Multiple sequence alignment - TraesCS2D01G032000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G032000 chr2D 100.000 3504 0 0 1581 5084 12699783 12696280 0.000000e+00 6471.0
1 TraesCS2D01G032000 chr2D 100.000 1138 0 0 1 1138 12701363 12700226 0.000000e+00 2102.0
2 TraesCS2D01G032000 chr2D 94.012 501 22 7 1 495 308670968 308670470 0.000000e+00 752.0
3 TraesCS2D01G032000 chr2D 93.837 503 23 7 1 497 423238728 423239228 0.000000e+00 750.0
4 TraesCS2D01G032000 chr2A 91.141 1998 111 32 1581 3548 14823322 14821361 0.000000e+00 2649.0
5 TraesCS2D01G032000 chr2A 84.576 979 96 32 3709 4680 14821214 14820284 0.000000e+00 920.0
6 TraesCS2D01G032000 chr2A 87.549 771 54 9 4321 5084 14819966 14819231 0.000000e+00 854.0
7 TraesCS2D01G032000 chr2A 93.548 62 3 1 4674 4734 14820250 14820189 1.950000e-14 91.6
8 TraesCS2D01G032000 chr2B 90.985 1442 81 23 2131 3552 23126933 23125521 0.000000e+00 1897.0
9 TraesCS2D01G032000 chr2B 88.193 1389 117 28 3709 5084 23125378 23124024 0.000000e+00 1613.0
10 TraesCS2D01G032000 chr2B 95.140 535 13 4 1598 2125 23127513 23126985 0.000000e+00 832.0
11 TraesCS2D01G032000 chrUn 89.269 1053 58 23 2294 3326 16234076 16235093 0.000000e+00 1267.0
12 TraesCS2D01G032000 chrUn 95.604 546 13 6 1581 2125 16233302 16233837 0.000000e+00 865.0
13 TraesCS2D01G032000 chrUn 83.040 908 98 28 3602 4499 16235415 16236276 0.000000e+00 773.0
14 TraesCS2D01G032000 chrUn 83.278 299 19 9 855 1138 16232740 16233022 3.930000e-61 246.0
15 TraesCS2D01G032000 chr1D 94.611 501 18 8 2 495 201479434 201478936 0.000000e+00 767.0
16 TraesCS2D01G032000 chr1D 93.613 501 26 6 1 495 390524935 390525435 0.000000e+00 743.0
17 TraesCS2D01G032000 chr3D 94.212 501 21 7 1 495 278152404 278151906 0.000000e+00 758.0
18 TraesCS2D01G032000 chr3D 93.825 502 22 8 1 495 442914315 442914814 0.000000e+00 747.0
19 TraesCS2D01G032000 chr3D 93.613 501 24 7 1 495 129080127 129080625 0.000000e+00 741.0
20 TraesCS2D01G032000 chr6D 93.825 502 24 7 1 495 318188415 318188916 0.000000e+00 749.0
21 TraesCS2D01G032000 chr5D 93.638 503 22 8 1 495 260613602 260614102 0.000000e+00 743.0
22 TraesCS2D01G032000 chr5B 88.654 379 31 7 1581 1959 592506699 592507065 7.760000e-123 451.0
23 TraesCS2D01G032000 chr7B 85.271 129 18 1 674 802 3721146 3721273 1.150000e-26 132.0
24 TraesCS2D01G032000 chr3A 86.408 103 7 3 497 593 16344422 16344321 6.960000e-19 106.0
25 TraesCS2D01G032000 chr7D 85.577 104 9 6 511 613 567539428 567539330 2.500000e-18 104.0
26 TraesCS2D01G032000 chr7D 81.818 88 12 2 717 804 90632251 90632334 2.540000e-08 71.3
27 TraesCS2D01G032000 chr4A 79.675 123 16 5 497 613 505919276 505919395 4.220000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G032000 chr2D 12696280 12701363 5083 True 4286.500000 6471 100.000000 1 5084 2 chr2D.!!$R2 5083
1 TraesCS2D01G032000 chr2D 423238728 423239228 500 False 750.000000 750 93.837000 1 497 1 chr2D.!!$F1 496
2 TraesCS2D01G032000 chr2A 14819231 14823322 4091 True 1128.650000 2649 89.203500 1581 5084 4 chr2A.!!$R1 3503
3 TraesCS2D01G032000 chr2B 23124024 23127513 3489 True 1447.333333 1897 91.439333 1598 5084 3 chr2B.!!$R1 3486
4 TraesCS2D01G032000 chrUn 16232740 16236276 3536 False 787.750000 1267 87.797750 855 4499 4 chrUn.!!$F1 3644
5 TraesCS2D01G032000 chr1D 390524935 390525435 500 False 743.000000 743 93.613000 1 495 1 chr1D.!!$F1 494
6 TraesCS2D01G032000 chr6D 318188415 318188916 501 False 749.000000 749 93.825000 1 495 1 chr6D.!!$F1 494
7 TraesCS2D01G032000 chr5D 260613602 260614102 500 False 743.000000 743 93.638000 1 495 1 chr5D.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 709 0.036388 ATAGTGGGGCGATTATGGCG 60.036 55.0 0.00 0.0 34.76 5.69 F
835 844 0.109086 CGTATATGAGCGGAGGCCAG 60.109 60.0 5.01 0.0 41.24 4.85 F
1111 1135 0.341609 CTTCCCTTCCTCCTCCTCCT 59.658 60.0 0.00 0.0 0.00 3.69 F
2892 3056 0.905337 ACCTGTGACCTACTCTGCCC 60.905 60.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 2155 0.033601 TGAAACAGTGTGGGGCAAGT 60.034 50.000 0.0 0.0 0.00 3.16 R
2802 2964 0.391528 TGGACACAGCATGACCGATG 60.392 55.000 0.0 0.0 45.21 3.84 R
2944 3108 3.149981 GCTTAAAGGCTGTTGTCTTCCT 58.850 45.455 0.0 0.0 37.09 3.36 R
4186 4519 0.380733 TGCGGTATAGTGAGCGACAG 59.619 55.000 0.0 0.0 42.83 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 1.403780 CGAAAGAAGTACGTCAGGGGG 60.404 57.143 11.47 0.00 0.00 5.40
183 184 0.323957 AAAGAAGTACGTCAGGGGGC 59.676 55.000 11.47 0.00 0.00 5.80
390 398 5.252164 TGGGCTCTGGGTTAATAAGTTAGTT 59.748 40.000 0.00 0.00 0.00 2.24
502 511 6.583912 CGTTGGAGACGTATCATAAAACAT 57.416 37.500 12.92 0.00 46.49 2.71
503 512 6.637365 CGTTGGAGACGTATCATAAAACATC 58.363 40.000 12.92 0.00 46.49 3.06
504 513 6.254804 CGTTGGAGACGTATCATAAAACATCA 59.745 38.462 12.92 0.00 46.49 3.07
505 514 7.399523 GTTGGAGACGTATCATAAAACATCAC 58.600 38.462 12.92 0.00 0.00 3.06
506 515 6.635755 TGGAGACGTATCATAAAACATCACA 58.364 36.000 12.92 0.00 0.00 3.58
507 516 7.272244 TGGAGACGTATCATAAAACATCACAT 58.728 34.615 12.92 0.00 0.00 3.21
508 517 8.417884 TGGAGACGTATCATAAAACATCACATA 58.582 33.333 12.92 0.00 0.00 2.29
509 518 9.424319 GGAGACGTATCATAAAACATCACATAT 57.576 33.333 12.92 0.00 0.00 1.78
536 545 5.159399 GCATTTGCATTTGTGACAAAAGT 57.841 34.783 15.31 0.00 41.59 2.66
537 546 5.571277 GCATTTGCATTTGTGACAAAAGTT 58.429 33.333 15.31 0.00 41.59 2.66
538 547 6.028987 GCATTTGCATTTGTGACAAAAGTTT 58.971 32.000 15.31 0.00 41.59 2.66
539 548 6.527372 GCATTTGCATTTGTGACAAAAGTTTT 59.473 30.769 15.31 0.00 41.59 2.43
540 549 7.461677 GCATTTGCATTTGTGACAAAAGTTTTG 60.462 33.333 23.65 23.65 41.59 2.44
541 550 6.791887 TTGCATTTGTGACAAAAGTTTTGA 57.208 29.167 30.20 10.10 0.00 2.69
542 551 6.791887 TGCATTTGTGACAAAAGTTTTGAA 57.208 29.167 30.20 16.23 0.00 2.69
543 552 7.194607 TGCATTTGTGACAAAAGTTTTGAAA 57.805 28.000 30.20 20.58 0.00 2.69
544 553 7.642669 TGCATTTGTGACAAAAGTTTTGAAAA 58.357 26.923 30.20 22.40 0.00 2.29
545 554 8.131100 TGCATTTGTGACAAAAGTTTTGAAAAA 58.869 25.926 30.20 22.13 0.00 1.94
546 555 8.416424 GCATTTGTGACAAAAGTTTTGAAAAAC 58.584 29.630 30.20 21.05 46.54 2.43
560 569 8.437360 GTTTTGAAAAACTCCCATCTCAATTT 57.563 30.769 10.67 0.00 43.68 1.82
561 570 8.337532 GTTTTGAAAAACTCCCATCTCAATTTG 58.662 33.333 10.67 0.00 43.68 2.32
562 571 6.975196 TGAAAAACTCCCATCTCAATTTGA 57.025 33.333 0.00 0.00 0.00 2.69
563 572 6.985117 TGAAAAACTCCCATCTCAATTTGAG 58.015 36.000 18.49 18.49 45.59 3.02
564 573 5.397142 AAAACTCCCATCTCAATTTGAGC 57.603 39.130 19.53 0.00 43.95 4.26
565 574 4.313020 AACTCCCATCTCAATTTGAGCT 57.687 40.909 19.53 9.05 43.95 4.09
566 575 3.883669 ACTCCCATCTCAATTTGAGCTC 58.116 45.455 19.53 6.82 43.95 4.09
567 576 3.265221 ACTCCCATCTCAATTTGAGCTCA 59.735 43.478 19.53 13.74 43.95 4.26
568 577 4.079901 ACTCCCATCTCAATTTGAGCTCAT 60.080 41.667 19.04 0.00 43.95 2.90
569 578 5.131642 ACTCCCATCTCAATTTGAGCTCATA 59.868 40.000 19.04 13.90 43.95 2.15
570 579 6.183361 ACTCCCATCTCAATTTGAGCTCATAT 60.183 38.462 19.04 15.80 43.95 1.78
571 580 6.002082 TCCCATCTCAATTTGAGCTCATATG 58.998 40.000 19.04 16.21 43.95 1.78
572 581 6.002082 CCCATCTCAATTTGAGCTCATATGA 58.998 40.000 19.04 19.29 43.95 2.15
573 582 6.659668 CCCATCTCAATTTGAGCTCATATGAT 59.340 38.462 19.04 13.71 43.95 2.45
574 583 7.148222 CCCATCTCAATTTGAGCTCATATGATC 60.148 40.741 19.04 1.59 43.95 2.92
575 584 7.608376 CCATCTCAATTTGAGCTCATATGATCT 59.392 37.037 19.04 8.80 43.95 2.75
576 585 8.661257 CATCTCAATTTGAGCTCATATGATCTC 58.339 37.037 23.69 23.69 43.95 2.75
577 586 7.732996 TCTCAATTTGAGCTCATATGATCTCA 58.267 34.615 27.46 27.46 43.95 3.27
585 594 8.999220 TGAGCTCATATGATCTCAATATGAAC 57.001 34.615 28.50 7.67 42.29 3.18
586 595 8.591072 TGAGCTCATATGATCTCAATATGAACA 58.409 33.333 28.50 9.78 42.29 3.18
587 596 9.089601 GAGCTCATATGATCTCAATATGAACAG 57.910 37.037 24.92 3.11 37.29 3.16
588 597 8.595421 AGCTCATATGATCTCAATATGAACAGT 58.405 33.333 5.72 0.46 36.99 3.55
589 598 9.866798 GCTCATATGATCTCAATATGAACAGTA 57.133 33.333 5.72 0.00 36.99 2.74
607 616 9.698309 TGAACAGTAAAAATGTGAAAAACTTGA 57.302 25.926 0.00 0.00 0.00 3.02
610 619 9.921637 ACAGTAAAAATGTGAAAAACTTGAAGA 57.078 25.926 0.00 0.00 0.00 2.87
618 627 9.874205 AATGTGAAAAACTTGAAGAAAATCTGA 57.126 25.926 0.00 0.00 0.00 3.27
619 628 9.874205 ATGTGAAAAACTTGAAGAAAATCTGAA 57.126 25.926 0.00 0.00 0.00 3.02
620 629 9.703892 TGTGAAAAACTTGAAGAAAATCTGAAA 57.296 25.926 0.00 0.00 0.00 2.69
625 634 9.927668 AAAACTTGAAGAAAATCTGAAAAGTGA 57.072 25.926 0.00 0.00 29.96 3.41
626 635 8.917415 AACTTGAAGAAAATCTGAAAAGTGAC 57.083 30.769 0.00 0.00 29.96 3.67
627 636 7.189512 ACTTGAAGAAAATCTGAAAAGTGACG 58.810 34.615 0.00 0.00 29.01 4.35
628 637 6.060028 TGAAGAAAATCTGAAAAGTGACGG 57.940 37.500 0.00 0.00 0.00 4.79
629 638 5.588648 TGAAGAAAATCTGAAAAGTGACGGT 59.411 36.000 0.00 0.00 0.00 4.83
630 639 5.674933 AGAAAATCTGAAAAGTGACGGTC 57.325 39.130 0.00 0.00 0.00 4.79
631 640 5.123227 AGAAAATCTGAAAAGTGACGGTCA 58.877 37.500 6.76 6.76 0.00 4.02
632 641 5.588648 AGAAAATCTGAAAAGTGACGGTCAA 59.411 36.000 13.23 0.00 0.00 3.18
633 642 5.828299 AAATCTGAAAAGTGACGGTCAAA 57.172 34.783 13.23 0.00 0.00 2.69
634 643 4.813296 ATCTGAAAAGTGACGGTCAAAC 57.187 40.909 13.23 1.21 0.00 2.93
635 644 3.601435 TCTGAAAAGTGACGGTCAAACA 58.399 40.909 13.23 7.85 0.00 2.83
636 645 4.004314 TCTGAAAAGTGACGGTCAAACAA 58.996 39.130 13.23 0.00 0.00 2.83
637 646 4.638421 TCTGAAAAGTGACGGTCAAACAAT 59.362 37.500 13.23 0.00 0.00 2.71
638 647 4.667262 TGAAAAGTGACGGTCAAACAATG 58.333 39.130 13.23 0.00 0.00 2.82
639 648 4.396478 TGAAAAGTGACGGTCAAACAATGA 59.604 37.500 13.23 0.00 35.05 2.57
650 659 4.111255 TCAAACAATGACAATCCCTCCA 57.889 40.909 0.00 0.00 31.50 3.86
651 660 3.826157 TCAAACAATGACAATCCCTCCAC 59.174 43.478 0.00 0.00 31.50 4.02
652 661 2.514458 ACAATGACAATCCCTCCACC 57.486 50.000 0.00 0.00 0.00 4.61
653 662 1.710244 ACAATGACAATCCCTCCACCA 59.290 47.619 0.00 0.00 0.00 4.17
654 663 2.094675 CAATGACAATCCCTCCACCAC 58.905 52.381 0.00 0.00 0.00 4.16
655 664 1.673767 ATGACAATCCCTCCACCACT 58.326 50.000 0.00 0.00 0.00 4.00
656 665 2.335681 TGACAATCCCTCCACCACTA 57.664 50.000 0.00 0.00 0.00 2.74
657 666 1.906574 TGACAATCCCTCCACCACTAC 59.093 52.381 0.00 0.00 0.00 2.73
658 667 1.209747 GACAATCCCTCCACCACTACC 59.790 57.143 0.00 0.00 0.00 3.18
659 668 0.546598 CAATCCCTCCACCACTACCC 59.453 60.000 0.00 0.00 0.00 3.69
660 669 0.623617 AATCCCTCCACCACTACCCC 60.624 60.000 0.00 0.00 0.00 4.95
661 670 2.562973 ATCCCTCCACCACTACCCCC 62.563 65.000 0.00 0.00 0.00 5.40
662 671 2.124085 CCTCCACCACTACCCCCA 59.876 66.667 0.00 0.00 0.00 4.96
663 672 2.298661 CCTCCACCACTACCCCCAC 61.299 68.421 0.00 0.00 0.00 4.61
664 673 2.204029 TCCACCACTACCCCCACC 60.204 66.667 0.00 0.00 0.00 4.61
665 674 3.335729 CCACCACTACCCCCACCC 61.336 72.222 0.00 0.00 0.00 4.61
666 675 2.204090 CACCACTACCCCCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
667 676 1.850755 CACCACTACCCCCACCCTT 60.851 63.158 0.00 0.00 0.00 3.95
668 677 0.548197 CACCACTACCCCCACCCTTA 60.548 60.000 0.00 0.00 0.00 2.69
669 678 0.196631 ACCACTACCCCCACCCTTAA 59.803 55.000 0.00 0.00 0.00 1.85
670 679 1.203648 ACCACTACCCCCACCCTTAAT 60.204 52.381 0.00 0.00 0.00 1.40
671 680 1.493446 CCACTACCCCCACCCTTAATC 59.507 57.143 0.00 0.00 0.00 1.75
672 681 2.201830 CACTACCCCCACCCTTAATCA 58.798 52.381 0.00 0.00 0.00 2.57
673 682 2.783510 CACTACCCCCACCCTTAATCAT 59.216 50.000 0.00 0.00 0.00 2.45
674 683 3.977999 CACTACCCCCACCCTTAATCATA 59.022 47.826 0.00 0.00 0.00 2.15
675 684 4.414182 CACTACCCCCACCCTTAATCATAA 59.586 45.833 0.00 0.00 0.00 1.90
676 685 4.663592 ACTACCCCCACCCTTAATCATAAG 59.336 45.833 0.00 0.00 38.61 1.73
677 686 3.754976 ACCCCCACCCTTAATCATAAGA 58.245 45.455 0.00 0.00 40.90 2.10
678 687 4.324830 ACCCCCACCCTTAATCATAAGAT 58.675 43.478 0.00 0.00 40.90 2.40
679 688 5.491992 ACCCCCACCCTTAATCATAAGATA 58.508 41.667 0.00 0.00 40.90 1.98
680 689 5.551977 ACCCCCACCCTTAATCATAAGATAG 59.448 44.000 0.00 0.00 40.90 2.08
681 690 5.790618 CCCCCACCCTTAATCATAAGATAGA 59.209 44.000 0.00 0.00 40.90 1.98
682 691 6.448387 CCCCCACCCTTAATCATAAGATAGAT 59.552 42.308 0.00 0.00 40.90 1.98
683 692 7.627697 CCCCCACCCTTAATCATAAGATAGATA 59.372 40.741 0.00 0.00 40.90 1.98
684 693 8.709308 CCCCACCCTTAATCATAAGATAGATAG 58.291 40.741 0.00 0.00 40.90 2.08
685 694 9.273137 CCCACCCTTAATCATAAGATAGATAGT 57.727 37.037 0.00 0.00 40.90 2.12
688 697 9.273137 ACCCTTAATCATAAGATAGATAGTGGG 57.727 37.037 0.00 0.00 40.90 4.61
689 698 8.709308 CCCTTAATCATAAGATAGATAGTGGGG 58.291 40.741 0.00 0.00 40.90 4.96
690 699 8.207545 CCTTAATCATAAGATAGATAGTGGGGC 58.792 40.741 0.00 0.00 40.90 5.80
691 700 5.860941 ATCATAAGATAGATAGTGGGGCG 57.139 43.478 0.00 0.00 31.14 6.13
692 701 4.930696 TCATAAGATAGATAGTGGGGCGA 58.069 43.478 0.00 0.00 0.00 5.54
693 702 5.519808 TCATAAGATAGATAGTGGGGCGAT 58.480 41.667 0.00 0.00 0.00 4.58
694 703 5.958380 TCATAAGATAGATAGTGGGGCGATT 59.042 40.000 0.00 0.00 0.00 3.34
695 704 7.123383 TCATAAGATAGATAGTGGGGCGATTA 58.877 38.462 0.00 0.00 0.00 1.75
696 705 7.785028 TCATAAGATAGATAGTGGGGCGATTAT 59.215 37.037 0.00 0.00 0.00 1.28
697 706 5.860941 AGATAGATAGTGGGGCGATTATG 57.139 43.478 0.00 0.00 0.00 1.90
698 707 4.651503 AGATAGATAGTGGGGCGATTATGG 59.348 45.833 0.00 0.00 0.00 2.74
699 708 1.279271 AGATAGTGGGGCGATTATGGC 59.721 52.381 0.00 0.00 0.00 4.40
700 709 0.036388 ATAGTGGGGCGATTATGGCG 60.036 55.000 0.00 0.00 34.76 5.69
701 710 1.116536 TAGTGGGGCGATTATGGCGA 61.117 55.000 0.00 0.00 34.76 5.54
702 711 1.961277 GTGGGGCGATTATGGCGAG 60.961 63.158 0.00 0.00 34.76 5.03
703 712 3.050275 GGGGCGATTATGGCGAGC 61.050 66.667 0.00 0.00 34.76 5.03
704 713 3.050275 GGGCGATTATGGCGAGCC 61.050 66.667 7.26 7.26 46.51 4.70
705 714 3.050275 GGCGATTATGGCGAGCCC 61.050 66.667 12.05 0.00 41.81 5.19
706 715 3.050275 GCGATTATGGCGAGCCCC 61.050 66.667 12.05 0.00 34.56 5.80
707 716 2.743718 CGATTATGGCGAGCCCCT 59.256 61.111 12.05 1.61 34.56 4.79
708 717 1.071471 CGATTATGGCGAGCCCCTT 59.929 57.895 12.05 0.00 34.56 3.95
709 718 0.951040 CGATTATGGCGAGCCCCTTC 60.951 60.000 12.05 2.94 34.56 3.46
710 719 0.606673 GATTATGGCGAGCCCCTTCC 60.607 60.000 12.05 0.00 34.56 3.46
711 720 1.062488 ATTATGGCGAGCCCCTTCCT 61.062 55.000 12.05 0.00 34.56 3.36
712 721 1.279025 TTATGGCGAGCCCCTTCCTT 61.279 55.000 12.05 0.00 34.56 3.36
713 722 1.696097 TATGGCGAGCCCCTTCCTTC 61.696 60.000 12.05 0.00 34.56 3.46
714 723 3.403558 GGCGAGCCCCTTCCTTCT 61.404 66.667 1.97 0.00 0.00 2.85
715 724 2.188207 GCGAGCCCCTTCCTTCTC 59.812 66.667 0.00 0.00 0.00 2.87
716 725 2.363172 GCGAGCCCCTTCCTTCTCT 61.363 63.158 0.00 0.00 0.00 3.10
717 726 1.819905 CGAGCCCCTTCCTTCTCTC 59.180 63.158 0.00 0.00 0.00 3.20
718 727 0.972983 CGAGCCCCTTCCTTCTCTCA 60.973 60.000 0.00 0.00 0.00 3.27
719 728 0.829990 GAGCCCCTTCCTTCTCTCAG 59.170 60.000 0.00 0.00 0.00 3.35
720 729 0.620121 AGCCCCTTCCTTCTCTCAGG 60.620 60.000 0.00 0.00 34.86 3.86
721 730 1.911471 CCCCTTCCTTCTCTCAGGC 59.089 63.158 0.00 0.00 33.35 4.85
722 731 1.519719 CCCTTCCTTCTCTCAGGCG 59.480 63.158 0.00 0.00 33.35 5.52
723 732 0.972983 CCCTTCCTTCTCTCAGGCGA 60.973 60.000 0.00 0.00 33.35 5.54
724 733 0.459489 CCTTCCTTCTCTCAGGCGAG 59.541 60.000 0.00 0.77 40.98 5.03
725 734 0.459489 CTTCCTTCTCTCAGGCGAGG 59.541 60.000 6.53 0.00 39.95 4.63
726 735 1.608717 TTCCTTCTCTCAGGCGAGGC 61.609 60.000 6.53 0.00 39.95 4.70
744 753 4.328118 AGGCCATTCCTTCTCTTTCATT 57.672 40.909 5.01 0.00 44.75 2.57
745 754 4.276642 AGGCCATTCCTTCTCTTTCATTC 58.723 43.478 5.01 0.00 44.75 2.67
746 755 4.019174 GGCCATTCCTTCTCTTTCATTCA 58.981 43.478 0.00 0.00 0.00 2.57
747 756 4.142293 GGCCATTCCTTCTCTTTCATTCAC 60.142 45.833 0.00 0.00 0.00 3.18
748 757 4.704057 GCCATTCCTTCTCTTTCATTCACT 59.296 41.667 0.00 0.00 0.00 3.41
749 758 5.163673 GCCATTCCTTCTCTTTCATTCACTC 60.164 44.000 0.00 0.00 0.00 3.51
750 759 5.942236 CCATTCCTTCTCTTTCATTCACTCA 59.058 40.000 0.00 0.00 0.00 3.41
751 760 6.432162 CCATTCCTTCTCTTTCATTCACTCAA 59.568 38.462 0.00 0.00 0.00 3.02
752 761 7.040201 CCATTCCTTCTCTTTCATTCACTCAAA 60.040 37.037 0.00 0.00 0.00 2.69
753 762 7.880160 TTCCTTCTCTTTCATTCACTCAAAA 57.120 32.000 0.00 0.00 0.00 2.44
754 763 8.469309 TTCCTTCTCTTTCATTCACTCAAAAT 57.531 30.769 0.00 0.00 0.00 1.82
755 764 8.103948 TCCTTCTCTTTCATTCACTCAAAATC 57.896 34.615 0.00 0.00 0.00 2.17
756 765 7.020010 CCTTCTCTTTCATTCACTCAAAATCG 58.980 38.462 0.00 0.00 0.00 3.34
757 766 7.095060 CCTTCTCTTTCATTCACTCAAAATCGA 60.095 37.037 0.00 0.00 0.00 3.59
758 767 7.121974 TCTCTTTCATTCACTCAAAATCGAC 57.878 36.000 0.00 0.00 0.00 4.20
759 768 6.931281 TCTCTTTCATTCACTCAAAATCGACT 59.069 34.615 0.00 0.00 0.00 4.18
760 769 7.116948 TCTCTTTCATTCACTCAAAATCGACTC 59.883 37.037 0.00 0.00 0.00 3.36
761 770 6.705825 TCTTTCATTCACTCAAAATCGACTCA 59.294 34.615 0.00 0.00 0.00 3.41
762 771 5.845985 TCATTCACTCAAAATCGACTCAC 57.154 39.130 0.00 0.00 0.00 3.51
763 772 5.541845 TCATTCACTCAAAATCGACTCACT 58.458 37.500 0.00 0.00 0.00 3.41
764 773 5.991606 TCATTCACTCAAAATCGACTCACTT 59.008 36.000 0.00 0.00 0.00 3.16
765 774 7.151976 TCATTCACTCAAAATCGACTCACTTA 58.848 34.615 0.00 0.00 0.00 2.24
766 775 7.655732 TCATTCACTCAAAATCGACTCACTTAA 59.344 33.333 0.00 0.00 0.00 1.85
767 776 7.780008 TTCACTCAAAATCGACTCACTTAAA 57.220 32.000 0.00 0.00 0.00 1.52
768 777 7.780008 TCACTCAAAATCGACTCACTTAAAA 57.220 32.000 0.00 0.00 0.00 1.52
769 778 7.627340 TCACTCAAAATCGACTCACTTAAAAC 58.373 34.615 0.00 0.00 0.00 2.43
770 779 7.494625 TCACTCAAAATCGACTCACTTAAAACT 59.505 33.333 0.00 0.00 0.00 2.66
771 780 7.584123 CACTCAAAATCGACTCACTTAAAACTG 59.416 37.037 0.00 0.00 0.00 3.16
772 781 7.494625 ACTCAAAATCGACTCACTTAAAACTGA 59.505 33.333 0.00 0.00 0.00 3.41
773 782 8.203937 TCAAAATCGACTCACTTAAAACTGAA 57.796 30.769 0.00 0.00 0.00 3.02
774 783 8.670135 TCAAAATCGACTCACTTAAAACTGAAA 58.330 29.630 0.00 0.00 0.00 2.69
775 784 9.284594 CAAAATCGACTCACTTAAAACTGAAAA 57.715 29.630 0.00 0.00 0.00 2.29
778 787 9.665264 AATCGACTCACTTAAAACTGAAAATTC 57.335 29.630 0.00 0.00 0.00 2.17
779 788 8.203937 TCGACTCACTTAAAACTGAAAATTCA 57.796 30.769 0.00 0.00 35.57 2.57
802 811 5.799213 AGCTGACTGAAATGTAGCTAAACT 58.201 37.500 0.00 0.00 42.45 2.66
803 812 5.641209 AGCTGACTGAAATGTAGCTAAACTG 59.359 40.000 0.00 0.00 42.45 3.16
804 813 5.639506 GCTGACTGAAATGTAGCTAAACTGA 59.360 40.000 0.00 0.00 0.00 3.41
805 814 6.314896 GCTGACTGAAATGTAGCTAAACTGAT 59.685 38.462 0.00 0.00 0.00 2.90
806 815 7.148340 GCTGACTGAAATGTAGCTAAACTGATT 60.148 37.037 0.00 0.00 0.00 2.57
807 816 9.371136 CTGACTGAAATGTAGCTAAACTGATTA 57.629 33.333 0.00 0.00 0.00 1.75
808 817 9.719355 TGACTGAAATGTAGCTAAACTGATTAA 57.281 29.630 0.00 0.00 0.00 1.40
815 824 9.503427 AATGTAGCTAAACTGATTAATTTTCGC 57.497 29.630 0.00 0.00 0.00 4.70
816 825 7.469260 TGTAGCTAAACTGATTAATTTTCGCC 58.531 34.615 0.00 0.00 0.00 5.54
817 826 5.569413 AGCTAAACTGATTAATTTTCGCCG 58.431 37.500 0.00 0.00 0.00 6.46
818 827 5.123344 AGCTAAACTGATTAATTTTCGCCGT 59.877 36.000 0.00 0.00 0.00 5.68
819 828 6.314400 AGCTAAACTGATTAATTTTCGCCGTA 59.686 34.615 0.00 0.00 0.00 4.02
820 829 7.012044 AGCTAAACTGATTAATTTTCGCCGTAT 59.988 33.333 0.00 0.00 0.00 3.06
821 830 8.277713 GCTAAACTGATTAATTTTCGCCGTATA 58.722 33.333 0.00 0.00 0.00 1.47
824 833 7.956420 ACTGATTAATTTTCGCCGTATATGA 57.044 32.000 0.00 0.00 0.00 2.15
825 834 8.018677 ACTGATTAATTTTCGCCGTATATGAG 57.981 34.615 0.00 0.00 0.00 2.90
826 835 6.827641 TGATTAATTTTCGCCGTATATGAGC 58.172 36.000 0.00 0.00 0.00 4.26
833 842 4.891566 CGTATATGAGCGGAGGCC 57.108 61.111 0.00 0.00 41.24 5.19
834 843 1.964448 CGTATATGAGCGGAGGCCA 59.036 57.895 5.01 0.00 41.24 5.36
835 844 0.109086 CGTATATGAGCGGAGGCCAG 60.109 60.000 5.01 0.00 41.24 4.85
836 845 0.390472 GTATATGAGCGGAGGCCAGC 60.390 60.000 5.01 7.77 41.24 4.85
837 846 1.877576 TATATGAGCGGAGGCCAGCG 61.878 60.000 5.01 0.00 41.24 5.18
843 852 4.227134 CGGAGGCCAGCGCATAGT 62.227 66.667 11.47 0.00 36.38 2.12
844 853 2.190578 GGAGGCCAGCGCATAGTT 59.809 61.111 11.47 0.00 36.38 2.24
845 854 2.182842 GGAGGCCAGCGCATAGTTG 61.183 63.158 11.47 0.00 36.38 3.16
846 855 1.153369 GAGGCCAGCGCATAGTTGA 60.153 57.895 11.47 0.00 36.38 3.18
847 856 1.153289 AGGCCAGCGCATAGTTGAG 60.153 57.895 11.47 0.00 36.38 3.02
848 857 1.153369 GGCCAGCGCATAGTTGAGA 60.153 57.895 11.47 0.00 36.38 3.27
849 858 0.533755 GGCCAGCGCATAGTTGAGAT 60.534 55.000 11.47 0.00 36.38 2.75
850 859 1.303309 GCCAGCGCATAGTTGAGATT 58.697 50.000 11.47 0.00 32.33 2.40
851 860 1.262683 GCCAGCGCATAGTTGAGATTC 59.737 52.381 11.47 0.00 32.33 2.52
852 861 1.524355 CCAGCGCATAGTTGAGATTCG 59.476 52.381 11.47 0.00 32.33 3.34
853 862 2.463876 CAGCGCATAGTTGAGATTCGA 58.536 47.619 11.47 0.00 32.33 3.71
854 863 2.470628 CAGCGCATAGTTGAGATTCGAG 59.529 50.000 11.47 0.00 32.33 4.04
855 864 2.359214 AGCGCATAGTTGAGATTCGAGA 59.641 45.455 11.47 0.00 0.00 4.04
856 865 2.723658 GCGCATAGTTGAGATTCGAGAG 59.276 50.000 0.30 0.00 0.00 3.20
857 866 3.304257 CGCATAGTTGAGATTCGAGAGG 58.696 50.000 0.00 0.00 0.00 3.69
858 867 3.648009 GCATAGTTGAGATTCGAGAGGG 58.352 50.000 0.00 0.00 0.00 4.30
859 868 3.319405 GCATAGTTGAGATTCGAGAGGGA 59.681 47.826 0.00 0.00 0.00 4.20
860 869 4.794655 GCATAGTTGAGATTCGAGAGGGAC 60.795 50.000 0.00 0.00 0.00 4.46
861 870 1.746220 AGTTGAGATTCGAGAGGGACG 59.254 52.381 0.00 0.00 0.00 4.79
862 871 1.743958 GTTGAGATTCGAGAGGGACGA 59.256 52.381 0.00 0.00 37.99 4.20
863 872 1.669604 TGAGATTCGAGAGGGACGAG 58.330 55.000 0.00 0.00 40.72 4.18
864 873 1.209747 TGAGATTCGAGAGGGACGAGA 59.790 52.381 0.00 0.00 40.72 4.04
865 874 1.871039 GAGATTCGAGAGGGACGAGAG 59.129 57.143 0.00 0.00 40.72 3.20
866 875 0.948678 GATTCGAGAGGGACGAGAGG 59.051 60.000 0.00 0.00 40.72 3.69
867 876 0.466555 ATTCGAGAGGGACGAGAGGG 60.467 60.000 0.00 0.00 40.72 4.30
868 877 2.517402 CGAGAGGGACGAGAGGGG 60.517 72.222 0.00 0.00 0.00 4.79
869 878 2.835895 GAGAGGGACGAGAGGGGC 60.836 72.222 0.00 0.00 0.00 5.80
870 879 4.824515 AGAGGGACGAGAGGGGCG 62.825 72.222 0.00 0.00 0.00 6.13
871 880 4.816984 GAGGGACGAGAGGGGCGA 62.817 72.222 0.00 0.00 0.00 5.54
872 881 4.377760 AGGGACGAGAGGGGCGAA 62.378 66.667 0.00 0.00 0.00 4.70
873 882 3.839432 GGGACGAGAGGGGCGAAG 61.839 72.222 0.00 0.00 0.00 3.79
955 964 2.840102 CAAAACCCGCCCAACCCA 60.840 61.111 0.00 0.00 0.00 4.51
991 1006 2.590411 ATCCCCTCTGCCCTCCCAAT 62.590 60.000 0.00 0.00 0.00 3.16
992 1007 1.385915 CCCCTCTGCCCTCCCAATA 60.386 63.158 0.00 0.00 0.00 1.90
1111 1135 0.341609 CTTCCCTTCCTCCTCCTCCT 59.658 60.000 0.00 0.00 0.00 3.69
1660 1684 2.520741 CGCCTCCTCCTCTCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
1661 1685 3.024217 GCCTCCTCCTCTCCTCCT 58.976 66.667 0.00 0.00 0.00 3.69
1662 1686 1.152546 GCCTCCTCCTCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1789 1822 3.740128 GATCTGGATGTGGGCGCGT 62.740 63.158 8.43 0.00 0.00 6.01
2126 2160 8.296713 TCTTGGTATGAGAAATGTTAAACTTGC 58.703 33.333 0.00 0.00 0.00 4.01
2209 2289 2.644798 ACACCAGCTGGGAGAATTAACT 59.355 45.455 35.42 8.61 41.15 2.24
2217 2300 5.430089 AGCTGGGAGAATTAACTGAGGTTAT 59.570 40.000 0.00 0.00 37.69 1.89
2218 2301 6.069381 AGCTGGGAGAATTAACTGAGGTTATT 60.069 38.462 0.00 0.00 37.69 1.40
2219 2302 7.127339 AGCTGGGAGAATTAACTGAGGTTATTA 59.873 37.037 0.00 0.00 37.69 0.98
2220 2303 7.442666 GCTGGGAGAATTAACTGAGGTTATTAG 59.557 40.741 0.00 0.00 37.69 1.73
2221 2304 7.802117 TGGGAGAATTAACTGAGGTTATTAGG 58.198 38.462 0.00 0.00 37.69 2.69
2222 2305 7.404980 TGGGAGAATTAACTGAGGTTATTAGGT 59.595 37.037 0.00 0.00 37.69 3.08
2223 2306 8.272889 GGGAGAATTAACTGAGGTTATTAGGTT 58.727 37.037 0.00 0.00 37.69 3.50
2302 2433 3.865011 ATTATTGTGCGCAACATCCAA 57.135 38.095 14.00 12.79 38.99 3.53
2341 2472 1.563924 TTACCACTGGTCCTGCGTAT 58.436 50.000 3.21 0.00 37.09 3.06
2354 2485 6.047231 GGTCCTGCGTATATTGTTTCTAGTT 58.953 40.000 0.00 0.00 0.00 2.24
2360 2491 6.197655 TGCGTATATTGTTTCTAGTTGCTACG 59.802 38.462 0.00 0.00 33.39 3.51
2802 2964 0.942252 GTTGACCCGTGGAGTTTGAC 59.058 55.000 0.00 0.00 0.00 3.18
2892 3056 0.905337 ACCTGTGACCTACTCTGCCC 60.905 60.000 0.00 0.00 0.00 5.36
2943 3107 2.175284 TGGCCAATGCTCCATCAGAATA 59.825 45.455 0.61 0.00 37.74 1.75
2944 3108 3.225104 GGCCAATGCTCCATCAGAATAA 58.775 45.455 0.00 0.00 37.74 1.40
2983 3147 1.348036 AGCTACCAGACCTTCCACAAC 59.652 52.381 0.00 0.00 0.00 3.32
3041 3205 5.670149 TTGTTGCATTTAAAATGGCACTG 57.330 34.783 10.83 0.00 35.74 3.66
3271 3436 6.528321 ACTCCATGTGATTATCTGTATGGTG 58.472 40.000 16.30 16.06 37.09 4.17
3372 3634 2.934553 GGCCCTACAAACATCTAACGTC 59.065 50.000 0.00 0.00 0.00 4.34
3446 3708 2.877168 CCATTGCCTGTCTAGAATCTGC 59.123 50.000 0.00 0.00 0.00 4.26
3454 3716 1.035923 TCTAGAATCTGCGAGCCTGG 58.964 55.000 0.00 0.00 0.00 4.45
3463 3725 1.398390 CTGCGAGCCTGGTGTTATTTC 59.602 52.381 0.00 0.00 0.00 2.17
3467 3729 2.932614 CGAGCCTGGTGTTATTTCTGAG 59.067 50.000 0.00 0.00 0.00 3.35
3471 3733 3.821033 GCCTGGTGTTATTTCTGAGTGTT 59.179 43.478 0.00 0.00 0.00 3.32
3474 3736 5.180117 CCTGGTGTTATTTCTGAGTGTTGAG 59.820 44.000 0.00 0.00 0.00 3.02
3475 3737 4.515191 TGGTGTTATTTCTGAGTGTTGAGC 59.485 41.667 0.00 0.00 0.00 4.26
3495 3757 1.533129 CGTCGGTCGCATGTAGAATCA 60.533 52.381 0.00 0.00 0.00 2.57
3510 3773 5.534278 TGTAGAATCAAGATCGATGCTCTCT 59.466 40.000 0.54 0.00 33.11 3.10
3520 3783 6.815089 AGATCGATGCTCTCTTTTTCACTAT 58.185 36.000 0.54 0.00 0.00 2.12
3521 3784 6.700960 AGATCGATGCTCTCTTTTTCACTATG 59.299 38.462 0.54 0.00 0.00 2.23
3524 3787 3.664107 TGCTCTCTTTTTCACTATGCGT 58.336 40.909 0.00 0.00 0.00 5.24
3525 3788 3.679980 TGCTCTCTTTTTCACTATGCGTC 59.320 43.478 0.00 0.00 0.00 5.19
3548 3811 6.308282 GTCACCGAAACATAACAGAACTAGAG 59.692 42.308 0.00 0.00 0.00 2.43
3556 3819 7.735326 ACATAACAGAACTAGAGGGTACAAT 57.265 36.000 0.00 0.00 0.00 2.71
3557 3820 7.783042 ACATAACAGAACTAGAGGGTACAATC 58.217 38.462 0.00 0.00 0.00 2.67
3558 3821 7.399191 ACATAACAGAACTAGAGGGTACAATCA 59.601 37.037 0.00 0.00 0.00 2.57
3559 3822 6.875972 AACAGAACTAGAGGGTACAATCAT 57.124 37.500 0.00 0.00 0.00 2.45
3561 3824 8.554490 AACAGAACTAGAGGGTACAATCATAT 57.446 34.615 0.00 0.00 0.00 1.78
3563 3826 9.303116 ACAGAACTAGAGGGTACAATCATATAG 57.697 37.037 0.00 0.00 0.00 1.31
3564 3827 9.521841 CAGAACTAGAGGGTACAATCATATAGA 57.478 37.037 0.00 0.00 0.00 1.98
3568 3831 9.303116 ACTAGAGGGTACAATCATATAGAAGTG 57.697 37.037 0.00 0.00 0.00 3.16
3569 3832 9.303116 CTAGAGGGTACAATCATATAGAAGTGT 57.697 37.037 0.00 0.00 34.21 3.55
3570 3833 7.957002 AGAGGGTACAATCATATAGAAGTGTG 58.043 38.462 0.00 0.00 32.61 3.82
3571 3834 7.015682 AGAGGGTACAATCATATAGAAGTGTGG 59.984 40.741 0.00 0.00 32.61 4.17
3572 3835 5.701290 GGGTACAATCATATAGAAGTGTGGC 59.299 44.000 0.00 0.00 32.61 5.01
3573 3836 5.405571 GGTACAATCATATAGAAGTGTGGCG 59.594 44.000 0.00 0.00 32.61 5.69
3574 3837 3.809832 ACAATCATATAGAAGTGTGGCGC 59.190 43.478 0.00 0.00 30.04 6.53
3575 3838 3.751479 ATCATATAGAAGTGTGGCGCA 57.249 42.857 10.83 0.00 0.00 6.09
3583 3846 3.420943 GTGTGGCGCACTTCTTGT 58.579 55.556 23.21 0.00 44.41 3.16
3584 3847 2.612200 GTGTGGCGCACTTCTTGTA 58.388 52.632 23.21 0.00 44.41 2.41
3585 3848 0.941542 GTGTGGCGCACTTCTTGTAA 59.058 50.000 23.21 0.00 44.41 2.41
3586 3849 1.332375 GTGTGGCGCACTTCTTGTAAA 59.668 47.619 23.21 0.00 44.41 2.01
3587 3850 2.031157 GTGTGGCGCACTTCTTGTAAAT 60.031 45.455 23.21 0.00 44.41 1.40
3588 3851 2.225491 TGTGGCGCACTTCTTGTAAATC 59.775 45.455 10.83 0.00 35.11 2.17
3589 3852 2.484264 GTGGCGCACTTCTTGTAAATCT 59.516 45.455 10.83 0.00 0.00 2.40
3590 3853 2.742053 TGGCGCACTTCTTGTAAATCTC 59.258 45.455 10.83 0.00 0.00 2.75
3591 3854 2.742053 GGCGCACTTCTTGTAAATCTCA 59.258 45.455 10.83 0.00 0.00 3.27
3592 3855 3.375299 GGCGCACTTCTTGTAAATCTCAT 59.625 43.478 10.83 0.00 0.00 2.90
3593 3856 4.142600 GGCGCACTTCTTGTAAATCTCATT 60.143 41.667 10.83 0.00 0.00 2.57
3594 3857 5.393962 GCGCACTTCTTGTAAATCTCATTT 58.606 37.500 0.30 0.00 36.29 2.32
3595 3858 5.858581 GCGCACTTCTTGTAAATCTCATTTT 59.141 36.000 0.30 0.00 33.82 1.82
3596 3859 6.363357 GCGCACTTCTTGTAAATCTCATTTTT 59.637 34.615 0.30 0.00 33.82 1.94
3597 3860 7.409767 GCGCACTTCTTGTAAATCTCATTTTTC 60.410 37.037 0.30 0.00 33.82 2.29
3598 3861 7.591057 CGCACTTCTTGTAAATCTCATTTTTCA 59.409 33.333 0.00 0.00 33.82 2.69
3599 3862 9.415544 GCACTTCTTGTAAATCTCATTTTTCAT 57.584 29.630 0.00 0.00 33.82 2.57
3601 3864 9.918630 ACTTCTTGTAAATCTCATTTTTCATGG 57.081 29.630 0.00 0.00 33.82 3.66
3603 3866 9.912634 TTCTTGTAAATCTCATTTTTCATGGAC 57.087 29.630 0.00 0.00 33.82 4.02
3604 3867 9.076781 TCTTGTAAATCTCATTTTTCATGGACA 57.923 29.630 0.00 0.00 33.82 4.02
3605 3868 9.695526 CTTGTAAATCTCATTTTTCATGGACAA 57.304 29.630 0.00 0.00 33.82 3.18
3606 3869 9.695526 TTGTAAATCTCATTTTTCATGGACAAG 57.304 29.630 0.00 0.00 33.82 3.16
3607 3870 9.076781 TGTAAATCTCATTTTTCATGGACAAGA 57.923 29.630 0.00 0.00 33.82 3.02
3608 3871 9.346725 GTAAATCTCATTTTTCATGGACAAGAC 57.653 33.333 0.00 0.00 33.82 3.01
3609 3872 7.771927 AATCTCATTTTTCATGGACAAGACT 57.228 32.000 0.00 0.00 0.00 3.24
3610 3873 8.868522 AATCTCATTTTTCATGGACAAGACTA 57.131 30.769 0.00 0.00 0.00 2.59
3611 3874 7.912056 TCTCATTTTTCATGGACAAGACTAG 57.088 36.000 0.00 0.00 0.00 2.57
3612 3875 6.372659 TCTCATTTTTCATGGACAAGACTAGC 59.627 38.462 0.00 0.00 0.00 3.42
3638 3901 9.165035 CATTTGTTTCCACAAGGCATAATAATT 57.835 29.630 0.00 0.00 43.92 1.40
3650 3913 7.116075 AGGCATAATAATTGTCTGTGCATTT 57.884 32.000 0.00 0.00 33.05 2.32
3651 3914 6.982141 AGGCATAATAATTGTCTGTGCATTTG 59.018 34.615 0.00 0.00 33.05 2.32
3653 3916 7.920151 GGCATAATAATTGTCTGTGCATTTGTA 59.080 33.333 0.00 0.00 33.05 2.41
3695 3959 8.514330 TTGAAAAGTTTATCAGTTGTACTGGT 57.486 30.769 6.96 2.55 45.94 4.00
3706 3975 6.694447 TCAGTTGTACTGGTATAGTTTCACC 58.306 40.000 6.96 0.00 45.94 4.02
3718 4016 6.598064 GGTATAGTTTCACCAAGCTTGTACAT 59.402 38.462 24.35 4.92 34.77 2.29
3720 4018 9.326413 GTATAGTTTCACCAAGCTTGTACATAT 57.674 33.333 24.35 14.20 0.00 1.78
3728 4055 5.819379 ACCAAGCTTGTACATATGTGATCTG 59.181 40.000 24.35 6.22 0.00 2.90
3735 4062 7.117523 GCTTGTACATATGTGATCTGGATTCTC 59.882 40.741 18.81 0.00 0.00 2.87
3736 4063 7.846101 TGTACATATGTGATCTGGATTCTCT 57.154 36.000 18.81 0.00 0.00 3.10
3744 4071 4.646945 GTGATCTGGATTCTCTACACTCCA 59.353 45.833 0.00 0.00 36.40 3.86
3749 4076 5.127845 TCTGGATTCTCTACACTCCACAATC 59.872 44.000 0.00 0.00 34.21 2.67
3752 4079 5.163258 GGATTCTCTACACTCCACAATCCAT 60.163 44.000 0.00 0.00 38.37 3.41
3755 4082 6.867519 TCTCTACACTCCACAATCCATTTA 57.132 37.500 0.00 0.00 0.00 1.40
3756 4083 7.252612 TCTCTACACTCCACAATCCATTTAA 57.747 36.000 0.00 0.00 0.00 1.52
3762 4089 7.734942 ACACTCCACAATCCATTTAAAAACAT 58.265 30.769 0.00 0.00 0.00 2.71
3763 4090 8.210265 ACACTCCACAATCCATTTAAAAACATT 58.790 29.630 0.00 0.00 0.00 2.71
3764 4091 9.054922 CACTCCACAATCCATTTAAAAACATTT 57.945 29.630 0.00 0.00 0.00 2.32
3766 4093 9.881529 CTCCACAATCCATTTAAAAACATTTTG 57.118 29.630 0.00 0.00 0.00 2.44
3767 4094 8.348507 TCCACAATCCATTTAAAAACATTTTGC 58.651 29.630 0.00 0.00 0.00 3.68
3768 4095 8.133627 CCACAATCCATTTAAAAACATTTTGCA 58.866 29.630 0.00 0.00 0.00 4.08
3782 4109 9.771915 AAAACATTTTGCAAAAATAAGTCAGTG 57.228 25.926 27.10 18.81 0.00 3.66
3783 4110 6.947258 ACATTTTGCAAAAATAAGTCAGTGC 58.053 32.000 27.10 0.00 0.00 4.40
3784 4111 6.538021 ACATTTTGCAAAAATAAGTCAGTGCA 59.462 30.769 27.10 0.70 40.04 4.57
3785 4112 5.964887 TTTGCAAAAATAAGTCAGTGCAC 57.035 34.783 10.02 9.40 41.37 4.57
3786 4113 4.916983 TGCAAAAATAAGTCAGTGCACT 57.083 36.364 15.25 15.25 37.09 4.40
3787 4114 4.858935 TGCAAAAATAAGTCAGTGCACTC 58.141 39.130 18.64 6.95 37.09 3.51
3795 4124 2.216898 AGTCAGTGCACTCTTCTTTGC 58.783 47.619 18.64 1.70 39.33 3.68
3796 4125 1.265365 GTCAGTGCACTCTTCTTTGCC 59.735 52.381 18.64 0.00 38.00 4.52
3798 4127 1.677576 CAGTGCACTCTTCTTTGCCAA 59.322 47.619 18.64 0.00 38.00 4.52
3805 4134 4.340381 GCACTCTTCTTTGCCAATCCATAT 59.660 41.667 0.00 0.00 32.21 1.78
3806 4135 5.532406 GCACTCTTCTTTGCCAATCCATATA 59.468 40.000 0.00 0.00 32.21 0.86
3808 4137 6.769822 CACTCTTCTTTGCCAATCCATATAGT 59.230 38.462 0.00 0.00 0.00 2.12
3809 4138 6.769822 ACTCTTCTTTGCCAATCCATATAGTG 59.230 38.462 0.00 0.00 0.00 2.74
3810 4139 5.532406 TCTTCTTTGCCAATCCATATAGTGC 59.468 40.000 0.00 0.00 0.00 4.40
3900 4229 2.467566 ACACCGACATTGTAAGGGAC 57.532 50.000 13.36 0.00 0.00 4.46
3908 4237 2.093973 ACATTGTAAGGGACGCTCAGAG 60.094 50.000 0.00 0.00 0.00 3.35
3987 4316 0.036952 ATCAACTGCACCTCTCCACG 60.037 55.000 0.00 0.00 0.00 4.94
4059 4388 3.438297 GAATCGTCGAGAGATCCCAAA 57.562 47.619 0.00 0.00 45.19 3.28
4060 4389 3.376540 GAATCGTCGAGAGATCCCAAAG 58.623 50.000 0.00 0.00 45.19 2.77
4061 4390 0.456221 TCGTCGAGAGATCCCAAAGC 59.544 55.000 0.00 0.00 45.19 3.51
4062 4391 0.457851 CGTCGAGAGATCCCAAAGCT 59.542 55.000 0.00 0.00 45.19 3.74
4063 4392 1.676529 CGTCGAGAGATCCCAAAGCTA 59.323 52.381 0.00 0.00 45.19 3.32
4064 4393 2.294791 CGTCGAGAGATCCCAAAGCTAT 59.705 50.000 0.00 0.00 45.19 2.97
4065 4394 3.502595 CGTCGAGAGATCCCAAAGCTATA 59.497 47.826 0.00 0.00 45.19 1.31
4066 4395 4.378978 CGTCGAGAGATCCCAAAGCTATAG 60.379 50.000 0.00 0.00 45.19 1.31
4067 4396 4.762765 GTCGAGAGATCCCAAAGCTATAGA 59.237 45.833 3.21 0.00 45.19 1.98
4068 4397 5.241949 GTCGAGAGATCCCAAAGCTATAGAA 59.758 44.000 3.21 0.00 45.19 2.10
4069 4398 6.013379 TCGAGAGATCCCAAAGCTATAGAAT 58.987 40.000 3.21 0.00 33.31 2.40
4070 4399 6.151985 TCGAGAGATCCCAAAGCTATAGAATC 59.848 42.308 3.21 0.00 33.31 2.52
4071 4400 6.071672 CGAGAGATCCCAAAGCTATAGAATCA 60.072 42.308 3.21 0.00 0.00 2.57
4072 4401 7.003402 AGAGATCCCAAAGCTATAGAATCAC 57.997 40.000 3.21 0.00 0.00 3.06
4073 4402 6.013812 AGAGATCCCAAAGCTATAGAATCACC 60.014 42.308 3.21 0.00 0.00 4.02
4088 4417 8.846943 ATAGAATCACCGCATCAATAACATTA 57.153 30.769 0.00 0.00 0.00 1.90
4098 4427 7.061441 CCGCATCAATAACATTATCTGATTTGC 59.939 37.037 0.00 0.00 0.00 3.68
4112 4441 6.406692 TCTGATTTGCTAGGTGTAGATACC 57.593 41.667 0.00 0.00 41.17 2.73
4124 4456 9.712305 CTAGGTGTAGATACCATTATTCTTTGG 57.288 37.037 0.00 0.00 43.37 3.28
4171 4504 6.817765 TGAATGTACAAACAAGGGAAGATC 57.182 37.500 0.00 0.00 39.58 2.75
4210 4543 3.424529 GTCGCTCACTATACCGCAATAAC 59.575 47.826 0.00 0.00 0.00 1.89
4212 4545 3.799963 CGCTCACTATACCGCAATAACAA 59.200 43.478 0.00 0.00 0.00 2.83
4213 4546 4.269123 CGCTCACTATACCGCAATAACAAA 59.731 41.667 0.00 0.00 0.00 2.83
4215 4548 5.705813 TCACTATACCGCAATAACAAACG 57.294 39.130 0.00 0.00 0.00 3.60
4283 4617 1.178276 TGGGAGAAGAGAACGAGCTC 58.822 55.000 2.73 2.73 35.11 4.09
4287 4621 2.230266 GGAGAAGAGAACGAGCTCTGTT 59.770 50.000 19.23 19.23 44.18 3.16
4296 4630 2.639065 ACGAGCTCTGTTTGTTGGAAA 58.361 42.857 12.85 0.00 0.00 3.13
4297 4631 8.835736 GAGAACGAGCTCTGTTTGTTGGAAAC 62.836 46.154 19.84 8.32 38.43 2.78
4403 4738 4.041567 TCATTCAGTAGTTCCAAAGCAGGA 59.958 41.667 0.00 0.00 35.41 3.86
4427 4762 7.829706 GGATATAAACTTCCTTCCTGAAAGTGT 59.170 37.037 0.00 0.00 32.69 3.55
4428 4763 6.884280 ATAAACTTCCTTCCTGAAAGTGTG 57.116 37.500 0.00 0.00 32.69 3.82
4494 4829 9.396022 GTTCAGAAATTCCATCCATACTTTCTA 57.604 33.333 0.00 0.00 33.07 2.10
4546 5541 6.519721 GCATCCTACCTTACAGACATGATGAT 60.520 42.308 0.00 0.00 31.12 2.45
4583 5580 8.531982 TGATATAAGACTGCTTGTGAGTACTTT 58.468 33.333 0.00 0.00 35.56 2.66
4626 5623 7.177878 TCAAGCATCTAAAGAAAAGATTCCCT 58.822 34.615 0.00 0.00 36.12 4.20
4634 5631 8.163408 TCTAAAGAAAAGATTCCCTTGTGATGA 58.837 33.333 0.00 0.00 36.12 2.92
4689 5714 8.394667 GCATGTTAGCCTTTATGTTTTAGAAC 57.605 34.615 0.00 0.00 36.29 3.01
4713 5738 3.876914 TGTCTGAAACCAGTCACATGTTC 59.123 43.478 0.00 0.00 33.49 3.18
4757 5782 3.129813 TGATATCGACGGTACAAAGCTGT 59.870 43.478 0.00 0.00 39.75 4.40
4759 5784 0.319211 TCGACGGTACAAAGCTGTGG 60.319 55.000 9.18 0.00 36.96 4.17
4761 5786 1.145803 GACGGTACAAAGCTGTGGAC 58.854 55.000 11.22 11.22 36.96 4.02
4786 5811 7.112779 CCAGGATTACAGATCTTTACAAGGTT 58.887 38.462 0.00 0.00 0.00 3.50
4824 5849 4.020396 ACAATAAAATCCAGCATTGCCACA 60.020 37.500 4.70 0.00 32.76 4.17
4861 5886 7.040892 CCAGCATTACATTACATCATAGCTGTT 60.041 37.037 0.00 0.00 42.91 3.16
4877 5902 3.388024 AGCTGTTGAGGTACTGAAGAACA 59.612 43.478 0.00 0.00 41.55 3.18
4945 5974 3.314553 ACACTTCGACATACAGGAAACG 58.685 45.455 0.00 0.00 0.00 3.60
4968 5997 3.620929 TTATTCTAGTGCTCGGCGTAG 57.379 47.619 6.85 4.28 0.00 3.51
5000 6029 7.178274 TGCAAACTCCCACAAACAATATTAGAT 59.822 33.333 0.00 0.00 0.00 1.98
5003 6032 8.877864 AACTCCCACAAACAATATTAGATTCA 57.122 30.769 0.00 0.00 0.00 2.57
5032 6063 7.596248 CAGAACAATTTTAACAGCAGCATAAGT 59.404 33.333 0.00 0.00 0.00 2.24
5073 6104 3.066291 ACATAACAACAATCCTGGCGA 57.934 42.857 0.00 0.00 0.00 5.54
5074 6105 2.747446 ACATAACAACAATCCTGGCGAC 59.253 45.455 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 1.141053 ACCATCGGGGAACAGAATAGC 59.859 52.381 0.84 0.00 38.30 2.97
158 159 1.986378 CTGACGTACTTCTTTCGCCTG 59.014 52.381 0.68 0.00 0.00 4.85
299 305 5.755849 AGGAATATCAAACGGAGTCCAAAT 58.244 37.500 10.49 0.00 45.00 2.32
402 411 8.760980 TTAATGGGCTTTACTATGCACTTTAT 57.239 30.769 0.00 0.00 34.03 1.40
403 412 8.463607 GTTTAATGGGCTTTACTATGCACTTTA 58.536 33.333 0.00 0.00 33.19 1.85
514 523 5.159399 ACTTTTGTCACAAATGCAAATGC 57.841 34.783 14.50 0.00 42.50 3.56
515 524 7.749570 TCAAAACTTTTGTCACAAATGCAAATG 59.250 29.630 14.50 9.58 34.23 2.32
516 525 7.814642 TCAAAACTTTTGTCACAAATGCAAAT 58.185 26.923 14.50 0.00 34.23 2.32
517 526 7.194607 TCAAAACTTTTGTCACAAATGCAAA 57.805 28.000 14.50 0.00 33.14 3.68
518 527 6.791887 TCAAAACTTTTGTCACAAATGCAA 57.208 29.167 14.50 0.00 0.00 4.08
519 528 6.791887 TTCAAAACTTTTGTCACAAATGCA 57.208 29.167 14.50 0.00 0.00 3.96
520 529 8.416424 GTTTTTCAAAACTTTTGTCACAAATGC 58.584 29.630 14.50 1.68 43.68 3.56
535 544 8.337532 CAAATTGAGATGGGAGTTTTTCAAAAC 58.662 33.333 7.01 7.01 46.54 2.43
536 545 8.263640 TCAAATTGAGATGGGAGTTTTTCAAAA 58.736 29.630 0.00 0.00 0.00 2.44
537 546 7.790027 TCAAATTGAGATGGGAGTTTTTCAAA 58.210 30.769 0.00 0.00 0.00 2.69
538 547 7.358770 TCAAATTGAGATGGGAGTTTTTCAA 57.641 32.000 0.00 0.00 0.00 2.69
539 548 6.975196 TCAAATTGAGATGGGAGTTTTTCA 57.025 33.333 0.00 0.00 0.00 2.69
540 549 8.051998 GAGCTCAAATTGAGATGGGAGTTTTTC 61.052 40.741 25.54 4.04 44.01 2.29
541 550 6.294955 GAGCTCAAATTGAGATGGGAGTTTTT 60.295 38.462 25.54 0.00 44.01 1.94
542 551 5.184671 GAGCTCAAATTGAGATGGGAGTTTT 59.815 40.000 25.54 0.00 44.01 2.43
543 552 4.704057 GAGCTCAAATTGAGATGGGAGTTT 59.296 41.667 25.54 0.25 44.01 2.66
544 553 4.263639 TGAGCTCAAATTGAGATGGGAGTT 60.264 41.667 25.54 0.00 44.01 3.01
545 554 3.265221 TGAGCTCAAATTGAGATGGGAGT 59.735 43.478 25.54 1.45 44.01 3.85
546 555 3.882444 TGAGCTCAAATTGAGATGGGAG 58.118 45.455 25.54 0.00 44.01 4.30
547 556 4.515028 ATGAGCTCAAATTGAGATGGGA 57.485 40.909 25.54 6.89 44.01 4.37
548 557 6.002082 TCATATGAGCTCAAATTGAGATGGG 58.998 40.000 25.54 7.37 44.01 4.00
549 558 7.608376 AGATCATATGAGCTCAAATTGAGATGG 59.392 37.037 25.54 7.06 44.01 3.51
550 559 8.554835 AGATCATATGAGCTCAAATTGAGATG 57.445 34.615 25.54 18.18 44.01 2.90
562 571 8.595421 ACTGTTCATATTGAGATCATATGAGCT 58.405 33.333 22.98 22.98 44.40 4.09
563 572 8.774890 ACTGTTCATATTGAGATCATATGAGC 57.225 34.615 13.13 13.13 38.19 4.26
581 590 9.698309 TCAAGTTTTTCACATTTTTACTGTTCA 57.302 25.926 0.00 0.00 0.00 3.18
584 593 9.921637 TCTTCAAGTTTTTCACATTTTTACTGT 57.078 25.926 0.00 0.00 0.00 3.55
592 601 9.874205 TCAGATTTTCTTCAAGTTTTTCACATT 57.126 25.926 0.00 0.00 0.00 2.71
593 602 9.874205 TTCAGATTTTCTTCAAGTTTTTCACAT 57.126 25.926 0.00 0.00 0.00 3.21
594 603 9.703892 TTTCAGATTTTCTTCAAGTTTTTCACA 57.296 25.926 0.00 0.00 0.00 3.58
599 608 9.927668 TCACTTTTCAGATTTTCTTCAAGTTTT 57.072 25.926 0.00 0.00 0.00 2.43
600 609 9.358872 GTCACTTTTCAGATTTTCTTCAAGTTT 57.641 29.630 0.00 0.00 0.00 2.66
601 610 7.698130 CGTCACTTTTCAGATTTTCTTCAAGTT 59.302 33.333 0.00 0.00 0.00 2.66
602 611 7.189512 CGTCACTTTTCAGATTTTCTTCAAGT 58.810 34.615 0.00 0.00 0.00 3.16
603 612 6.634436 CCGTCACTTTTCAGATTTTCTTCAAG 59.366 38.462 0.00 0.00 0.00 3.02
604 613 6.094881 ACCGTCACTTTTCAGATTTTCTTCAA 59.905 34.615 0.00 0.00 0.00 2.69
605 614 5.588648 ACCGTCACTTTTCAGATTTTCTTCA 59.411 36.000 0.00 0.00 0.00 3.02
606 615 6.061231 ACCGTCACTTTTCAGATTTTCTTC 57.939 37.500 0.00 0.00 0.00 2.87
607 616 5.588648 TGACCGTCACTTTTCAGATTTTCTT 59.411 36.000 0.00 0.00 0.00 2.52
608 617 5.123227 TGACCGTCACTTTTCAGATTTTCT 58.877 37.500 0.00 0.00 0.00 2.52
609 618 5.418310 TGACCGTCACTTTTCAGATTTTC 57.582 39.130 0.00 0.00 0.00 2.29
610 619 5.828299 TTGACCGTCACTTTTCAGATTTT 57.172 34.783 0.00 0.00 0.00 1.82
611 620 5.124776 TGTTTGACCGTCACTTTTCAGATTT 59.875 36.000 0.00 0.00 0.00 2.17
612 621 4.638421 TGTTTGACCGTCACTTTTCAGATT 59.362 37.500 0.00 0.00 0.00 2.40
613 622 4.196193 TGTTTGACCGTCACTTTTCAGAT 58.804 39.130 0.00 0.00 0.00 2.90
614 623 3.601435 TGTTTGACCGTCACTTTTCAGA 58.399 40.909 0.00 0.00 0.00 3.27
615 624 4.349663 TTGTTTGACCGTCACTTTTCAG 57.650 40.909 0.00 0.00 0.00 3.02
616 625 4.396478 TCATTGTTTGACCGTCACTTTTCA 59.604 37.500 0.00 0.00 0.00 2.69
617 626 4.915704 TCATTGTTTGACCGTCACTTTTC 58.084 39.130 0.00 0.00 0.00 2.29
618 627 4.974368 TCATTGTTTGACCGTCACTTTT 57.026 36.364 0.00 0.00 0.00 2.27
629 638 3.826157 GTGGAGGGATTGTCATTGTTTGA 59.174 43.478 0.00 0.00 0.00 2.69
630 639 3.056607 GGTGGAGGGATTGTCATTGTTTG 60.057 47.826 0.00 0.00 0.00 2.93
631 640 3.165071 GGTGGAGGGATTGTCATTGTTT 58.835 45.455 0.00 0.00 0.00 2.83
632 641 2.109834 TGGTGGAGGGATTGTCATTGTT 59.890 45.455 0.00 0.00 0.00 2.83
633 642 1.710244 TGGTGGAGGGATTGTCATTGT 59.290 47.619 0.00 0.00 0.00 2.71
634 643 2.094675 GTGGTGGAGGGATTGTCATTG 58.905 52.381 0.00 0.00 0.00 2.82
635 644 1.995542 AGTGGTGGAGGGATTGTCATT 59.004 47.619 0.00 0.00 0.00 2.57
636 645 1.673767 AGTGGTGGAGGGATTGTCAT 58.326 50.000 0.00 0.00 0.00 3.06
637 646 1.906574 GTAGTGGTGGAGGGATTGTCA 59.093 52.381 0.00 0.00 0.00 3.58
638 647 1.209747 GGTAGTGGTGGAGGGATTGTC 59.790 57.143 0.00 0.00 0.00 3.18
639 648 1.286248 GGTAGTGGTGGAGGGATTGT 58.714 55.000 0.00 0.00 0.00 2.71
640 649 0.546598 GGGTAGTGGTGGAGGGATTG 59.453 60.000 0.00 0.00 0.00 2.67
641 650 0.623617 GGGGTAGTGGTGGAGGGATT 60.624 60.000 0.00 0.00 0.00 3.01
642 651 1.004361 GGGGTAGTGGTGGAGGGAT 59.996 63.158 0.00 0.00 0.00 3.85
643 652 2.453054 GGGGTAGTGGTGGAGGGA 59.547 66.667 0.00 0.00 0.00 4.20
644 653 2.691252 GGGGGTAGTGGTGGAGGG 60.691 72.222 0.00 0.00 0.00 4.30
645 654 2.124085 TGGGGGTAGTGGTGGAGG 59.876 66.667 0.00 0.00 0.00 4.30
646 655 2.298661 GGTGGGGGTAGTGGTGGAG 61.299 68.421 0.00 0.00 0.00 3.86
647 656 2.204029 GGTGGGGGTAGTGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
648 657 3.335729 GGGTGGGGGTAGTGGTGG 61.336 72.222 0.00 0.00 0.00 4.61
649 658 0.548197 TAAGGGTGGGGGTAGTGGTG 60.548 60.000 0.00 0.00 0.00 4.17
650 659 0.196631 TTAAGGGTGGGGGTAGTGGT 59.803 55.000 0.00 0.00 0.00 4.16
651 660 1.493446 GATTAAGGGTGGGGGTAGTGG 59.507 57.143 0.00 0.00 0.00 4.00
652 661 2.201830 TGATTAAGGGTGGGGGTAGTG 58.798 52.381 0.00 0.00 0.00 2.74
653 662 2.672703 TGATTAAGGGTGGGGGTAGT 57.327 50.000 0.00 0.00 0.00 2.73
654 663 4.911522 TCTTATGATTAAGGGTGGGGGTAG 59.088 45.833 0.00 0.00 36.30 3.18
655 664 4.910515 TCTTATGATTAAGGGTGGGGGTA 58.089 43.478 0.00 0.00 36.30 3.69
656 665 3.754976 TCTTATGATTAAGGGTGGGGGT 58.245 45.455 0.00 0.00 36.30 4.95
657 666 5.790618 TCTATCTTATGATTAAGGGTGGGGG 59.209 44.000 0.00 0.00 36.30 5.40
658 667 6.952605 TCTATCTTATGATTAAGGGTGGGG 57.047 41.667 0.00 0.00 36.30 4.96
659 668 9.273137 ACTATCTATCTTATGATTAAGGGTGGG 57.727 37.037 0.00 0.00 36.30 4.61
662 671 9.273137 CCCACTATCTATCTTATGATTAAGGGT 57.727 37.037 0.00 0.00 36.30 4.34
663 672 8.709308 CCCCACTATCTATCTTATGATTAAGGG 58.291 40.741 0.00 0.00 36.30 3.95
664 673 8.207545 GCCCCACTATCTATCTTATGATTAAGG 58.792 40.741 0.00 0.00 36.30 2.69
665 674 7.923344 CGCCCCACTATCTATCTTATGATTAAG 59.077 40.741 0.00 0.00 36.87 1.85
666 675 7.618117 TCGCCCCACTATCTATCTTATGATTAA 59.382 37.037 0.00 0.00 34.32 1.40
667 676 7.123383 TCGCCCCACTATCTATCTTATGATTA 58.877 38.462 0.00 0.00 34.32 1.75
668 677 5.958380 TCGCCCCACTATCTATCTTATGATT 59.042 40.000 0.00 0.00 34.32 2.57
669 678 5.519808 TCGCCCCACTATCTATCTTATGAT 58.480 41.667 0.00 0.00 36.74 2.45
670 679 4.930696 TCGCCCCACTATCTATCTTATGA 58.069 43.478 0.00 0.00 0.00 2.15
671 680 5.860941 ATCGCCCCACTATCTATCTTATG 57.139 43.478 0.00 0.00 0.00 1.90
672 681 7.015682 CCATAATCGCCCCACTATCTATCTTAT 59.984 40.741 0.00 0.00 0.00 1.73
673 682 6.323996 CCATAATCGCCCCACTATCTATCTTA 59.676 42.308 0.00 0.00 0.00 2.10
674 683 5.129485 CCATAATCGCCCCACTATCTATCTT 59.871 44.000 0.00 0.00 0.00 2.40
675 684 4.651503 CCATAATCGCCCCACTATCTATCT 59.348 45.833 0.00 0.00 0.00 1.98
676 685 4.740934 GCCATAATCGCCCCACTATCTATC 60.741 50.000 0.00 0.00 0.00 2.08
677 686 3.134804 GCCATAATCGCCCCACTATCTAT 59.865 47.826 0.00 0.00 0.00 1.98
678 687 2.500098 GCCATAATCGCCCCACTATCTA 59.500 50.000 0.00 0.00 0.00 1.98
679 688 1.279271 GCCATAATCGCCCCACTATCT 59.721 52.381 0.00 0.00 0.00 1.98
680 689 1.739067 GCCATAATCGCCCCACTATC 58.261 55.000 0.00 0.00 0.00 2.08
681 690 0.036388 CGCCATAATCGCCCCACTAT 60.036 55.000 0.00 0.00 0.00 2.12
682 691 1.116536 TCGCCATAATCGCCCCACTA 61.117 55.000 0.00 0.00 0.00 2.74
683 692 2.111043 CGCCATAATCGCCCCACT 59.889 61.111 0.00 0.00 0.00 4.00
684 693 1.961277 CTCGCCATAATCGCCCCAC 60.961 63.158 0.00 0.00 0.00 4.61
685 694 2.425592 CTCGCCATAATCGCCCCA 59.574 61.111 0.00 0.00 0.00 4.96
686 695 3.050275 GCTCGCCATAATCGCCCC 61.050 66.667 0.00 0.00 0.00 5.80
687 696 3.050275 GGCTCGCCATAATCGCCC 61.050 66.667 2.41 0.00 34.75 6.13
688 697 3.050275 GGGCTCGCCATAATCGCC 61.050 66.667 10.51 0.00 39.98 5.54
689 698 3.050275 GGGGCTCGCCATAATCGC 61.050 66.667 10.51 0.00 37.98 4.58
690 699 0.951040 GAAGGGGCTCGCCATAATCG 60.951 60.000 10.51 0.00 37.98 3.34
691 700 0.606673 GGAAGGGGCTCGCCATAATC 60.607 60.000 10.51 2.44 37.98 1.75
692 701 1.062488 AGGAAGGGGCTCGCCATAAT 61.062 55.000 10.51 0.00 37.98 1.28
693 702 1.279025 AAGGAAGGGGCTCGCCATAA 61.279 55.000 10.51 0.00 37.98 1.90
694 703 1.692749 AAGGAAGGGGCTCGCCATA 60.693 57.895 10.51 0.00 37.98 2.74
695 704 3.017581 AAGGAAGGGGCTCGCCAT 61.018 61.111 10.51 0.00 37.98 4.40
696 705 3.717294 GAAGGAAGGGGCTCGCCA 61.717 66.667 10.51 0.00 37.98 5.69
697 706 3.393149 GAGAAGGAAGGGGCTCGCC 62.393 68.421 0.00 0.00 0.00 5.54
698 707 2.188207 GAGAAGGAAGGGGCTCGC 59.812 66.667 0.00 0.00 0.00 5.03
699 708 0.972983 TGAGAGAAGGAAGGGGCTCG 60.973 60.000 0.00 0.00 32.80 5.03
700 709 0.829990 CTGAGAGAAGGAAGGGGCTC 59.170 60.000 0.00 0.00 0.00 4.70
701 710 0.620121 CCTGAGAGAAGGAAGGGGCT 60.620 60.000 0.00 0.00 40.02 5.19
702 711 1.911471 CCTGAGAGAAGGAAGGGGC 59.089 63.158 0.00 0.00 40.02 5.80
703 712 1.911471 GCCTGAGAGAAGGAAGGGG 59.089 63.158 0.00 0.00 40.02 4.79
704 713 0.972983 TCGCCTGAGAGAAGGAAGGG 60.973 60.000 0.00 0.00 40.02 3.95
705 714 0.459489 CTCGCCTGAGAGAAGGAAGG 59.541 60.000 0.00 0.00 45.57 3.46
706 715 0.459489 CCTCGCCTGAGAGAAGGAAG 59.541 60.000 0.00 0.00 45.57 3.46
707 716 1.608717 GCCTCGCCTGAGAGAAGGAA 61.609 60.000 0.00 0.00 45.57 3.36
708 717 2.055042 GCCTCGCCTGAGAGAAGGA 61.055 63.158 0.00 0.00 45.57 3.36
709 718 2.498726 GCCTCGCCTGAGAGAAGG 59.501 66.667 0.00 0.00 45.57 3.46
710 719 2.498726 GGCCTCGCCTGAGAGAAG 59.501 66.667 0.00 0.00 46.69 2.85
715 724 2.739996 AGGAATGGCCTCGCCTGAG 61.740 63.158 3.32 0.00 46.97 3.35
716 725 2.688666 AGGAATGGCCTCGCCTGA 60.689 61.111 3.32 0.00 46.97 3.86
724 733 4.019174 TGAATGAAAGAGAAGGAATGGCC 58.981 43.478 0.00 0.00 0.00 5.36
725 734 4.704057 AGTGAATGAAAGAGAAGGAATGGC 59.296 41.667 0.00 0.00 0.00 4.40
726 735 5.942236 TGAGTGAATGAAAGAGAAGGAATGG 59.058 40.000 0.00 0.00 0.00 3.16
727 736 7.444629 TTGAGTGAATGAAAGAGAAGGAATG 57.555 36.000 0.00 0.00 0.00 2.67
728 737 8.469309 TTTTGAGTGAATGAAAGAGAAGGAAT 57.531 30.769 0.00 0.00 0.00 3.01
729 738 7.880160 TTTTGAGTGAATGAAAGAGAAGGAA 57.120 32.000 0.00 0.00 0.00 3.36
730 739 7.095060 CGATTTTGAGTGAATGAAAGAGAAGGA 60.095 37.037 0.00 0.00 0.00 3.36
731 740 7.020010 CGATTTTGAGTGAATGAAAGAGAAGG 58.980 38.462 0.00 0.00 0.00 3.46
732 741 7.743838 GTCGATTTTGAGTGAATGAAAGAGAAG 59.256 37.037 0.00 0.00 0.00 2.85
733 742 7.442364 AGTCGATTTTGAGTGAATGAAAGAGAA 59.558 33.333 0.00 0.00 0.00 2.87
734 743 6.931281 AGTCGATTTTGAGTGAATGAAAGAGA 59.069 34.615 0.00 0.00 0.00 3.10
735 744 7.095481 TGAGTCGATTTTGAGTGAATGAAAGAG 60.095 37.037 0.00 0.00 0.00 2.85
736 745 6.705825 TGAGTCGATTTTGAGTGAATGAAAGA 59.294 34.615 0.00 0.00 0.00 2.52
737 746 6.794158 GTGAGTCGATTTTGAGTGAATGAAAG 59.206 38.462 0.00 0.00 0.00 2.62
738 747 6.483307 AGTGAGTCGATTTTGAGTGAATGAAA 59.517 34.615 0.00 0.00 0.00 2.69
739 748 5.991606 AGTGAGTCGATTTTGAGTGAATGAA 59.008 36.000 0.00 0.00 0.00 2.57
740 749 5.541845 AGTGAGTCGATTTTGAGTGAATGA 58.458 37.500 0.00 0.00 0.00 2.57
741 750 5.852738 AGTGAGTCGATTTTGAGTGAATG 57.147 39.130 0.00 0.00 0.00 2.67
742 751 7.962964 TTAAGTGAGTCGATTTTGAGTGAAT 57.037 32.000 0.00 0.00 0.00 2.57
743 752 7.780008 TTTAAGTGAGTCGATTTTGAGTGAA 57.220 32.000 0.00 0.00 0.00 3.18
744 753 7.494625 AGTTTTAAGTGAGTCGATTTTGAGTGA 59.505 33.333 0.00 0.00 0.00 3.41
745 754 7.584123 CAGTTTTAAGTGAGTCGATTTTGAGTG 59.416 37.037 0.00 0.00 0.00 3.51
746 755 7.494625 TCAGTTTTAAGTGAGTCGATTTTGAGT 59.505 33.333 0.00 0.00 33.62 3.41
747 756 7.851508 TCAGTTTTAAGTGAGTCGATTTTGAG 58.148 34.615 0.00 0.00 33.62 3.02
748 757 7.780008 TCAGTTTTAAGTGAGTCGATTTTGA 57.220 32.000 0.00 0.00 33.62 2.69
749 758 8.835467 TTTCAGTTTTAAGTGAGTCGATTTTG 57.165 30.769 0.00 0.00 39.36 2.44
752 761 9.665264 GAATTTTCAGTTTTAAGTGAGTCGATT 57.335 29.630 0.00 0.00 39.36 3.34
753 762 8.836413 TGAATTTTCAGTTTTAAGTGAGTCGAT 58.164 29.630 0.00 0.00 39.36 3.59
754 763 8.203937 TGAATTTTCAGTTTTAAGTGAGTCGA 57.796 30.769 0.77 0.00 39.36 4.20
778 787 5.641209 AGTTTAGCTACATTTCAGTCAGCTG 59.359 40.000 7.63 7.63 42.34 4.24
779 788 5.641209 CAGTTTAGCTACATTTCAGTCAGCT 59.359 40.000 0.00 0.00 44.43 4.24
780 789 5.639506 TCAGTTTAGCTACATTTCAGTCAGC 59.360 40.000 0.00 0.00 0.00 4.26
781 790 7.840342 ATCAGTTTAGCTACATTTCAGTCAG 57.160 36.000 0.00 0.00 0.00 3.51
782 791 9.719355 TTAATCAGTTTAGCTACATTTCAGTCA 57.281 29.630 0.00 0.00 0.00 3.41
789 798 9.503427 GCGAAAATTAATCAGTTTAGCTACATT 57.497 29.630 0.00 0.00 32.29 2.71
790 799 8.129211 GGCGAAAATTAATCAGTTTAGCTACAT 58.871 33.333 12.78 0.00 34.51 2.29
791 800 7.469260 GGCGAAAATTAATCAGTTTAGCTACA 58.531 34.615 12.78 0.00 34.51 2.74
792 801 6.627671 CGGCGAAAATTAATCAGTTTAGCTAC 59.372 38.462 0.00 0.00 34.51 3.58
793 802 6.314400 ACGGCGAAAATTAATCAGTTTAGCTA 59.686 34.615 16.62 0.00 34.51 3.32
794 803 5.123344 ACGGCGAAAATTAATCAGTTTAGCT 59.877 36.000 16.62 0.00 34.51 3.32
795 804 5.329493 ACGGCGAAAATTAATCAGTTTAGC 58.671 37.500 16.62 7.34 33.67 3.09
798 807 8.832521 TCATATACGGCGAAAATTAATCAGTTT 58.167 29.630 16.62 0.00 0.00 2.66
799 808 8.373048 TCATATACGGCGAAAATTAATCAGTT 57.627 30.769 16.62 0.00 0.00 3.16
800 809 7.360101 GCTCATATACGGCGAAAATTAATCAGT 60.360 37.037 16.62 0.00 0.00 3.41
801 810 6.955963 GCTCATATACGGCGAAAATTAATCAG 59.044 38.462 16.62 0.00 0.00 2.90
802 811 6.827641 GCTCATATACGGCGAAAATTAATCA 58.172 36.000 16.62 0.00 0.00 2.57
816 825 0.109086 CTGGCCTCCGCTCATATACG 60.109 60.000 3.32 0.00 34.44 3.06
817 826 0.390472 GCTGGCCTCCGCTCATATAC 60.390 60.000 3.32 0.00 34.44 1.47
818 827 1.877576 CGCTGGCCTCCGCTCATATA 61.878 60.000 3.32 0.00 34.44 0.86
819 828 2.746359 GCTGGCCTCCGCTCATAT 59.254 61.111 3.32 0.00 34.44 1.78
820 829 3.916544 CGCTGGCCTCCGCTCATA 61.917 66.667 3.32 0.00 34.44 2.15
826 835 3.740128 AACTATGCGCTGGCCTCCG 62.740 63.158 9.73 7.87 38.85 4.63
827 836 2.182842 CAACTATGCGCTGGCCTCC 61.183 63.158 9.73 0.00 38.85 4.30
828 837 1.153369 TCAACTATGCGCTGGCCTC 60.153 57.895 9.73 0.00 38.85 4.70
829 838 1.153289 CTCAACTATGCGCTGGCCT 60.153 57.895 9.73 0.00 38.85 5.19
830 839 0.533755 ATCTCAACTATGCGCTGGCC 60.534 55.000 9.73 0.00 38.85 5.36
831 840 1.262683 GAATCTCAACTATGCGCTGGC 59.737 52.381 9.73 0.00 40.52 4.85
832 841 1.524355 CGAATCTCAACTATGCGCTGG 59.476 52.381 9.73 0.61 0.00 4.85
833 842 2.463876 TCGAATCTCAACTATGCGCTG 58.536 47.619 9.73 0.00 0.00 5.18
834 843 2.359214 TCTCGAATCTCAACTATGCGCT 59.641 45.455 9.73 0.00 0.00 5.92
835 844 2.723658 CTCTCGAATCTCAACTATGCGC 59.276 50.000 0.00 0.00 0.00 6.09
836 845 3.304257 CCTCTCGAATCTCAACTATGCG 58.696 50.000 0.00 0.00 0.00 4.73
837 846 3.319405 TCCCTCTCGAATCTCAACTATGC 59.681 47.826 0.00 0.00 0.00 3.14
838 847 4.555708 CGTCCCTCTCGAATCTCAACTATG 60.556 50.000 0.00 0.00 0.00 2.23
839 848 3.566322 CGTCCCTCTCGAATCTCAACTAT 59.434 47.826 0.00 0.00 0.00 2.12
840 849 2.943690 CGTCCCTCTCGAATCTCAACTA 59.056 50.000 0.00 0.00 0.00 2.24
841 850 1.746220 CGTCCCTCTCGAATCTCAACT 59.254 52.381 0.00 0.00 0.00 3.16
842 851 1.743958 TCGTCCCTCTCGAATCTCAAC 59.256 52.381 0.00 0.00 34.36 3.18
843 852 2.017782 CTCGTCCCTCTCGAATCTCAA 58.982 52.381 0.00 0.00 36.89 3.02
844 853 1.209747 TCTCGTCCCTCTCGAATCTCA 59.790 52.381 0.00 0.00 36.89 3.27
845 854 1.871039 CTCTCGTCCCTCTCGAATCTC 59.129 57.143 0.00 0.00 36.89 2.75
846 855 1.476110 CCTCTCGTCCCTCTCGAATCT 60.476 57.143 0.00 0.00 36.89 2.40
847 856 0.948678 CCTCTCGTCCCTCTCGAATC 59.051 60.000 0.00 0.00 36.89 2.52
848 857 0.466555 CCCTCTCGTCCCTCTCGAAT 60.467 60.000 0.00 0.00 36.89 3.34
849 858 1.077644 CCCTCTCGTCCCTCTCGAA 60.078 63.158 0.00 0.00 36.89 3.71
850 859 2.590645 CCCTCTCGTCCCTCTCGA 59.409 66.667 0.00 0.00 35.96 4.04
851 860 2.517402 CCCCTCTCGTCCCTCTCG 60.517 72.222 0.00 0.00 0.00 4.04
852 861 2.835895 GCCCCTCTCGTCCCTCTC 60.836 72.222 0.00 0.00 0.00 3.20
853 862 4.824515 CGCCCCTCTCGTCCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
854 863 4.816984 TCGCCCCTCTCGTCCCTC 62.817 72.222 0.00 0.00 0.00 4.30
855 864 4.377760 TTCGCCCCTCTCGTCCCT 62.378 66.667 0.00 0.00 0.00 4.20
856 865 3.839432 CTTCGCCCCTCTCGTCCC 61.839 72.222 0.00 0.00 0.00 4.46
857 866 4.516195 GCTTCGCCCCTCTCGTCC 62.516 72.222 0.00 0.00 0.00 4.79
858 867 4.516195 GGCTTCGCCCCTCTCGTC 62.516 72.222 0.00 0.00 44.06 4.20
867 876 2.359478 TTCCCTTTCGGCTTCGCC 60.359 61.111 0.00 0.00 46.75 5.54
868 877 2.868196 GTTCCCTTTCGGCTTCGC 59.132 61.111 0.00 0.00 0.00 4.70
869 878 1.623973 GACGTTCCCTTTCGGCTTCG 61.624 60.000 0.00 0.00 31.86 3.79
870 879 1.296755 GGACGTTCCCTTTCGGCTTC 61.297 60.000 0.00 0.00 35.25 3.86
871 880 1.302271 GGACGTTCCCTTTCGGCTT 60.302 57.895 0.00 0.00 35.25 4.35
872 881 2.346365 GGACGTTCCCTTTCGGCT 59.654 61.111 0.00 0.00 35.25 5.52
873 882 3.116531 CGGACGTTCCCTTTCGGC 61.117 66.667 0.00 0.00 31.13 5.54
882 891 0.857287 GTTGGTTGACTCGGACGTTC 59.143 55.000 0.00 0.00 0.00 3.95
924 933 4.966787 TTTGGGTGGGCCGAGCAC 62.967 66.667 19.10 10.58 34.97 4.40
925 934 4.211330 TTTTGGGTGGGCCGAGCA 62.211 61.111 19.10 2.24 34.97 4.26
926 935 3.680786 GTTTTGGGTGGGCCGAGC 61.681 66.667 8.66 8.66 34.97 5.03
927 936 2.989253 GGTTTTGGGTGGGCCGAG 60.989 66.667 0.00 0.00 34.97 4.63
928 937 4.607025 GGGTTTTGGGTGGGCCGA 62.607 66.667 0.00 0.00 34.97 5.54
933 942 4.924187 TGGGCGGGTTTTGGGTGG 62.924 66.667 0.00 0.00 0.00 4.61
934 943 2.840102 TTGGGCGGGTTTTGGGTG 60.840 61.111 0.00 0.00 0.00 4.61
935 944 2.840572 GTTGGGCGGGTTTTGGGT 60.841 61.111 0.00 0.00 0.00 4.51
936 945 3.621805 GGTTGGGCGGGTTTTGGG 61.622 66.667 0.00 0.00 0.00 4.12
991 1006 2.356382 CCGGCGGCTTCATTATTGTTTA 59.644 45.455 15.42 0.00 0.00 2.01
992 1007 1.134175 CCGGCGGCTTCATTATTGTTT 59.866 47.619 15.42 0.00 0.00 2.83
1052 1067 4.527583 GGAGCAGGCAGGAGAGCG 62.528 72.222 0.00 0.00 34.64 5.03
1053 1068 3.082701 AGGAGCAGGCAGGAGAGC 61.083 66.667 0.00 0.00 0.00 4.09
1054 1069 2.433994 GGAGGAGCAGGCAGGAGAG 61.434 68.421 0.00 0.00 0.00 3.20
1091 1106 0.340208 GGAGGAGGAGGAAGGGAAGA 59.660 60.000 0.00 0.00 0.00 2.87
1093 1108 0.340208 GAGGAGGAGGAGGAAGGGAA 59.660 60.000 0.00 0.00 0.00 3.97
1096 1111 1.456705 CGGAGGAGGAGGAGGAAGG 60.457 68.421 0.00 0.00 0.00 3.46
1097 1112 2.131067 GCGGAGGAGGAGGAGGAAG 61.131 68.421 0.00 0.00 0.00 3.46
1098 1113 2.042843 GCGGAGGAGGAGGAGGAA 60.043 66.667 0.00 0.00 0.00 3.36
1099 1114 4.144727 GGCGGAGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
2121 2155 0.033601 TGAAACAGTGTGGGGCAAGT 60.034 50.000 0.00 0.00 0.00 3.16
2126 2160 1.039068 TGCAATGAAACAGTGTGGGG 58.961 50.000 0.00 0.00 31.72 4.96
2223 2306 9.834678 TGGGTCATCTATCTAGTACTAGTAGTA 57.165 37.037 25.58 15.22 34.84 1.82
2224 2307 8.739108 TGGGTCATCTATCTAGTACTAGTAGT 57.261 38.462 25.58 14.57 34.84 2.73
2243 2326 2.164338 GCTTTTATCGGGTTTGGGTCA 58.836 47.619 0.00 0.00 0.00 4.02
2244 2327 2.094906 GTGCTTTTATCGGGTTTGGGTC 60.095 50.000 0.00 0.00 0.00 4.46
2302 2433 8.686334 GTGGTAAAATAATGATGGTGAATGAGT 58.314 33.333 0.00 0.00 0.00 3.41
2341 2472 9.687210 CCATATACGTAGCAACTAGAAACAATA 57.313 33.333 0.08 0.00 0.00 1.90
2354 2485 5.465390 GCACTTGATTTCCATATACGTAGCA 59.535 40.000 0.08 0.00 0.00 3.49
2360 2491 5.049129 GCCTCTGCACTTGATTTCCATATAC 60.049 44.000 0.00 0.00 37.47 1.47
2426 2557 4.642885 AGAGACATGAGGTACTGCTAACTC 59.357 45.833 0.00 0.00 41.55 3.01
2499 2645 6.714356 TGGTGATGTTTCAATCAACTCATGTA 59.286 34.615 4.06 0.00 43.45 2.29
2802 2964 0.391528 TGGACACAGCATGACCGATG 60.392 55.000 0.00 0.00 45.21 3.84
2943 3107 3.570125 GCTTAAAGGCTGTTGTCTTCCTT 59.430 43.478 0.00 0.00 37.09 3.36
2944 3108 3.149981 GCTTAAAGGCTGTTGTCTTCCT 58.850 45.455 0.00 0.00 37.09 3.36
2983 3147 3.325135 GGTAGGACCACAGGAGATATTGG 59.675 52.174 0.00 0.00 38.42 3.16
3041 3205 3.377172 GGTGGTGTTTGGCACTATGATAC 59.623 47.826 0.00 0.00 46.86 2.24
3166 3331 4.666412 TGGTTTGGGAAAGACATATCCA 57.334 40.909 0.00 0.00 37.46 3.41
3174 3339 2.151502 TGCTGTTGGTTTGGGAAAGA 57.848 45.000 0.00 0.00 0.00 2.52
3178 3343 1.145945 TGGTATGCTGTTGGTTTGGGA 59.854 47.619 0.00 0.00 0.00 4.37
3185 3350 2.632377 CACTAGGTGGTATGCTGTTGG 58.368 52.381 0.00 0.00 0.00 3.77
3271 3436 6.104439 CAGTCATGTAATCTGCTCAGAAAC 57.896 41.667 3.47 6.29 41.36 2.78
3431 3693 1.269517 GGCTCGCAGATTCTAGACAGG 60.270 57.143 0.00 0.00 33.89 4.00
3446 3708 2.932614 CTCAGAAATAACACCAGGCTCG 59.067 50.000 0.00 0.00 0.00 5.03
3454 3716 4.211374 ACGCTCAACACTCAGAAATAACAC 59.789 41.667 0.00 0.00 0.00 3.32
3463 3725 1.004277 GACCGACGCTCAACACTCAG 61.004 60.000 0.00 0.00 0.00 3.35
3475 3737 1.121240 GATTCTACATGCGACCGACG 58.879 55.000 0.00 0.00 45.66 5.12
3487 3749 6.012658 AGAGAGCATCGATCTTGATTCTAC 57.987 41.667 0.00 0.00 42.67 2.59
3491 3753 6.596888 TGAAAAAGAGAGCATCGATCTTGATT 59.403 34.615 0.00 0.00 42.67 2.57
3495 3757 5.486526 AGTGAAAAAGAGAGCATCGATCTT 58.513 37.500 0.00 0.00 42.67 2.40
3524 3787 6.335471 TCTAGTTCTGTTATGTTTCGGTGA 57.665 37.500 0.00 0.00 0.00 4.02
3525 3788 5.577164 CCTCTAGTTCTGTTATGTTTCGGTG 59.423 44.000 0.00 0.00 0.00 4.94
3548 3811 5.701290 GCCACACTTCTATATGATTGTACCC 59.299 44.000 0.00 0.00 0.00 3.69
3556 3819 2.821546 GTGCGCCACACTTCTATATGA 58.178 47.619 4.18 0.00 46.41 2.15
3568 3831 2.484264 AGATTTACAAGAAGTGCGCCAC 59.516 45.455 4.18 3.02 34.10 5.01
3569 3832 2.742053 GAGATTTACAAGAAGTGCGCCA 59.258 45.455 4.18 0.00 0.00 5.69
3570 3833 2.742053 TGAGATTTACAAGAAGTGCGCC 59.258 45.455 4.18 0.00 0.00 6.53
3571 3834 4.606457 ATGAGATTTACAAGAAGTGCGC 57.394 40.909 0.00 0.00 0.00 6.09
3572 3835 7.591057 TGAAAAATGAGATTTACAAGAAGTGCG 59.409 33.333 0.00 0.00 0.00 5.34
3573 3836 8.801715 TGAAAAATGAGATTTACAAGAAGTGC 57.198 30.769 0.00 0.00 0.00 4.40
3575 3838 9.918630 CCATGAAAAATGAGATTTACAAGAAGT 57.081 29.630 0.00 0.00 0.00 3.01
3577 3840 9.912634 GTCCATGAAAAATGAGATTTACAAGAA 57.087 29.630 0.00 0.00 0.00 2.52
3578 3841 9.076781 TGTCCATGAAAAATGAGATTTACAAGA 57.923 29.630 0.00 0.00 0.00 3.02
3579 3842 9.695526 TTGTCCATGAAAAATGAGATTTACAAG 57.304 29.630 0.00 0.00 0.00 3.16
3580 3843 9.695526 CTTGTCCATGAAAAATGAGATTTACAA 57.304 29.630 0.00 0.00 0.00 2.41
3581 3844 9.076781 TCTTGTCCATGAAAAATGAGATTTACA 57.923 29.630 0.00 0.00 0.00 2.41
3582 3845 9.346725 GTCTTGTCCATGAAAAATGAGATTTAC 57.653 33.333 0.00 0.00 0.00 2.01
3583 3846 9.300681 AGTCTTGTCCATGAAAAATGAGATTTA 57.699 29.630 0.00 0.00 0.00 1.40
3584 3847 8.186709 AGTCTTGTCCATGAAAAATGAGATTT 57.813 30.769 0.00 0.00 0.00 2.17
3585 3848 7.771927 AGTCTTGTCCATGAAAAATGAGATT 57.228 32.000 0.00 0.00 0.00 2.40
3586 3849 7.066766 GCTAGTCTTGTCCATGAAAAATGAGAT 59.933 37.037 0.00 0.00 0.00 2.75
3587 3850 6.372659 GCTAGTCTTGTCCATGAAAAATGAGA 59.627 38.462 0.00 0.00 0.00 3.27
3588 3851 6.149973 TGCTAGTCTTGTCCATGAAAAATGAG 59.850 38.462 0.00 0.00 0.00 2.90
3589 3852 6.003326 TGCTAGTCTTGTCCATGAAAAATGA 58.997 36.000 0.00 0.00 0.00 2.57
3590 3853 6.258230 TGCTAGTCTTGTCCATGAAAAATG 57.742 37.500 0.00 0.00 0.00 2.32
3591 3854 7.472334 AATGCTAGTCTTGTCCATGAAAAAT 57.528 32.000 0.00 0.00 0.00 1.82
3592 3855 6.899393 AATGCTAGTCTTGTCCATGAAAAA 57.101 33.333 0.00 0.00 0.00 1.94
3593 3856 6.265196 ACAAATGCTAGTCTTGTCCATGAAAA 59.735 34.615 0.00 0.00 0.00 2.29
3594 3857 5.769662 ACAAATGCTAGTCTTGTCCATGAAA 59.230 36.000 0.00 0.00 0.00 2.69
3595 3858 5.316167 ACAAATGCTAGTCTTGTCCATGAA 58.684 37.500 0.00 0.00 0.00 2.57
3596 3859 4.910195 ACAAATGCTAGTCTTGTCCATGA 58.090 39.130 0.00 0.00 0.00 3.07
3597 3860 5.633830 AACAAATGCTAGTCTTGTCCATG 57.366 39.130 6.67 0.00 32.21 3.66
3598 3861 5.183904 GGAAACAAATGCTAGTCTTGTCCAT 59.816 40.000 6.67 0.00 32.21 3.41
3599 3862 4.518970 GGAAACAAATGCTAGTCTTGTCCA 59.481 41.667 6.67 0.00 32.21 4.02
3600 3863 4.518970 TGGAAACAAATGCTAGTCTTGTCC 59.481 41.667 6.67 5.94 37.44 4.02
3601 3864 5.008613 TGTGGAAACAAATGCTAGTCTTGTC 59.991 40.000 6.67 0.00 46.06 3.18
3602 3865 4.887071 TGTGGAAACAAATGCTAGTCTTGT 59.113 37.500 0.00 0.00 46.06 3.16
3603 3866 5.437289 TGTGGAAACAAATGCTAGTCTTG 57.563 39.130 0.00 0.00 46.06 3.02
3604 3867 5.010012 CCTTGTGGAAACAAATGCTAGTCTT 59.990 40.000 0.00 0.00 46.06 3.01
3605 3868 4.520492 CCTTGTGGAAACAAATGCTAGTCT 59.480 41.667 0.00 0.00 46.06 3.24
3606 3869 4.798574 CCTTGTGGAAACAAATGCTAGTC 58.201 43.478 0.00 0.00 46.06 2.59
3607 3870 3.005791 GCCTTGTGGAAACAAATGCTAGT 59.994 43.478 0.00 0.00 46.06 2.57
3608 3871 3.005684 TGCCTTGTGGAAACAAATGCTAG 59.994 43.478 11.61 0.00 46.06 3.42
3609 3872 2.961741 TGCCTTGTGGAAACAAATGCTA 59.038 40.909 11.61 0.75 46.06 3.49
3610 3873 1.761784 TGCCTTGTGGAAACAAATGCT 59.238 42.857 11.61 0.00 46.06 3.79
3611 3874 2.237393 TGCCTTGTGGAAACAAATGC 57.763 45.000 6.05 6.05 46.06 3.56
3612 3875 8.721019 ATTATTATGCCTTGTGGAAACAAATG 57.279 30.769 0.00 0.00 46.06 2.32
3667 3931 8.451908 AGTACAACTGATAAACTTTTCAAGCT 57.548 30.769 0.00 0.00 0.00 3.74
3688 3952 5.731591 AGCTTGGTGAAACTATACCAGTAC 58.268 41.667 0.00 0.00 46.74 2.73
3691 3955 5.003804 ACAAGCTTGGTGAAACTATACCAG 58.996 41.667 29.18 0.00 46.74 4.00
3692 3956 4.980573 ACAAGCTTGGTGAAACTATACCA 58.019 39.130 29.18 0.00 44.79 3.25
3693 3957 5.935789 TGTACAAGCTTGGTGAAACTATACC 59.064 40.000 29.18 6.14 36.74 2.73
3694 3958 7.611213 ATGTACAAGCTTGGTGAAACTATAC 57.389 36.000 29.18 18.26 36.74 1.47
3695 3959 9.325198 CATATGTACAAGCTTGGTGAAACTATA 57.675 33.333 29.18 15.15 36.74 1.31
3706 3975 6.051074 TCCAGATCACATATGTACAAGCTTG 58.949 40.000 24.84 24.84 0.00 4.01
3718 4016 6.491745 GGAGTGTAGAGAATCCAGATCACATA 59.508 42.308 0.00 0.00 33.66 2.29
3720 4018 4.646945 GGAGTGTAGAGAATCCAGATCACA 59.353 45.833 0.00 0.00 33.66 3.58
3728 4055 4.162320 TGGATTGTGGAGTGTAGAGAATCC 59.838 45.833 0.00 0.00 38.47 3.01
3735 4062 8.356657 TGTTTTTAAATGGATTGTGGAGTGTAG 58.643 33.333 0.00 0.00 0.00 2.74
3736 4063 8.239038 TGTTTTTAAATGGATTGTGGAGTGTA 57.761 30.769 0.00 0.00 0.00 2.90
3756 4083 9.771915 CACTGACTTATTTTTGCAAAATGTTTT 57.228 25.926 24.39 10.01 0.00 2.43
3762 4089 6.105333 AGTGCACTGACTTATTTTTGCAAAA 58.895 32.000 20.97 20.46 41.37 2.44
3763 4090 5.659463 AGTGCACTGACTTATTTTTGCAAA 58.341 33.333 20.97 8.05 41.37 3.68
3764 4091 5.067674 AGAGTGCACTGACTTATTTTTGCAA 59.932 36.000 27.27 0.00 41.37 4.08
3766 4093 5.113502 AGAGTGCACTGACTTATTTTTGC 57.886 39.130 27.27 4.52 0.00 3.68
3767 4094 6.963796 AGAAGAGTGCACTGACTTATTTTTG 58.036 36.000 27.27 0.00 0.00 2.44
3768 4095 7.573968 AAGAAGAGTGCACTGACTTATTTTT 57.426 32.000 27.27 11.36 0.00 1.94
3770 4097 6.514048 GCAAAGAAGAGTGCACTGACTTATTT 60.514 38.462 27.27 25.30 40.58 1.40
3771 4098 5.049129 GCAAAGAAGAGTGCACTGACTTATT 60.049 40.000 27.27 21.28 40.58 1.40
3773 4100 3.809832 GCAAAGAAGAGTGCACTGACTTA 59.190 43.478 27.27 0.00 40.58 2.24
3774 4101 2.615912 GCAAAGAAGAGTGCACTGACTT 59.384 45.455 27.27 21.80 40.58 3.01
3776 4103 1.265365 GGCAAAGAAGAGTGCACTGAC 59.735 52.381 27.27 11.18 42.74 3.51
3777 4104 1.134128 TGGCAAAGAAGAGTGCACTGA 60.134 47.619 27.27 0.00 42.74 3.41
3778 4105 1.311859 TGGCAAAGAAGAGTGCACTG 58.688 50.000 27.27 10.05 42.74 3.66
3779 4106 2.057137 TTGGCAAAGAAGAGTGCACT 57.943 45.000 21.88 21.88 42.74 4.40
3780 4107 2.352127 GGATTGGCAAAGAAGAGTGCAC 60.352 50.000 9.40 9.40 42.74 4.57
3781 4108 1.888512 GGATTGGCAAAGAAGAGTGCA 59.111 47.619 3.01 0.00 42.74 4.57
3782 4109 1.888512 TGGATTGGCAAAGAAGAGTGC 59.111 47.619 3.01 0.00 40.14 4.40
3783 4110 6.769822 ACTATATGGATTGGCAAAGAAGAGTG 59.230 38.462 3.01 0.00 0.00 3.51
3784 4111 6.769822 CACTATATGGATTGGCAAAGAAGAGT 59.230 38.462 3.01 0.00 0.00 3.24
3785 4112 6.293845 GCACTATATGGATTGGCAAAGAAGAG 60.294 42.308 3.01 0.00 0.00 2.85
3786 4113 5.532406 GCACTATATGGATTGGCAAAGAAGA 59.468 40.000 3.01 0.00 0.00 2.87
3787 4114 5.300034 TGCACTATATGGATTGGCAAAGAAG 59.700 40.000 3.01 0.00 0.00 2.85
3795 4124 9.288576 TCTTATTTCTTGCACTATATGGATTGG 57.711 33.333 0.00 0.00 0.00 3.16
3806 4135 9.920946 TTATAGGGAATTCTTATTTCTTGCACT 57.079 29.630 5.23 0.00 0.00 4.40
3841 4170 3.132111 GCAAGACCAACCTGGAAAGAAAA 59.868 43.478 0.00 0.00 40.96 2.29
3844 4173 1.214175 TGCAAGACCAACCTGGAAAGA 59.786 47.619 0.00 0.00 40.96 2.52
3845 4174 1.691196 TGCAAGACCAACCTGGAAAG 58.309 50.000 0.00 0.00 40.96 2.62
3846 4175 2.238521 GATGCAAGACCAACCTGGAAA 58.761 47.619 0.00 0.00 40.96 3.13
3891 4220 1.819288 CTTCTCTGAGCGTCCCTTACA 59.181 52.381 0.00 0.00 0.00 2.41
3900 4229 4.981674 GGAAGATTGATACTTCTCTGAGCG 59.018 45.833 0.00 0.00 42.07 5.03
3908 4237 5.175859 TCACGTTGGGAAGATTGATACTTC 58.824 41.667 0.00 0.00 41.79 3.01
3972 4301 1.821061 CTTCCGTGGAGAGGTGCAGT 61.821 60.000 0.00 0.00 0.00 4.40
3987 4316 1.448717 GAGCCGGAGTTGAGCTTCC 60.449 63.158 5.05 0.00 36.87 3.46
4041 4370 1.067821 GCTTTGGGATCTCTCGACGAT 59.932 52.381 0.00 0.00 0.00 3.73
4044 4373 4.762765 TCTATAGCTTTGGGATCTCTCGAC 59.237 45.833 0.00 0.00 0.00 4.20
4047 4376 7.096551 GTGATTCTATAGCTTTGGGATCTCTC 58.903 42.308 9.63 0.00 0.00 3.20
4055 4384 3.466836 TGCGGTGATTCTATAGCTTTGG 58.533 45.455 0.00 0.00 0.00 3.28
4059 4388 4.607293 TTGATGCGGTGATTCTATAGCT 57.393 40.909 0.00 0.00 0.00 3.32
4060 4389 6.368791 TGTTATTGATGCGGTGATTCTATAGC 59.631 38.462 0.00 0.00 0.00 2.97
4061 4390 7.889589 TGTTATTGATGCGGTGATTCTATAG 57.110 36.000 0.00 0.00 0.00 1.31
4062 4391 8.846943 AATGTTATTGATGCGGTGATTCTATA 57.153 30.769 0.00 0.00 0.00 1.31
4063 4392 7.750229 AATGTTATTGATGCGGTGATTCTAT 57.250 32.000 0.00 0.00 0.00 1.98
4064 4393 8.846943 ATAATGTTATTGATGCGGTGATTCTA 57.153 30.769 0.00 0.00 0.00 2.10
4065 4394 7.663081 AGATAATGTTATTGATGCGGTGATTCT 59.337 33.333 0.00 0.00 0.00 2.40
4066 4395 7.747799 CAGATAATGTTATTGATGCGGTGATTC 59.252 37.037 0.00 0.00 0.00 2.52
4067 4396 7.445096 TCAGATAATGTTATTGATGCGGTGATT 59.555 33.333 0.00 0.00 0.00 2.57
4068 4397 6.936335 TCAGATAATGTTATTGATGCGGTGAT 59.064 34.615 0.00 0.00 0.00 3.06
4069 4398 6.287525 TCAGATAATGTTATTGATGCGGTGA 58.712 36.000 0.00 0.00 0.00 4.02
4070 4399 6.544038 TCAGATAATGTTATTGATGCGGTG 57.456 37.500 0.00 0.00 0.00 4.94
4071 4400 7.750229 AATCAGATAATGTTATTGATGCGGT 57.250 32.000 9.26 0.00 0.00 5.68
4072 4401 7.061441 GCAAATCAGATAATGTTATTGATGCGG 59.939 37.037 9.26 5.92 0.00 5.69
4073 4402 7.806487 AGCAAATCAGATAATGTTATTGATGCG 59.194 33.333 0.00 0.00 31.22 4.73
4088 4417 6.554982 TGGTATCTACACCTAGCAAATCAGAT 59.445 38.462 0.00 0.00 39.50 2.90
4098 4427 9.712305 CCAAAGAATAATGGTATCTACACCTAG 57.288 37.037 0.00 0.00 39.50 3.02
4102 4431 7.990886 TGTCCCAAAGAATAATGGTATCTACAC 59.009 37.037 0.00 0.00 34.79 2.90
4184 4517 1.860399 GCGGTATAGTGAGCGACAGTG 60.860 57.143 0.00 0.00 42.83 3.66
4185 4518 0.381089 GCGGTATAGTGAGCGACAGT 59.619 55.000 0.00 0.00 42.83 3.55
4186 4519 0.380733 TGCGGTATAGTGAGCGACAG 59.619 55.000 0.00 0.00 42.83 3.51
4210 4543 2.419667 ACTTGTACCGGAATCCGTTTG 58.580 47.619 21.12 7.91 46.80 2.93
4212 4545 2.845363 AACTTGTACCGGAATCCGTT 57.155 45.000 21.12 9.28 46.80 4.44
4213 4546 2.845363 AAACTTGTACCGGAATCCGT 57.155 45.000 21.12 11.09 46.80 4.69
4215 4548 3.869832 GAGCTAAACTTGTACCGGAATCC 59.130 47.826 9.46 0.00 0.00 3.01
4216 4549 4.501071 TGAGCTAAACTTGTACCGGAATC 58.499 43.478 9.46 0.00 0.00 2.52
4217 4550 4.546829 TGAGCTAAACTTGTACCGGAAT 57.453 40.909 9.46 0.00 0.00 3.01
4229 4562 4.027572 TGCACAACAGTTTGAGCTAAAC 57.972 40.909 8.02 9.46 46.25 2.01
4248 4581 4.009675 TCTCCCAAATGTACATCACTTGC 58.990 43.478 9.23 0.00 32.72 4.01
4264 4597 1.178276 GAGCTCGTTCTCTTCTCCCA 58.822 55.000 0.00 0.00 0.00 4.37
4283 4617 7.254421 GCTTTATTCCAAGTTTCCAACAAACAG 60.254 37.037 0.40 0.00 32.81 3.16
4287 4621 6.097554 TCAGCTTTATTCCAAGTTTCCAACAA 59.902 34.615 0.00 0.00 0.00 2.83
4371 4706 9.621629 TTTGGAACTACTGAATGAGAAAAAGTA 57.378 29.630 0.00 0.00 0.00 2.24
4372 4707 8.519799 TTTGGAACTACTGAATGAGAAAAAGT 57.480 30.769 0.00 0.00 0.00 2.66
4373 4708 7.592903 GCTTTGGAACTACTGAATGAGAAAAAG 59.407 37.037 0.00 0.00 0.00 2.27
4395 4730 6.830838 CAGGAAGGAAGTTTATATCCTGCTTT 59.169 38.462 6.68 0.00 45.33 3.51
4403 4738 7.611855 CCACACTTTCAGGAAGGAAGTTTATAT 59.388 37.037 0.00 0.00 39.79 0.86
4458 4793 8.255905 GGATGGAATTTCTGAACTGAATTTGAT 58.744 33.333 0.00 0.00 0.00 2.57
4479 4814 9.369904 CAATTTGGTTTTAGAAAGTATGGATGG 57.630 33.333 0.00 0.00 0.00 3.51
4494 4829 7.401955 TGAAAGGAAATTGCAATTTGGTTTT 57.598 28.000 35.57 28.55 38.64 2.43
4551 5548 8.389779 TCACAAGCAGTCTTATATCACAAAAA 57.610 30.769 0.00 0.00 0.00 1.94
4614 5611 7.605449 TCAAATCATCACAAGGGAATCTTTTC 58.395 34.615 0.00 0.00 32.41 2.29
4677 5702 8.783093 CTGGTTTCAGACATGTTCTAAAACATA 58.217 33.333 18.06 10.35 46.45 2.29
4679 5704 6.601613 ACTGGTTTCAGACATGTTCTAAAACA 59.398 34.615 18.06 16.19 42.44 2.83
4680 5705 7.027778 ACTGGTTTCAGACATGTTCTAAAAC 57.972 36.000 0.00 7.53 40.59 2.43
4681 5706 6.826231 TGACTGGTTTCAGACATGTTCTAAAA 59.174 34.615 0.00 0.00 43.49 1.52
4682 5707 6.260050 GTGACTGGTTTCAGACATGTTCTAAA 59.740 38.462 0.00 0.00 44.57 1.85
4683 5708 5.758296 GTGACTGGTTTCAGACATGTTCTAA 59.242 40.000 0.00 0.00 44.57 2.10
4684 5709 5.163353 TGTGACTGGTTTCAGACATGTTCTA 60.163 40.000 0.00 0.00 44.57 2.10
4685 5710 4.130118 GTGACTGGTTTCAGACATGTTCT 58.870 43.478 0.00 0.00 44.57 3.01
4686 5711 3.876914 TGTGACTGGTTTCAGACATGTTC 59.123 43.478 0.00 0.00 44.57 3.18
4687 5712 3.884895 TGTGACTGGTTTCAGACATGTT 58.115 40.909 0.00 0.00 44.57 2.71
4688 5713 3.558931 TGTGACTGGTTTCAGACATGT 57.441 42.857 0.00 0.00 44.57 3.21
4689 5714 4.414999 CATGTGACTGGTTTCAGACATG 57.585 45.455 11.23 11.23 44.57 3.21
4690 5715 4.090761 ACATGTGACTGGTTTCAGACAT 57.909 40.909 0.00 0.00 44.57 3.06
4691 5716 3.558931 ACATGTGACTGGTTTCAGACA 57.441 42.857 0.00 0.00 43.49 3.41
4692 5717 3.876914 TGAACATGTGACTGGTTTCAGAC 59.123 43.478 0.00 0.00 43.49 3.51
4693 5718 4.149511 TGAACATGTGACTGGTTTCAGA 57.850 40.909 0.00 0.00 43.49 3.27
4694 5719 4.898829 TTGAACATGTGACTGGTTTCAG 57.101 40.909 0.00 0.00 46.10 3.02
4695 5720 6.951062 TTATTGAACATGTGACTGGTTTCA 57.049 33.333 0.00 0.00 0.00 2.69
4696 5721 8.816640 AAATTATTGAACATGTGACTGGTTTC 57.183 30.769 0.00 0.00 0.00 2.78
4697 5722 9.260002 GAAAATTATTGAACATGTGACTGGTTT 57.740 29.630 0.00 0.00 0.00 3.27
4698 5723 8.641541 AGAAAATTATTGAACATGTGACTGGTT 58.358 29.630 0.00 0.00 0.00 3.67
4699 5724 8.181904 AGAAAATTATTGAACATGTGACTGGT 57.818 30.769 0.00 0.00 0.00 4.00
4735 5760 3.129813 ACAGCTTTGTACCGTCGATATCA 59.870 43.478 3.12 0.00 0.00 2.15
4742 5767 1.145803 GTCCACAGCTTTGTACCGTC 58.854 55.000 0.00 0.00 0.00 4.79
4757 5782 5.724370 TGTAAAGATCTGTAATCCTGGTCCA 59.276 40.000 0.00 0.00 0.00 4.02
4824 5849 9.797642 TGTAATGTAATGCTGGATCTATTTCAT 57.202 29.630 0.00 0.00 0.00 2.57
4861 5886 7.095229 CGATTTGATTTGTTCTTCAGTACCTCA 60.095 37.037 0.00 0.00 0.00 3.86
4945 5974 2.928116 ACGCCGAGCACTAGAATAAAAC 59.072 45.455 0.00 0.00 0.00 2.43
4968 5997 3.451141 TTGTGGGAGTTTGCATTTGTC 57.549 42.857 0.00 0.00 0.00 3.18
5000 6029 7.094508 TGCTGTTAAAATTGTTCTGTCTGAA 57.905 32.000 0.00 0.00 0.00 3.02
5003 6032 5.067674 TGCTGCTGTTAAAATTGTTCTGTCT 59.932 36.000 0.00 0.00 0.00 3.41
5032 6063 1.228429 GTGGTTTGGCCCTGCAGTA 60.228 57.895 13.81 0.00 36.04 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.