Multiple sequence alignment - TraesCS2D01G031800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G031800 chr2D 100.000 5814 0 0 1 5814 12685334 12691147 0.000000e+00 10737.0
1 TraesCS2D01G031800 chr2A 93.045 2516 114 29 1897 4357 14809759 14812268 0.000000e+00 3620.0
2 TraesCS2D01G031800 chr2A 89.686 1435 91 31 4414 5814 14812354 14813765 0.000000e+00 1777.0
3 TraesCS2D01G031800 chr2A 90.921 749 38 15 1156 1888 14808961 14809695 0.000000e+00 979.0
4 TraesCS2D01G031800 chr2A 89.002 491 26 15 470 944 14808028 14808506 3.020000e-162 582.0
5 TraesCS2D01G031800 chr2A 87.402 254 23 7 628 875 14780032 14780282 3.430000e-72 283.0
6 TraesCS2D01G031800 chr2B 94.888 1291 49 8 3075 4351 23115913 23117200 0.000000e+00 2002.0
7 TraesCS2D01G031800 chr2B 89.855 1311 83 26 603 1879 23113425 23114719 0.000000e+00 1639.0
8 TraesCS2D01G031800 chr2B 91.815 1124 55 16 1897 2986 23114792 23115912 0.000000e+00 1531.0
9 TraesCS2D01G031800 chr2B 91.387 685 32 15 4469 5138 23117284 23117956 0.000000e+00 913.0
10 TraesCS2D01G031800 chr2B 86.922 497 43 14 5324 5801 23117978 23118471 6.630000e-149 538.0
11 TraesCS2D01G031800 chr2B 93.333 180 11 1 1 179 23112705 23112884 1.240000e-66 265.0
12 TraesCS2D01G031800 chr7D 86.923 130 15 2 1 129 78501163 78501291 1.690000e-30 145.0
13 TraesCS2D01G031800 chr6B 92.105 38 3 0 101 138 439449727 439449690 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G031800 chr2D 12685334 12691147 5813 False 10737.0 10737 100.000000 1 5814 1 chr2D.!!$F1 5813
1 TraesCS2D01G031800 chr2A 14808028 14813765 5737 False 1739.5 3620 90.663500 470 5814 4 chr2A.!!$F2 5344
2 TraesCS2D01G031800 chr2B 23112705 23118471 5766 False 1148.0 2002 91.366667 1 5801 6 chr2B.!!$F1 5800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 522 0.250124 AAAATCGTGACGCCCAGACA 60.250 50.000 0.00 0.00 0.00 3.41 F
1888 2346 0.033504 ATGTCGGCTCGGCGAATTAT 59.966 50.000 17.13 9.39 32.50 1.28 F
2158 2699 0.321919 GCTGCCATCCTTGACAGTGA 60.322 55.000 0.00 0.00 32.65 3.41 F
2702 3273 0.409092 TTACCACTCCCTCACCGGTA 59.591 55.000 6.87 0.00 0.00 4.02 F
4048 4627 1.210722 GAAGATGGAGTCCTTGACCCC 59.789 57.143 11.33 0.00 30.79 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2460 0.040425 CGGGTGGCGAAAAAGACAAG 60.040 55.000 0.00 0.00 0.00 3.16 R
3640 4218 1.133513 TCACCACCAATCAGCCAGTTT 60.134 47.619 0.00 0.00 0.00 2.66 R
4120 4699 0.167251 CGGCGTTAATTCGTGCCTTT 59.833 50.000 0.00 0.00 45.36 3.11 R
4609 5243 0.625316 TGCTAGCATGGACCATTGGT 59.375 50.000 14.93 8.42 39.44 3.67 R
5711 6373 0.321671 TCAAAAGGACTCCCTCTGCG 59.678 55.000 0.00 0.00 43.48 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 7.461182 ACCGGAAATATTTTGAGATGACAAA 57.539 32.000 9.46 0.00 37.87 2.83
78 80 6.985645 TGACAAATTTTTGGAGATGACTTTGG 59.014 34.615 7.85 0.00 42.34 3.28
90 92 3.208747 TGACTTTGGAAACACCTCTCC 57.791 47.619 0.00 0.00 42.67 3.71
94 96 3.395941 ACTTTGGAAACACCTCTCCAGAT 59.604 43.478 0.00 0.00 42.61 2.90
102 104 5.447778 AACACCTCTCCAGATCATCAATT 57.552 39.130 0.00 0.00 0.00 2.32
117 119 9.682465 AGATCATCAATTTGAAAGAGAGATTGA 57.318 29.630 2.68 0.02 39.98 2.57
139 141 5.602978 TGAGAGGGATCAAGTACCTTAATCC 59.397 44.000 0.00 0.00 43.21 3.01
143 145 2.994186 TCAAGTACCTTAATCCCGCC 57.006 50.000 0.00 0.00 0.00 6.13
166 168 5.391097 CCGTTTGTACAAGTGTTGAGTTTGA 60.391 40.000 8.56 0.00 0.00 2.69
167 169 5.506832 CGTTTGTACAAGTGTTGAGTTTGAC 59.493 40.000 8.56 0.00 0.00 3.18
179 181 2.473609 TGAGTTTGACGCGTTCATGTAC 59.526 45.455 15.53 11.03 32.84 2.90
180 182 2.473609 GAGTTTGACGCGTTCATGTACA 59.526 45.455 15.53 0.78 32.84 2.90
181 183 2.220133 AGTTTGACGCGTTCATGTACAC 59.780 45.455 15.53 0.00 32.84 2.90
182 184 0.779408 TTGACGCGTTCATGTACACG 59.221 50.000 15.53 10.77 39.49 4.49
184 186 1.069364 TGACGCGTTCATGTACACGTA 60.069 47.619 15.53 5.22 36.98 3.57
185 187 2.179589 GACGCGTTCATGTACACGTAT 58.820 47.619 15.53 5.84 36.98 3.06
187 189 1.184268 CGCGTTCATGTACACGTATCG 59.816 52.381 0.00 1.36 38.70 2.92
188 190 2.443387 GCGTTCATGTACACGTATCGA 58.557 47.619 0.00 0.00 38.70 3.59
189 191 3.040795 GCGTTCATGTACACGTATCGAT 58.959 45.455 2.16 2.16 38.70 3.59
190 192 3.117507 GCGTTCATGTACACGTATCGATC 59.882 47.826 0.00 0.00 38.70 3.69
192 194 4.607646 CGTTCATGTACACGTATCGATCTC 59.392 45.833 0.00 0.00 0.00 2.75
193 195 4.744136 TCATGTACACGTATCGATCTCC 57.256 45.455 0.00 0.00 0.00 3.71
194 196 3.185797 TCATGTACACGTATCGATCTCCG 59.814 47.826 0.00 5.82 40.25 4.63
195 197 1.262417 TGTACACGTATCGATCTCCGC 59.738 52.381 0.00 0.00 38.37 5.54
196 198 1.530293 GTACACGTATCGATCTCCGCT 59.470 52.381 0.00 0.00 38.37 5.52
197 199 1.875009 ACACGTATCGATCTCCGCTA 58.125 50.000 0.00 0.00 38.37 4.26
198 200 2.216046 ACACGTATCGATCTCCGCTAA 58.784 47.619 0.00 0.00 38.37 3.09
199 201 2.615447 ACACGTATCGATCTCCGCTAAA 59.385 45.455 0.00 0.00 38.37 1.85
200 202 3.227147 CACGTATCGATCTCCGCTAAAG 58.773 50.000 0.00 0.00 38.37 1.85
201 203 3.059120 CACGTATCGATCTCCGCTAAAGA 60.059 47.826 0.00 0.00 38.37 2.52
202 204 3.562973 ACGTATCGATCTCCGCTAAAGAA 59.437 43.478 0.00 0.00 38.37 2.52
203 205 4.036027 ACGTATCGATCTCCGCTAAAGAAA 59.964 41.667 0.00 0.00 38.37 2.52
204 206 4.974275 CGTATCGATCTCCGCTAAAGAAAA 59.026 41.667 0.00 0.00 38.37 2.29
205 207 5.629849 CGTATCGATCTCCGCTAAAGAAAAT 59.370 40.000 0.00 0.00 38.37 1.82
206 208 5.914085 ATCGATCTCCGCTAAAGAAAATG 57.086 39.130 0.00 0.00 38.37 2.32
207 209 4.755411 TCGATCTCCGCTAAAGAAAATGT 58.245 39.130 0.00 0.00 38.37 2.71
208 210 5.898174 TCGATCTCCGCTAAAGAAAATGTA 58.102 37.500 0.00 0.00 38.37 2.29
209 211 5.747197 TCGATCTCCGCTAAAGAAAATGTAC 59.253 40.000 0.00 0.00 38.37 2.90
210 212 5.518847 CGATCTCCGCTAAAGAAAATGTACA 59.481 40.000 0.00 0.00 0.00 2.90
211 213 6.508088 CGATCTCCGCTAAAGAAAATGTACAC 60.508 42.308 0.00 0.00 0.00 2.90
212 214 5.543714 TCTCCGCTAAAGAAAATGTACACA 58.456 37.500 0.00 0.00 0.00 3.72
213 215 6.170506 TCTCCGCTAAAGAAAATGTACACAT 58.829 36.000 0.00 0.00 38.41 3.21
214 216 7.324935 TCTCCGCTAAAGAAAATGTACACATA 58.675 34.615 0.00 0.00 35.10 2.29
215 217 7.985184 TCTCCGCTAAAGAAAATGTACACATAT 59.015 33.333 0.00 0.00 35.10 1.78
216 218 8.138365 TCCGCTAAAGAAAATGTACACATATC 57.862 34.615 0.00 0.00 35.10 1.63
217 219 7.766738 TCCGCTAAAGAAAATGTACACATATCA 59.233 33.333 0.00 0.00 35.10 2.15
218 220 8.394877 CCGCTAAAGAAAATGTACACATATCAA 58.605 33.333 0.00 0.00 35.10 2.57
219 221 9.935682 CGCTAAAGAAAATGTACACATATCAAT 57.064 29.630 0.00 0.00 35.10 2.57
224 226 9.466497 AAGAAAATGTACACATATCAATCACCT 57.534 29.630 0.00 0.00 35.10 4.00
225 227 9.113838 AGAAAATGTACACATATCAATCACCTC 57.886 33.333 0.00 0.00 35.10 3.85
226 228 7.482654 AAATGTACACATATCAATCACCTCG 57.517 36.000 0.00 0.00 35.10 4.63
227 229 4.368315 TGTACACATATCAATCACCTCGC 58.632 43.478 0.00 0.00 0.00 5.03
228 230 2.838736 ACACATATCAATCACCTCGCC 58.161 47.619 0.00 0.00 0.00 5.54
229 231 2.170397 ACACATATCAATCACCTCGCCA 59.830 45.455 0.00 0.00 0.00 5.69
230 232 2.804527 CACATATCAATCACCTCGCCAG 59.195 50.000 0.00 0.00 0.00 4.85
304 306 3.369147 CGTGAAAGATGTGCGAATCTTCT 59.631 43.478 12.58 5.35 44.35 2.85
321 323 4.707105 TCTTCTGCTGATTCAAACAGTCA 58.293 39.130 13.29 0.00 37.64 3.41
331 333 9.195411 GCTGATTCAAACAGTCAATTATTTTCA 57.805 29.630 0.00 0.00 37.64 2.69
337 339 8.980610 TCAAACAGTCAATTATTTTCAATGCTG 58.019 29.630 0.00 0.00 0.00 4.41
338 340 8.980610 CAAACAGTCAATTATTTTCAATGCTGA 58.019 29.630 0.00 0.00 0.00 4.26
364 366 4.685169 TCGATTTCATGTTTTGCTCTCC 57.315 40.909 0.00 0.00 0.00 3.71
367 369 1.533625 TTCATGTTTTGCTCTCCGGG 58.466 50.000 0.00 0.00 0.00 5.73
371 386 1.375326 GTTTTGCTCTCCGGGGTCT 59.625 57.895 0.00 0.00 0.00 3.85
375 390 2.363147 GCTCTCCGGGGTCTCACT 60.363 66.667 0.00 0.00 0.00 3.41
376 391 1.985116 GCTCTCCGGGGTCTCACTT 60.985 63.158 0.00 0.00 0.00 3.16
381 396 2.738521 CGGGGTCTCACTTGCACG 60.739 66.667 0.00 0.00 0.00 5.34
389 404 4.025401 CACTTGCACGCCGGTTCC 62.025 66.667 1.90 0.00 0.00 3.62
394 409 1.739338 TTGCACGCCGGTTCCAATTT 61.739 50.000 1.90 0.00 0.00 1.82
397 412 1.135228 GCACGCCGGTTCCAATTTTAT 60.135 47.619 1.90 0.00 0.00 1.40
398 413 2.525055 CACGCCGGTTCCAATTTTATG 58.475 47.619 1.90 0.00 0.00 1.90
409 424 3.823873 TCCAATTTTATGGACGTGTGCTT 59.176 39.130 0.00 0.00 44.52 3.91
410 425 4.279671 TCCAATTTTATGGACGTGTGCTTT 59.720 37.500 0.00 0.00 44.52 3.51
416 431 1.088306 TGGACGTGTGCTTTCGTTTT 58.912 45.000 0.00 0.00 40.39 2.43
417 432 1.202087 TGGACGTGTGCTTTCGTTTTG 60.202 47.619 0.00 0.00 40.39 2.44
428 443 2.702592 TTCGTTTTGAGTGTGACCCT 57.297 45.000 0.00 0.00 0.00 4.34
430 445 4.345859 TTCGTTTTGAGTGTGACCCTAT 57.654 40.909 0.00 0.00 0.00 2.57
441 456 5.930135 AGTGTGACCCTATCCATCATAAAC 58.070 41.667 0.00 0.00 0.00 2.01
443 458 5.992217 GTGTGACCCTATCCATCATAAACTC 59.008 44.000 0.00 0.00 0.00 3.01
448 463 7.015292 TGACCCTATCCATCATAAACTCAGTAC 59.985 40.741 0.00 0.00 0.00 2.73
457 476 7.121168 CCATCATAAACTCAGTACAACCAACAT 59.879 37.037 0.00 0.00 0.00 2.71
474 493 2.427245 ATTCTGCGCGCCTCCTACT 61.427 57.895 30.77 3.50 0.00 2.57
487 506 4.079253 GCCTCCTACTGTCCAATCAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
490 509 5.065218 CCTCCTACTGTCCAATCAAAAATCG 59.935 44.000 0.00 0.00 0.00 3.34
497 516 2.095466 TCCAATCAAAAATCGTGACGCC 60.095 45.455 0.00 0.00 0.00 5.68
500 519 0.871722 TCAAAAATCGTGACGCCCAG 59.128 50.000 0.00 0.00 0.00 4.45
503 522 0.250124 AAAATCGTGACGCCCAGACA 60.250 50.000 0.00 0.00 0.00 3.41
516 535 5.606505 ACGCCCAGACAAACATTTAAAAAT 58.393 33.333 0.00 0.00 0.00 1.82
542 561 6.668541 AATCACGACCAAATGACAGATAAG 57.331 37.500 0.00 0.00 0.00 1.73
547 566 4.445718 CGACCAAATGACAGATAAGATCGG 59.554 45.833 0.00 0.00 0.00 4.18
579 601 1.412079 ACCAAACACACCATGCATGT 58.588 45.000 24.58 10.59 0.00 3.21
591 613 3.879932 CATGCATGTCATGTCAGCTAG 57.120 47.619 18.91 0.00 45.79 3.42
601 778 4.156556 GTCATGTCAGCTAGAAATGCCAAA 59.843 41.667 10.01 0.00 41.07 3.28
611 788 3.160269 AGAAATGCCAAAGGGAGTCAAG 58.840 45.455 0.00 0.00 35.59 3.02
615 792 0.402121 GCCAAAGGGAGTCAAGTCCT 59.598 55.000 3.95 0.00 36.75 3.85
668 847 9.030452 ACCCAAAACATTATGCTCACTTTATTA 57.970 29.630 0.00 0.00 0.00 0.98
771 952 1.272985 TGCCCCTTCTTTAACCCCATG 60.273 52.381 0.00 0.00 0.00 3.66
806 987 3.037549 ACATTTGGGGTCAACACAACAT 58.962 40.909 0.00 0.00 31.78 2.71
934 1128 7.729836 AGAAAAAGAAAAAGAAAAACACTCGC 58.270 30.769 0.00 0.00 0.00 5.03
996 1191 1.805945 GTCGAACACCTAGCAGGCG 60.806 63.158 0.00 0.00 39.63 5.52
1642 2084 1.303236 CCCATTTCACCCGTCTGCA 60.303 57.895 0.00 0.00 0.00 4.41
1643 2085 1.586154 CCCATTTCACCCGTCTGCAC 61.586 60.000 0.00 0.00 0.00 4.57
1644 2086 0.606401 CCATTTCACCCGTCTGCACT 60.606 55.000 0.00 0.00 0.00 4.40
1653 2105 1.200020 CCCGTCTGCACTTTCCATTTC 59.800 52.381 0.00 0.00 0.00 2.17
1681 2133 0.871722 TTGGCTCGACCGAAAACATG 59.128 50.000 0.00 0.00 43.94 3.21
1683 2135 0.872388 GGCTCGACCGAAAACATGTT 59.128 50.000 4.92 4.92 0.00 2.71
1686 2138 2.991190 GCTCGACCGAAAACATGTTCTA 59.009 45.455 12.39 0.00 0.00 2.10
1689 2141 4.370049 TCGACCGAAAACATGTTCTACAA 58.630 39.130 12.39 0.00 0.00 2.41
1706 2158 7.642194 TGTTCTACAACTTTCGTGCAAAAATAG 59.358 33.333 0.00 0.00 33.17 1.73
1709 2161 5.105752 ACAACTTTCGTGCAAAAATAGCAA 58.894 33.333 0.00 0.00 44.64 3.91
1716 2168 6.209129 TCGTGCAAAAATAGCAATGAAAAC 57.791 33.333 0.00 0.00 44.64 2.43
1717 2169 5.750547 TCGTGCAAAAATAGCAATGAAAACA 59.249 32.000 0.00 0.00 44.64 2.83
1746 2203 4.718940 ATTCCTTCAAGTTTATTGGGCG 57.281 40.909 0.00 0.00 0.00 6.13
1753 2210 3.126831 CAAGTTTATTGGGCGTGCAAAA 58.873 40.909 0.00 0.00 0.00 2.44
1758 2215 2.540265 ATTGGGCGTGCAAAATTGAA 57.460 40.000 0.00 0.00 0.00 2.69
1769 2226 6.621164 GCGTGCAAAATTGAAAATTGGATGAT 60.621 34.615 9.88 0.00 34.51 2.45
1770 2227 7.299586 CGTGCAAAATTGAAAATTGGATGATT 58.700 30.769 0.00 0.00 34.51 2.57
1771 2228 7.479291 CGTGCAAAATTGAAAATTGGATGATTC 59.521 33.333 0.00 0.00 34.51 2.52
1772 2229 8.508875 GTGCAAAATTGAAAATTGGATGATTCT 58.491 29.630 0.00 0.00 0.00 2.40
1773 2230 9.069082 TGCAAAATTGAAAATTGGATGATTCTT 57.931 25.926 0.00 0.00 0.00 2.52
1779 2236 9.740239 ATTGAAAATTGGATGATTCTTACGATG 57.260 29.630 0.00 0.00 0.00 3.84
1792 2249 4.562082 TCTTACGATGGGTGTGTACTTTG 58.438 43.478 0.00 0.00 0.00 2.77
1793 2250 2.922740 ACGATGGGTGTGTACTTTGT 57.077 45.000 0.00 0.00 0.00 2.83
1794 2251 2.489971 ACGATGGGTGTGTACTTTGTG 58.510 47.619 0.00 0.00 0.00 3.33
1795 2252 1.196808 CGATGGGTGTGTACTTTGTGC 59.803 52.381 0.00 0.00 0.00 4.57
1796 2253 1.539827 GATGGGTGTGTACTTTGTGCC 59.460 52.381 0.00 0.00 0.00 5.01
1798 2255 0.179001 GGGTGTGTACTTTGTGCCCT 60.179 55.000 0.00 0.00 0.00 5.19
1800 2257 1.235724 GTGTGTACTTTGTGCCCTCC 58.764 55.000 0.00 0.00 0.00 4.30
1801 2258 1.136828 TGTGTACTTTGTGCCCTCCT 58.863 50.000 0.00 0.00 0.00 3.69
1802 2259 2.038033 GTGTGTACTTTGTGCCCTCCTA 59.962 50.000 0.00 0.00 0.00 2.94
1804 2261 3.136809 TGTGTACTTTGTGCCCTCCTAAA 59.863 43.478 0.00 0.00 0.00 1.85
1873 2331 7.792374 TTTAGAGAATGTAGGATGCAATGTC 57.208 36.000 0.00 0.00 31.62 3.06
1879 2337 0.249447 TAGGATGCAATGTCGGCTCG 60.249 55.000 0.00 0.00 0.00 5.03
1880 2338 2.537560 GGATGCAATGTCGGCTCGG 61.538 63.158 0.00 0.00 0.00 4.63
1888 2346 0.033504 ATGTCGGCTCGGCGAATTAT 59.966 50.000 17.13 9.39 32.50 1.28
1889 2347 0.596600 TGTCGGCTCGGCGAATTATC 60.597 55.000 17.13 5.42 32.50 1.75
1893 2351 1.597663 CGGCTCGGCGAATTATCTTTT 59.402 47.619 12.13 0.00 0.00 2.27
1894 2352 2.031683 CGGCTCGGCGAATTATCTTTTT 59.968 45.455 12.13 0.00 0.00 1.94
1895 2353 3.618698 GGCTCGGCGAATTATCTTTTTC 58.381 45.455 12.13 0.00 0.00 2.29
1896 2354 3.064820 GGCTCGGCGAATTATCTTTTTCA 59.935 43.478 12.13 0.00 0.00 2.69
1897 2355 4.029043 GCTCGGCGAATTATCTTTTTCAC 58.971 43.478 12.13 0.00 0.00 3.18
1899 2357 5.673818 GCTCGGCGAATTATCTTTTTCACTT 60.674 40.000 12.13 0.00 0.00 3.16
1902 2360 7.461107 TCGGCGAATTATCTTTTTCACTTAAG 58.539 34.615 7.35 0.00 0.00 1.85
1904 2362 7.636359 CGGCGAATTATCTTTTTCACTTAAGAG 59.364 37.037 10.09 0.59 34.17 2.85
1905 2363 8.665685 GGCGAATTATCTTTTTCACTTAAGAGA 58.334 33.333 10.09 3.59 34.17 3.10
1906 2364 9.479278 GCGAATTATCTTTTTCACTTAAGAGAC 57.521 33.333 10.09 0.00 34.17 3.36
1923 2438 4.883083 AGAGACTTTATCGCAAGTTCACA 58.117 39.130 0.00 0.00 37.11 3.58
1929 2444 0.593128 ATCGCAAGTTCACAGCCAAC 59.407 50.000 0.00 0.00 39.48 3.77
1935 2450 3.810373 CAAGTTCACAGCCAACGAATAC 58.190 45.455 0.00 0.00 0.00 1.89
1945 2460 3.735181 AACGAATACGGTGCCTCTC 57.265 52.632 0.00 0.00 44.46 3.20
1958 2473 1.873591 TGCCTCTCTTGTCTTTTTCGC 59.126 47.619 0.00 0.00 0.00 4.70
1960 2475 2.494059 CCTCTCTTGTCTTTTTCGCCA 58.506 47.619 0.00 0.00 0.00 5.69
2014 2537 7.040201 TGGGAGAATTTAGCATCTTATCATTGC 60.040 37.037 0.00 0.00 36.63 3.56
2015 2538 7.311408 GGAGAATTTAGCATCTTATCATTGCC 58.689 38.462 0.00 0.00 37.07 4.52
2017 2540 6.712095 AGAATTTAGCATCTTATCATTGCCGA 59.288 34.615 0.00 0.00 37.07 5.54
2158 2699 0.321919 GCTGCCATCCTTGACAGTGA 60.322 55.000 0.00 0.00 32.65 3.41
2214 2755 2.949447 AGGATTGCCTTGTGACTTTGT 58.051 42.857 0.00 0.00 43.90 2.83
2215 2756 4.098914 AGGATTGCCTTGTGACTTTGTA 57.901 40.909 0.00 0.00 43.90 2.41
2216 2757 3.821033 AGGATTGCCTTGTGACTTTGTAC 59.179 43.478 0.00 0.00 43.90 2.90
2265 2806 2.438074 TTTAGCAGCCCCATGTGCCA 62.438 55.000 2.63 0.00 40.81 4.92
2363 2928 7.384932 GTGGAAAGGGAATAACTGTTCATTTTG 59.615 37.037 0.00 0.00 0.00 2.44
2480 3046 3.189910 CACATGTGATGTTCTCCTTGTGG 59.810 47.826 21.64 0.00 42.70 4.17
2516 3082 5.483937 TCTTCTCTTGGGTACTAAAGCATCA 59.516 40.000 0.00 0.00 0.00 3.07
2527 3093 6.367422 GGTACTAAAGCATCATATCAGCACTC 59.633 42.308 0.00 0.00 0.00 3.51
2595 3161 7.333921 CAGACAATCTAAGCATATCTGAATCCC 59.666 40.741 0.00 0.00 35.22 3.85
2702 3273 0.409092 TTACCACTCCCTCACCGGTA 59.591 55.000 6.87 0.00 0.00 4.02
2792 3363 8.897872 TTTCCTACAACTTTTAACTCTACCAG 57.102 34.615 0.00 0.00 0.00 4.00
2868 3439 6.484308 CAGTTCTGAATTTTGGGCAAAAATCT 59.516 34.615 12.82 2.47 45.73 2.40
2879 3450 1.666888 GCAAAAATCTGTCACTGGCCG 60.667 52.381 0.00 0.00 0.00 6.13
3053 3624 1.895131 TCTGTCTGTGACATGCTAGCA 59.105 47.619 21.85 21.85 41.94 3.49
3374 3952 4.459337 CCCTTCTTAAGTGGCTTTAACTGG 59.541 45.833 1.63 0.00 0.00 4.00
3457 4035 5.853936 TGTGACAGCACTTAAATGACTAGT 58.146 37.500 0.00 0.00 45.36 2.57
3520 4098 7.033791 TCTAACGAGGTTTTCACTGATATGTC 58.966 38.462 0.00 0.00 0.00 3.06
3640 4218 1.220749 GGCGATAACACCAGCTGGA 59.779 57.895 39.19 17.61 38.94 3.86
3700 4278 5.163131 ACCCATTAAGTATAACGATGGCCTT 60.163 40.000 3.32 0.00 36.72 4.35
3787 4365 6.446318 TGTATTTGCATTCCAGTTGAGAAAC 58.554 36.000 0.00 0.00 0.00 2.78
3913 4491 2.086869 ACAAAAGCTGATGATGTCCCG 58.913 47.619 6.04 0.00 0.00 5.14
4048 4627 1.210722 GAAGATGGAGTCCTTGACCCC 59.789 57.143 11.33 0.00 30.79 4.95
4078 4657 6.350277 CCACTATCGTGTCTATATTTCCCTCC 60.350 46.154 0.00 0.00 39.55 4.30
4100 4679 2.035449 CCAATGCATTATGCTGGTCCAG 59.965 50.000 18.44 15.15 45.31 3.86
4253 4832 3.774599 CTAAGCATGGCCCCCGGTC 62.775 68.421 0.00 0.00 0.00 4.79
4297 4876 4.403432 CCCTTCAAGGTATTTGATGCACAT 59.597 41.667 1.78 0.00 44.90 3.21
4300 4879 7.201938 CCCTTCAAGGTATTTGATGCACATAAT 60.202 37.037 1.78 0.00 44.90 1.28
4301 4880 8.849168 CCTTCAAGGTATTTGATGCACATAATA 58.151 33.333 0.00 0.00 44.90 0.98
4311 4890 6.191657 TGATGCACATAATACTCCTTCCAT 57.808 37.500 0.00 0.00 0.00 3.41
4312 4891 5.999600 TGATGCACATAATACTCCTTCCATG 59.000 40.000 0.00 0.00 0.00 3.66
4327 4912 7.040409 ACTCCTTCCATGTTTATTGTCAAAGTC 60.040 37.037 0.00 0.00 0.00 3.01
4328 4913 6.775142 TCCTTCCATGTTTATTGTCAAAGTCA 59.225 34.615 0.00 0.00 0.00 3.41
4332 4917 6.029607 CCATGTTTATTGTCAAAGTCATCCG 58.970 40.000 0.00 0.00 0.00 4.18
4343 4928 6.040247 GTCAAAGTCATCCGGTTTTTCTTTT 58.960 36.000 0.00 0.00 0.00 2.27
4354 4988 7.501844 TCCGGTTTTTCTTTTGTTGGATAATT 58.498 30.769 0.00 0.00 0.00 1.40
4356 4990 7.439655 CCGGTTTTTCTTTTGTTGGATAATTCA 59.560 33.333 0.00 0.00 0.00 2.57
4357 4991 8.487176 CGGTTTTTCTTTTGTTGGATAATTCAG 58.513 33.333 0.00 0.00 0.00 3.02
4358 4992 8.282592 GGTTTTTCTTTTGTTGGATAATTCAGC 58.717 33.333 0.00 0.00 0.00 4.26
4366 5000 7.887996 TTGTTGGATAATTCAGCAATTGTTC 57.112 32.000 7.40 0.00 33.95 3.18
4371 5005 5.127682 GGATAATTCAGCAATTGTTCCCACT 59.872 40.000 7.40 0.00 33.48 4.00
4375 5009 4.057406 TCAGCAATTGTTCCCACTTTTG 57.943 40.909 7.40 0.00 0.00 2.44
4379 5013 5.049954 CAGCAATTGTTCCCACTTTTGAATG 60.050 40.000 7.40 0.00 0.00 2.67
4380 5014 4.815846 GCAATTGTTCCCACTTTTGAATGT 59.184 37.500 7.40 0.00 0.00 2.71
4381 5015 5.277442 GCAATTGTTCCCACTTTTGAATGTG 60.277 40.000 7.40 3.51 34.79 3.21
4382 5016 5.612725 ATTGTTCCCACTTTTGAATGTGT 57.387 34.783 8.39 0.00 33.60 3.72
4383 5017 5.413309 TTGTTCCCACTTTTGAATGTGTT 57.587 34.783 8.39 0.00 33.60 3.32
4384 5018 6.531503 TTGTTCCCACTTTTGAATGTGTTA 57.468 33.333 8.39 0.00 33.60 2.41
4385 5019 6.723298 TGTTCCCACTTTTGAATGTGTTAT 57.277 33.333 8.39 0.00 33.60 1.89
4386 5020 6.511416 TGTTCCCACTTTTGAATGTGTTATG 58.489 36.000 8.39 0.00 33.60 1.90
4389 5023 4.244862 CCACTTTTGAATGTGTTATGCCC 58.755 43.478 8.39 0.00 33.60 5.36
4391 5025 4.925054 CACTTTTGAATGTGTTATGCCCTG 59.075 41.667 2.57 0.00 31.57 4.45
4392 5026 4.588528 ACTTTTGAATGTGTTATGCCCTGT 59.411 37.500 0.00 0.00 0.00 4.00
4393 5027 5.772672 ACTTTTGAATGTGTTATGCCCTGTA 59.227 36.000 0.00 0.00 0.00 2.74
4394 5028 5.895636 TTTGAATGTGTTATGCCCTGTAG 57.104 39.130 0.00 0.00 0.00 2.74
4395 5029 4.835284 TGAATGTGTTATGCCCTGTAGA 57.165 40.909 0.00 0.00 0.00 2.59
4396 5030 4.513442 TGAATGTGTTATGCCCTGTAGAC 58.487 43.478 0.00 0.00 0.00 2.59
4397 5031 4.225042 TGAATGTGTTATGCCCTGTAGACT 59.775 41.667 0.00 0.00 0.00 3.24
4398 5032 4.844349 ATGTGTTATGCCCTGTAGACTT 57.156 40.909 0.00 0.00 0.00 3.01
4399 5033 3.937814 TGTGTTATGCCCTGTAGACTTG 58.062 45.455 0.00 0.00 0.00 3.16
4400 5034 3.326588 TGTGTTATGCCCTGTAGACTTGT 59.673 43.478 0.00 0.00 0.00 3.16
4401 5035 4.202419 TGTGTTATGCCCTGTAGACTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
4402 5036 4.392138 GTGTTATGCCCTGTAGACTTGTTC 59.608 45.833 0.00 0.00 0.00 3.18
4403 5037 4.041075 TGTTATGCCCTGTAGACTTGTTCA 59.959 41.667 0.00 0.00 0.00 3.18
4404 5038 2.839486 TGCCCTGTAGACTTGTTCAG 57.161 50.000 0.00 0.00 0.00 3.02
4405 5039 1.270839 TGCCCTGTAGACTTGTTCAGC 60.271 52.381 0.00 0.00 0.00 4.26
4406 5040 1.270839 GCCCTGTAGACTTGTTCAGCA 60.271 52.381 0.00 0.00 0.00 4.41
4407 5041 2.616510 GCCCTGTAGACTTGTTCAGCAT 60.617 50.000 0.00 0.00 0.00 3.79
4408 5042 3.679389 CCCTGTAGACTTGTTCAGCATT 58.321 45.455 0.00 0.00 0.00 3.56
4409 5043 4.074970 CCCTGTAGACTTGTTCAGCATTT 58.925 43.478 0.00 0.00 0.00 2.32
4410 5044 4.154918 CCCTGTAGACTTGTTCAGCATTTC 59.845 45.833 0.00 0.00 0.00 2.17
4411 5045 4.756642 CCTGTAGACTTGTTCAGCATTTCA 59.243 41.667 0.00 0.00 0.00 2.69
4412 5046 5.413833 CCTGTAGACTTGTTCAGCATTTCAT 59.586 40.000 0.00 0.00 0.00 2.57
4423 5057 4.204799 TCAGCATTTCATCATCTCTTGGG 58.795 43.478 0.00 0.00 0.00 4.12
4427 5061 4.439700 GCATTTCATCATCTCTTGGGTGTG 60.440 45.833 0.00 0.00 0.00 3.82
4437 5071 4.894784 TCTCTTGGGTGTGTTACTCATTC 58.105 43.478 0.00 0.00 40.13 2.67
4445 5079 5.163540 GGGTGTGTTACTCATTCGTATCTCT 60.164 44.000 0.00 0.00 0.00 3.10
4446 5080 6.331061 GGTGTGTTACTCATTCGTATCTCTT 58.669 40.000 0.00 0.00 0.00 2.85
4454 5088 4.433615 TCATTCGTATCTCTTGCCACTTC 58.566 43.478 0.00 0.00 0.00 3.01
4455 5089 2.961526 TCGTATCTCTTGCCACTTCC 57.038 50.000 0.00 0.00 0.00 3.46
4457 5091 2.166459 TCGTATCTCTTGCCACTTCCTG 59.834 50.000 0.00 0.00 0.00 3.86
4458 5092 2.093973 CGTATCTCTTGCCACTTCCTGT 60.094 50.000 0.00 0.00 0.00 4.00
4459 5093 3.617531 CGTATCTCTTGCCACTTCCTGTT 60.618 47.826 0.00 0.00 0.00 3.16
4460 5094 4.381612 CGTATCTCTTGCCACTTCCTGTTA 60.382 45.833 0.00 0.00 0.00 2.41
4462 5096 5.957771 ATCTCTTGCCACTTCCTGTTATA 57.042 39.130 0.00 0.00 0.00 0.98
4463 5097 5.344743 TCTCTTGCCACTTCCTGTTATAG 57.655 43.478 0.00 0.00 0.00 1.31
4464 5098 4.777896 TCTCTTGCCACTTCCTGTTATAGT 59.222 41.667 0.00 0.00 0.00 2.12
4465 5099 5.248477 TCTCTTGCCACTTCCTGTTATAGTT 59.752 40.000 0.00 0.00 0.00 2.24
4466 5100 6.439375 TCTCTTGCCACTTCCTGTTATAGTTA 59.561 38.462 0.00 0.00 0.00 2.24
4467 5101 6.403878 TCTTGCCACTTCCTGTTATAGTTAC 58.596 40.000 0.00 0.00 0.00 2.50
4512 5146 1.442769 CAGCATATGATACGGTGGCC 58.557 55.000 6.97 0.00 0.00 5.36
4587 5221 2.105993 AGGAACCAAGGTAAGCGTTTCT 59.894 45.455 0.00 0.00 0.00 2.52
4588 5222 3.325716 AGGAACCAAGGTAAGCGTTTCTA 59.674 43.478 0.00 0.00 0.00 2.10
4590 5224 4.331992 GGAACCAAGGTAAGCGTTTCTATC 59.668 45.833 0.00 0.00 0.00 2.08
4592 5226 4.251268 ACCAAGGTAAGCGTTTCTATCAC 58.749 43.478 0.00 0.00 0.00 3.06
4593 5227 4.250464 CCAAGGTAAGCGTTTCTATCACA 58.750 43.478 0.00 0.00 0.00 3.58
4596 5230 6.128007 CCAAGGTAAGCGTTTCTATCACATTT 60.128 38.462 0.00 0.00 0.00 2.32
4598 5232 8.612619 CAAGGTAAGCGTTTCTATCACATTTAT 58.387 33.333 0.00 0.00 0.00 1.40
4599 5233 8.732746 AGGTAAGCGTTTCTATCACATTTATT 57.267 30.769 0.00 0.00 0.00 1.40
4600 5234 9.174166 AGGTAAGCGTTTCTATCACATTTATTT 57.826 29.630 0.00 0.00 0.00 1.40
4602 5236 9.769093 GTAAGCGTTTCTATCACATTTATTTGT 57.231 29.630 0.00 0.00 0.00 2.83
4605 5239 8.177663 AGCGTTTCTATCACATTTATTTGTCAG 58.822 33.333 0.00 0.00 0.00 3.51
4606 5240 7.044706 GCGTTTCTATCACATTTATTTGTCAGC 60.045 37.037 0.00 0.00 0.00 4.26
4607 5241 7.962373 CGTTTCTATCACATTTATTTGTCAGCA 59.038 33.333 0.00 0.00 0.00 4.41
4609 5243 8.791327 TTCTATCACATTTATTTGTCAGCAGA 57.209 30.769 0.00 0.00 0.00 4.26
4610 5244 8.201554 TCTATCACATTTATTTGTCAGCAGAC 57.798 34.615 1.64 1.64 45.19 3.51
4612 5246 5.069318 TCACATTTATTTGTCAGCAGACCA 58.931 37.500 6.80 0.00 44.33 4.02
4613 5247 5.534278 TCACATTTATTTGTCAGCAGACCAA 59.466 36.000 6.80 2.33 44.33 3.67
4614 5248 6.209192 TCACATTTATTTGTCAGCAGACCAAT 59.791 34.615 12.26 12.26 44.33 3.16
4615 5249 6.309494 CACATTTATTTGTCAGCAGACCAATG 59.691 38.462 15.99 13.02 44.33 2.82
4616 5250 5.389859 TTTATTTGTCAGCAGACCAATGG 57.610 39.130 15.99 0.00 44.33 3.16
4638 5272 2.012673 CCATGCTAGCAAACTGGAGAC 58.987 52.381 25.42 0.00 0.00 3.36
4639 5273 2.355513 CCATGCTAGCAAACTGGAGACT 60.356 50.000 25.42 2.27 0.00 3.24
4640 5274 3.118629 CCATGCTAGCAAACTGGAGACTA 60.119 47.826 25.42 0.00 0.00 2.59
4641 5275 3.876274 TGCTAGCAAACTGGAGACTAG 57.124 47.619 16.84 0.00 34.71 2.57
4643 5277 3.056536 TGCTAGCAAACTGGAGACTAGTG 60.057 47.826 16.84 0.00 34.21 2.74
4644 5278 3.056465 GCTAGCAAACTGGAGACTAGTGT 60.056 47.826 10.63 0.00 34.21 3.55
4662 5297 2.221981 GTGTCTGCTGCTAACAACTGAC 59.778 50.000 8.79 0.99 39.77 3.51
4672 5307 5.381757 TGCTAACAACTGACCCTACAAATT 58.618 37.500 0.00 0.00 0.00 1.82
4777 5412 6.464222 TGACTACTACAATAGCTTGCAAACT 58.536 36.000 7.62 7.62 35.69 2.66
4884 5519 4.594920 TGGTGAATGCAGGGGATTTTAAAA 59.405 37.500 2.51 2.51 0.00 1.52
4885 5520 4.935205 GGTGAATGCAGGGGATTTTAAAAC 59.065 41.667 1.97 0.00 0.00 2.43
4886 5521 4.935205 GTGAATGCAGGGGATTTTAAAACC 59.065 41.667 1.97 6.86 0.00 3.27
4887 5522 3.885724 ATGCAGGGGATTTTAAAACCG 57.114 42.857 1.97 0.00 0.00 4.44
4888 5523 2.599677 TGCAGGGGATTTTAAAACCGT 58.400 42.857 1.97 0.00 0.00 4.83
4889 5524 2.966516 TGCAGGGGATTTTAAAACCGTT 59.033 40.909 1.97 0.00 0.00 4.44
4892 5527 3.830178 CAGGGGATTTTAAAACCGTTCCT 59.170 43.478 14.84 11.42 0.00 3.36
4894 5533 4.525487 AGGGGATTTTAAAACCGTTCCTTC 59.475 41.667 14.84 9.56 0.00 3.46
5018 5657 2.298163 AGATTTTGAAGCTTGGCACTGG 59.702 45.455 2.10 0.00 0.00 4.00
5033 5672 3.630312 GGCACTGGAACTCAAAACTGTTA 59.370 43.478 0.00 0.00 0.00 2.41
5045 5684 5.747565 TCAAAACTGTTAACAGATTGAGCG 58.252 37.500 33.03 22.18 46.59 5.03
5152 5799 8.212995 TCATCCAAGATCAGACTGCAATTAATA 58.787 33.333 0.00 0.00 0.00 0.98
5228 5875 6.950842 AGATGATGACAGTCCAACTTATCAA 58.049 36.000 0.00 0.00 29.90 2.57
5261 5908 5.839621 TGTACTATATTCGACAAAGCCTCC 58.160 41.667 0.00 0.00 0.00 4.30
5396 6051 2.234414 GACATGTTTGGTTGGCATCCAT 59.766 45.455 17.58 2.07 34.75 3.41
5449 6106 5.163499 GGAAAAGTGTTTGGTTGTATCCACA 60.163 40.000 0.00 0.00 37.20 4.17
5491 6149 0.804544 TAGTCACATACGCCGCTTGC 60.805 55.000 0.00 0.00 0.00 4.01
5501 6159 0.312416 CGCCGCTTGCTATAGACTCT 59.688 55.000 3.21 0.00 38.05 3.24
5533 6191 3.535280 ACTTTTGCCACGACCAATTTT 57.465 38.095 0.00 0.00 0.00 1.82
5597 6256 1.288752 GGCAACCAAACATGTCCGG 59.711 57.895 11.09 11.09 0.00 5.14
5601 6260 1.460273 AACCAAACATGTCCGGCACC 61.460 55.000 12.31 0.00 0.00 5.01
5616 6275 1.154225 CACCGGCGCTTGTTCAATC 60.154 57.895 7.64 0.00 0.00 2.67
5646 6305 2.028925 GGGTTGTGCCGGCAAAAG 59.971 61.111 32.40 0.00 38.44 2.27
5685 6347 5.871396 TTATCTTGCGATTTACTCCCTCT 57.129 39.130 0.00 0.00 0.00 3.69
5715 6388 5.679734 AATATTATCTTGGAAGTGCGCAG 57.320 39.130 12.22 0.00 0.00 5.18
5760 6433 9.284968 CTCTACACAAGAAAAAGGGAGAAAATA 57.715 33.333 0.00 0.00 32.46 1.40
5805 6478 7.573968 GTCCCAGAGACAAAATAATGCTAAT 57.426 36.000 0.00 0.00 45.55 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 6.986231 GTGTTTCCAAAGTCATCTCCAAAAAT 59.014 34.615 0.00 0.00 0.00 1.82
78 80 4.478206 TGATGATCTGGAGAGGTGTTTC 57.522 45.455 0.00 0.00 0.00 2.78
90 92 9.723447 CAATCTCTCTTTCAAATTGATGATCTG 57.277 33.333 0.00 0.00 30.64 2.90
94 96 9.163899 CTCTCAATCTCTCTTTCAAATTGATGA 57.836 33.333 0.00 0.00 36.19 2.92
102 104 5.723405 TGATCCCTCTCAATCTCTCTTTCAA 59.277 40.000 0.00 0.00 0.00 2.69
133 135 2.469274 TGTACAAACGGCGGGATTAA 57.531 45.000 13.24 0.00 0.00 1.40
139 141 0.658897 AACACTTGTACAAACGGCGG 59.341 50.000 13.24 0.00 0.00 6.13
143 145 5.506832 GTCAAACTCAACACTTGTACAAACG 59.493 40.000 10.03 6.09 0.00 3.60
179 181 2.963498 TTAGCGGAGATCGATACGTG 57.037 50.000 15.16 1.71 39.61 4.49
180 182 3.136763 TCTTTAGCGGAGATCGATACGT 58.863 45.455 15.16 0.00 39.61 3.57
181 183 3.808116 TCTTTAGCGGAGATCGATACG 57.192 47.619 0.00 5.02 39.61 3.06
182 184 6.421202 ACATTTTCTTTAGCGGAGATCGATAC 59.579 38.462 0.00 0.00 39.61 2.24
184 186 5.360591 ACATTTTCTTTAGCGGAGATCGAT 58.639 37.500 0.00 0.00 42.43 3.59
185 187 4.755411 ACATTTTCTTTAGCGGAGATCGA 58.245 39.130 0.00 0.00 42.43 3.59
187 189 6.312918 TGTGTACATTTTCTTTAGCGGAGATC 59.687 38.462 0.00 0.00 0.00 2.75
188 190 6.170506 TGTGTACATTTTCTTTAGCGGAGAT 58.829 36.000 0.00 0.00 0.00 2.75
189 191 5.543714 TGTGTACATTTTCTTTAGCGGAGA 58.456 37.500 0.00 0.00 0.00 3.71
190 192 5.856126 TGTGTACATTTTCTTTAGCGGAG 57.144 39.130 0.00 0.00 0.00 4.63
192 194 7.915508 TGATATGTGTACATTTTCTTTAGCGG 58.084 34.615 0.00 0.00 37.76 5.52
193 195 9.935682 ATTGATATGTGTACATTTTCTTTAGCG 57.064 29.630 0.00 0.00 37.76 4.26
198 200 9.466497 AGGTGATTGATATGTGTACATTTTCTT 57.534 29.630 0.00 0.00 37.76 2.52
199 201 9.113838 GAGGTGATTGATATGTGTACATTTTCT 57.886 33.333 0.00 0.00 37.76 2.52
200 202 8.064222 CGAGGTGATTGATATGTGTACATTTTC 58.936 37.037 0.00 2.47 37.76 2.29
201 203 7.467267 GCGAGGTGATTGATATGTGTACATTTT 60.467 37.037 0.00 0.00 37.76 1.82
202 204 6.017934 GCGAGGTGATTGATATGTGTACATTT 60.018 38.462 0.00 0.00 37.76 2.32
203 205 5.466728 GCGAGGTGATTGATATGTGTACATT 59.533 40.000 0.00 0.00 37.76 2.71
204 206 4.991056 GCGAGGTGATTGATATGTGTACAT 59.009 41.667 0.00 2.75 40.22 2.29
205 207 4.368315 GCGAGGTGATTGATATGTGTACA 58.632 43.478 0.00 0.00 0.00 2.90
206 208 3.741344 GGCGAGGTGATTGATATGTGTAC 59.259 47.826 0.00 0.00 0.00 2.90
207 209 3.386402 TGGCGAGGTGATTGATATGTGTA 59.614 43.478 0.00 0.00 0.00 2.90
208 210 2.170397 TGGCGAGGTGATTGATATGTGT 59.830 45.455 0.00 0.00 0.00 3.72
209 211 2.804527 CTGGCGAGGTGATTGATATGTG 59.195 50.000 0.00 0.00 0.00 3.21
210 212 2.435805 ACTGGCGAGGTGATTGATATGT 59.564 45.455 0.00 0.00 0.00 2.29
211 213 3.117491 ACTGGCGAGGTGATTGATATG 57.883 47.619 0.00 0.00 0.00 1.78
212 214 4.152647 TCTACTGGCGAGGTGATTGATAT 58.847 43.478 0.00 0.00 0.00 1.63
213 215 3.562182 TCTACTGGCGAGGTGATTGATA 58.438 45.455 0.00 0.00 0.00 2.15
214 216 2.388735 TCTACTGGCGAGGTGATTGAT 58.611 47.619 0.00 0.00 0.00 2.57
215 217 1.847328 TCTACTGGCGAGGTGATTGA 58.153 50.000 0.00 0.00 0.00 2.57
216 218 2.672961 TTCTACTGGCGAGGTGATTG 57.327 50.000 0.00 0.00 0.00 2.67
217 219 3.260884 TCTTTTCTACTGGCGAGGTGATT 59.739 43.478 0.00 0.00 0.00 2.57
218 220 2.832129 TCTTTTCTACTGGCGAGGTGAT 59.168 45.455 0.00 0.00 0.00 3.06
219 221 2.244695 TCTTTTCTACTGGCGAGGTGA 58.755 47.619 0.00 0.00 0.00 4.02
220 222 2.743636 TCTTTTCTACTGGCGAGGTG 57.256 50.000 0.00 0.00 0.00 4.00
221 223 5.176592 GTTTATCTTTTCTACTGGCGAGGT 58.823 41.667 0.00 0.00 0.00 3.85
222 224 5.175859 TGTTTATCTTTTCTACTGGCGAGG 58.824 41.667 0.00 0.00 0.00 4.63
223 225 6.721571 TTGTTTATCTTTTCTACTGGCGAG 57.278 37.500 0.00 0.00 0.00 5.03
224 226 7.681939 ATTTGTTTATCTTTTCTACTGGCGA 57.318 32.000 0.00 0.00 0.00 5.54
225 227 9.834628 TTTATTTGTTTATCTTTTCTACTGGCG 57.165 29.630 0.00 0.00 0.00 5.69
258 260 2.957491 AGATGGTCTTCTTCTGCTCG 57.043 50.000 0.00 0.00 0.00 5.03
281 283 2.959516 AGATTCGCACATCTTTCACGA 58.040 42.857 0.00 0.00 28.19 4.35
304 306 9.195411 GAAAATAATTGACTGTTTGAATCAGCA 57.805 29.630 3.30 0.86 36.50 4.41
331 333 9.590451 AAAACATGAAATCGAAATATCAGCATT 57.410 25.926 0.00 0.00 0.00 3.56
332 334 9.027129 CAAAACATGAAATCGAAATATCAGCAT 57.973 29.630 0.00 0.00 0.00 3.79
335 337 8.624701 AGCAAAACATGAAATCGAAATATCAG 57.375 30.769 0.00 0.00 0.00 2.90
337 339 8.847444 AGAGCAAAACATGAAATCGAAATATC 57.153 30.769 0.00 0.00 0.00 1.63
338 340 7.917505 GGAGAGCAAAACATGAAATCGAAATAT 59.082 33.333 0.00 0.00 0.00 1.28
344 346 3.419915 CGGAGAGCAAAACATGAAATCG 58.580 45.455 0.00 0.00 0.00 3.34
364 366 2.738521 CGTGCAAGTGAGACCCCG 60.739 66.667 0.00 0.00 0.00 5.73
367 369 3.414700 CGGCGTGCAAGTGAGACC 61.415 66.667 0.00 0.00 0.00 3.85
371 386 2.970324 GAACCGGCGTGCAAGTGA 60.970 61.111 6.01 0.00 0.00 3.41
375 390 1.739338 AAATTGGAACCGGCGTGCAA 61.739 50.000 13.86 13.86 0.00 4.08
376 391 1.739338 AAAATTGGAACCGGCGTGCA 61.739 50.000 6.01 0.00 0.00 4.57
389 404 4.320690 CGAAAGCACACGTCCATAAAATTG 59.679 41.667 0.00 0.00 0.00 2.32
394 409 2.157834 ACGAAAGCACACGTCCATAA 57.842 45.000 0.00 0.00 38.34 1.90
397 412 1.088306 AAAACGAAAGCACACGTCCA 58.912 45.000 0.00 0.00 41.87 4.02
398 413 1.062880 TCAAAACGAAAGCACACGTCC 59.937 47.619 0.00 0.00 41.87 4.79
403 418 2.744741 TCACACTCAAAACGAAAGCACA 59.255 40.909 0.00 0.00 0.00 4.57
409 424 2.702592 AGGGTCACACTCAAAACGAA 57.297 45.000 0.00 0.00 0.00 3.85
410 425 3.306502 GGATAGGGTCACACTCAAAACGA 60.307 47.826 0.00 0.00 0.00 3.85
416 431 3.114643 TGATGGATAGGGTCACACTCA 57.885 47.619 0.00 0.00 0.00 3.41
417 432 5.808366 TTATGATGGATAGGGTCACACTC 57.192 43.478 0.00 0.00 0.00 3.51
428 443 8.084985 TGGTTGTACTGAGTTTATGATGGATA 57.915 34.615 0.00 0.00 0.00 2.59
430 445 6.367374 TGGTTGTACTGAGTTTATGATGGA 57.633 37.500 0.00 0.00 0.00 3.41
441 456 3.120546 CGCAGAATGTTGGTTGTACTGAG 60.121 47.826 0.00 0.00 39.31 3.35
443 458 2.665519 GCGCAGAATGTTGGTTGTACTG 60.666 50.000 0.30 0.00 39.31 2.74
448 463 2.082366 GCGCGCAGAATGTTGGTTG 61.082 57.895 29.10 0.00 39.31 3.77
457 476 3.068691 AGTAGGAGGCGCGCAGAA 61.069 61.111 34.42 10.23 0.00 3.02
474 493 3.608241 GCGTCACGATTTTTGATTGGACA 60.608 43.478 0.00 0.00 0.00 4.02
487 506 0.949105 GTTTGTCTGGGCGTCACGAT 60.949 55.000 0.00 0.00 0.00 3.73
490 509 0.951558 AATGTTTGTCTGGGCGTCAC 59.048 50.000 0.00 0.00 0.00 3.67
516 535 8.554835 TTATCTGTCATTTGGTCGTGATTTTA 57.445 30.769 0.00 0.00 0.00 1.52
542 561 4.497473 TGGTTTGTGATCAAAACCGATC 57.503 40.909 28.15 16.23 46.94 3.69
579 601 3.632643 TGGCATTTCTAGCTGACATGA 57.367 42.857 0.00 0.00 35.47 3.07
591 613 2.893489 ACTTGACTCCCTTTGGCATTTC 59.107 45.455 0.00 0.00 0.00 2.17
601 778 3.251484 TCAATTGAGGACTTGACTCCCT 58.749 45.455 3.38 0.00 34.06 4.20
611 788 7.655490 CATATCAAAGGGATTCAATTGAGGAC 58.345 38.462 8.41 4.41 37.44 3.85
615 792 7.421087 TTGCATATCAAAGGGATTCAATTGA 57.579 32.000 3.38 3.38 37.44 2.57
668 847 5.163258 TGCTTGTTTGGAAATGGTTTATGGT 60.163 36.000 0.00 0.00 0.00 3.55
806 987 7.068103 GGATTTGATATTGACCACACCATGTTA 59.932 37.037 0.00 0.00 0.00 2.41
1642 2084 4.284234 CCAAGAACCATGGAAATGGAAAGT 59.716 41.667 21.47 0.00 44.39 2.66
1643 2085 4.824289 CCAAGAACCATGGAAATGGAAAG 58.176 43.478 21.47 0.00 44.39 2.62
1644 2086 3.007831 GCCAAGAACCATGGAAATGGAAA 59.992 43.478 21.47 0.00 44.39 3.13
1653 2105 1.026718 GGTCGAGCCAAGAACCATGG 61.027 60.000 11.19 11.19 41.08 3.66
1681 2133 6.806120 ATTTTTGCACGAAAGTTGTAGAAC 57.194 33.333 0.00 0.00 46.40 3.01
1683 2135 6.140110 GCTATTTTTGCACGAAAGTTGTAGA 58.860 36.000 0.00 0.00 46.40 2.59
1686 2138 4.677584 TGCTATTTTTGCACGAAAGTTGT 58.322 34.783 0.00 0.00 46.40 3.32
1706 2158 5.048573 AGGAATTTTGCCATGTTTTCATTGC 60.049 36.000 0.00 0.00 45.47 3.56
1709 2161 6.297582 TGAAGGAATTTTGCCATGTTTTCAT 58.702 32.000 0.00 0.00 41.78 2.57
1716 2168 7.910441 ATAAACTTGAAGGAATTTTGCCATG 57.090 32.000 0.00 0.00 0.00 3.66
1717 2169 7.391275 CCAATAAACTTGAAGGAATTTTGCCAT 59.609 33.333 0.00 0.00 0.00 4.40
1746 2203 8.508875 AGAATCATCCAATTTTCAATTTTGCAC 58.491 29.630 0.00 0.00 0.00 4.57
1771 2228 4.151689 CACAAAGTACACACCCATCGTAAG 59.848 45.833 0.00 0.00 0.00 2.34
1772 2229 4.059511 CACAAAGTACACACCCATCGTAA 58.940 43.478 0.00 0.00 0.00 3.18
1773 2230 3.655486 CACAAAGTACACACCCATCGTA 58.345 45.455 0.00 0.00 0.00 3.43
1774 2231 2.489971 CACAAAGTACACACCCATCGT 58.510 47.619 0.00 0.00 0.00 3.73
1775 2232 1.196808 GCACAAAGTACACACCCATCG 59.803 52.381 0.00 0.00 0.00 3.84
1776 2233 1.539827 GGCACAAAGTACACACCCATC 59.460 52.381 0.00 0.00 0.00 3.51
1777 2234 1.616159 GGCACAAAGTACACACCCAT 58.384 50.000 0.00 0.00 0.00 4.00
1778 2235 0.466555 GGGCACAAAGTACACACCCA 60.467 55.000 0.00 0.00 35.84 4.51
1779 2236 0.179001 AGGGCACAAAGTACACACCC 60.179 55.000 0.00 0.00 36.04 4.61
1792 2249 0.320697 ACTGACGTTTAGGAGGGCAC 59.679 55.000 0.00 0.00 0.00 5.01
1793 2250 1.053424 AACTGACGTTTAGGAGGGCA 58.947 50.000 0.00 0.00 0.00 5.36
1794 2251 2.180432 AAACTGACGTTTAGGAGGGC 57.820 50.000 0.00 0.00 41.36 5.19
1795 2252 3.735591 TCAAAACTGACGTTTAGGAGGG 58.264 45.455 0.00 0.00 42.28 4.30
1796 2253 6.594159 ACATATCAAAACTGACGTTTAGGAGG 59.406 38.462 0.00 0.00 42.28 4.30
1798 2255 9.661563 AATACATATCAAAACTGACGTTTAGGA 57.338 29.630 0.00 0.00 42.28 2.94
1802 2259 7.955324 CGTCAATACATATCAAAACTGACGTTT 59.045 33.333 11.87 0.00 45.89 3.60
1804 2261 6.989437 CGTCAATACATATCAAAACTGACGT 58.011 36.000 11.87 0.00 45.89 4.34
1858 2316 0.541392 AGCCGACATTGCATCCTACA 59.459 50.000 0.00 0.00 0.00 2.74
1873 2331 1.217882 AAAGATAATTCGCCGAGCCG 58.782 50.000 0.00 0.00 0.00 5.52
1879 2337 8.665685 TCTCTTAAGTGAAAAAGATAATTCGCC 58.334 33.333 4.78 0.00 36.87 5.54
1880 2338 9.479278 GTCTCTTAAGTGAAAAAGATAATTCGC 57.521 33.333 8.74 0.00 36.54 4.70
1888 2346 8.709646 GCGATAAAGTCTCTTAAGTGAAAAAGA 58.290 33.333 8.74 0.00 0.00 2.52
1889 2347 8.495949 TGCGATAAAGTCTCTTAAGTGAAAAAG 58.504 33.333 8.74 0.00 0.00 2.27
1893 2351 7.152645 ACTTGCGATAAAGTCTCTTAAGTGAA 58.847 34.615 8.74 0.00 35.44 3.18
1894 2352 6.688578 ACTTGCGATAAAGTCTCTTAAGTGA 58.311 36.000 1.63 2.43 35.44 3.41
1895 2353 6.952935 ACTTGCGATAAAGTCTCTTAAGTG 57.047 37.500 1.63 0.00 35.44 3.16
1896 2354 7.116519 GTGAACTTGCGATAAAGTCTCTTAAGT 59.883 37.037 1.63 0.00 39.48 2.24
1897 2355 7.116376 TGTGAACTTGCGATAAAGTCTCTTAAG 59.884 37.037 0.00 0.00 39.48 1.85
1899 2357 6.452242 TGTGAACTTGCGATAAAGTCTCTTA 58.548 36.000 0.00 0.00 39.48 2.10
1902 2360 4.434857 GCTGTGAACTTGCGATAAAGTCTC 60.435 45.833 0.00 0.00 39.48 3.36
1904 2362 3.424962 GGCTGTGAACTTGCGATAAAGTC 60.425 47.826 0.00 0.00 39.48 3.01
1905 2363 2.484264 GGCTGTGAACTTGCGATAAAGT 59.516 45.455 0.00 0.00 42.21 2.66
1906 2364 2.483877 TGGCTGTGAACTTGCGATAAAG 59.516 45.455 0.00 0.00 0.00 1.85
1907 2365 2.499197 TGGCTGTGAACTTGCGATAAA 58.501 42.857 0.00 0.00 0.00 1.40
1908 2366 2.177394 TGGCTGTGAACTTGCGATAA 57.823 45.000 0.00 0.00 0.00 1.75
1913 2428 0.380378 TTCGTTGGCTGTGAACTTGC 59.620 50.000 0.00 0.00 0.00 4.01
1923 2438 3.884900 GCACCGTATTCGTTGGCT 58.115 55.556 0.00 0.00 35.01 4.75
1929 2444 1.135083 ACAAGAGAGGCACCGTATTCG 60.135 52.381 0.00 0.00 0.00 3.34
1935 2450 1.884235 AAAAGACAAGAGAGGCACCG 58.116 50.000 0.00 0.00 0.00 4.94
1945 2460 0.040425 CGGGTGGCGAAAAAGACAAG 60.040 55.000 0.00 0.00 0.00 3.16
1958 2473 1.602377 GACAAGAGTGTTTTCGGGTGG 59.398 52.381 0.00 0.00 38.41 4.61
1960 2475 1.489230 AGGACAAGAGTGTTTTCGGGT 59.511 47.619 0.00 0.00 38.41 5.28
2014 2537 7.218963 GCTAAGATGCTTCACTAAATTTTTCGG 59.781 37.037 0.00 0.00 0.00 4.30
2015 2538 7.965107 AGCTAAGATGCTTCACTAAATTTTTCG 59.035 33.333 0.00 0.00 40.93 3.46
2158 2699 3.584406 TGAGAGTGACATGAAAGGGACAT 59.416 43.478 0.00 0.00 0.00 3.06
2209 2750 2.755650 AGCACGAGGTCAAGTACAAAG 58.244 47.619 0.00 0.00 0.00 2.77
2210 2751 2.902705 AGCACGAGGTCAAGTACAAA 57.097 45.000 0.00 0.00 0.00 2.83
2211 2752 2.902705 AAGCACGAGGTCAAGTACAA 57.097 45.000 0.00 0.00 0.00 2.41
2212 2753 4.530710 ATTAAGCACGAGGTCAAGTACA 57.469 40.909 0.00 0.00 0.00 2.90
2213 2754 6.366877 TGTTAATTAAGCACGAGGTCAAGTAC 59.633 38.462 0.00 0.00 0.00 2.73
2214 2755 6.457355 TGTTAATTAAGCACGAGGTCAAGTA 58.543 36.000 0.00 0.00 0.00 2.24
2215 2756 5.302360 TGTTAATTAAGCACGAGGTCAAGT 58.698 37.500 0.00 0.00 0.00 3.16
2216 2757 5.856126 TGTTAATTAAGCACGAGGTCAAG 57.144 39.130 0.00 0.00 0.00 3.02
2265 2806 3.696051 AGCAATTAATGACTGGTCGCATT 59.304 39.130 0.00 0.00 38.24 3.56
2363 2928 7.334421 TGAATAAGCACAGATACCTTCAACTTC 59.666 37.037 0.00 0.00 0.00 3.01
2421 2987 1.657181 GTCGGCGCACACCAAAAAG 60.657 57.895 10.83 0.00 0.00 2.27
2492 3058 5.483937 TGATGCTTTAGTACCCAAGAGAAGA 59.516 40.000 5.93 0.00 0.00 2.87
2502 3068 6.226787 AGTGCTGATATGATGCTTTAGTACC 58.773 40.000 0.00 0.00 0.00 3.34
2516 3082 4.101741 GGGGTGACTTAAGAGTGCTGATAT 59.898 45.833 10.09 0.00 35.88 1.63
2527 3093 4.398319 ACAGTTCAATGGGGTGACTTAAG 58.602 43.478 0.00 0.00 0.00 1.85
2595 3161 6.148480 AGCTACTGCAAAGAAATGACTACTTG 59.852 38.462 0.00 0.00 42.74 3.16
2702 3273 4.443457 CCGGTAACTGGTCAATCATCAGAT 60.443 45.833 0.00 0.00 35.53 2.90
2792 3363 6.985188 TTTGAAGTACTCAACCAGATATGC 57.015 37.500 0.00 0.00 43.90 3.14
2879 3450 4.366684 CCAACTGCCCAGGTCCCC 62.367 72.222 0.00 0.00 0.00 4.81
2967 3538 7.770366 ACTTCACTTAAAATTTACCCCGAAT 57.230 32.000 0.00 0.00 0.00 3.34
3169 3740 6.446318 TCAGCACATAAATGAGTTTTTGACC 58.554 36.000 0.00 0.00 32.66 4.02
3374 3952 4.114058 TGATTGGTTGCTACTACCGTAC 57.886 45.455 0.00 0.00 38.55 3.67
3432 4010 5.424121 AGTCATTTAAGTGCTGTCACAAC 57.576 39.130 0.00 0.00 45.49 3.32
3457 4035 8.472007 AGTAATACCACAAAGGACAAATTTCA 57.528 30.769 0.00 0.00 41.22 2.69
3486 4064 5.823570 TGAAAACCTCGTTAGAATTGGACAA 59.176 36.000 0.00 0.00 0.00 3.18
3541 4119 9.542462 TCTTCTTTATTGTGAGGGTATATTTCG 57.458 33.333 0.00 0.00 0.00 3.46
3640 4218 1.133513 TCACCACCAATCAGCCAGTTT 60.134 47.619 0.00 0.00 0.00 2.66
3700 4278 2.790433 GGTGAAAGCCTGTAATGGTCA 58.210 47.619 0.00 0.00 0.00 4.02
3913 4491 2.436417 TGTTCCATTCTAACAGGCAGC 58.564 47.619 0.00 0.00 33.13 5.25
4120 4699 0.167251 CGGCGTTAATTCGTGCCTTT 59.833 50.000 0.00 0.00 45.36 3.11
4189 4768 6.404293 GGTTGTACAGATCTCTCTTCTCTGTC 60.404 46.154 7.63 2.30 44.76 3.51
4253 4832 4.096984 GGGCAATATGTTGAGTTTCTCCAG 59.903 45.833 6.35 0.00 37.53 3.86
4297 4876 9.967451 TTGACAATAAACATGGAAGGAGTATTA 57.033 29.630 0.00 0.00 0.00 0.98
4300 4879 7.942341 ACTTTGACAATAAACATGGAAGGAGTA 59.058 33.333 0.00 0.00 0.00 2.59
4301 4880 6.777580 ACTTTGACAATAAACATGGAAGGAGT 59.222 34.615 0.00 0.00 0.00 3.85
4311 4890 5.067273 ACCGGATGACTTTGACAATAAACA 58.933 37.500 9.46 0.00 0.00 2.83
4312 4891 5.622770 ACCGGATGACTTTGACAATAAAC 57.377 39.130 9.46 0.00 0.00 2.01
4327 4912 4.688021 TCCAACAAAAGAAAAACCGGATG 58.312 39.130 9.46 0.00 0.00 3.51
4328 4913 5.545063 ATCCAACAAAAGAAAAACCGGAT 57.455 34.783 9.46 0.00 0.00 4.18
4332 4917 8.282592 GCTGAATTATCCAACAAAAGAAAAACC 58.717 33.333 0.00 0.00 0.00 3.27
4343 4928 6.397272 GGAACAATTGCTGAATTATCCAACA 58.603 36.000 5.05 0.00 37.04 3.33
4366 5000 4.244862 GGCATAACACATTCAAAAGTGGG 58.755 43.478 3.50 0.00 39.99 4.61
4371 5005 6.007076 TCTACAGGGCATAACACATTCAAAA 58.993 36.000 0.00 0.00 0.00 2.44
4375 5009 4.770795 AGTCTACAGGGCATAACACATTC 58.229 43.478 0.00 0.00 0.00 2.67
4379 5013 3.939066 ACAAGTCTACAGGGCATAACAC 58.061 45.455 0.00 0.00 0.00 3.32
4380 5014 4.041075 TGAACAAGTCTACAGGGCATAACA 59.959 41.667 0.00 0.00 0.00 2.41
4381 5015 4.575885 TGAACAAGTCTACAGGGCATAAC 58.424 43.478 0.00 0.00 0.00 1.89
4382 5016 4.832248 CTGAACAAGTCTACAGGGCATAA 58.168 43.478 0.00 0.00 0.00 1.90
4383 5017 3.369471 GCTGAACAAGTCTACAGGGCATA 60.369 47.826 0.00 0.00 0.00 3.14
4384 5018 2.616510 GCTGAACAAGTCTACAGGGCAT 60.617 50.000 0.00 0.00 0.00 4.40
4385 5019 1.270839 GCTGAACAAGTCTACAGGGCA 60.271 52.381 0.00 0.00 0.00 5.36
4386 5020 1.270839 TGCTGAACAAGTCTACAGGGC 60.271 52.381 0.00 0.00 0.00 5.19
4389 5023 5.929697 TGAAATGCTGAACAAGTCTACAG 57.070 39.130 0.00 0.00 0.00 2.74
4391 5025 6.486253 TGATGAAATGCTGAACAAGTCTAC 57.514 37.500 0.00 0.00 0.00 2.59
4392 5026 7.108194 AGATGATGAAATGCTGAACAAGTCTA 58.892 34.615 0.00 0.00 0.00 2.59
4393 5027 5.944599 AGATGATGAAATGCTGAACAAGTCT 59.055 36.000 0.00 0.00 0.00 3.24
4394 5028 6.093771 AGAGATGATGAAATGCTGAACAAGTC 59.906 38.462 0.00 0.00 0.00 3.01
4395 5029 5.944599 AGAGATGATGAAATGCTGAACAAGT 59.055 36.000 0.00 0.00 0.00 3.16
4396 5030 6.438259 AGAGATGATGAAATGCTGAACAAG 57.562 37.500 0.00 0.00 0.00 3.16
4397 5031 6.349860 CCAAGAGATGATGAAATGCTGAACAA 60.350 38.462 0.00 0.00 0.00 2.83
4398 5032 5.124936 CCAAGAGATGATGAAATGCTGAACA 59.875 40.000 0.00 0.00 0.00 3.18
4399 5033 5.450137 CCCAAGAGATGATGAAATGCTGAAC 60.450 44.000 0.00 0.00 0.00 3.18
4400 5034 4.643334 CCCAAGAGATGATGAAATGCTGAA 59.357 41.667 0.00 0.00 0.00 3.02
4401 5035 4.204799 CCCAAGAGATGATGAAATGCTGA 58.795 43.478 0.00 0.00 0.00 4.26
4402 5036 3.952323 ACCCAAGAGATGATGAAATGCTG 59.048 43.478 0.00 0.00 0.00 4.41
4403 5037 3.952323 CACCCAAGAGATGATGAAATGCT 59.048 43.478 0.00 0.00 0.00 3.79
4404 5038 3.698040 ACACCCAAGAGATGATGAAATGC 59.302 43.478 0.00 0.00 0.00 3.56
4405 5039 4.703575 ACACACCCAAGAGATGATGAAATG 59.296 41.667 0.00 0.00 0.00 2.32
4406 5040 4.927049 ACACACCCAAGAGATGATGAAAT 58.073 39.130 0.00 0.00 0.00 2.17
4407 5041 4.371624 ACACACCCAAGAGATGATGAAA 57.628 40.909 0.00 0.00 0.00 2.69
4408 5042 4.371624 AACACACCCAAGAGATGATGAA 57.628 40.909 0.00 0.00 0.00 2.57
4409 5043 4.532126 AGTAACACACCCAAGAGATGATGA 59.468 41.667 0.00 0.00 0.00 2.92
4410 5044 4.836825 AGTAACACACCCAAGAGATGATG 58.163 43.478 0.00 0.00 0.00 3.07
4411 5045 4.532126 TGAGTAACACACCCAAGAGATGAT 59.468 41.667 0.00 0.00 0.00 2.45
4412 5046 3.901222 TGAGTAACACACCCAAGAGATGA 59.099 43.478 0.00 0.00 0.00 2.92
4423 5057 6.237595 GCAAGAGATACGAATGAGTAACACAC 60.238 42.308 0.00 0.00 0.00 3.82
4427 5061 5.232414 GTGGCAAGAGATACGAATGAGTAAC 59.768 44.000 0.00 0.00 0.00 2.50
4437 5071 2.093973 ACAGGAAGTGGCAAGAGATACG 60.094 50.000 0.00 0.00 0.00 3.06
4445 5079 6.116711 TGTAACTATAACAGGAAGTGGCAA 57.883 37.500 0.00 0.00 0.00 4.52
4446 5080 5.748670 TGTAACTATAACAGGAAGTGGCA 57.251 39.130 0.00 0.00 0.00 4.92
4462 5096 8.806429 TGGATCACATCAAAATGTATGTAACT 57.194 30.769 0.00 0.00 44.41 2.24
4463 5097 8.131100 CCTGGATCACATCAAAATGTATGTAAC 58.869 37.037 0.00 0.00 44.41 2.50
4464 5098 7.833682 ACCTGGATCACATCAAAATGTATGTAA 59.166 33.333 0.00 0.00 44.41 2.41
4465 5099 7.345691 ACCTGGATCACATCAAAATGTATGTA 58.654 34.615 0.00 0.00 44.41 2.29
4466 5100 6.189859 ACCTGGATCACATCAAAATGTATGT 58.810 36.000 0.00 0.00 44.41 2.29
4467 5101 6.704289 ACCTGGATCACATCAAAATGTATG 57.296 37.500 0.00 0.00 44.41 2.39
4479 5113 1.206878 ATGCTGCTACCTGGATCACA 58.793 50.000 0.00 0.00 0.00 3.58
4480 5114 3.007290 TCATATGCTGCTACCTGGATCAC 59.993 47.826 0.00 0.00 0.00 3.06
4483 5117 4.142071 CGTATCATATGCTGCTACCTGGAT 60.142 45.833 0.00 0.00 0.00 3.41
4512 5146 5.010415 AGGTTCAAAGAAAGCCATCTTCTTG 59.990 40.000 2.38 0.00 38.69 3.02
4587 5221 6.883756 TGGTCTGCTGACAAATAAATGTGATA 59.116 34.615 23.12 0.00 44.61 2.15
4588 5222 5.711506 TGGTCTGCTGACAAATAAATGTGAT 59.288 36.000 23.12 0.00 44.61 3.06
4590 5224 5.375417 TGGTCTGCTGACAAATAAATGTG 57.625 39.130 23.12 0.00 44.61 3.21
4592 5226 5.808540 CCATTGGTCTGCTGACAAATAAATG 59.191 40.000 21.87 19.54 43.07 2.32
4593 5227 5.481473 ACCATTGGTCTGCTGACAAATAAAT 59.519 36.000 21.87 10.56 43.07 1.40
4596 5230 4.032960 ACCATTGGTCTGCTGACAAATA 57.967 40.909 21.87 7.24 43.07 1.40
4598 5232 2.363306 ACCATTGGTCTGCTGACAAA 57.637 45.000 23.12 19.23 44.61 2.83
4609 5243 0.625316 TGCTAGCATGGACCATTGGT 59.375 50.000 14.93 8.42 39.44 3.67
4610 5244 1.766494 TTGCTAGCATGGACCATTGG 58.234 50.000 20.13 0.00 0.00 3.16
4612 5246 2.756760 CAGTTTGCTAGCATGGACCATT 59.243 45.455 20.13 0.00 0.00 3.16
4613 5247 2.372264 CAGTTTGCTAGCATGGACCAT 58.628 47.619 20.13 0.00 0.00 3.55
4614 5248 1.614051 CCAGTTTGCTAGCATGGACCA 60.614 52.381 25.42 5.24 32.55 4.02
4615 5249 1.098050 CCAGTTTGCTAGCATGGACC 58.902 55.000 25.42 9.96 32.55 4.46
4616 5250 2.012673 CTCCAGTTTGCTAGCATGGAC 58.987 52.381 27.30 20.99 35.16 4.02
4619 5253 2.983229 AGTCTCCAGTTTGCTAGCATG 58.017 47.619 20.13 14.02 0.00 4.06
4623 5257 4.739195 GACACTAGTCTCCAGTTTGCTAG 58.261 47.826 0.00 0.00 41.64 3.42
4638 5272 3.677121 CAGTTGTTAGCAGCAGACACTAG 59.323 47.826 0.00 0.00 0.00 2.57
4639 5273 3.320826 TCAGTTGTTAGCAGCAGACACTA 59.679 43.478 0.00 0.00 0.00 2.74
4640 5274 2.103094 TCAGTTGTTAGCAGCAGACACT 59.897 45.455 0.00 0.00 0.00 3.55
4641 5275 2.221981 GTCAGTTGTTAGCAGCAGACAC 59.778 50.000 12.45 0.00 40.31 3.67
4643 5277 1.801178 GGTCAGTTGTTAGCAGCAGAC 59.199 52.381 9.70 9.70 40.03 3.51
4644 5278 1.270839 GGGTCAGTTGTTAGCAGCAGA 60.271 52.381 0.00 0.00 0.00 4.26
4662 5297 4.275689 TGCGCATCTGATTAATTTGTAGGG 59.724 41.667 5.66 0.00 0.00 3.53
4799 5434 2.863137 GCTTGTCTCATACAGTAGCAGC 59.137 50.000 0.00 0.00 40.32 5.25
4801 5436 3.677148 GCAGCTTGTCTCATACAGTAGCA 60.677 47.826 0.00 0.00 42.19 3.49
5018 5657 8.773762 CTCAATCTGTTAACAGTTTTGAGTTC 57.226 34.615 37.31 8.88 45.95 3.01
5033 5672 0.602638 TTGCGACCGCTCAATCTGTT 60.603 50.000 15.61 0.00 42.51 3.16
5045 5684 6.038271 ACAGGATAATAACAGAATTTGCGACC 59.962 38.462 0.00 0.00 0.00 4.79
5152 5799 5.991606 CACTCCGTTGTGTCATAATATGGAT 59.008 40.000 0.00 0.00 33.61 3.41
5161 5808 0.603707 CTGCCACTCCGTTGTGTCAT 60.604 55.000 4.70 0.00 36.30 3.06
5191 5838 6.042093 ACTGTCATCATCTAATAATCCACCGT 59.958 38.462 0.00 0.00 0.00 4.83
5250 5897 1.373570 CTGAATCGGGAGGCTTTGTC 58.626 55.000 0.00 0.00 0.00 3.18
5261 5908 8.986477 ATTTCTTTGTTTAAATCCTGAATCGG 57.014 30.769 0.00 0.00 0.00 4.18
5396 6051 4.713553 TGATAGAAAAGTGTGACAAGGCA 58.286 39.130 0.00 0.00 0.00 4.75
5449 6106 2.795231 AAGTGTGGCATGCTATGACT 57.205 45.000 18.92 14.52 39.69 3.41
5491 6149 6.868622 AGTTGGTTAGCAACAGAGTCTATAG 58.131 40.000 25.76 0.00 35.18 1.31
5501 6159 2.497675 TGGCAAAAGTTGGTTAGCAACA 59.502 40.909 25.76 3.95 35.18 3.33
5518 6176 1.365633 GGCAAAATTGGTCGTGGCA 59.634 52.632 0.00 0.00 36.61 4.92
5597 6256 3.267597 ATTGAACAAGCGCCGGTGC 62.268 57.895 32.51 32.51 0.00 5.01
5616 6275 0.882927 ACAACCCAACATGTCCGACG 60.883 55.000 0.00 0.00 0.00 5.12
5646 6305 6.357240 GCAAGATAATATTTTTCGCCGACTTC 59.643 38.462 0.00 0.00 0.00 3.01
5698 6360 1.134699 CCTCTGCGCACTTCCAAGATA 60.135 52.381 5.66 0.00 0.00 1.98
5699 6361 0.392193 CCTCTGCGCACTTCCAAGAT 60.392 55.000 5.66 0.00 0.00 2.40
5700 6362 1.004560 CCTCTGCGCACTTCCAAGA 60.005 57.895 5.66 0.00 0.00 3.02
5701 6363 2.037136 CCCTCTGCGCACTTCCAAG 61.037 63.158 5.66 0.00 0.00 3.61
5702 6364 2.032528 CCCTCTGCGCACTTCCAA 59.967 61.111 5.66 0.00 0.00 3.53
5703 6365 2.922503 TCCCTCTGCGCACTTCCA 60.923 61.111 5.66 0.00 0.00 3.53
5704 6366 2.125350 CTCCCTCTGCGCACTTCC 60.125 66.667 5.66 0.00 0.00 3.46
5705 6367 1.446966 GACTCCCTCTGCGCACTTC 60.447 63.158 5.66 0.00 0.00 3.01
5706 6368 2.659610 GACTCCCTCTGCGCACTT 59.340 61.111 5.66 0.00 0.00 3.16
5707 6369 3.386237 GGACTCCCTCTGCGCACT 61.386 66.667 5.66 0.00 0.00 4.40
5709 6371 1.768684 AAAAGGACTCCCTCTGCGCA 61.769 55.000 10.98 10.98 43.48 6.09
5710 6372 1.003233 AAAAGGACTCCCTCTGCGC 60.003 57.895 0.00 0.00 43.48 6.09
5711 6373 0.321671 TCAAAAGGACTCCCTCTGCG 59.678 55.000 0.00 0.00 43.48 5.18
5712 6374 2.431454 CTTCAAAAGGACTCCCTCTGC 58.569 52.381 0.00 0.00 43.48 4.26
5715 6388 1.352687 AGGCTTCAAAAGGACTCCCTC 59.647 52.381 0.00 0.00 43.48 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.