Multiple sequence alignment - TraesCS2D01G031900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G031900 | chr2D | 100.000 | 6706 | 0 | 0 | 1 | 6706 | 12690497 | 12697202 | 0.000000e+00 | 12384.0 |
1 | TraesCS2D01G031900 | chr2B | 93.017 | 2148 | 117 | 20 | 4564 | 6706 | 23122818 | 23124937 | 0.000000e+00 | 3105.0 |
2 | TraesCS2D01G031900 | chr2B | 94.082 | 1318 | 41 | 12 | 1859 | 3155 | 23119642 | 23120943 | 0.000000e+00 | 1967.0 |
3 | TraesCS2D01G031900 | chr2B | 88.493 | 1347 | 75 | 27 | 3260 | 4563 | 23121422 | 23122731 | 0.000000e+00 | 1555.0 |
4 | TraesCS2D01G031900 | chr2B | 93.556 | 450 | 21 | 3 | 1305 | 1746 | 23119192 | 23119641 | 0.000000e+00 | 664.0 |
5 | TraesCS2D01G031900 | chr2B | 85.569 | 589 | 53 | 18 | 161 | 729 | 23117978 | 23118554 | 7.490000e-164 | 588.0 |
6 | TraesCS2D01G031900 | chr2B | 87.613 | 444 | 34 | 8 | 793 | 1233 | 23118677 | 23119102 | 4.670000e-136 | 496.0 |
7 | TraesCS2D01G031900 | chr2B | 93.382 | 136 | 7 | 2 | 1738 | 1872 | 659534375 | 659534509 | 4.100000e-47 | 200.0 |
8 | TraesCS2D01G031900 | chr2B | 96.552 | 58 | 2 | 0 | 3206 | 3263 | 23121119 | 23121176 | 5.540000e-16 | 97.1 |
9 | TraesCS2D01G031900 | chr2A | 90.311 | 1992 | 119 | 21 | 4564 | 6547 | 14818041 | 14819966 | 0.000000e+00 | 2542.0 |
10 | TraesCS2D01G031900 | chr2A | 95.344 | 1396 | 29 | 14 | 3170 | 4563 | 14816564 | 14817925 | 0.000000e+00 | 2185.0 |
11 | TraesCS2D01G031900 | chr2A | 94.414 | 1289 | 47 | 8 | 1859 | 3133 | 14815050 | 14816327 | 0.000000e+00 | 1958.0 |
12 | TraesCS2D01G031900 | chr2A | 88.185 | 1278 | 75 | 31 | 1 | 1227 | 14813095 | 14814347 | 0.000000e+00 | 1454.0 |
13 | TraesCS2D01G031900 | chr2A | 97.500 | 120 | 3 | 0 | 1743 | 1862 | 78845690 | 78845571 | 8.820000e-49 | 206.0 |
14 | TraesCS2D01G031900 | chr2A | 93.548 | 62 | 3 | 1 | 6134 | 6194 | 14820189 | 14820250 | 2.580000e-14 | 91.6 |
15 | TraesCS2D01G031900 | chr5B | 90.000 | 310 | 12 | 4 | 906 | 1213 | 440779652 | 440779944 | 3.790000e-102 | 383.0 |
16 | TraesCS2D01G031900 | chr5B | 79.310 | 232 | 27 | 15 | 1238 | 1448 | 440780064 | 440780295 | 7.010000e-30 | 143.0 |
17 | TraesCS2D01G031900 | chr7B | 88.172 | 279 | 18 | 7 | 957 | 1232 | 612595535 | 612595801 | 1.090000e-82 | 318.0 |
18 | TraesCS2D01G031900 | chr7B | 96.721 | 122 | 4 | 0 | 1740 | 1861 | 81424985 | 81425106 | 3.170000e-48 | 204.0 |
19 | TraesCS2D01G031900 | chr7B | 95.918 | 98 | 4 | 0 | 1099 | 1196 | 629481551 | 629481454 | 6.960000e-35 | 159.0 |
20 | TraesCS2D01G031900 | chr1B | 96.748 | 123 | 4 | 0 | 1739 | 1861 | 8855862 | 8855984 | 8.820000e-49 | 206.0 |
21 | TraesCS2D01G031900 | chr1B | 92.701 | 137 | 8 | 2 | 1728 | 1863 | 334306811 | 334306676 | 5.310000e-46 | 196.0 |
22 | TraesCS2D01G031900 | chr3B | 95.968 | 124 | 5 | 0 | 1742 | 1865 | 829966123 | 829966246 | 1.140000e-47 | 202.0 |
23 | TraesCS2D01G031900 | chr3B | 95.968 | 124 | 5 | 0 | 1742 | 1865 | 830093610 | 830093733 | 1.140000e-47 | 202.0 |
24 | TraesCS2D01G031900 | chr3B | 95.968 | 124 | 5 | 0 | 1742 | 1865 | 830140895 | 830141018 | 1.140000e-47 | 202.0 |
25 | TraesCS2D01G031900 | chr6B | 93.939 | 132 | 6 | 2 | 1745 | 1875 | 187836886 | 187836756 | 1.480000e-46 | 198.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G031900 | chr2D | 12690497 | 12697202 | 6705 | False | 12384.00 | 12384 | 100.000000 | 1 | 6706 | 1 | chr2D.!!$F1 | 6705 |
1 | TraesCS2D01G031900 | chr2B | 23117978 | 23124937 | 6959 | False | 1210.30 | 3105 | 91.268857 | 161 | 6706 | 7 | chr2B.!!$F2 | 6545 |
2 | TraesCS2D01G031900 | chr2A | 14813095 | 14820250 | 7155 | False | 1646.12 | 2542 | 92.360400 | 1 | 6547 | 5 | chr2A.!!$F1 | 6546 |
3 | TraesCS2D01G031900 | chr5B | 440779652 | 440780295 | 643 | False | 263.00 | 383 | 84.655000 | 906 | 1448 | 2 | chr5B.!!$F1 | 542 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
338 | 350 | 0.312416 | CGCCGCTTGCTATAGACTCT | 59.688 | 55.000 | 3.21 | 0.00 | 38.05 | 3.24 | F |
1759 | 2142 | 0.033796 | ATGTACTCCCTCCGTCCGAA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 | F |
1849 | 2232 | 0.036306 | GAGGGACAAGCTTTTCCGGA | 59.964 | 55.000 | 22.30 | 0.00 | 32.00 | 5.14 | F |
1850 | 2233 | 0.250770 | AGGGACAAGCTTTTCCGGAC | 60.251 | 55.000 | 22.30 | 11.02 | 32.00 | 4.79 | F |
1853 | 2236 | 0.601841 | GACAAGCTTTTCCGGACGGA | 60.602 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 | F |
1854 | 2237 | 0.602905 | ACAAGCTTTTCCGGACGGAG | 60.603 | 55.000 | 13.64 | 3.27 | 46.06 | 4.63 | F |
2729 | 3126 | 0.958822 | CTTTCCTCCCCCGTTGTTTG | 59.041 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 | F |
2733 | 3130 | 1.362355 | CTCCCCCGTTGTTTGTTGC | 59.638 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 | F |
2855 | 3258 | 1.873591 | CGTGGCTAGTTTTTCTGCAGT | 59.126 | 47.619 | 14.67 | 0.00 | 0.00 | 4.40 | F |
2856 | 3259 | 3.064207 | CGTGGCTAGTTTTTCTGCAGTA | 58.936 | 45.455 | 14.67 | 0.00 | 0.00 | 2.74 | F |
2857 | 3260 | 3.123621 | CGTGGCTAGTTTTTCTGCAGTAG | 59.876 | 47.826 | 14.67 | 7.97 | 0.00 | 2.57 | F |
3913 | 4799 | 3.244044 | TGGGCCTTTTTACTTGTCATTGC | 60.244 | 43.478 | 4.53 | 0.00 | 0.00 | 3.56 | F |
4822 | 5831 | 3.504863 | CACCAACTGCAGCAATCATAAC | 58.495 | 45.455 | 15.27 | 0.00 | 0.00 | 1.89 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1842 | 2225 | 0.032813 | ATACTCCCTCCGTCCGGAAA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 3.13 | R |
2717 | 3114 | 0.824182 | TAGGCAACAAACAACGGGGG | 60.824 | 55.000 | 0.00 | 0.00 | 41.41 | 5.40 | R |
2733 | 3130 | 2.354821 | GTGCCAAACGAGCCTAAATAGG | 59.645 | 50.000 | 1.92 | 1.92 | 46.42 | 2.57 | R |
3162 | 3565 | 2.834638 | AATCACTGGAATTCAGGGGG | 57.165 | 50.000 | 7.93 | 0.00 | 46.67 | 5.40 | R |
3163 | 3566 | 3.435601 | CCCTAATCACTGGAATTCAGGGG | 60.436 | 52.174 | 13.15 | 4.52 | 46.67 | 4.79 | R |
3532 | 4396 | 5.188948 | ACAAGGCCACTGTAATACTACATGA | 59.811 | 40.000 | 5.01 | 0.00 | 37.41 | 3.07 | R |
4420 | 5314 | 2.169832 | AACACCCACTCATTCTCACG | 57.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 | R |
4421 | 5315 | 7.103641 | TCTATTTAACACCCACTCATTCTCAC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 | R |
4901 | 5910 | 5.559427 | AAGGGCAATTTCACAAAAACAAC | 57.441 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 | R |
4973 | 5982 | 5.878406 | ACAGATCCTAAACAGTCCCTATG | 57.122 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 | R |
5010 | 6019 | 1.352352 | CACCACCCTCCATCTTGAGTT | 59.648 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 | R |
5295 | 6304 | 0.463295 | CTCATGCGGCCAAGTGATCT | 60.463 | 55.000 | 2.24 | 0.00 | 0.00 | 2.75 | R |
6107 | 7123 | 0.319211 | TCGACGGTACAAAGCTGTGG | 60.319 | 55.000 | 9.18 | 0.00 | 36.96 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
65 | 66 | 6.950842 | AGATGATGACAGTCCAACTTATCAA | 58.049 | 36.000 | 0.00 | 0.00 | 29.90 | 2.57 |
98 | 99 | 5.839621 | TGTACTATATTCGACAAAGCCTCC | 58.160 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
233 | 242 | 2.234414 | GACATGTTTGGTTGGCATCCAT | 59.766 | 45.455 | 17.58 | 2.07 | 34.75 | 3.41 |
286 | 297 | 5.163499 | GGAAAAGTGTTTGGTTGTATCCACA | 60.163 | 40.000 | 0.00 | 0.00 | 37.20 | 4.17 |
328 | 340 | 0.804544 | TAGTCACATACGCCGCTTGC | 60.805 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
338 | 350 | 0.312416 | CGCCGCTTGCTATAGACTCT | 59.688 | 55.000 | 3.21 | 0.00 | 38.05 | 3.24 |
370 | 382 | 3.535280 | ACTTTTGCCACGACCAATTTT | 57.465 | 38.095 | 0.00 | 0.00 | 0.00 | 1.82 |
434 | 447 | 1.288752 | GGCAACCAAACATGTCCGG | 59.711 | 57.895 | 11.09 | 11.09 | 0.00 | 5.14 |
438 | 451 | 1.460273 | AACCAAACATGTCCGGCACC | 61.460 | 55.000 | 12.31 | 0.00 | 0.00 | 5.01 |
453 | 466 | 1.154225 | CACCGGCGCTTGTTCAATC | 60.154 | 57.895 | 7.64 | 0.00 | 0.00 | 2.67 |
483 | 496 | 2.028925 | GGGTTGTGCCGGCAAAAG | 59.971 | 61.111 | 32.40 | 0.00 | 38.44 | 2.27 |
522 | 538 | 5.871396 | TTATCTTGCGATTTACTCCCTCT | 57.129 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
552 | 579 | 5.679734 | AATATTATCTTGGAAGTGCGCAG | 57.320 | 39.130 | 12.22 | 0.00 | 0.00 | 5.18 |
597 | 624 | 9.284968 | CTCTACACAAGAAAAAGGGAGAAAATA | 57.715 | 33.333 | 0.00 | 0.00 | 32.46 | 1.40 |
642 | 669 | 7.573968 | GTCCCAGAGACAAAATAATGCTAAT | 57.426 | 36.000 | 0.00 | 0.00 | 45.55 | 1.73 |
924 | 1035 | 0.535102 | CTCCCGAATCAAATCCCCCG | 60.535 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
932 | 1049 | 1.077716 | CAAATCCCCCGTCACCTCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
933 | 1050 | 2.666098 | AAATCCCCCGTCACCTCCG | 61.666 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
941 | 1058 | 4.699522 | GTCACCTCCGCCACCACC | 62.700 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
954 | 1071 | 2.286885 | CCACCCCACCCCACCTAT | 60.287 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1227 | 1367 | 2.115266 | CCCAACACCCCACACCTC | 59.885 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1228 | 1368 | 2.281484 | CCAACACCCCACACCTCG | 60.281 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1239 | 1510 | 1.404315 | CCACACCTCGCCTCTAGTTTC | 60.404 | 57.143 | 0.00 | 0.00 | 0.00 | 2.78 |
1244 | 1515 | 1.470632 | CCTCGCCTCTAGTTTCTGCTG | 60.471 | 57.143 | 0.00 | 0.00 | 0.00 | 4.41 |
1367 | 1642 | 2.047061 | TCATGGGCTAGGGTGTGATAC | 58.953 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
1377 | 1669 | 0.464036 | GGTGTGATACGAGATGGGCA | 59.536 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1588 | 1946 | 0.919710 | GGTCTGGAGGCTTGGGTAAT | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1662 | 2023 | 4.746729 | CCAAATAACATGTGTGGGATGTG | 58.253 | 43.478 | 0.00 | 0.00 | 34.22 | 3.21 |
1704 | 2087 | 9.764363 | ATTTCTTACCTTTTGTTCTGGAAAATC | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
1752 | 2135 | 6.919775 | ACTCATTGTATATGTACTCCCTCC | 57.080 | 41.667 | 1.08 | 0.00 | 0.00 | 4.30 |
1753 | 2136 | 5.477291 | ACTCATTGTATATGTACTCCCTCCG | 59.523 | 44.000 | 1.08 | 0.00 | 0.00 | 4.63 |
1754 | 2137 | 5.391256 | TCATTGTATATGTACTCCCTCCGT | 58.609 | 41.667 | 1.08 | 0.00 | 0.00 | 4.69 |
1755 | 2138 | 5.475909 | TCATTGTATATGTACTCCCTCCGTC | 59.524 | 44.000 | 1.08 | 0.00 | 0.00 | 4.79 |
1756 | 2139 | 3.759581 | TGTATATGTACTCCCTCCGTCC | 58.240 | 50.000 | 1.08 | 0.00 | 0.00 | 4.79 |
1757 | 2140 | 1.906990 | ATATGTACTCCCTCCGTCCG | 58.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1758 | 2141 | 0.839277 | TATGTACTCCCTCCGTCCGA | 59.161 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1759 | 2142 | 0.033796 | ATGTACTCCCTCCGTCCGAA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1760 | 2143 | 0.251297 | TGTACTCCCTCCGTCCGAAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1761 | 2144 | 0.890683 | GTACTCCCTCCGTCCGAAAA | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1762 | 2145 | 1.273327 | GTACTCCCTCCGTCCGAAAAA | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 1.94 |
1780 | 2163 | 3.801114 | AAAACTTGTCCCAAGCTTGTC | 57.199 | 42.857 | 24.35 | 14.49 | 0.00 | 3.18 |
1781 | 2164 | 1.692411 | AACTTGTCCCAAGCTTGTCC | 58.308 | 50.000 | 24.35 | 12.15 | 0.00 | 4.02 |
1782 | 2165 | 0.178990 | ACTTGTCCCAAGCTTGTCCC | 60.179 | 55.000 | 24.35 | 11.81 | 0.00 | 4.46 |
1783 | 2166 | 0.111253 | CTTGTCCCAAGCTTGTCCCT | 59.889 | 55.000 | 24.35 | 0.00 | 0.00 | 4.20 |
1784 | 2167 | 0.110486 | TTGTCCCAAGCTTGTCCCTC | 59.890 | 55.000 | 24.35 | 10.65 | 0.00 | 4.30 |
1785 | 2168 | 1.059584 | TGTCCCAAGCTTGTCCCTCA | 61.060 | 55.000 | 24.35 | 12.85 | 0.00 | 3.86 |
1786 | 2169 | 0.110486 | GTCCCAAGCTTGTCCCTCAA | 59.890 | 55.000 | 24.35 | 0.00 | 34.61 | 3.02 |
1787 | 2170 | 0.850100 | TCCCAAGCTTGTCCCTCAAA | 59.150 | 50.000 | 24.35 | 0.00 | 35.48 | 2.69 |
1788 | 2171 | 1.428912 | TCCCAAGCTTGTCCCTCAAAT | 59.571 | 47.619 | 24.35 | 0.00 | 35.48 | 2.32 |
1789 | 2172 | 1.547372 | CCCAAGCTTGTCCCTCAAATG | 59.453 | 52.381 | 24.35 | 5.47 | 35.48 | 2.32 |
1790 | 2173 | 1.547372 | CCAAGCTTGTCCCTCAAATGG | 59.453 | 52.381 | 24.35 | 1.81 | 35.48 | 3.16 |
1791 | 2174 | 2.517959 | CAAGCTTGTCCCTCAAATGGA | 58.482 | 47.619 | 18.65 | 0.00 | 35.48 | 3.41 |
1792 | 2175 | 3.094572 | CAAGCTTGTCCCTCAAATGGAT | 58.905 | 45.455 | 18.65 | 0.00 | 35.48 | 3.41 |
1793 | 2176 | 2.731572 | AGCTTGTCCCTCAAATGGATG | 58.268 | 47.619 | 0.00 | 0.00 | 35.48 | 3.51 |
1794 | 2177 | 2.042162 | AGCTTGTCCCTCAAATGGATGT | 59.958 | 45.455 | 0.00 | 0.00 | 35.48 | 3.06 |
1795 | 2178 | 3.266772 | AGCTTGTCCCTCAAATGGATGTA | 59.733 | 43.478 | 0.00 | 0.00 | 35.48 | 2.29 |
1796 | 2179 | 4.079558 | AGCTTGTCCCTCAAATGGATGTAT | 60.080 | 41.667 | 0.00 | 0.00 | 35.48 | 2.29 |
1797 | 2180 | 4.276926 | GCTTGTCCCTCAAATGGATGTATC | 59.723 | 45.833 | 0.00 | 0.00 | 35.48 | 2.24 |
1798 | 2181 | 5.688807 | CTTGTCCCTCAAATGGATGTATCT | 58.311 | 41.667 | 0.00 | 0.00 | 35.48 | 1.98 |
1799 | 2182 | 6.688922 | GCTTGTCCCTCAAATGGATGTATCTA | 60.689 | 42.308 | 0.00 | 0.00 | 35.48 | 1.98 |
1800 | 2183 | 6.425210 | TGTCCCTCAAATGGATGTATCTAG | 57.575 | 41.667 | 0.00 | 0.00 | 33.65 | 2.43 |
1801 | 2184 | 5.221722 | TGTCCCTCAAATGGATGTATCTAGC | 60.222 | 44.000 | 0.00 | 0.00 | 33.65 | 3.42 |
1802 | 2185 | 4.907269 | TCCCTCAAATGGATGTATCTAGCA | 59.093 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
1803 | 2186 | 4.999950 | CCCTCAAATGGATGTATCTAGCAC | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
1804 | 2187 | 5.221803 | CCCTCAAATGGATGTATCTAGCACT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1805 | 2188 | 6.014242 | CCCTCAAATGGATGTATCTAGCACTA | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
1806 | 2189 | 7.445121 | CCTCAAATGGATGTATCTAGCACTAA | 58.555 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
1807 | 2190 | 7.386299 | CCTCAAATGGATGTATCTAGCACTAAC | 59.614 | 40.741 | 0.00 | 0.00 | 0.00 | 2.34 |
1808 | 2191 | 8.023021 | TCAAATGGATGTATCTAGCACTAACT | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1809 | 2192 | 8.486210 | TCAAATGGATGTATCTAGCACTAACTT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1810 | 2193 | 8.554528 | CAAATGGATGTATCTAGCACTAACTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1811 | 2194 | 6.161855 | TGGATGTATCTAGCACTAACTTGG | 57.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
1812 | 2195 | 5.661312 | TGGATGTATCTAGCACTAACTTGGT | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1813 | 2196 | 5.986135 | GGATGTATCTAGCACTAACTTGGTG | 59.014 | 44.000 | 0.97 | 0.97 | 37.70 | 4.17 |
1814 | 2197 | 5.339008 | TGTATCTAGCACTAACTTGGTGG | 57.661 | 43.478 | 7.33 | 0.00 | 35.47 | 4.61 |
1815 | 2198 | 4.775780 | TGTATCTAGCACTAACTTGGTGGT | 59.224 | 41.667 | 13.64 | 13.64 | 45.46 | 4.16 |
1816 | 2199 | 5.953548 | TGTATCTAGCACTAACTTGGTGGTA | 59.046 | 40.000 | 14.32 | 14.32 | 43.66 | 3.25 |
1821 | 2204 | 5.340439 | AGCACTAACTTGGTGGTAGATAC | 57.660 | 43.478 | 8.10 | 0.00 | 42.47 | 2.24 |
1822 | 2205 | 4.775780 | AGCACTAACTTGGTGGTAGATACA | 59.224 | 41.667 | 8.10 | 0.00 | 42.47 | 2.29 |
1823 | 2206 | 5.425539 | AGCACTAACTTGGTGGTAGATACAT | 59.574 | 40.000 | 8.10 | 0.00 | 42.47 | 2.29 |
1824 | 2207 | 5.753921 | GCACTAACTTGGTGGTAGATACATC | 59.246 | 44.000 | 7.33 | 0.00 | 38.19 | 3.06 |
1825 | 2208 | 6.281405 | CACTAACTTGGTGGTAGATACATCC | 58.719 | 44.000 | 0.00 | 0.00 | 38.19 | 3.51 |
1826 | 2209 | 5.962031 | ACTAACTTGGTGGTAGATACATCCA | 59.038 | 40.000 | 0.00 | 2.64 | 38.19 | 3.41 |
1827 | 2210 | 5.975988 | AACTTGGTGGTAGATACATCCAT | 57.024 | 39.130 | 6.33 | 0.00 | 33.19 | 3.41 |
1828 | 2211 | 5.975988 | ACTTGGTGGTAGATACATCCATT | 57.024 | 39.130 | 6.33 | 0.00 | 33.19 | 3.16 |
1829 | 2212 | 6.327386 | ACTTGGTGGTAGATACATCCATTT | 57.673 | 37.500 | 6.33 | 0.00 | 33.19 | 2.32 |
1830 | 2213 | 6.122277 | ACTTGGTGGTAGATACATCCATTTG | 58.878 | 40.000 | 6.33 | 4.25 | 33.19 | 2.32 |
1831 | 2214 | 5.966853 | TGGTGGTAGATACATCCATTTGA | 57.033 | 39.130 | 0.00 | 0.00 | 33.68 | 2.69 |
1832 | 2215 | 5.928976 | TGGTGGTAGATACATCCATTTGAG | 58.071 | 41.667 | 0.00 | 0.00 | 33.68 | 3.02 |
1833 | 2216 | 5.163205 | TGGTGGTAGATACATCCATTTGAGG | 60.163 | 44.000 | 0.00 | 0.00 | 33.68 | 3.86 |
1834 | 2217 | 5.308825 | GTGGTAGATACATCCATTTGAGGG | 58.691 | 45.833 | 0.00 | 0.00 | 33.68 | 4.30 |
1835 | 2218 | 5.071788 | GTGGTAGATACATCCATTTGAGGGA | 59.928 | 44.000 | 0.00 | 0.00 | 39.14 | 4.20 |
1836 | 2219 | 5.071788 | TGGTAGATACATCCATTTGAGGGAC | 59.928 | 44.000 | 0.00 | 0.00 | 37.23 | 4.46 |
1837 | 2220 | 5.071788 | GGTAGATACATCCATTTGAGGGACA | 59.928 | 44.000 | 0.00 | 0.00 | 37.23 | 4.02 |
1838 | 2221 | 5.715439 | AGATACATCCATTTGAGGGACAA | 57.285 | 39.130 | 0.00 | 0.00 | 37.23 | 3.18 |
1839 | 2222 | 5.688807 | AGATACATCCATTTGAGGGACAAG | 58.311 | 41.667 | 0.00 | 0.00 | 39.77 | 3.16 |
1840 | 2223 | 2.450476 | ACATCCATTTGAGGGACAAGC | 58.550 | 47.619 | 0.00 | 0.00 | 39.77 | 4.01 |
1841 | 2224 | 2.042162 | ACATCCATTTGAGGGACAAGCT | 59.958 | 45.455 | 0.00 | 0.00 | 39.77 | 3.74 |
1842 | 2225 | 2.978156 | TCCATTTGAGGGACAAGCTT | 57.022 | 45.000 | 0.00 | 0.00 | 39.77 | 3.74 |
1843 | 2226 | 3.243359 | TCCATTTGAGGGACAAGCTTT | 57.757 | 42.857 | 0.00 | 0.00 | 39.77 | 3.51 |
1844 | 2227 | 3.575805 | TCCATTTGAGGGACAAGCTTTT | 58.424 | 40.909 | 0.00 | 0.00 | 39.77 | 2.27 |
1845 | 2228 | 3.573967 | TCCATTTGAGGGACAAGCTTTTC | 59.426 | 43.478 | 3.91 | 3.91 | 39.77 | 2.29 |
1846 | 2229 | 3.306294 | CCATTTGAGGGACAAGCTTTTCC | 60.306 | 47.826 | 21.34 | 21.34 | 39.77 | 3.13 |
1847 | 2230 | 1.604604 | TTGAGGGACAAGCTTTTCCG | 58.395 | 50.000 | 22.30 | 2.85 | 34.20 | 4.30 |
1848 | 2231 | 0.250727 | TGAGGGACAAGCTTTTCCGG | 60.251 | 55.000 | 22.30 | 0.00 | 32.00 | 5.14 |
1849 | 2232 | 0.036306 | GAGGGACAAGCTTTTCCGGA | 59.964 | 55.000 | 22.30 | 0.00 | 32.00 | 5.14 |
1850 | 2233 | 0.250770 | AGGGACAAGCTTTTCCGGAC | 60.251 | 55.000 | 22.30 | 11.02 | 32.00 | 4.79 |
1851 | 2234 | 1.574702 | GGGACAAGCTTTTCCGGACG | 61.575 | 60.000 | 22.30 | 0.00 | 32.00 | 4.79 |
1852 | 2235 | 1.574702 | GGACAAGCTTTTCCGGACGG | 61.575 | 60.000 | 15.65 | 3.96 | 0.00 | 4.79 |
1853 | 2236 | 0.601841 | GACAAGCTTTTCCGGACGGA | 60.602 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 |
1854 | 2237 | 0.602905 | ACAAGCTTTTCCGGACGGAG | 60.603 | 55.000 | 13.64 | 3.27 | 46.06 | 4.63 |
1855 | 2238 | 1.003718 | AAGCTTTTCCGGACGGAGG | 60.004 | 57.895 | 13.64 | 9.30 | 46.06 | 4.30 |
1856 | 2239 | 2.436115 | GCTTTTCCGGACGGAGGG | 60.436 | 66.667 | 13.64 | 8.97 | 46.06 | 4.30 |
1857 | 2240 | 2.951101 | GCTTTTCCGGACGGAGGGA | 61.951 | 63.158 | 13.64 | 1.83 | 46.06 | 4.20 |
1893 | 2276 | 8.121305 | AGATGATATTAGAGAAGTACCAGCAG | 57.879 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
1898 | 2281 | 5.995565 | TTAGAGAAGTACCAGCAGCTTTA | 57.004 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
1900 | 2283 | 3.835395 | AGAGAAGTACCAGCAGCTTTACT | 59.165 | 43.478 | 7.44 | 7.44 | 0.00 | 2.24 |
2324 | 2713 | 2.787249 | CAATCGTCTGCTTGGCCG | 59.213 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
2414 | 2803 | 4.141413 | TGCAGCTGTGGATTCCATAACTAT | 60.141 | 41.667 | 16.64 | 0.00 | 35.28 | 2.12 |
2528 | 2925 | 9.736023 | CTGAATTGTAATAAGAATGGGCTTTAC | 57.264 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2576 | 2973 | 4.286707 | TCTAGTTTAGCCCTGATACTGCA | 58.713 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
2577 | 2974 | 3.268023 | AGTTTAGCCCTGATACTGCAC | 57.732 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2578 | 2975 | 2.840651 | AGTTTAGCCCTGATACTGCACT | 59.159 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2580 | 2977 | 4.469945 | AGTTTAGCCCTGATACTGCACTTA | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2581 | 2978 | 5.131142 | AGTTTAGCCCTGATACTGCACTTAT | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2582 | 2979 | 3.760580 | AGCCCTGATACTGCACTTATC | 57.239 | 47.619 | 4.28 | 4.28 | 0.00 | 1.75 |
2583 | 2980 | 3.041211 | AGCCCTGATACTGCACTTATCA | 58.959 | 45.455 | 11.22 | 11.22 | 35.21 | 2.15 |
2584 | 2981 | 3.070734 | AGCCCTGATACTGCACTTATCAG | 59.929 | 47.826 | 22.99 | 22.99 | 46.90 | 2.90 |
2630 | 3027 | 4.853924 | ATGTCCGATCTTGTTGCTTTTT | 57.146 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
2655 | 3052 | 8.560355 | TTTGTCATCTAATTTCCTTCATCGAA | 57.440 | 30.769 | 0.00 | 0.00 | 0.00 | 3.71 |
2717 | 3114 | 8.662781 | TGCATATTACACAGATAACTTTCCTC | 57.337 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
2729 | 3126 | 0.958822 | CTTTCCTCCCCCGTTGTTTG | 59.041 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2733 | 3130 | 1.362355 | CTCCCCCGTTGTTTGTTGC | 59.638 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
2754 | 3151 | 2.354821 | CCTATTTAGGCTCGTTTGGCAC | 59.645 | 50.000 | 0.00 | 0.00 | 36.53 | 5.01 |
2759 | 3156 | 2.253452 | GCTCGTTTGGCACTGCAG | 59.747 | 61.111 | 13.48 | 13.48 | 0.00 | 4.41 |
2855 | 3258 | 1.873591 | CGTGGCTAGTTTTTCTGCAGT | 59.126 | 47.619 | 14.67 | 0.00 | 0.00 | 4.40 |
2856 | 3259 | 3.064207 | CGTGGCTAGTTTTTCTGCAGTA | 58.936 | 45.455 | 14.67 | 0.00 | 0.00 | 2.74 |
2857 | 3260 | 3.123621 | CGTGGCTAGTTTTTCTGCAGTAG | 59.876 | 47.826 | 14.67 | 7.97 | 0.00 | 2.57 |
2858 | 3261 | 4.315803 | GTGGCTAGTTTTTCTGCAGTAGA | 58.684 | 43.478 | 14.67 | 0.00 | 0.00 | 2.59 |
2859 | 3262 | 4.938226 | GTGGCTAGTTTTTCTGCAGTAGAT | 59.062 | 41.667 | 14.67 | 0.00 | 34.80 | 1.98 |
2860 | 3263 | 6.106673 | GTGGCTAGTTTTTCTGCAGTAGATA | 58.893 | 40.000 | 14.67 | 0.28 | 34.80 | 1.98 |
3192 | 3795 | 8.561536 | TGAATTCCAGTGATTAGGGAACTATA | 57.438 | 34.615 | 2.27 | 0.00 | 43.94 | 1.31 |
3193 | 3796 | 9.170890 | TGAATTCCAGTGATTAGGGAACTATAT | 57.829 | 33.333 | 2.27 | 0.00 | 43.94 | 0.86 |
3502 | 4366 | 9.969001 | AACCTAGTTCCATAGTTTATTTGCTTA | 57.031 | 29.630 | 0.00 | 0.00 | 0.00 | 3.09 |
3532 | 4396 | 9.328845 | ACATTATGCATTCTTTCTTGTGTTTTT | 57.671 | 25.926 | 3.54 | 0.00 | 0.00 | 1.94 |
3533 | 4397 | 9.801714 | CATTATGCATTCTTTCTTGTGTTTTTC | 57.198 | 29.630 | 3.54 | 0.00 | 0.00 | 2.29 |
3855 | 4741 | 7.591821 | ACTGGGATAATAAAAGGCTAAATCCA | 58.408 | 34.615 | 0.00 | 0.00 | 34.39 | 3.41 |
3913 | 4799 | 3.244044 | TGGGCCTTTTTACTTGTCATTGC | 60.244 | 43.478 | 4.53 | 0.00 | 0.00 | 3.56 |
3924 | 4810 | 8.453238 | TTTACTTGTCATTGCTTGTTTACCTA | 57.547 | 30.769 | 0.00 | 0.00 | 0.00 | 3.08 |
3936 | 4822 | 8.800370 | TGCTTGTTTACCTAATTATCACATGA | 57.200 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
4420 | 5314 | 7.396540 | ACATGAATAGACCTGGTCAAATTTC | 57.603 | 36.000 | 27.48 | 21.23 | 34.60 | 2.17 |
4421 | 5315 | 6.094048 | ACATGAATAGACCTGGTCAAATTTCG | 59.906 | 38.462 | 27.48 | 17.96 | 34.60 | 3.46 |
4452 | 5346 | 5.427157 | TGAGTGGGTGTTAAATAGATAGCCA | 59.573 | 40.000 | 0.00 | 0.00 | 36.65 | 4.75 |
4679 | 5688 | 6.096705 | TGACCATTGACAAATGAATGTATCCC | 59.903 | 38.462 | 0.00 | 0.00 | 45.17 | 3.85 |
4822 | 5831 | 3.504863 | CACCAACTGCAGCAATCATAAC | 58.495 | 45.455 | 15.27 | 0.00 | 0.00 | 1.89 |
5010 | 6019 | 6.627087 | AGGATCTGTTTGAGTTTATCCTGA | 57.373 | 37.500 | 0.00 | 0.00 | 41.24 | 3.86 |
5190 | 6199 | 8.730680 | TCCTTGAAGTAGAGCAAAATTTATGAC | 58.269 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
5221 | 6230 | 9.499479 | ACATAATGGCAAAAATATCACAAAACA | 57.501 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
5238 | 6247 | 5.761234 | ACAAAACAATGCATTGAGCTTCATT | 59.239 | 32.000 | 38.99 | 21.45 | 45.94 | 2.57 |
5254 | 6263 | 7.815549 | TGAGCTTCATTTCACATAACTACGTAA | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
5360 | 6369 | 4.219725 | TGTCTATCTTGGTGTGATCGTTGA | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
5418 | 6428 | 3.724478 | AGGTGTCATCTATGGGTCAAGA | 58.276 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
5443 | 6453 | 9.301897 | GATAGATCCAAAAACCTTAGCCATATT | 57.698 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5733 | 6743 | 2.766970 | TTGCTTGTACTTTTGCGACC | 57.233 | 45.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5736 | 6746 | 2.032799 | TGCTTGTACTTTTGCGACCAAG | 59.967 | 45.455 | 0.00 | 0.00 | 34.03 | 3.61 |
5750 | 6760 | 2.433436 | GACCAAGTTATTGAAGCGGGT | 58.567 | 47.619 | 0.00 | 0.00 | 38.83 | 5.28 |
5771 | 6781 | 1.194781 | TGGAGTCTCCTGGTTCTGCC | 61.195 | 60.000 | 19.82 | 0.00 | 37.46 | 4.85 |
5772 | 6782 | 1.194781 | GGAGTCTCCTGGTTCTGCCA | 61.195 | 60.000 | 12.02 | 0.00 | 46.95 | 4.92 |
5834 | 6844 | 1.228429 | GTGGTTTGGCCCTGCAGTA | 60.228 | 57.895 | 13.81 | 0.00 | 36.04 | 2.74 |
5862 | 6872 | 5.280945 | TGCTGCTGTTAAAATTGTTCTGTC | 58.719 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
5864 | 6874 | 5.400485 | GCTGCTGTTAAAATTGTTCTGTCTG | 59.600 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5866 | 6876 | 7.094508 | TGCTGTTAAAATTGTTCTGTCTGAA | 57.905 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5898 | 6910 | 3.451141 | TTGTGGGAGTTTGCATTTGTC | 57.549 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
5921 | 6933 | 2.928116 | ACGCCGAGCACTAGAATAAAAC | 59.072 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
6005 | 7021 | 7.095229 | CGATTTGATTTGTTCTTCAGTACCTCA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
6042 | 7058 | 9.797642 | TGTAATGTAATGCTGGATCTATTTCAT | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
6109 | 7125 | 5.724370 | TGTAAAGATCTGTAATCCTGGTCCA | 59.276 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6124 | 7140 | 1.145803 | GTCCACAGCTTTGTACCGTC | 58.854 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6131 | 7147 | 3.129813 | ACAGCTTTGTACCGTCGATATCA | 59.870 | 43.478 | 3.12 | 0.00 | 0.00 | 2.15 |
6167 | 7183 | 8.181904 | AGAAAATTATTGAACATGTGACTGGT | 57.818 | 30.769 | 0.00 | 0.00 | 0.00 | 4.00 |
6168 | 7184 | 8.641541 | AGAAAATTATTGAACATGTGACTGGTT | 58.358 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
6169 | 7185 | 9.260002 | GAAAATTATTGAACATGTGACTGGTTT | 57.740 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
6170 | 7186 | 8.816640 | AAATTATTGAACATGTGACTGGTTTC | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 2.78 |
6171 | 7187 | 6.951062 | TTATTGAACATGTGACTGGTTTCA | 57.049 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
6172 | 7188 | 4.898829 | TTGAACATGTGACTGGTTTCAG | 57.101 | 40.909 | 0.00 | 0.00 | 46.10 | 3.02 |
6173 | 7189 | 4.149511 | TGAACATGTGACTGGTTTCAGA | 57.850 | 40.909 | 0.00 | 0.00 | 43.49 | 3.27 |
6174 | 7190 | 3.876914 | TGAACATGTGACTGGTTTCAGAC | 59.123 | 43.478 | 0.00 | 0.00 | 43.49 | 3.51 |
6175 | 7191 | 3.558931 | ACATGTGACTGGTTTCAGACA | 57.441 | 42.857 | 0.00 | 0.00 | 43.49 | 3.41 |
6176 | 7192 | 4.090761 | ACATGTGACTGGTTTCAGACAT | 57.909 | 40.909 | 0.00 | 0.00 | 44.57 | 3.06 |
6177 | 7193 | 4.414999 | CATGTGACTGGTTTCAGACATG | 57.585 | 45.455 | 11.23 | 11.23 | 44.57 | 3.21 |
6178 | 7194 | 3.558931 | TGTGACTGGTTTCAGACATGT | 57.441 | 42.857 | 0.00 | 0.00 | 44.57 | 3.21 |
6179 | 7195 | 3.884895 | TGTGACTGGTTTCAGACATGTT | 58.115 | 40.909 | 0.00 | 0.00 | 44.57 | 2.71 |
6180 | 7196 | 3.876914 | TGTGACTGGTTTCAGACATGTTC | 59.123 | 43.478 | 0.00 | 0.00 | 44.57 | 3.18 |
6181 | 7197 | 4.130118 | GTGACTGGTTTCAGACATGTTCT | 58.870 | 43.478 | 0.00 | 0.00 | 44.57 | 3.01 |
6182 | 7198 | 5.163353 | TGTGACTGGTTTCAGACATGTTCTA | 60.163 | 40.000 | 0.00 | 0.00 | 44.57 | 2.10 |
6183 | 7199 | 5.758296 | GTGACTGGTTTCAGACATGTTCTAA | 59.242 | 40.000 | 0.00 | 0.00 | 44.57 | 2.10 |
6184 | 7200 | 6.260050 | GTGACTGGTTTCAGACATGTTCTAAA | 59.740 | 38.462 | 0.00 | 0.00 | 44.57 | 1.85 |
6185 | 7201 | 6.826231 | TGACTGGTTTCAGACATGTTCTAAAA | 59.174 | 34.615 | 0.00 | 0.00 | 43.49 | 1.52 |
6186 | 7202 | 7.027778 | ACTGGTTTCAGACATGTTCTAAAAC | 57.972 | 36.000 | 0.00 | 7.53 | 40.59 | 2.43 |
6187 | 7203 | 6.601613 | ACTGGTTTCAGACATGTTCTAAAACA | 59.398 | 34.615 | 18.06 | 16.19 | 42.44 | 2.83 |
6189 | 7205 | 8.783093 | CTGGTTTCAGACATGTTCTAAAACATA | 58.217 | 33.333 | 18.06 | 10.35 | 46.45 | 2.29 |
6252 | 7296 | 7.605449 | TCAAATCATCACAAGGGAATCTTTTC | 58.395 | 34.615 | 0.00 | 0.00 | 32.41 | 2.29 |
6315 | 7359 | 8.389779 | TCACAAGCAGTCTTATATCACAAAAA | 57.610 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
6372 | 7418 | 7.401955 | TGAAAGGAAATTGCAATTTGGTTTT | 57.598 | 28.000 | 35.57 | 28.55 | 38.64 | 2.43 |
6387 | 7433 | 9.369904 | CAATTTGGTTTTAGAAAGTATGGATGG | 57.630 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
6408 | 7454 | 8.255905 | GGATGGAATTTCTGAACTGAATTTGAT | 58.744 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
6463 | 7509 | 7.611855 | CCACACTTTCAGGAAGGAAGTTTATAT | 59.388 | 37.037 | 0.00 | 0.00 | 39.79 | 0.86 |
6492 | 7538 | 7.068103 | TGCTTTGGAACTACTGAATGAGAAAAA | 59.932 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
6493 | 7539 | 7.592903 | GCTTTGGAACTACTGAATGAGAAAAAG | 59.407 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
6494 | 7540 | 8.519799 | TTTGGAACTACTGAATGAGAAAAAGT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
6579 | 7626 | 6.097554 | TCAGCTTTATTCCAAGTTTCCAACAA | 59.902 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
6583 | 7630 | 7.254421 | GCTTTATTCCAAGTTTCCAACAAACAG | 60.254 | 37.037 | 0.40 | 0.00 | 32.81 | 3.16 |
6637 | 7685 | 4.027572 | TGCACAACAGTTTGAGCTAAAC | 57.972 | 40.909 | 8.02 | 9.46 | 46.25 | 2.01 |
6649 | 7697 | 4.546829 | TGAGCTAAACTTGTACCGGAAT | 57.453 | 40.909 | 9.46 | 0.00 | 0.00 | 3.01 |
6650 | 7698 | 4.501071 | TGAGCTAAACTTGTACCGGAATC | 58.499 | 43.478 | 9.46 | 0.00 | 0.00 | 2.52 |
6655 | 7703 | 2.845363 | ACTTGTACCGGAATCCGTTT | 57.155 | 45.000 | 21.12 | 9.54 | 46.80 | 3.60 |
6682 | 7730 | 1.860399 | GCGGTATAGTGAGCGACAGTG | 60.860 | 57.143 | 0.00 | 0.00 | 42.83 | 3.66 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 6.042093 | ACTGTCATCATCTAATAATCCACCGT | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 4.83 |
87 | 88 | 1.373570 | CTGAATCGGGAGGCTTTGTC | 58.626 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
98 | 99 | 8.986477 | ATTTCTTTGTTTAAATCCTGAATCGG | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 4.18 |
155 | 157 | 4.331968 | CCTGATGCCACCACTTACTAAAA | 58.668 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
233 | 242 | 4.713553 | TGATAGAAAAGTGTGACAAGGCA | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
286 | 297 | 2.795231 | AAGTGTGGCATGCTATGACT | 57.205 | 45.000 | 18.92 | 14.52 | 39.69 | 3.41 |
328 | 340 | 6.868622 | AGTTGGTTAGCAACAGAGTCTATAG | 58.131 | 40.000 | 25.76 | 0.00 | 35.18 | 1.31 |
338 | 350 | 2.497675 | TGGCAAAAGTTGGTTAGCAACA | 59.502 | 40.909 | 25.76 | 3.95 | 35.18 | 3.33 |
355 | 367 | 1.365633 | GGCAAAATTGGTCGTGGCA | 59.634 | 52.632 | 0.00 | 0.00 | 36.61 | 4.92 |
434 | 447 | 3.267597 | ATTGAACAAGCGCCGGTGC | 62.268 | 57.895 | 32.51 | 32.51 | 0.00 | 5.01 |
453 | 466 | 0.882927 | ACAACCCAACATGTCCGACG | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
483 | 496 | 6.357240 | GCAAGATAATATTTTTCGCCGACTTC | 59.643 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
535 | 551 | 1.134699 | CCTCTGCGCACTTCCAAGATA | 60.135 | 52.381 | 5.66 | 0.00 | 0.00 | 1.98 |
536 | 552 | 0.392193 | CCTCTGCGCACTTCCAAGAT | 60.392 | 55.000 | 5.66 | 0.00 | 0.00 | 2.40 |
537 | 553 | 1.004560 | CCTCTGCGCACTTCCAAGA | 60.005 | 57.895 | 5.66 | 0.00 | 0.00 | 3.02 |
538 | 554 | 2.037136 | CCCTCTGCGCACTTCCAAG | 61.037 | 63.158 | 5.66 | 0.00 | 0.00 | 3.61 |
539 | 555 | 2.032528 | CCCTCTGCGCACTTCCAA | 59.967 | 61.111 | 5.66 | 0.00 | 0.00 | 3.53 |
540 | 556 | 2.922503 | TCCCTCTGCGCACTTCCA | 60.923 | 61.111 | 5.66 | 0.00 | 0.00 | 3.53 |
541 | 557 | 2.125350 | CTCCCTCTGCGCACTTCC | 60.125 | 66.667 | 5.66 | 0.00 | 0.00 | 3.46 |
542 | 558 | 1.446966 | GACTCCCTCTGCGCACTTC | 60.447 | 63.158 | 5.66 | 0.00 | 0.00 | 3.01 |
543 | 559 | 2.659610 | GACTCCCTCTGCGCACTT | 59.340 | 61.111 | 5.66 | 0.00 | 0.00 | 3.16 |
544 | 560 | 3.386237 | GGACTCCCTCTGCGCACT | 61.386 | 66.667 | 5.66 | 0.00 | 0.00 | 4.40 |
546 | 562 | 1.768684 | AAAAGGACTCCCTCTGCGCA | 61.769 | 55.000 | 10.98 | 10.98 | 43.48 | 6.09 |
547 | 563 | 1.003233 | AAAAGGACTCCCTCTGCGC | 60.003 | 57.895 | 0.00 | 0.00 | 43.48 | 6.09 |
548 | 564 | 0.321671 | TCAAAAGGACTCCCTCTGCG | 59.678 | 55.000 | 0.00 | 0.00 | 43.48 | 5.18 |
549 | 565 | 2.431454 | CTTCAAAAGGACTCCCTCTGC | 58.569 | 52.381 | 0.00 | 0.00 | 43.48 | 4.26 |
552 | 579 | 1.352687 | AGGCTTCAAAAGGACTCCCTC | 59.647 | 52.381 | 0.00 | 0.00 | 43.48 | 4.30 |
666 | 694 | 6.073819 | CGGGTCAAGGTTTCAAATTCAAATTC | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
672 | 700 | 3.611766 | GCTCGGGTCAAGGTTTCAAATTC | 60.612 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
821 | 928 | 8.929487 | AGGTATATTCTTTCTCCCTACTCTTTG | 58.071 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
924 | 1035 | 4.699522 | GGTGGTGGCGGAGGTGAC | 62.700 | 72.222 | 0.00 | 0.00 | 0.00 | 3.67 |
936 | 1053 | 3.217030 | ATAGGTGGGGTGGGGTGGT | 62.217 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
937 | 1054 | 2.286885 | ATAGGTGGGGTGGGGTGG | 60.287 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
938 | 1055 | 2.383601 | GGATAGGTGGGGTGGGGTG | 61.384 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
939 | 1056 | 2.043941 | GGATAGGTGGGGTGGGGT | 59.956 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
940 | 1057 | 2.776963 | GGGATAGGTGGGGTGGGG | 60.777 | 72.222 | 0.00 | 0.00 | 0.00 | 4.96 |
941 | 1058 | 2.776963 | GGGGATAGGTGGGGTGGG | 60.777 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
942 | 1059 | 2.043772 | TGGGGATAGGTGGGGTGG | 59.956 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
943 | 1060 | 2.383601 | GGTGGGGATAGGTGGGGTG | 61.384 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
944 | 1061 | 2.043941 | GGTGGGGATAGGTGGGGT | 59.956 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
1227 | 1367 | 1.996191 | GAACAGCAGAAACTAGAGGCG | 59.004 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
1228 | 1368 | 2.351455 | GGAACAGCAGAAACTAGAGGC | 58.649 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1231 | 1371 | 2.334977 | TGGGGAACAGCAGAAACTAGA | 58.665 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
1239 | 1510 | 0.179034 | GCCTAGATGGGGAACAGCAG | 60.179 | 60.000 | 0.00 | 0.00 | 38.15 | 4.24 |
1244 | 1515 | 4.838986 | TCTACATAAGCCTAGATGGGGAAC | 59.161 | 45.833 | 0.00 | 0.00 | 36.00 | 3.62 |
1367 | 1642 | 2.280389 | CCATCGGTGCCCATCTCG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
1394 | 1687 | 5.385509 | TCACAAGCTTAAATTAACAGGGC | 57.614 | 39.130 | 0.00 | 0.00 | 0.00 | 5.19 |
1568 | 1926 | 1.205460 | TTACCCAAGCCTCCAGACCC | 61.205 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1640 | 2001 | 4.381825 | CCACATCCCACACATGTTATTTGG | 60.382 | 45.833 | 0.00 | 0.33 | 31.83 | 3.28 |
1662 | 2023 | 4.338379 | AGAAATTACTAGCACGGATCCC | 57.662 | 45.455 | 6.06 | 0.00 | 0.00 | 3.85 |
1764 | 2147 | 5.893518 | TTGAGGGACAAGCTTGGGACAAG | 62.894 | 52.174 | 29.18 | 3.71 | 37.48 | 3.16 |
1765 | 2148 | 4.092026 | TTGAGGGACAAGCTTGGGACAA | 62.092 | 50.000 | 29.18 | 21.59 | 37.48 | 3.18 |
1766 | 2149 | 1.059584 | TGAGGGACAAGCTTGGGACA | 61.060 | 55.000 | 29.18 | 17.71 | 0.00 | 4.02 |
1767 | 2150 | 0.110486 | TTGAGGGACAAGCTTGGGAC | 59.890 | 55.000 | 29.18 | 18.90 | 34.20 | 4.46 |
1768 | 2151 | 0.850100 | TTTGAGGGACAAGCTTGGGA | 59.150 | 50.000 | 29.18 | 4.51 | 39.77 | 4.37 |
1769 | 2152 | 1.547372 | CATTTGAGGGACAAGCTTGGG | 59.453 | 52.381 | 29.18 | 6.83 | 39.77 | 4.12 |
1770 | 2153 | 1.547372 | CCATTTGAGGGACAAGCTTGG | 59.453 | 52.381 | 29.18 | 12.28 | 39.77 | 3.61 |
1771 | 2154 | 2.517959 | TCCATTTGAGGGACAAGCTTG | 58.482 | 47.619 | 24.84 | 24.84 | 39.77 | 4.01 |
1772 | 2155 | 2.978156 | TCCATTTGAGGGACAAGCTT | 57.022 | 45.000 | 0.00 | 0.00 | 39.77 | 3.74 |
1773 | 2156 | 2.042162 | ACATCCATTTGAGGGACAAGCT | 59.958 | 45.455 | 0.00 | 0.00 | 39.77 | 3.74 |
1774 | 2157 | 2.450476 | ACATCCATTTGAGGGACAAGC | 58.550 | 47.619 | 0.00 | 0.00 | 39.77 | 4.01 |
1775 | 2158 | 5.688807 | AGATACATCCATTTGAGGGACAAG | 58.311 | 41.667 | 0.00 | 0.00 | 39.77 | 3.16 |
1776 | 2159 | 5.715439 | AGATACATCCATTTGAGGGACAA | 57.285 | 39.130 | 0.00 | 0.00 | 37.23 | 3.18 |
1777 | 2160 | 5.221722 | GCTAGATACATCCATTTGAGGGACA | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.02 |
1778 | 2161 | 5.221722 | TGCTAGATACATCCATTTGAGGGAC | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.46 |
1779 | 2162 | 4.907269 | TGCTAGATACATCCATTTGAGGGA | 59.093 | 41.667 | 0.00 | 0.00 | 39.14 | 4.20 |
1780 | 2163 | 4.999950 | GTGCTAGATACATCCATTTGAGGG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1781 | 2164 | 5.862845 | AGTGCTAGATACATCCATTTGAGG | 58.137 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1782 | 2165 | 8.147058 | AGTTAGTGCTAGATACATCCATTTGAG | 58.853 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1783 | 2166 | 8.023021 | AGTTAGTGCTAGATACATCCATTTGA | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1784 | 2167 | 8.554528 | CAAGTTAGTGCTAGATACATCCATTTG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1785 | 2168 | 7.716998 | CCAAGTTAGTGCTAGATACATCCATTT | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1786 | 2169 | 7.147479 | ACCAAGTTAGTGCTAGATACATCCATT | 60.147 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1787 | 2170 | 6.327626 | ACCAAGTTAGTGCTAGATACATCCAT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1788 | 2171 | 5.661312 | ACCAAGTTAGTGCTAGATACATCCA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1789 | 2172 | 5.986135 | CACCAAGTTAGTGCTAGATACATCC | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1790 | 2173 | 5.986135 | CCACCAAGTTAGTGCTAGATACATC | 59.014 | 44.000 | 0.00 | 0.00 | 33.75 | 3.06 |
1791 | 2174 | 5.425539 | ACCACCAAGTTAGTGCTAGATACAT | 59.574 | 40.000 | 0.00 | 0.00 | 33.75 | 2.29 |
1792 | 2175 | 4.775780 | ACCACCAAGTTAGTGCTAGATACA | 59.224 | 41.667 | 0.00 | 0.00 | 33.75 | 2.29 |
1793 | 2176 | 5.340439 | ACCACCAAGTTAGTGCTAGATAC | 57.660 | 43.478 | 0.00 | 0.00 | 33.75 | 2.24 |
1794 | 2177 | 6.429151 | TCTACCACCAAGTTAGTGCTAGATA | 58.571 | 40.000 | 3.26 | 0.00 | 30.87 | 1.98 |
1795 | 2178 | 5.269991 | TCTACCACCAAGTTAGTGCTAGAT | 58.730 | 41.667 | 3.26 | 0.00 | 30.87 | 1.98 |
1796 | 2179 | 4.669700 | TCTACCACCAAGTTAGTGCTAGA | 58.330 | 43.478 | 3.26 | 3.26 | 32.55 | 2.43 |
1797 | 2180 | 5.599999 | ATCTACCACCAAGTTAGTGCTAG | 57.400 | 43.478 | 0.00 | 0.00 | 33.75 | 3.42 |
1798 | 2181 | 5.953548 | TGTATCTACCACCAAGTTAGTGCTA | 59.046 | 40.000 | 0.00 | 0.00 | 33.75 | 3.49 |
1799 | 2182 | 4.775780 | TGTATCTACCACCAAGTTAGTGCT | 59.224 | 41.667 | 0.00 | 0.00 | 33.75 | 4.40 |
1800 | 2183 | 5.080969 | TGTATCTACCACCAAGTTAGTGC | 57.919 | 43.478 | 0.00 | 0.00 | 33.75 | 4.40 |
1801 | 2184 | 6.127168 | TGGATGTATCTACCACCAAGTTAGTG | 60.127 | 42.308 | 0.00 | 0.00 | 31.23 | 2.74 |
1802 | 2185 | 5.962031 | TGGATGTATCTACCACCAAGTTAGT | 59.038 | 40.000 | 0.00 | 0.00 | 31.23 | 2.24 |
1803 | 2186 | 6.479972 | TGGATGTATCTACCACCAAGTTAG | 57.520 | 41.667 | 0.00 | 0.00 | 31.23 | 2.34 |
1804 | 2187 | 7.446106 | AATGGATGTATCTACCACCAAGTTA | 57.554 | 36.000 | 0.00 | 0.00 | 36.49 | 2.24 |
1805 | 2188 | 5.975988 | ATGGATGTATCTACCACCAAGTT | 57.024 | 39.130 | 0.00 | 0.00 | 36.49 | 2.66 |
1806 | 2189 | 5.975988 | AATGGATGTATCTACCACCAAGT | 57.024 | 39.130 | 0.00 | 0.00 | 36.49 | 3.16 |
1807 | 2190 | 6.356556 | TCAAATGGATGTATCTACCACCAAG | 58.643 | 40.000 | 0.00 | 0.00 | 36.49 | 3.61 |
1808 | 2191 | 6.320434 | TCAAATGGATGTATCTACCACCAA | 57.680 | 37.500 | 0.00 | 0.00 | 36.49 | 3.67 |
1809 | 2192 | 5.163205 | CCTCAAATGGATGTATCTACCACCA | 60.163 | 44.000 | 0.00 | 0.00 | 36.49 | 4.17 |
1810 | 2193 | 5.308825 | CCTCAAATGGATGTATCTACCACC | 58.691 | 45.833 | 0.00 | 0.00 | 36.49 | 4.61 |
1811 | 2194 | 5.071788 | TCCCTCAAATGGATGTATCTACCAC | 59.928 | 44.000 | 0.00 | 0.00 | 36.49 | 4.16 |
1812 | 2195 | 5.071788 | GTCCCTCAAATGGATGTATCTACCA | 59.928 | 44.000 | 0.00 | 0.00 | 38.09 | 3.25 |
1813 | 2196 | 5.071788 | TGTCCCTCAAATGGATGTATCTACC | 59.928 | 44.000 | 0.00 | 0.00 | 33.65 | 3.18 |
1814 | 2197 | 6.174720 | TGTCCCTCAAATGGATGTATCTAC | 57.825 | 41.667 | 0.00 | 0.00 | 33.65 | 2.59 |
1815 | 2198 | 6.688922 | GCTTGTCCCTCAAATGGATGTATCTA | 60.689 | 42.308 | 0.00 | 0.00 | 35.48 | 1.98 |
1816 | 2199 | 5.688807 | CTTGTCCCTCAAATGGATGTATCT | 58.311 | 41.667 | 0.00 | 0.00 | 35.48 | 1.98 |
1817 | 2200 | 4.276926 | GCTTGTCCCTCAAATGGATGTATC | 59.723 | 45.833 | 0.00 | 0.00 | 35.48 | 2.24 |
1818 | 2201 | 4.079558 | AGCTTGTCCCTCAAATGGATGTAT | 60.080 | 41.667 | 0.00 | 0.00 | 35.48 | 2.29 |
1819 | 2202 | 3.266772 | AGCTTGTCCCTCAAATGGATGTA | 59.733 | 43.478 | 0.00 | 0.00 | 35.48 | 2.29 |
1820 | 2203 | 2.042162 | AGCTTGTCCCTCAAATGGATGT | 59.958 | 45.455 | 0.00 | 0.00 | 35.48 | 3.06 |
1821 | 2204 | 2.731572 | AGCTTGTCCCTCAAATGGATG | 58.268 | 47.619 | 0.00 | 0.00 | 35.48 | 3.51 |
1822 | 2205 | 3.463048 | AAGCTTGTCCCTCAAATGGAT | 57.537 | 42.857 | 0.00 | 0.00 | 35.48 | 3.41 |
1823 | 2206 | 2.978156 | AAGCTTGTCCCTCAAATGGA | 57.022 | 45.000 | 0.00 | 0.00 | 35.48 | 3.41 |
1824 | 2207 | 3.306294 | GGAAAAGCTTGTCCCTCAAATGG | 60.306 | 47.826 | 23.49 | 0.00 | 35.48 | 3.16 |
1825 | 2208 | 3.612479 | CGGAAAAGCTTGTCCCTCAAATG | 60.612 | 47.826 | 26.94 | 9.69 | 35.48 | 2.32 |
1826 | 2209 | 2.558359 | CGGAAAAGCTTGTCCCTCAAAT | 59.442 | 45.455 | 26.94 | 0.00 | 35.48 | 2.32 |
1827 | 2210 | 1.953686 | CGGAAAAGCTTGTCCCTCAAA | 59.046 | 47.619 | 26.94 | 0.00 | 35.48 | 2.69 |
1828 | 2211 | 1.604604 | CGGAAAAGCTTGTCCCTCAA | 58.395 | 50.000 | 26.94 | 0.00 | 34.61 | 3.02 |
1829 | 2212 | 0.250727 | CCGGAAAAGCTTGTCCCTCA | 60.251 | 55.000 | 26.94 | 0.00 | 0.00 | 3.86 |
1830 | 2213 | 0.036306 | TCCGGAAAAGCTTGTCCCTC | 59.964 | 55.000 | 26.94 | 5.77 | 0.00 | 4.30 |
1831 | 2214 | 0.250770 | GTCCGGAAAAGCTTGTCCCT | 60.251 | 55.000 | 26.94 | 0.00 | 0.00 | 4.20 |
1832 | 2215 | 1.574702 | CGTCCGGAAAAGCTTGTCCC | 61.575 | 60.000 | 26.94 | 13.97 | 0.00 | 4.46 |
1833 | 2216 | 1.574702 | CCGTCCGGAAAAGCTTGTCC | 61.575 | 60.000 | 24.00 | 24.00 | 37.50 | 4.02 |
1834 | 2217 | 0.601841 | TCCGTCCGGAAAAGCTTGTC | 60.602 | 55.000 | 5.23 | 8.23 | 42.05 | 3.18 |
1835 | 2218 | 0.602905 | CTCCGTCCGGAAAAGCTTGT | 60.603 | 55.000 | 5.23 | 0.00 | 44.66 | 3.16 |
1836 | 2219 | 1.298859 | CCTCCGTCCGGAAAAGCTTG | 61.299 | 60.000 | 5.23 | 0.00 | 44.66 | 4.01 |
1837 | 2220 | 1.003718 | CCTCCGTCCGGAAAAGCTT | 60.004 | 57.895 | 5.23 | 0.00 | 44.66 | 3.74 |
1838 | 2221 | 2.663196 | CCTCCGTCCGGAAAAGCT | 59.337 | 61.111 | 5.23 | 0.00 | 44.66 | 3.74 |
1839 | 2222 | 2.436115 | CCCTCCGTCCGGAAAAGC | 60.436 | 66.667 | 5.23 | 0.00 | 44.66 | 3.51 |
1840 | 2223 | 1.218316 | CTCCCTCCGTCCGGAAAAG | 59.782 | 63.158 | 5.23 | 3.59 | 44.66 | 2.27 |
1841 | 2224 | 0.251742 | TACTCCCTCCGTCCGGAAAA | 60.252 | 55.000 | 5.23 | 0.00 | 44.66 | 2.29 |
1842 | 2225 | 0.032813 | ATACTCCCTCCGTCCGGAAA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 3.13 |
1843 | 2226 | 0.754217 | CATACTCCCTCCGTCCGGAA | 60.754 | 60.000 | 5.23 | 0.00 | 44.66 | 4.30 |
1844 | 2227 | 1.152819 | CATACTCCCTCCGTCCGGA | 60.153 | 63.158 | 0.00 | 0.00 | 42.90 | 5.14 |
1845 | 2228 | 2.857744 | GCATACTCCCTCCGTCCGG | 61.858 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
1846 | 2229 | 1.392710 | AAGCATACTCCCTCCGTCCG | 61.393 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1847 | 2230 | 0.105039 | CAAGCATACTCCCTCCGTCC | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1848 | 2231 | 0.824759 | ACAAGCATACTCCCTCCGTC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1849 | 2232 | 2.032620 | CTACAAGCATACTCCCTCCGT | 58.967 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
1850 | 2233 | 2.307768 | TCTACAAGCATACTCCCTCCG | 58.692 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
1851 | 2234 | 3.898123 | TCATCTACAAGCATACTCCCTCC | 59.102 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1852 | 2235 | 5.736951 | ATCATCTACAAGCATACTCCCTC | 57.263 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1853 | 2236 | 7.805083 | AATATCATCTACAAGCATACTCCCT | 57.195 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1854 | 2237 | 8.972127 | TCTAATATCATCTACAAGCATACTCCC | 58.028 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1881 | 2264 | 3.926616 | TCAGTAAAGCTGCTGGTACTTC | 58.073 | 45.455 | 18.58 | 1.80 | 44.66 | 3.01 |
1893 | 2276 | 7.599245 | ACACACTAGTCATTTACTCAGTAAAGC | 59.401 | 37.037 | 15.20 | 8.26 | 40.58 | 3.51 |
1898 | 2281 | 6.183360 | ACACACACACTAGTCATTTACTCAGT | 60.183 | 38.462 | 0.00 | 0.00 | 39.80 | 3.41 |
1900 | 2283 | 5.983118 | CACACACACACTAGTCATTTACTCA | 59.017 | 40.000 | 0.00 | 0.00 | 39.80 | 3.41 |
1939 | 2322 | 2.282110 | CATCCCGCACAACACCCA | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 4.51 |
2324 | 2713 | 4.683334 | GTGCTGTTGCCGGCGAAC | 62.683 | 66.667 | 20.60 | 23.75 | 46.53 | 3.95 |
2414 | 2803 | 1.256812 | TCACCTGAGCACGAGATGAA | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2469 | 2866 | 8.257306 | GGACAATATTTACCAACAACCATCATT | 58.743 | 33.333 | 3.59 | 0.00 | 0.00 | 2.57 |
2472 | 2869 | 7.257722 | CAGGACAATATTTACCAACAACCATC | 58.742 | 38.462 | 9.46 | 0.00 | 0.00 | 3.51 |
2576 | 2973 | 6.515862 | GCTCTAATGATGACGACCTGATAAGT | 60.516 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
2577 | 2974 | 5.861251 | GCTCTAATGATGACGACCTGATAAG | 59.139 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2578 | 2975 | 5.279006 | GGCTCTAATGATGACGACCTGATAA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2580 | 2977 | 3.006323 | GGCTCTAATGATGACGACCTGAT | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2581 | 2978 | 2.362397 | GGCTCTAATGATGACGACCTGA | 59.638 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2582 | 2979 | 2.363680 | AGGCTCTAATGATGACGACCTG | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2583 | 2980 | 2.672098 | AGGCTCTAATGATGACGACCT | 58.328 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2584 | 2981 | 3.460857 | AAGGCTCTAATGATGACGACC | 57.539 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
2586 | 2983 | 8.367911 | ACATATTAAAGGCTCTAATGATGACGA | 58.632 | 33.333 | 3.32 | 0.00 | 0.00 | 4.20 |
2587 | 2984 | 8.539770 | ACATATTAAAGGCTCTAATGATGACG | 57.460 | 34.615 | 3.32 | 0.00 | 0.00 | 4.35 |
2630 | 3027 | 8.560355 | TTCGATGAAGGAAATTAGATGACAAA | 57.440 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2633 | 3030 | 9.050601 | AGAATTCGATGAAGGAAATTAGATGAC | 57.949 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2642 | 3039 | 5.902613 | AATGCAGAATTCGATGAAGGAAA | 57.097 | 34.783 | 0.00 | 0.00 | 0.00 | 3.13 |
2702 | 3099 | 1.838077 | CGGGGGAGGAAAGTTATCTGT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2717 | 3114 | 0.824182 | TAGGCAACAAACAACGGGGG | 60.824 | 55.000 | 0.00 | 0.00 | 41.41 | 5.40 |
2733 | 3130 | 2.354821 | GTGCCAAACGAGCCTAAATAGG | 59.645 | 50.000 | 1.92 | 1.92 | 46.42 | 2.57 |
2754 | 3151 | 7.329499 | AGCTAGATTATCATAATCCACTGCAG | 58.671 | 38.462 | 13.48 | 13.48 | 0.00 | 4.41 |
2759 | 3156 | 9.507329 | TGGAAAAGCTAGATTATCATAATCCAC | 57.493 | 33.333 | 13.01 | 4.27 | 0.00 | 4.02 |
3162 | 3565 | 2.834638 | AATCACTGGAATTCAGGGGG | 57.165 | 50.000 | 7.93 | 0.00 | 46.67 | 5.40 |
3163 | 3566 | 3.435601 | CCCTAATCACTGGAATTCAGGGG | 60.436 | 52.174 | 13.15 | 4.52 | 46.67 | 4.79 |
3167 | 3570 | 5.779241 | AGTTCCCTAATCACTGGAATTCA | 57.221 | 39.130 | 7.93 | 0.00 | 40.11 | 2.57 |
3168 | 3571 | 9.660180 | GATATAGTTCCCTAATCACTGGAATTC | 57.340 | 37.037 | 0.00 | 0.00 | 40.11 | 2.17 |
3192 | 3795 | 8.689972 | CCTTTTGAAAAGGCAAGTATATCAGAT | 58.310 | 33.333 | 22.36 | 0.00 | 0.00 | 2.90 |
3193 | 3796 | 7.669722 | ACCTTTTGAAAAGGCAAGTATATCAGA | 59.330 | 33.333 | 30.92 | 0.00 | 41.10 | 3.27 |
3489 | 4353 | 8.310382 | TGCATAATGTGGTTAAGCAAATAAACT | 58.690 | 29.630 | 10.68 | 0.00 | 42.21 | 2.66 |
3498 | 4362 | 7.260603 | AGAAAGAATGCATAATGTGGTTAAGC | 58.739 | 34.615 | 0.00 | 0.00 | 37.48 | 3.09 |
3502 | 4366 | 6.869913 | CACAAGAAAGAATGCATAATGTGGTT | 59.130 | 34.615 | 0.00 | 0.00 | 33.76 | 3.67 |
3532 | 4396 | 5.188948 | ACAAGGCCACTGTAATACTACATGA | 59.811 | 40.000 | 5.01 | 0.00 | 37.41 | 3.07 |
3533 | 4397 | 5.428253 | ACAAGGCCACTGTAATACTACATG | 58.572 | 41.667 | 5.01 | 0.00 | 37.41 | 3.21 |
3855 | 4741 | 8.230472 | CTGAAAGTGGATAATTAGCATTTCCT | 57.770 | 34.615 | 16.20 | 0.00 | 0.00 | 3.36 |
3945 | 4831 | 6.941436 | TGCTGCCTTTAATCAAATTGGAAATT | 59.059 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
4420 | 5314 | 2.169832 | AACACCCACTCATTCTCACG | 57.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4421 | 5315 | 7.103641 | TCTATTTAACACCCACTCATTCTCAC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
4901 | 5910 | 5.559427 | AAGGGCAATTTCACAAAAACAAC | 57.441 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
4973 | 5982 | 5.878406 | ACAGATCCTAAACAGTCCCTATG | 57.122 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 |
5010 | 6019 | 1.352352 | CACCACCCTCCATCTTGAGTT | 59.648 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5190 | 6199 | 7.980662 | TGTGATATTTTTGCCATTATGTTGGAG | 59.019 | 33.333 | 0.18 | 0.00 | 39.25 | 3.86 |
5221 | 6230 | 5.142061 | TGTGAAATGAAGCTCAATGCATT | 57.858 | 34.783 | 5.99 | 5.99 | 45.94 | 3.56 |
5254 | 6263 | 8.961294 | ACAAGATGTAACTCTCTATACGTACT | 57.039 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
5255 | 6264 | 9.044150 | AGACAAGATGTAACTCTCTATACGTAC | 57.956 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5256 | 6265 | 9.610705 | AAGACAAGATGTAACTCTCTATACGTA | 57.389 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
5257 | 6266 | 8.399425 | CAAGACAAGATGTAACTCTCTATACGT | 58.601 | 37.037 | 0.00 | 0.00 | 0.00 | 3.57 |
5258 | 6267 | 8.399425 | ACAAGACAAGATGTAACTCTCTATACG | 58.601 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
5295 | 6304 | 0.463295 | CTCATGCGGCCAAGTGATCT | 60.463 | 55.000 | 2.24 | 0.00 | 0.00 | 2.75 |
5296 | 6305 | 2.020131 | CTCATGCGGCCAAGTGATC | 58.980 | 57.895 | 2.24 | 0.00 | 0.00 | 2.92 |
5297 | 6306 | 2.117156 | GCTCATGCGGCCAAGTGAT | 61.117 | 57.895 | 2.24 | 0.00 | 0.00 | 3.06 |
5298 | 6307 | 2.747460 | GCTCATGCGGCCAAGTGA | 60.747 | 61.111 | 2.24 | 1.82 | 0.00 | 3.41 |
5386 | 6395 | 0.914644 | ATGACACCTATGCTGCTGGT | 59.085 | 50.000 | 0.00 | 3.98 | 33.87 | 4.00 |
5733 | 6743 | 2.095263 | CCACACCCGCTTCAATAACTTG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5736 | 6746 | 1.737793 | CTCCACACCCGCTTCAATAAC | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
5750 | 6760 | 1.342074 | CAGAACCAGGAGACTCCACA | 58.658 | 55.000 | 23.60 | 0.00 | 39.61 | 4.17 |
5771 | 6781 | 4.498520 | AGCGACCGATCAGCCGTG | 62.499 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
5772 | 6782 | 4.498520 | CAGCGACCGATCAGCCGT | 62.499 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
5792 | 6802 | 2.747446 | ACATAACAACAATCCTGGCGAC | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
5793 | 6803 | 3.066291 | ACATAACAACAATCCTGGCGA | 57.934 | 42.857 | 0.00 | 0.00 | 0.00 | 5.54 |
5834 | 6844 | 7.596248 | CAGAACAATTTTAACAGCAGCATAAGT | 59.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
5862 | 6872 | 8.511604 | ACTCCCACAAACAATATTAGATTCAG | 57.488 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
5864 | 6874 | 9.573133 | CAAACTCCCACAAACAATATTAGATTC | 57.427 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5866 | 6876 | 7.178274 | TGCAAACTCCCACAAACAATATTAGAT | 59.822 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
5898 | 6910 | 3.620929 | TTATTCTAGTGCTCGGCGTAG | 57.379 | 47.619 | 6.85 | 4.28 | 0.00 | 3.51 |
5921 | 6933 | 3.314553 | ACACTTCGACATACAGGAAACG | 58.685 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
5989 | 7005 | 3.388024 | AGCTGTTGAGGTACTGAAGAACA | 59.612 | 43.478 | 0.00 | 0.00 | 41.55 | 3.18 |
6005 | 7021 | 7.040892 | CCAGCATTACATTACATCATAGCTGTT | 60.041 | 37.037 | 0.00 | 0.00 | 42.91 | 3.16 |
6042 | 7058 | 4.020396 | ACAATAAAATCCAGCATTGCCACA | 60.020 | 37.500 | 4.70 | 0.00 | 32.76 | 4.17 |
6080 | 7096 | 7.112779 | CCAGGATTACAGATCTTTACAAGGTT | 58.887 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
6105 | 7121 | 1.145803 | GACGGTACAAAGCTGTGGAC | 58.854 | 55.000 | 11.22 | 11.22 | 36.96 | 4.02 |
6107 | 7123 | 0.319211 | TCGACGGTACAAAGCTGTGG | 60.319 | 55.000 | 9.18 | 0.00 | 36.96 | 4.17 |
6109 | 7125 | 3.129813 | TGATATCGACGGTACAAAGCTGT | 59.870 | 43.478 | 0.00 | 0.00 | 39.75 | 4.40 |
6153 | 7169 | 3.876914 | TGTCTGAAACCAGTCACATGTTC | 59.123 | 43.478 | 0.00 | 0.00 | 33.49 | 3.18 |
6177 | 7193 | 8.394667 | GCATGTTAGCCTTTATGTTTTAGAAC | 57.605 | 34.615 | 0.00 | 0.00 | 36.29 | 3.01 |
6232 | 7276 | 8.163408 | TCTAAAGAAAAGATTCCCTTGTGATGA | 58.837 | 33.333 | 0.00 | 0.00 | 36.12 | 2.92 |
6240 | 7284 | 7.177878 | TCAAGCATCTAAAGAAAAGATTCCCT | 58.822 | 34.615 | 0.00 | 0.00 | 36.12 | 4.20 |
6283 | 7327 | 8.531982 | TGATATAAGACTGCTTGTGAGTACTTT | 58.468 | 33.333 | 0.00 | 0.00 | 35.56 | 2.66 |
6318 | 7362 | 7.437713 | TCCTACCTTACAGACATGATGATTT | 57.562 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
6319 | 7363 | 7.448420 | CATCCTACCTTACAGACATGATGATT | 58.552 | 38.462 | 0.00 | 0.00 | 31.12 | 2.57 |
6372 | 7418 | 9.396022 | GTTCAGAAATTCCATCCATACTTTCTA | 57.604 | 33.333 | 0.00 | 0.00 | 33.07 | 2.10 |
6438 | 7484 | 6.884280 | ATAAACTTCCTTCCTGAAAGTGTG | 57.116 | 37.500 | 0.00 | 0.00 | 32.69 | 3.82 |
6439 | 7485 | 7.829706 | GGATATAAACTTCCTTCCTGAAAGTGT | 59.170 | 37.037 | 0.00 | 0.00 | 32.69 | 3.55 |
6463 | 7509 | 4.041567 | TCATTCAGTAGTTCCAAAGCAGGA | 59.958 | 41.667 | 0.00 | 0.00 | 35.41 | 3.86 |
6570 | 7617 | 2.639065 | ACGAGCTCTGTTTGTTGGAAA | 58.361 | 42.857 | 12.85 | 0.00 | 0.00 | 3.13 |
6579 | 7626 | 2.230266 | GGAGAAGAGAACGAGCTCTGTT | 59.770 | 50.000 | 19.23 | 19.23 | 44.18 | 3.16 |
6583 | 7630 | 1.178276 | TGGGAGAAGAGAACGAGCTC | 58.822 | 55.000 | 2.73 | 2.73 | 35.11 | 4.09 |
6652 | 7700 | 5.499047 | GCTCACTATACCGCAATAACAAAC | 58.501 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
6655 | 7703 | 3.067040 | TCGCTCACTATACCGCAATAACA | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
6685 | 7733 | 1.835693 | GGGAAGATCTGCCCTCAGG | 59.164 | 63.158 | 29.88 | 0.00 | 41.31 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.