 60.321 55.000 0.00 0.00 0.00 4.18
421 422 1.298859 GGGCACTGATTGGTCACGTC 61.299 60.000 0.00 0.00 0.00 4.34
422 423 1.302511 GGGCACTGATTGGTCACGT 60.303 57.895 0.00 0.00 0.00 4.49
423 424 2.390599 CGGGCACTGATTGGTCACG 61.391 63.158 0.00 0.00 36.31 4.35
424 425 2.690778 GCGGGCACTGATTGGTCAC 61.691 63.158 0.00 0.00 36.31 3.67
425 426 2.359850 GCGGGCACTGATTGGTCA 60.360 61.111 0.00 0.00 36.31 4.02
426 427 2.359850 TGCGGGCACTGATTGGTC 60.360 61.111 0.00 0.00 36.31 4.02
427 428 2.202236 ATCTGCGGGCACTGATTGGT 62.202 55.000 0.00 0.00 36.31 3.67
428 429 1.452651 ATCTGCGGGCACTGATTGG 60.453 57.895 0.00 0.00 36.31 3.16
429 430 1.725665 CATCTGCGGGCACTGATTG 59.274 57.895 0.00 0.00 36.31 2.67
430 431 2.117156 GCATCTGCGGGCACTGATT 61.117 57.895 0.00 0.00 36.31 2.57
431 432 2.515523 GCATCTGCGGGCACTGAT 60.516 61.111 0.00 0.00 36.31 2.90
450 451 2.203015 CCGTAGACATTGCCCGGG 60.203 66.667 19.09 19.09 35.11 5.73
463 464 2.751688 GGCCCTCAAACACCCGTA 59.248 61.111 0.00 0.00 0.00 4.02
464 465 4.636435 CGGCCCTCAAACACCCGT 62.636 66.667 0.00 0.00 34.56 5.28
487 488 1.664151 GCATCTACAACCGTACTTGGC 59.336 52.381 0.55 0.00 0.00 4.52
559 593 8.783660 ATATTCCTACATAGTCTTCCAGAACA 57.216 34.615 0.00 0.00 0.00 3.18
591 625 1.375523 CGGACCAAGTACACTGCCC 60.376 63.158 0.00 0.00 0.00 5.36
714 748 6.453926 ACTTTCTTTTGGCTTTACGGTAAA 57.546 33.333 12.40 12.40 0.00 2.01
715 749 6.453926 AACTTTCTTTTGGCTTTACGGTAA 57.546 33.333 0.00 0.00 0.00 2.85
716 750 5.277442 CGAACTTTCTTTTGGCTTTACGGTA 60.277 40.000 0.00 0.00 0.00 4.02
718 752 3.972502 CGAACTTTCTTTTGGCTTTACGG 59.027 43.478 0.00 0.00 0.00 4.02
719 753 4.594136 ACGAACTTTCTTTTGGCTTTACG 58.406 39.130 0.00 0.00 0.00 3.18
759 793 3.543680 TCCATGAAGAAATCGTCTCCC 57.456 47.619 0.00 0.00 34.56 4.30
827 899 2.608546 CAGGACTACTAGTCGTCGGAAG 59.391 54.545 18.30 3.60 45.96 3.46
828 900 2.625737 CAGGACTACTAGTCGTCGGAA 58.374 52.381 18.30 0.00 45.96 4.30
829 901 1.134580 CCAGGACTACTAGTCGTCGGA 60.135 57.143 18.30 0.00 45.96 4.55
830 902 1.134580 TCCAGGACTACTAGTCGTCGG 60.135 57.143 18.30 15.23 45.96 4.79
831 903 2.203401 CTCCAGGACTACTAGTCGTCG 58.797 57.143 18.30 8.06 45.96 5.12
839 911 1.958288 ACAATGGCTCCAGGACTACT 58.042 50.000 0.00 0.00 0.00 2.57
880 958 4.878397 AGCAAGCACTTTGATAGATGTACC 59.122 41.667 0.00 0.00 39.21 3.34
902 980 2.392821 CAAGCTAGCTGCACGATCTAG 58.607 52.381 20.16 0.00 45.94 2.43
1106 1184 1.380302 GCTTTCCAGGCAAGGAGGA 59.620 57.895 0.58 0.00 39.25 3.71
1136 1214 0.991146 TTGTAGCTGGCTTGGATGGA 59.009 50.000 0.00 0.00 0.00 3.41
1145 1223 1.152881 CCCCAGGATTGTAGCTGGC 60.153 63.158 0.00 0.00 35.76 4.85
1266 1353 4.667935 TCCCCTCCGAGCCCCAAA 62.668 66.667 0.00 0.00 0.00 3.28
1288 1375 2.423538 GCACAGTGAAGTTGAGGTTGTT 59.576 45.455 4.15 0.00 0.00 2.83
1320 1407 2.941720 GTTGGAGAGTTGGATGCTCATC 59.058 50.000 1.35 1.35 35.55 2.92
1503 1590 0.839946 CTAGTTCAGTGGGGATGGGG 59.160 60.000 0.00 0.00 0.00 4.96
1546 1635 5.774690 TGAGGCTGTTGTTGGAAAAATCTAT 59.225 36.000 0.00 0.00 0.00 1.98
1602 1691 8.041323 CCAAGGTACAAGATTGTGATACTAGTT 58.959 37.037 0.00 0.00 42.31 2.24
1678 1767 7.873719 TCCAAAGAGACAACTGATTTAAACA 57.126 32.000 0.00 0.00 0.00 2.83
1699 1788 8.986929 ATGGAACCAATTAATTTGTTTTTCCA 57.013 26.923 19.09 19.09 43.65 3.53
1954 2043 9.918630 CAAATATTCAAGATTTGACAGGTTTCT 57.081 29.630 11.39 0.00 43.85 2.52
1956 2045 8.869109 TCCAAATATTCAAGATTTGACAGGTTT 58.131 29.630 17.36 0.00 43.85 3.27
2080 2169 6.656902 TGTAACCTAGTTCTCGAGGAAGATA 58.343 40.000 13.56 0.00 38.48 1.98
2166 2255 7.095187 CGAGTGAGCTTAGTTAAACTTCCAAAT 60.095 37.037 0.00 0.00 0.00 2.32
2388 2477 8.306038 TCCAAATATTCAAGATTTGACAGGTTG 58.694 33.333 17.36 1.20 43.85 3.77
2415 2504 4.582656 CCCATGAGTTGGTTGTTGTTAAGA 59.417 41.667 0.00 0.00 44.83 2.10
2441 2530 7.289782 TCAAATTTACAAAGATATGGGGGATGG 59.710 37.037 0.00 0.00 0.00 3.51
2486 2575 5.431765 CATAGAAGTGGTTAGCATCAAGGT 58.568 41.667 0.00 0.00 0.00 3.50
2515 2604 5.069251 CCATGTAACCTAGTTCTCGAGGAAT 59.931 44.000 13.56 5.57 38.48 3.01
2522 2611 6.879400 AGATTCACCATGTAACCTAGTTCTC 58.121 40.000 0.00 0.00 0.00 2.87
2569 2658 4.477249 GGAATGGATCCCATGAGATTGTT 58.523 43.478 9.90 0.00 44.40 2.83
2570 2659 4.109877 GGAATGGATCCCATGAGATTGT 57.890 45.455 9.90 0.00 44.40 2.71
2583 2672 4.898014 TCCAAAGGTATTGGGAATGGAT 57.102 40.909 7.33 0.00 35.41 3.41
2635 2868 4.761975 TGTCCGGTTAACTGATTACCATC 58.238 43.478 16.27 0.00 0.00 3.51
2636 2869 4.829872 TGTCCGGTTAACTGATTACCAT 57.170 40.909 16.27 0.00 0.00 3.55
2637 2870 4.829872 ATGTCCGGTTAACTGATTACCA 57.170 40.909 16.27 5.20 0.00 3.25
2686 3207 7.559590 TGCTAAGAGCCAATTCTTCTAAATC 57.440 36.000 0.00 0.00 41.51 2.17
2702 3223 5.064452 CCAGTGAGCTTGTTATTGCTAAGAG 59.936 44.000 0.00 0.00 39.91 2.85
3256 4929 3.812053 AGATGCAGCTGGAATAATCGTTC 59.188 43.478 13.45 2.19 0.00 3.95
3642 5315 5.710099 TGGTCCTTCCAATTCATTGTAAGAC 59.290 40.000 6.46 4.39 44.12 3.01
4014 5933 2.569404 GACAGATCCATATCCCCCAGTC 59.431 54.545 0.00 0.00 31.98 3.51
4092 6011 6.527023 ACTCGTTCACACAATAGTTATCTTCG 59.473 38.462 0.00 0.00 0.00 3.79
4099 6018 4.448210 ACCAACTCGTTCACACAATAGTT 58.552 39.130 0.00 0.00 0.00 2.24
4181 6100 5.222007 CCTTGGCTAGAGGAACAATATCCAT 60.222 44.000 0.00 0.00 42.27 3.41
4761 6715 6.070653 AGCACACATCATTATTTTTGGTGGAT 60.071 34.615 0.00 0.00 29.18 3.41
4906 6860 1.205820 CGTCACTAGCACGTCGTGA 59.794 57.895 28.83 8.08 35.23 4.35
5261 7227 8.406297 GTCCATCTTTCAAAGTCCCATTATAAC 58.594 37.037 0.00 0.00 0.00 1.89
5272 7238 6.205658 GCAAGAACTAGTCCATCTTTCAAAGT 59.794 38.462 5.70 0.00 31.26 2.66
5283 7249 0.606604 GTCGGGCAAGAACTAGTCCA 59.393 55.000 0.00 0.00 0.00 4.02
5285 7251 1.077089 GCGTCGGGCAAGAACTAGTC 61.077 60.000 0.00 0.00 42.87 2.59
5305 7271 3.322828 ACCCGCTATATAAACGTGTCCAT 59.677 43.478 0.00 0.00 0.00 3.41
5339 7305 0.543410 TAAACACCTCTCCGGCTGGA 60.543 55.000 15.16 15.16 43.88 3.86
5368 7334 2.660552 CACGTTCGTTCCTGCGGT 60.661 61.111 0.00 0.00 0.00 5.68
5371 7337 2.935955 CCACACGTTCGTTCCTGC 59.064 61.111 0.00 0.00 0.00 4.85
5395 7361 2.359967 GGAACCTACTCTGGCGCCT 61.360 63.158 29.70 9.99 0.00 5.52
5463 7430 4.681978 GAGAGCACCGCCCGTTGT 62.682 66.667 0.00 0.00 0.00 3.32
5497 7464 3.942351 CTCACTGGAGCCAACATCA 57.058 52.632 0.00 0.00 33.67 3.07
5532 7499 1.081242 CTGCCCACGTTCATGTTGC 60.081 57.895 0.00 0.00 0.00 4.17
5535 7502 1.968017 CAGCTGCCCACGTTCATGT 60.968 57.895 0.00 0.00 0.00 3.21
5808 8115 2.932622 GCACATGAACCAGATGACGACT 60.933 50.000 0.00 0.00 0.00 4.18
5898 8207 8.086522 GGGAACTTATGGAAAGGTTTCTTAAAC 58.913 37.037 2.60 0.00 40.65 2.01
5919 8228 0.661020 CCGGCGAATTACATGGGAAC 59.339 55.000 9.30 0.00 0.00 3.62
5925 8234 7.966246 TTACATATTTACCGGCGAATTACAT 57.034 32.000 9.30 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.