Multiple sequence alignment - TraesCS2D01G032200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G032200 chr2D 100.000 4133 0 0 1 4133 12730120 12725988 0.000000e+00 7633
1 TraesCS2D01G032200 chr2D 97.700 1739 38 2 110 1847 649294990 649296727 0.000000e+00 2988
2 TraesCS2D01G032200 chr6D 98.929 2054 22 0 1842 3895 6826510 6828563 0.000000e+00 3672
3 TraesCS2D01G032200 chr6D 98.811 1850 17 3 1 1848 6824615 6826461 0.000000e+00 3290
4 TraesCS2D01G032200 chr6D 90.411 365 29 5 1842 2204 360749814 360749454 3.740000e-130 475
5 TraesCS2D01G032200 chr5A 95.640 2064 71 8 1842 3895 553297173 553295119 0.000000e+00 3295
6 TraesCS2D01G032200 chr5A 96.114 1853 63 5 2 1848 553299071 553297222 0.000000e+00 3014
7 TraesCS2D01G032200 chr7A 94.466 2060 82 12 1842 3895 527908181 527910214 0.000000e+00 3144
8 TraesCS2D01G032200 chr7A 97.277 1836 42 4 19 1848 270889776 270887943 0.000000e+00 3107
9 TraesCS2D01G032200 chr7A 96.374 1848 63 4 1 1847 527906288 527908132 0.000000e+00 3038
10 TraesCS2D01G032200 chr7A 95.172 1740 63 11 2167 3895 270883623 270881894 0.000000e+00 2728
11 TraesCS2D01G032200 chr7A 86.351 1839 209 25 24 1848 461484268 461482458 0.000000e+00 1967
12 TraesCS2D01G032200 chr7A 97.235 434 12 0 1415 1848 734698272 734698705 0.000000e+00 736
13 TraesCS2D01G032200 chr7A 96.341 328 12 0 1842 2169 270887894 270887567 1.310000e-149 540
14 TraesCS2D01G032200 chr3D 92.576 1832 116 10 27 1848 573207412 573209233 0.000000e+00 2612
15 TraesCS2D01G032200 chr3D 89.557 1829 142 22 1862 3662 573209331 573211138 0.000000e+00 2274
16 TraesCS2D01G032200 chr2A 89.209 1770 164 22 88 1848 171836744 171838495 0.000000e+00 2185
17 TraesCS2D01G032200 chr2B 89.096 1770 165 23 88 1848 93122633 93124383 0.000000e+00 2174
18 TraesCS2D01G032200 chr2B 85.318 1478 156 26 2440 3874 726916038 726914579 0.000000e+00 1471
19 TraesCS2D01G032200 chr3A 85.227 1496 167 29 2440 3895 352091206 352092687 0.000000e+00 1489
20 TraesCS2D01G032200 chr3A 88.782 1043 82 18 2099 3119 707859050 707860079 0.000000e+00 1245
21 TraesCS2D01G032200 chr3A 85.740 1122 140 13 2776 3895 554370181 554371284 0.000000e+00 1168
22 TraesCS2D01G032200 chr3A 83.880 1036 121 18 2856 3890 163166438 163165448 0.000000e+00 946
23 TraesCS2D01G032200 chr7D 83.451 991 126 17 2528 3490 608289855 608288875 0.000000e+00 887
24 TraesCS2D01G032200 chr7D 90.068 443 43 1 3455 3897 346625190 346624749 1.290000e-159 573
25 TraesCS2D01G032200 chr7D 89.863 365 31 5 1842 2204 346626592 346626232 8.090000e-127 464
26 TraesCS2D01G032200 chr7D 89.863 365 31 5 1842 2204 608290269 608289909 8.090000e-127 464
27 TraesCS2D01G032200 chr1D 90.137 365 30 5 1842 2204 485424456 485424096 1.740000e-128 470
28 TraesCS2D01G032200 chrUn 92.670 191 13 1 3943 4133 18132470 18132659 1.460000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G032200 chr2D 12725988 12730120 4132 True 7633.0 7633 100.000000 1 4133 1 chr2D.!!$R1 4132
1 TraesCS2D01G032200 chr2D 649294990 649296727 1737 False 2988.0 2988 97.700000 110 1847 1 chr2D.!!$F1 1737
2 TraesCS2D01G032200 chr6D 6824615 6828563 3948 False 3481.0 3672 98.870000 1 3895 2 chr6D.!!$F1 3894
3 TraesCS2D01G032200 chr5A 553295119 553299071 3952 True 3154.5 3295 95.877000 2 3895 2 chr5A.!!$R1 3893
4 TraesCS2D01G032200 chr7A 527906288 527910214 3926 False 3091.0 3144 95.420000 1 3895 2 chr7A.!!$F2 3894
5 TraesCS2D01G032200 chr7A 270881894 270889776 7882 True 2125.0 3107 96.263333 19 3895 3 chr7A.!!$R2 3876
6 TraesCS2D01G032200 chr7A 461482458 461484268 1810 True 1967.0 1967 86.351000 24 1848 1 chr7A.!!$R1 1824
7 TraesCS2D01G032200 chr3D 573207412 573211138 3726 False 2443.0 2612 91.066500 27 3662 2 chr3D.!!$F1 3635
8 TraesCS2D01G032200 chr2A 171836744 171838495 1751 False 2185.0 2185 89.209000 88 1848 1 chr2A.!!$F1 1760
9 TraesCS2D01G032200 chr2B 93122633 93124383 1750 False 2174.0 2174 89.096000 88 1848 1 chr2B.!!$F1 1760
10 TraesCS2D01G032200 chr2B 726914579 726916038 1459 True 1471.0 1471 85.318000 2440 3874 1 chr2B.!!$R1 1434
11 TraesCS2D01G032200 chr3A 352091206 352092687 1481 False 1489.0 1489 85.227000 2440 3895 1 chr3A.!!$F1 1455
12 TraesCS2D01G032200 chr3A 707859050 707860079 1029 False 1245.0 1245 88.782000 2099 3119 1 chr3A.!!$F3 1020
13 TraesCS2D01G032200 chr3A 554370181 554371284 1103 False 1168.0 1168 85.740000 2776 3895 1 chr3A.!!$F2 1119
14 TraesCS2D01G032200 chr3A 163165448 163166438 990 True 946.0 946 83.880000 2856 3890 1 chr3A.!!$R1 1034
15 TraesCS2D01G032200 chr7D 608288875 608290269 1394 True 675.5 887 86.657000 1842 3490 2 chr7D.!!$R2 1648
16 TraesCS2D01G032200 chr7D 346624749 346626592 1843 True 518.5 573 89.965500 1842 3897 2 chr7D.!!$R1 2055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.560688 AAACTGGTGGATGGGTGGTT 59.439 50.000 0.0 0.0 0.00 3.67 F
948 969 5.574055 CCATCATGACAACTATTTGCACAAC 59.426 40.000 0.0 0.0 36.00 3.32 F
1678 1711 0.041312 GTGTGTGCAAGTTAGGTGCG 60.041 55.000 0.0 0.0 45.27 5.34 F
2309 6454 6.821665 ACTTTACAACTTGAGCTAAACTGACA 59.178 34.615 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1711 5.726793 ACTACTATCCATGACCCATAATCCC 59.273 44.000 0.00 0.0 0.00 3.85 R
2251 6395 4.857037 CAGATGTGCATGTGATCTTGTTTG 59.143 41.667 3.56 0.0 34.35 2.93 R
2608 6766 5.300286 AGCAGTGTTTAGATTTTGCAGTCTT 59.700 36.000 4.06 0.0 34.17 3.01 R
4078 8353 0.248012 TGGCGTGCCTTATCGAAGAA 59.752 50.000 12.84 0.0 37.19 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 0.560688 AAACTGGTGGATGGGTGGTT 59.439 50.000 0.00 0.00 0.00 3.67
435 439 6.108015 GGCAGCCATCAAAAGATTAATGAAA 58.892 36.000 6.55 0.00 0.00 2.69
948 969 5.574055 CCATCATGACAACTATTTGCACAAC 59.426 40.000 0.00 0.00 36.00 3.32
1678 1711 0.041312 GTGTGTGCAAGTTAGGTGCG 60.041 55.000 0.00 0.00 45.27 5.34
2309 6454 6.821665 ACTTTACAACTTGAGCTAAACTGACA 59.178 34.615 0.00 0.00 0.00 3.58
2490 6638 7.540474 TGGTGTAAATTTTATGTGGGCTTTA 57.460 32.000 0.00 0.00 0.00 1.85
2608 6766 2.831685 ACTTGTTCGGCTGTGTCATA 57.168 45.000 0.00 0.00 0.00 2.15
2793 6991 2.275318 GCTAGCAGCTTACCTGTCAAG 58.725 52.381 10.63 0.00 43.71 3.02
3573 7847 5.952347 AACTAAGTCCTATGGGTCGAATT 57.048 39.130 0.00 0.00 0.00 2.17
3911 8186 9.190317 TCTAGTAGTGTGAAGACATATGATTGT 57.810 33.333 10.38 0.00 33.63 2.71
3912 8187 9.457110 CTAGTAGTGTGAAGACATATGATTGTC 57.543 37.037 10.38 0.00 45.15 3.18
3913 8188 7.840931 AGTAGTGTGAAGACATATGATTGTCA 58.159 34.615 10.38 4.56 46.81 3.58
3914 8189 8.481314 AGTAGTGTGAAGACATATGATTGTCAT 58.519 33.333 10.38 0.00 46.81 3.06
3915 8190 9.102757 GTAGTGTGAAGACATATGATTGTCATT 57.897 33.333 10.38 5.19 46.81 2.57
3917 8192 9.842775 AGTGTGAAGACATATGATTGTCATTAT 57.157 29.630 10.38 0.00 46.81 1.28
3918 8193 9.874215 GTGTGAAGACATATGATTGTCATTATG 57.126 33.333 10.38 3.70 46.81 1.90
3919 8194 9.617523 TGTGAAGACATATGATTGTCATTATGT 57.382 29.630 10.38 6.34 46.81 2.29
3926 8201 9.729281 ACATATGATTGTCATTATGTAGATGCA 57.271 29.630 10.38 0.00 38.26 3.96
3928 8203 6.549912 TGATTGTCATTATGTAGATGCAGC 57.450 37.500 0.00 0.00 0.00 5.25
3929 8204 5.471116 TGATTGTCATTATGTAGATGCAGCC 59.529 40.000 0.00 0.00 0.00 4.85
3930 8205 4.420522 TGTCATTATGTAGATGCAGCCA 57.579 40.909 0.00 0.00 0.00 4.75
3931 8206 4.779696 TGTCATTATGTAGATGCAGCCAA 58.220 39.130 0.00 0.00 0.00 4.52
3932 8207 5.192176 TGTCATTATGTAGATGCAGCCAAA 58.808 37.500 0.00 0.00 0.00 3.28
3933 8208 5.297527 TGTCATTATGTAGATGCAGCCAAAG 59.702 40.000 0.00 0.00 0.00 2.77
3934 8209 4.823442 TCATTATGTAGATGCAGCCAAAGG 59.177 41.667 0.00 0.00 0.00 3.11
3935 8210 4.502105 TTATGTAGATGCAGCCAAAGGA 57.498 40.909 0.00 0.00 0.00 3.36
3936 8211 2.408271 TGTAGATGCAGCCAAAGGAG 57.592 50.000 0.00 0.00 0.00 3.69
3937 8212 1.630369 TGTAGATGCAGCCAAAGGAGT 59.370 47.619 0.00 0.00 0.00 3.85
3938 8213 2.284190 GTAGATGCAGCCAAAGGAGTC 58.716 52.381 0.00 0.00 0.00 3.36
3939 8214 0.694771 AGATGCAGCCAAAGGAGTCA 59.305 50.000 0.00 0.00 0.00 3.41
3940 8215 1.074405 AGATGCAGCCAAAGGAGTCAA 59.926 47.619 0.00 0.00 0.00 3.18
3941 8216 2.097825 GATGCAGCCAAAGGAGTCAAT 58.902 47.619 0.00 0.00 0.00 2.57
3942 8217 1.250328 TGCAGCCAAAGGAGTCAATG 58.750 50.000 0.00 0.00 0.00 2.82
3943 8218 0.529378 GCAGCCAAAGGAGTCAATGG 59.471 55.000 4.23 4.23 36.00 3.16
3944 8219 1.887956 GCAGCCAAAGGAGTCAATGGA 60.888 52.381 11.14 0.00 34.82 3.41
3945 8220 2.089980 CAGCCAAAGGAGTCAATGGAG 58.910 52.381 11.14 1.15 34.82 3.86
3946 8221 0.813821 GCCAAAGGAGTCAATGGAGC 59.186 55.000 11.14 0.00 34.82 4.70
3947 8222 1.887956 GCCAAAGGAGTCAATGGAGCA 60.888 52.381 11.14 0.00 34.82 4.26
3948 8223 2.089980 CCAAAGGAGTCAATGGAGCAG 58.910 52.381 2.75 0.00 34.82 4.24
3949 8224 2.290514 CCAAAGGAGTCAATGGAGCAGA 60.291 50.000 2.75 0.00 34.82 4.26
3950 8225 3.618351 CAAAGGAGTCAATGGAGCAGAT 58.382 45.455 0.00 0.00 0.00 2.90
3951 8226 3.557228 AAGGAGTCAATGGAGCAGATC 57.443 47.619 0.00 0.00 0.00 2.75
3952 8227 2.475155 AGGAGTCAATGGAGCAGATCA 58.525 47.619 0.00 0.00 0.00 2.92
3953 8228 2.842496 AGGAGTCAATGGAGCAGATCAA 59.158 45.455 0.00 0.00 0.00 2.57
3954 8229 2.941720 GGAGTCAATGGAGCAGATCAAC 59.058 50.000 0.00 0.00 0.00 3.18
3955 8230 2.606725 GAGTCAATGGAGCAGATCAACG 59.393 50.000 0.00 0.00 0.00 4.10
3956 8231 1.063174 GTCAATGGAGCAGATCAACGC 59.937 52.381 0.00 0.00 0.00 4.84
3957 8232 1.065926 TCAATGGAGCAGATCAACGCT 60.066 47.619 4.19 4.19 42.42 5.07
3958 8233 1.741706 CAATGGAGCAGATCAACGCTT 59.258 47.619 5.86 0.00 38.99 4.68
3959 8234 1.376543 ATGGAGCAGATCAACGCTTG 58.623 50.000 5.86 0.00 38.99 4.01
3960 8235 0.674581 TGGAGCAGATCAACGCTTGG 60.675 55.000 5.86 0.00 38.99 3.61
3961 8236 1.372087 GGAGCAGATCAACGCTTGGG 61.372 60.000 5.86 0.00 38.99 4.12
3962 8237 0.674895 GAGCAGATCAACGCTTGGGT 60.675 55.000 5.86 0.00 38.99 4.51
3963 8238 0.957395 AGCAGATCAACGCTTGGGTG 60.957 55.000 0.00 0.00 33.81 4.61
3964 8239 1.926511 GCAGATCAACGCTTGGGTGG 61.927 60.000 0.00 0.00 0.00 4.61
3965 8240 0.606401 CAGATCAACGCTTGGGTGGT 60.606 55.000 0.00 0.00 0.00 4.16
3966 8241 0.606401 AGATCAACGCTTGGGTGGTG 60.606 55.000 0.00 0.00 41.58 4.17
3967 8242 1.586154 GATCAACGCTTGGGTGGTGG 61.586 60.000 0.00 0.00 40.69 4.61
3968 8243 3.977244 CAACGCTTGGGTGGTGGC 61.977 66.667 0.00 0.00 37.04 5.01
3972 8247 3.977244 GCTTGGGTGGTGGCGTTG 61.977 66.667 0.00 0.00 0.00 4.10
3973 8248 2.203280 CTTGGGTGGTGGCGTTGA 60.203 61.111 0.00 0.00 0.00 3.18
3974 8249 2.517402 TTGGGTGGTGGCGTTGAC 60.517 61.111 0.00 0.00 0.00 3.18
3975 8250 4.920112 TGGGTGGTGGCGTTGACG 62.920 66.667 0.00 0.00 43.27 4.35
3976 8251 4.612412 GGGTGGTGGCGTTGACGA 62.612 66.667 7.85 0.00 43.02 4.20
3977 8252 2.589442 GGTGGTGGCGTTGACGAA 60.589 61.111 7.85 0.00 43.02 3.85
3978 8253 2.629763 GTGGTGGCGTTGACGAAC 59.370 61.111 7.85 4.65 43.02 3.95
3986 8261 4.278956 GTTGACGAACGGCCTCAT 57.721 55.556 0.00 0.00 0.00 2.90
3987 8262 2.079049 GTTGACGAACGGCCTCATC 58.921 57.895 0.00 0.00 0.00 2.92
3988 8263 1.079405 TTGACGAACGGCCTCATCC 60.079 57.895 0.00 0.00 0.00 3.51
3989 8264 2.202892 GACGAACGGCCTCATCCC 60.203 66.667 0.00 0.00 0.00 3.85
3990 8265 3.735037 GACGAACGGCCTCATCCCC 62.735 68.421 0.00 0.00 0.00 4.81
3991 8266 3.470888 CGAACGGCCTCATCCCCT 61.471 66.667 0.00 0.00 0.00 4.79
3992 8267 2.506472 GAACGGCCTCATCCCCTC 59.494 66.667 0.00 0.00 0.00 4.30
3993 8268 3.090532 AACGGCCTCATCCCCTCC 61.091 66.667 0.00 0.00 0.00 4.30
3994 8269 3.943137 AACGGCCTCATCCCCTCCA 62.943 63.158 0.00 0.00 0.00 3.86
3995 8270 2.851102 CGGCCTCATCCCCTCCAT 60.851 66.667 0.00 0.00 0.00 3.41
3996 8271 2.888447 CGGCCTCATCCCCTCCATC 61.888 68.421 0.00 0.00 0.00 3.51
3997 8272 2.746359 GCCTCATCCCCTCCATCG 59.254 66.667 0.00 0.00 0.00 3.84
3998 8273 2.143419 GCCTCATCCCCTCCATCGT 61.143 63.158 0.00 0.00 0.00 3.73
3999 8274 2.053618 CCTCATCCCCTCCATCGTC 58.946 63.158 0.00 0.00 0.00 4.20
4000 8275 1.662608 CTCATCCCCTCCATCGTCG 59.337 63.158 0.00 0.00 0.00 5.12
4001 8276 0.823769 CTCATCCCCTCCATCGTCGA 60.824 60.000 0.00 0.00 0.00 4.20
4002 8277 1.107538 TCATCCCCTCCATCGTCGAC 61.108 60.000 5.18 5.18 0.00 4.20
4003 8278 2.194212 ATCCCCTCCATCGTCGACG 61.194 63.158 31.30 31.30 41.45 5.12
4004 8279 3.900892 CCCCTCCATCGTCGACGG 61.901 72.222 35.05 21.08 40.29 4.79
4005 8280 2.827190 CCCTCCATCGTCGACGGA 60.827 66.667 35.05 23.58 40.29 4.69
4006 8281 2.716244 CCTCCATCGTCGACGGAG 59.284 66.667 35.05 29.90 45.02 4.63
4008 8283 3.809423 TCCATCGTCGACGGAGAG 58.191 61.111 35.05 21.64 40.29 3.20
4009 8284 1.818363 TCCATCGTCGACGGAGAGG 60.818 63.158 35.05 28.19 40.29 3.69
4010 8285 2.024871 CATCGTCGACGGAGAGGC 59.975 66.667 35.05 0.00 40.29 4.70
4042 8317 3.680786 CCGACCTGGTGCTCGTCA 61.681 66.667 2.82 0.00 0.00 4.35
4043 8318 2.338620 CGACCTGGTGCTCGTCAA 59.661 61.111 2.82 0.00 0.00 3.18
4044 8319 1.079819 CGACCTGGTGCTCGTCAAT 60.080 57.895 2.82 0.00 0.00 2.57
4045 8320 1.354337 CGACCTGGTGCTCGTCAATG 61.354 60.000 2.82 0.00 0.00 2.82
4046 8321 1.639298 GACCTGGTGCTCGTCAATGC 61.639 60.000 2.82 0.00 0.00 3.56
4047 8322 2.401766 CCTGGTGCTCGTCAATGCC 61.402 63.158 0.00 0.00 0.00 4.40
4048 8323 1.672030 CTGGTGCTCGTCAATGCCA 60.672 57.895 0.00 0.00 0.00 4.92
4049 8324 1.002257 TGGTGCTCGTCAATGCCAT 60.002 52.632 0.00 0.00 0.00 4.40
4050 8325 1.307355 TGGTGCTCGTCAATGCCATG 61.307 55.000 0.00 0.00 0.00 3.66
4051 8326 1.308069 GGTGCTCGTCAATGCCATGT 61.308 55.000 0.00 0.00 0.00 3.21
4052 8327 1.368641 GTGCTCGTCAATGCCATGTA 58.631 50.000 0.00 0.00 0.00 2.29
4053 8328 1.062587 GTGCTCGTCAATGCCATGTAC 59.937 52.381 0.00 0.00 0.00 2.90
4054 8329 1.066215 TGCTCGTCAATGCCATGTACT 60.066 47.619 0.00 0.00 0.00 2.73
4055 8330 2.009774 GCTCGTCAATGCCATGTACTT 58.990 47.619 0.00 0.00 0.00 2.24
4056 8331 2.030946 GCTCGTCAATGCCATGTACTTC 59.969 50.000 0.00 0.00 0.00 3.01
4057 8332 3.261580 CTCGTCAATGCCATGTACTTCA 58.738 45.455 0.00 0.00 0.00 3.02
4058 8333 3.669536 TCGTCAATGCCATGTACTTCAA 58.330 40.909 0.00 0.00 0.00 2.69
4059 8334 3.684305 TCGTCAATGCCATGTACTTCAAG 59.316 43.478 0.00 0.00 0.00 3.02
4060 8335 3.181507 CGTCAATGCCATGTACTTCAAGG 60.182 47.826 0.00 0.00 37.89 3.61
4061 8336 3.129287 GTCAATGCCATGTACTTCAAGGG 59.871 47.826 0.00 0.00 35.66 3.95
4062 8337 3.010027 TCAATGCCATGTACTTCAAGGGA 59.990 43.478 0.00 0.00 39.36 4.20
4063 8338 2.489938 TGCCATGTACTTCAAGGGAC 57.510 50.000 0.00 0.00 35.66 4.46
4064 8339 1.702401 TGCCATGTACTTCAAGGGACA 59.298 47.619 0.00 0.00 35.66 4.02
4065 8340 2.290260 TGCCATGTACTTCAAGGGACAG 60.290 50.000 0.00 0.00 35.66 3.51
4066 8341 2.290323 GCCATGTACTTCAAGGGACAGT 60.290 50.000 0.00 0.00 35.66 3.55
4067 8342 3.338249 CCATGTACTTCAAGGGACAGTG 58.662 50.000 0.00 0.00 31.94 3.66
4068 8343 3.338249 CATGTACTTCAAGGGACAGTGG 58.662 50.000 0.00 0.00 0.00 4.00
4069 8344 2.684943 TGTACTTCAAGGGACAGTGGA 58.315 47.619 0.00 0.00 0.00 4.02
4070 8345 3.042682 TGTACTTCAAGGGACAGTGGAA 58.957 45.455 0.00 0.00 0.00 3.53
4071 8346 2.640316 ACTTCAAGGGACAGTGGAAC 57.360 50.000 0.00 0.00 0.00 3.62
4072 8347 1.843851 ACTTCAAGGGACAGTGGAACA 59.156 47.619 0.00 0.00 41.43 3.18
4073 8348 2.241176 ACTTCAAGGGACAGTGGAACAA 59.759 45.455 0.00 0.00 44.16 2.83
4074 8349 2.638480 TCAAGGGACAGTGGAACAAG 57.362 50.000 0.00 0.00 44.16 3.16
4075 8350 2.123589 TCAAGGGACAGTGGAACAAGA 58.876 47.619 0.00 0.00 44.16 3.02
4076 8351 2.158813 TCAAGGGACAGTGGAACAAGAC 60.159 50.000 0.00 0.00 44.16 3.01
4077 8352 1.507140 AGGGACAGTGGAACAAGACA 58.493 50.000 0.00 0.00 44.16 3.41
4078 8353 2.057922 AGGGACAGTGGAACAAGACAT 58.942 47.619 0.00 0.00 44.16 3.06
4079 8354 2.443255 AGGGACAGTGGAACAAGACATT 59.557 45.455 0.00 0.00 44.16 2.71
4080 8355 2.814336 GGGACAGTGGAACAAGACATTC 59.186 50.000 0.00 0.00 44.16 2.67
4081 8356 3.496870 GGGACAGTGGAACAAGACATTCT 60.497 47.826 0.00 0.00 44.16 2.40
4082 8357 4.137543 GGACAGTGGAACAAGACATTCTT 58.862 43.478 0.00 0.00 44.16 2.52
4083 8358 4.214332 GGACAGTGGAACAAGACATTCTTC 59.786 45.833 0.00 0.00 44.16 2.87
4084 8359 3.809832 ACAGTGGAACAAGACATTCTTCG 59.190 43.478 0.00 0.00 44.16 3.79
4085 8360 4.058124 CAGTGGAACAAGACATTCTTCGA 58.942 43.478 0.00 0.00 44.16 3.71
4086 8361 4.692625 CAGTGGAACAAGACATTCTTCGAT 59.307 41.667 0.00 0.00 44.16 3.59
4087 8362 5.869344 CAGTGGAACAAGACATTCTTCGATA 59.131 40.000 0.00 0.00 44.16 2.92
4088 8363 6.368791 CAGTGGAACAAGACATTCTTCGATAA 59.631 38.462 0.00 0.00 44.16 1.75
4089 8364 6.591834 AGTGGAACAAGACATTCTTCGATAAG 59.408 38.462 0.00 0.00 44.16 1.73
4090 8365 5.874810 TGGAACAAGACATTCTTCGATAAGG 59.125 40.000 0.00 0.00 33.78 2.69
4091 8366 5.220681 GGAACAAGACATTCTTCGATAAGGC 60.221 44.000 0.00 0.00 33.78 4.35
4092 8367 4.832248 ACAAGACATTCTTCGATAAGGCA 58.168 39.130 0.00 0.00 33.78 4.75
4093 8368 4.631813 ACAAGACATTCTTCGATAAGGCAC 59.368 41.667 0.00 0.00 33.78 5.01
4094 8369 3.448686 AGACATTCTTCGATAAGGCACG 58.551 45.455 0.00 0.00 33.22 5.34
4095 8370 1.933853 ACATTCTTCGATAAGGCACGC 59.066 47.619 0.00 0.00 33.22 5.34
4096 8371 1.261619 CATTCTTCGATAAGGCACGCC 59.738 52.381 0.00 0.00 33.22 5.68
4097 8372 0.248012 TTCTTCGATAAGGCACGCCA 59.752 50.000 11.35 0.00 38.92 5.69
4098 8373 0.464036 TCTTCGATAAGGCACGCCAT 59.536 50.000 11.35 0.00 38.92 4.40
4099 8374 0.861837 CTTCGATAAGGCACGCCATC 59.138 55.000 11.35 4.63 38.92 3.51
4100 8375 0.464036 TTCGATAAGGCACGCCATCT 59.536 50.000 11.35 0.00 38.92 2.90
4101 8376 0.249447 TCGATAAGGCACGCCATCTG 60.249 55.000 11.35 3.06 38.92 2.90
4102 8377 0.530650 CGATAAGGCACGCCATCTGT 60.531 55.000 11.35 0.00 38.92 3.41
4103 8378 1.668419 GATAAGGCACGCCATCTGTT 58.332 50.000 11.35 0.00 38.92 3.16
4104 8379 2.017049 GATAAGGCACGCCATCTGTTT 58.983 47.619 11.35 0.00 38.92 2.83
4105 8380 1.448985 TAAGGCACGCCATCTGTTTC 58.551 50.000 11.35 0.00 38.92 2.78
4106 8381 0.537143 AAGGCACGCCATCTGTTTCA 60.537 50.000 11.35 0.00 38.92 2.69
4107 8382 1.210155 GGCACGCCATCTGTTTCAC 59.790 57.895 2.36 0.00 35.81 3.18
4108 8383 1.210155 GCACGCCATCTGTTTCACC 59.790 57.895 0.00 0.00 0.00 4.02
4109 8384 1.497278 CACGCCATCTGTTTCACCG 59.503 57.895 0.00 0.00 0.00 4.94
4110 8385 2.325082 ACGCCATCTGTTTCACCGC 61.325 57.895 0.00 0.00 0.00 5.68
4111 8386 2.877691 GCCATCTGTTTCACCGCC 59.122 61.111 0.00 0.00 0.00 6.13
4112 8387 1.675641 GCCATCTGTTTCACCGCCT 60.676 57.895 0.00 0.00 0.00 5.52
4113 8388 1.648467 GCCATCTGTTTCACCGCCTC 61.648 60.000 0.00 0.00 0.00 4.70
4114 8389 1.361668 CCATCTGTTTCACCGCCTCG 61.362 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
435 439 0.681175 GTGCAGGCAATTGTCCCTTT 59.319 50.000 6.39 0.00 0.00 3.11
1678 1711 5.726793 ACTACTATCCATGACCCATAATCCC 59.273 44.000 0.00 0.00 0.00 3.85
2251 6395 4.857037 CAGATGTGCATGTGATCTTGTTTG 59.143 41.667 3.56 0.00 34.35 2.93
2309 6454 6.126940 TGGCTGATCTTTAAGAGATAGCAAGT 60.127 38.462 20.88 0.00 45.17 3.16
2608 6766 5.300286 AGCAGTGTTTAGATTTTGCAGTCTT 59.700 36.000 4.06 0.00 34.17 3.01
3573 7847 5.743398 CGGTTTTCATAATAGTCGACGGTAA 59.257 40.000 10.46 0.00 0.00 2.85
3900 8175 9.729281 TGCATCTACATAATGACAATCATATGT 57.271 29.630 1.90 13.49 35.76 2.29
3902 8177 8.890718 GCTGCATCTACATAATGACAATCATAT 58.109 33.333 0.00 0.00 35.76 1.78
3903 8178 7.335171 GGCTGCATCTACATAATGACAATCATA 59.665 37.037 0.50 0.00 35.76 2.15
3904 8179 6.150641 GGCTGCATCTACATAATGACAATCAT 59.849 38.462 0.50 0.00 39.09 2.45
3905 8180 5.471116 GGCTGCATCTACATAATGACAATCA 59.529 40.000 0.50 0.00 0.00 2.57
3906 8181 5.471116 TGGCTGCATCTACATAATGACAATC 59.529 40.000 0.50 0.00 0.00 2.67
3907 8182 5.379187 TGGCTGCATCTACATAATGACAAT 58.621 37.500 0.50 0.00 0.00 2.71
3908 8183 4.779696 TGGCTGCATCTACATAATGACAA 58.220 39.130 0.50 0.00 0.00 3.18
3909 8184 4.420522 TGGCTGCATCTACATAATGACA 57.579 40.909 0.50 0.00 0.00 3.58
3910 8185 5.278169 CCTTTGGCTGCATCTACATAATGAC 60.278 44.000 0.50 0.00 0.00 3.06
3911 8186 4.823442 CCTTTGGCTGCATCTACATAATGA 59.177 41.667 0.50 0.00 0.00 2.57
3912 8187 4.823442 TCCTTTGGCTGCATCTACATAATG 59.177 41.667 0.50 0.00 0.00 1.90
3913 8188 5.052693 TCCTTTGGCTGCATCTACATAAT 57.947 39.130 0.50 0.00 0.00 1.28
3914 8189 4.080356 ACTCCTTTGGCTGCATCTACATAA 60.080 41.667 0.50 0.00 0.00 1.90
3915 8190 3.455910 ACTCCTTTGGCTGCATCTACATA 59.544 43.478 0.50 0.00 0.00 2.29
3916 8191 2.240667 ACTCCTTTGGCTGCATCTACAT 59.759 45.455 0.50 0.00 0.00 2.29
3917 8192 1.630369 ACTCCTTTGGCTGCATCTACA 59.370 47.619 0.50 0.00 0.00 2.74
3918 8193 2.284190 GACTCCTTTGGCTGCATCTAC 58.716 52.381 0.50 0.00 0.00 2.59
3919 8194 1.908619 TGACTCCTTTGGCTGCATCTA 59.091 47.619 0.50 0.00 0.00 1.98
3920 8195 0.694771 TGACTCCTTTGGCTGCATCT 59.305 50.000 0.50 0.00 0.00 2.90
3921 8196 1.538047 TTGACTCCTTTGGCTGCATC 58.462 50.000 0.50 0.00 0.00 3.91
3922 8197 1.822990 CATTGACTCCTTTGGCTGCAT 59.177 47.619 0.50 0.00 0.00 3.96
3923 8198 1.250328 CATTGACTCCTTTGGCTGCA 58.750 50.000 0.50 0.00 0.00 4.41
3924 8199 0.529378 CCATTGACTCCTTTGGCTGC 59.471 55.000 0.00 0.00 0.00 5.25
3925 8200 2.089980 CTCCATTGACTCCTTTGGCTG 58.910 52.381 0.00 0.00 0.00 4.85
3926 8201 1.615384 GCTCCATTGACTCCTTTGGCT 60.615 52.381 0.00 0.00 0.00 4.75
3927 8202 0.813821 GCTCCATTGACTCCTTTGGC 59.186 55.000 0.00 0.00 0.00 4.52
3928 8203 2.089980 CTGCTCCATTGACTCCTTTGG 58.910 52.381 0.00 0.00 0.00 3.28
3929 8204 3.063510 TCTGCTCCATTGACTCCTTTG 57.936 47.619 0.00 0.00 0.00 2.77
3930 8205 3.265221 TGATCTGCTCCATTGACTCCTTT 59.735 43.478 0.00 0.00 0.00 3.11
3931 8206 2.842496 TGATCTGCTCCATTGACTCCTT 59.158 45.455 0.00 0.00 0.00 3.36
3932 8207 2.475155 TGATCTGCTCCATTGACTCCT 58.525 47.619 0.00 0.00 0.00 3.69
3933 8208 2.941720 GTTGATCTGCTCCATTGACTCC 59.058 50.000 0.00 0.00 0.00 3.85
3934 8209 2.606725 CGTTGATCTGCTCCATTGACTC 59.393 50.000 0.00 0.00 0.00 3.36
3935 8210 2.625737 CGTTGATCTGCTCCATTGACT 58.374 47.619 0.00 0.00 0.00 3.41
3936 8211 1.063174 GCGTTGATCTGCTCCATTGAC 59.937 52.381 0.00 0.00 0.00 3.18
3937 8212 1.065926 AGCGTTGATCTGCTCCATTGA 60.066 47.619 0.00 0.00 36.53 2.57
3938 8213 1.376543 AGCGTTGATCTGCTCCATTG 58.623 50.000 0.00 0.00 36.53 2.82
3939 8214 1.741706 CAAGCGTTGATCTGCTCCATT 59.258 47.619 7.89 0.00 41.46 3.16
3940 8215 1.376543 CAAGCGTTGATCTGCTCCAT 58.623 50.000 7.89 0.00 41.46 3.41
3941 8216 0.674581 CCAAGCGTTGATCTGCTCCA 60.675 55.000 7.89 0.00 41.46 3.86
3942 8217 1.372087 CCCAAGCGTTGATCTGCTCC 61.372 60.000 7.89 0.00 41.46 4.70
3943 8218 0.674895 ACCCAAGCGTTGATCTGCTC 60.675 55.000 7.89 0.00 41.46 4.26
3944 8219 0.957395 CACCCAAGCGTTGATCTGCT 60.957 55.000 0.00 0.00 44.97 4.24
3945 8220 1.503542 CACCCAAGCGTTGATCTGC 59.496 57.895 0.00 0.00 0.00 4.26
3946 8221 0.606401 ACCACCCAAGCGTTGATCTG 60.606 55.000 0.00 0.00 0.00 2.90
3947 8222 0.606401 CACCACCCAAGCGTTGATCT 60.606 55.000 0.00 0.00 0.00 2.75
3948 8223 1.586154 CCACCACCCAAGCGTTGATC 61.586 60.000 0.15 0.00 0.00 2.92
3949 8224 1.603455 CCACCACCCAAGCGTTGAT 60.603 57.895 0.15 0.00 0.00 2.57
3950 8225 2.203280 CCACCACCCAAGCGTTGA 60.203 61.111 0.15 0.00 0.00 3.18
3951 8226 3.977244 GCCACCACCCAAGCGTTG 61.977 66.667 0.00 0.00 0.00 4.10
3955 8230 3.977244 CAACGCCACCACCCAAGC 61.977 66.667 0.00 0.00 0.00 4.01
3956 8231 2.203280 TCAACGCCACCACCCAAG 60.203 61.111 0.00 0.00 0.00 3.61
3957 8232 2.517402 GTCAACGCCACCACCCAA 60.517 61.111 0.00 0.00 0.00 4.12
3958 8233 4.920112 CGTCAACGCCACCACCCA 62.920 66.667 0.00 0.00 0.00 4.51
3959 8234 4.612412 TCGTCAACGCCACCACCC 62.612 66.667 0.00 0.00 39.60 4.61
3960 8235 2.589442 TTCGTCAACGCCACCACC 60.589 61.111 0.00 0.00 39.60 4.61
3961 8236 2.629763 GTTCGTCAACGCCACCAC 59.370 61.111 0.00 0.00 39.60 4.16
3969 8244 1.359459 GGATGAGGCCGTTCGTCAAC 61.359 60.000 14.38 4.03 42.14 3.18
3970 8245 1.079405 GGATGAGGCCGTTCGTCAA 60.079 57.895 14.38 0.00 42.14 3.18
3971 8246 2.577059 GGATGAGGCCGTTCGTCA 59.423 61.111 14.38 5.42 42.90 4.35
3972 8247 2.202892 GGGATGAGGCCGTTCGTC 60.203 66.667 5.78 5.78 33.30 4.20
3973 8248 3.782443 GGGGATGAGGCCGTTCGT 61.782 66.667 0.00 0.00 0.00 3.85
3974 8249 3.447025 GAGGGGATGAGGCCGTTCG 62.447 68.421 0.00 0.00 0.00 3.95
3975 8250 2.506472 GAGGGGATGAGGCCGTTC 59.494 66.667 0.00 0.00 0.00 3.95
3976 8251 3.090532 GGAGGGGATGAGGCCGTT 61.091 66.667 0.00 0.00 0.00 4.44
3977 8252 3.721172 ATGGAGGGGATGAGGCCGT 62.721 63.158 0.00 0.00 0.00 5.68
3978 8253 2.851102 ATGGAGGGGATGAGGCCG 60.851 66.667 0.00 0.00 0.00 6.13
3979 8254 2.888447 CGATGGAGGGGATGAGGCC 61.888 68.421 0.00 0.00 0.00 5.19
3980 8255 2.105806 GACGATGGAGGGGATGAGGC 62.106 65.000 0.00 0.00 0.00 4.70
3981 8256 1.810606 CGACGATGGAGGGGATGAGG 61.811 65.000 0.00 0.00 0.00 3.86
3982 8257 0.823769 TCGACGATGGAGGGGATGAG 60.824 60.000 0.00 0.00 0.00 2.90
3983 8258 1.107538 GTCGACGATGGAGGGGATGA 61.108 60.000 0.00 0.00 0.00 2.92
3984 8259 1.364171 GTCGACGATGGAGGGGATG 59.636 63.158 0.00 0.00 0.00 3.51
3985 8260 2.194212 CGTCGACGATGGAGGGGAT 61.194 63.158 33.35 0.00 43.02 3.85
3986 8261 2.827190 CGTCGACGATGGAGGGGA 60.827 66.667 33.35 0.00 43.02 4.81
3987 8262 3.900892 CCGTCGACGATGGAGGGG 61.901 72.222 37.65 15.45 40.94 4.79
3988 8263 2.827190 TCCGTCGACGATGGAGGG 60.827 66.667 37.65 19.50 42.15 4.30
3991 8266 1.818363 CCTCTCCGTCGACGATGGA 60.818 63.158 37.65 31.47 44.46 3.41
3992 8267 2.716244 CCTCTCCGTCGACGATGG 59.284 66.667 37.65 27.01 43.02 3.51
3993 8268 2.024871 GCCTCTCCGTCGACGATG 59.975 66.667 37.65 27.18 43.02 3.84
3994 8269 3.574445 CGCCTCTCCGTCGACGAT 61.574 66.667 37.65 0.00 43.02 3.73
4027 8302 1.639298 GCATTGACGAGCACCAGGTC 61.639 60.000 0.00 0.00 38.87 3.85
4028 8303 1.672356 GCATTGACGAGCACCAGGT 60.672 57.895 0.00 0.00 0.00 4.00
4029 8304 2.401766 GGCATTGACGAGCACCAGG 61.402 63.158 0.00 0.00 0.00 4.45
4030 8305 1.028330 ATGGCATTGACGAGCACCAG 61.028 55.000 0.00 0.00 0.00 4.00
4031 8306 1.002257 ATGGCATTGACGAGCACCA 60.002 52.632 0.00 0.00 0.00 4.17
4032 8307 1.308069 ACATGGCATTGACGAGCACC 61.308 55.000 0.00 0.00 0.00 5.01
4033 8308 1.062587 GTACATGGCATTGACGAGCAC 59.937 52.381 0.00 0.00 0.00 4.40
4034 8309 1.066215 AGTACATGGCATTGACGAGCA 60.066 47.619 0.00 0.00 0.00 4.26
4035 8310 1.656652 AGTACATGGCATTGACGAGC 58.343 50.000 0.00 0.00 0.00 5.03
4036 8311 3.261580 TGAAGTACATGGCATTGACGAG 58.738 45.455 0.00 0.00 0.00 4.18
4037 8312 3.326836 TGAAGTACATGGCATTGACGA 57.673 42.857 0.00 0.00 0.00 4.20
4038 8313 3.181507 CCTTGAAGTACATGGCATTGACG 60.182 47.826 0.00 0.00 37.08 4.35
4039 8314 3.129287 CCCTTGAAGTACATGGCATTGAC 59.871 47.826 0.00 0.00 40.94 3.18
4040 8315 3.010027 TCCCTTGAAGTACATGGCATTGA 59.990 43.478 0.00 0.00 40.94 2.57
4041 8316 3.129287 GTCCCTTGAAGTACATGGCATTG 59.871 47.826 0.00 0.00 40.94 2.82
4042 8317 3.245229 TGTCCCTTGAAGTACATGGCATT 60.245 43.478 0.00 0.00 40.94 3.56
4043 8318 2.308570 TGTCCCTTGAAGTACATGGCAT 59.691 45.455 0.00 0.00 40.94 4.40
4044 8319 1.702401 TGTCCCTTGAAGTACATGGCA 59.298 47.619 0.00 0.00 40.94 4.92
4045 8320 2.290323 ACTGTCCCTTGAAGTACATGGC 60.290 50.000 0.00 0.00 40.94 4.40
4046 8321 3.338249 CACTGTCCCTTGAAGTACATGG 58.662 50.000 0.00 0.00 41.63 3.66
4047 8322 3.007940 TCCACTGTCCCTTGAAGTACATG 59.992 47.826 0.00 0.00 0.00 3.21
4048 8323 3.248024 TCCACTGTCCCTTGAAGTACAT 58.752 45.455 0.00 0.00 0.00 2.29
4049 8324 2.684943 TCCACTGTCCCTTGAAGTACA 58.315 47.619 0.00 0.00 0.00 2.90
4050 8325 3.181458 TGTTCCACTGTCCCTTGAAGTAC 60.181 47.826 0.00 0.00 0.00 2.73
4051 8326 3.042682 TGTTCCACTGTCCCTTGAAGTA 58.957 45.455 0.00 0.00 0.00 2.24
4052 8327 1.843851 TGTTCCACTGTCCCTTGAAGT 59.156 47.619 0.00 0.00 0.00 3.01
4053 8328 2.638480 TGTTCCACTGTCCCTTGAAG 57.362 50.000 0.00 0.00 0.00 3.02
4054 8329 2.507886 TCTTGTTCCACTGTCCCTTGAA 59.492 45.455 0.00 0.00 0.00 2.69
4055 8330 2.123589 TCTTGTTCCACTGTCCCTTGA 58.876 47.619 0.00 0.00 0.00 3.02
4056 8331 2.222027 GTCTTGTTCCACTGTCCCTTG 58.778 52.381 0.00 0.00 0.00 3.61
4057 8332 1.843851 TGTCTTGTTCCACTGTCCCTT 59.156 47.619 0.00 0.00 0.00 3.95
4058 8333 1.507140 TGTCTTGTTCCACTGTCCCT 58.493 50.000 0.00 0.00 0.00 4.20
4059 8334 2.568623 ATGTCTTGTTCCACTGTCCC 57.431 50.000 0.00 0.00 0.00 4.46
4060 8335 3.744660 AGAATGTCTTGTTCCACTGTCC 58.255 45.455 0.00 0.00 0.00 4.02
4061 8336 4.084328 CGAAGAATGTCTTGTTCCACTGTC 60.084 45.833 0.00 0.00 36.73 3.51
4062 8337 3.809832 CGAAGAATGTCTTGTTCCACTGT 59.190 43.478 0.00 0.00 36.73 3.55
4063 8338 4.058124 TCGAAGAATGTCTTGTTCCACTG 58.942 43.478 0.00 0.00 36.73 3.66
4064 8339 4.336889 TCGAAGAATGTCTTGTTCCACT 57.663 40.909 0.00 0.00 36.73 4.00
4065 8340 6.183360 CCTTATCGAAGAATGTCTTGTTCCAC 60.183 42.308 0.00 0.00 43.58 4.02
4066 8341 5.874810 CCTTATCGAAGAATGTCTTGTTCCA 59.125 40.000 0.00 0.00 43.58 3.53
4067 8342 5.220681 GCCTTATCGAAGAATGTCTTGTTCC 60.221 44.000 0.00 0.00 43.58 3.62
4068 8343 5.351465 TGCCTTATCGAAGAATGTCTTGTTC 59.649 40.000 0.00 0.00 43.58 3.18
4069 8344 5.122396 GTGCCTTATCGAAGAATGTCTTGTT 59.878 40.000 0.00 0.00 43.58 2.83
4070 8345 4.631813 GTGCCTTATCGAAGAATGTCTTGT 59.368 41.667 0.00 0.00 43.58 3.16
4071 8346 4.259970 CGTGCCTTATCGAAGAATGTCTTG 60.260 45.833 0.00 0.00 43.58 3.02
4072 8347 3.865745 CGTGCCTTATCGAAGAATGTCTT 59.134 43.478 0.00 0.00 43.58 3.01
4073 8348 3.448686 CGTGCCTTATCGAAGAATGTCT 58.551 45.455 0.00 0.00 43.58 3.41
4074 8349 2.033662 GCGTGCCTTATCGAAGAATGTC 60.034 50.000 0.00 0.00 43.58 3.06
4075 8350 1.933853 GCGTGCCTTATCGAAGAATGT 59.066 47.619 0.00 0.00 43.58 2.71
4076 8351 1.261619 GGCGTGCCTTATCGAAGAATG 59.738 52.381 2.98 0.00 43.58 2.67
4077 8352 1.134521 TGGCGTGCCTTATCGAAGAAT 60.135 47.619 12.84 0.00 37.19 2.40
4078 8353 0.248012 TGGCGTGCCTTATCGAAGAA 59.752 50.000 12.84 0.00 37.19 2.52
4079 8354 0.464036 ATGGCGTGCCTTATCGAAGA 59.536 50.000 12.84 0.00 37.86 2.87
4080 8355 0.861837 GATGGCGTGCCTTATCGAAG 59.138 55.000 12.84 0.00 36.94 3.79
4081 8356 0.464036 AGATGGCGTGCCTTATCGAA 59.536 50.000 12.84 0.00 36.94 3.71
4082 8357 0.249447 CAGATGGCGTGCCTTATCGA 60.249 55.000 12.84 0.00 36.94 3.59
4083 8358 0.530650 ACAGATGGCGTGCCTTATCG 60.531 55.000 12.84 6.90 36.94 2.92
4084 8359 1.668419 AACAGATGGCGTGCCTTATC 58.332 50.000 12.84 7.71 36.94 1.75
4085 8360 2.017049 GAAACAGATGGCGTGCCTTAT 58.983 47.619 12.84 0.00 36.94 1.73
4086 8361 1.271108 TGAAACAGATGGCGTGCCTTA 60.271 47.619 12.84 0.00 36.94 2.69
4087 8362 0.537143 TGAAACAGATGGCGTGCCTT 60.537 50.000 12.84 5.62 36.94 4.35
4088 8363 1.073025 TGAAACAGATGGCGTGCCT 59.927 52.632 12.84 0.00 36.94 4.75
4089 8364 1.210155 GTGAAACAGATGGCGTGCC 59.790 57.895 3.30 3.30 36.32 5.01
4090 8365 1.210155 GGTGAAACAGATGGCGTGC 59.790 57.895 0.00 0.00 39.98 5.34
4091 8366 1.497278 CGGTGAAACAGATGGCGTG 59.503 57.895 0.00 0.00 39.98 5.34
4092 8367 2.325082 GCGGTGAAACAGATGGCGT 61.325 57.895 0.00 0.00 39.98 5.68
4093 8368 2.480555 GCGGTGAAACAGATGGCG 59.519 61.111 0.00 0.00 39.98 5.69
4094 8369 1.648467 GAGGCGGTGAAACAGATGGC 61.648 60.000 0.00 0.00 39.98 4.40
4095 8370 1.361668 CGAGGCGGTGAAACAGATGG 61.362 60.000 0.00 0.00 39.98 3.51
4096 8371 1.361668 CCGAGGCGGTGAAACAGATG 61.362 60.000 0.00 0.00 42.73 2.90
4097 8372 1.079127 CCGAGGCGGTGAAACAGAT 60.079 57.895 0.00 0.00 42.73 2.90
4098 8373 2.342279 CCGAGGCGGTGAAACAGA 59.658 61.111 0.00 0.00 42.73 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.