Multiple sequence alignment - TraesCS2D01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G031200 chr2D 100.000 7629 0 0 1 7629 12572881 12580509 0.000000e+00 14089.0
1 TraesCS2D01G031200 chr2D 85.321 545 77 1 7085 7629 12558139 12557598 1.860000e-155 560.0
2 TraesCS2D01G031200 chr2D 84.571 525 81 0 7105 7629 12552198 12551674 8.770000e-144 521.0
3 TraesCS2D01G031200 chr2D 83.744 203 29 3 3785 3987 12576593 12576791 1.010000e-43 189.0
4 TraesCS2D01G031200 chr2D 83.744 203 29 3 3713 3911 12576665 12576867 1.010000e-43 189.0
5 TraesCS2D01G031200 chr2A 95.282 2077 75 18 3371 5440 13032195 13034255 0.000000e+00 3271.0
6 TraesCS2D01G031200 chr2A 93.423 1718 80 11 1659 3375 13030262 13031947 0.000000e+00 2516.0
7 TraesCS2D01G031200 chr2A 90.025 1193 104 8 5205 6387 13035857 13037044 0.000000e+00 1530.0
8 TraesCS2D01G031200 chr2A 86.802 1038 105 15 4189 5210 13034813 13035834 0.000000e+00 1129.0
9 TraesCS2D01G031200 chr2A 89.423 728 64 5 6908 7629 13037646 13038366 0.000000e+00 905.0
10 TraesCS2D01G031200 chr2A 85.830 741 38 30 801 1479 13029526 13030261 0.000000e+00 725.0
11 TraesCS2D01G031200 chr2A 85.321 545 80 0 7085 7629 13014783 13014239 1.440000e-156 564.0
12 TraesCS2D01G031200 chr2A 84.007 544 87 0 7086 7629 12991940 12991397 2.440000e-144 523.0
13 TraesCS2D01G031200 chr2A 88.725 408 46 0 3801 4208 13034250 13034657 4.110000e-137 499.0
14 TraesCS2D01G031200 chr2A 82.822 326 22 15 6384 6682 13037196 13037514 2.110000e-65 261.0
15 TraesCS2D01G031200 chr2A 84.236 203 28 3 3713 3911 13032609 13032811 2.170000e-45 195.0
16 TraesCS2D01G031200 chr2A 87.597 129 8 6 1 129 13028587 13028707 7.980000e-30 143.0
17 TraesCS2D01G031200 chr2A 83.688 141 7 3 3026 3161 536453 536582 1.340000e-22 119.0
18 TraesCS2D01G031200 chr2A 77.108 166 35 2 3729 3891 13034250 13034415 8.150000e-15 93.5
19 TraesCS2D01G031200 chr2B 92.321 1771 100 15 1942 3706 19066781 19068521 0.000000e+00 2484.0
20 TraesCS2D01G031200 chr2B 93.025 1620 92 13 2093 3708 18932851 18931249 0.000000e+00 2346.0
21 TraesCS2D01G031200 chr2B 87.500 1632 163 30 4379 5980 19069104 19070724 0.000000e+00 1845.0
22 TraesCS2D01G031200 chr2B 86.892 1007 76 24 4195 5185 18930608 18929642 0.000000e+00 1077.0
23 TraesCS2D01G031200 chr2B 88.889 882 73 10 6764 7629 19073221 19074093 0.000000e+00 1062.0
24 TraesCS2D01G031200 chr2B 89.299 785 71 8 5205 5980 18925442 18924662 0.000000e+00 972.0
25 TraesCS2D01G031200 chr2B 92.058 554 32 4 3785 4337 19068564 19069106 0.000000e+00 769.0
26 TraesCS2D01G031200 chr2B 89.340 591 63 0 7039 7629 18923756 18923166 0.000000e+00 743.0
27 TraesCS2D01G031200 chr2B 84.545 660 90 6 6968 7626 19076460 19077108 1.790000e-180 643.0
28 TraesCS2D01G031200 chr2B 88.153 498 45 7 3714 4208 18931207 18930721 1.430000e-161 580.0
29 TraesCS2D01G031200 chr2B 93.140 379 24 2 4616 4992 18925904 18925526 8.650000e-154 555.0
30 TraesCS2D01G031200 chr2B 89.731 409 41 1 3801 4208 18927659 18927251 8.770000e-144 521.0
31 TraesCS2D01G031200 chr2B 83.364 541 90 0 7086 7626 18953944 18954484 1.140000e-137 501.0
32 TraesCS2D01G031200 chr2B 86.811 417 38 6 4195 4602 18927090 18926682 4.200000e-122 449.0
33 TraesCS2D01G031200 chr2B 78.792 745 70 48 1014 1695 18933998 18933279 3.290000e-113 420.0
34 TraesCS2D01G031200 chr2B 91.030 301 18 5 1765 2062 18933278 18932984 1.540000e-106 398.0
35 TraesCS2D01G031200 chr2B 87.542 297 25 8 6688 6979 18924063 18923774 4.410000e-87 333.0
36 TraesCS2D01G031200 chr2B 83.088 272 11 14 1014 1254 19065647 19065914 1.670000e-51 215.0
37 TraesCS2D01G031200 chr2B 82.449 245 17 17 6384 6603 18924397 18924154 2.810000e-44 191.0
38 TraesCS2D01G031200 chr2B 96.078 102 4 0 5205 5306 18929586 18929485 4.740000e-37 167.0
39 TraesCS2D01G031200 chr2B 94.737 95 2 3 5339 5432 18929487 18929395 2.220000e-30 145.0
40 TraesCS2D01G031200 chr2B 78.462 195 35 6 3705 3894 19068556 19068748 3.740000e-23 121.0
41 TraesCS2D01G031200 chr2B 87.255 102 3 5 922 1013 19065518 19065619 2.910000e-19 108.0
42 TraesCS2D01G031200 chr2B 86.458 96 10 3 6510 6602 19072972 19073067 1.350000e-17 102.0
43 TraesCS2D01G031200 chr2B 75.377 199 40 7 3715 3911 18931134 18930943 3.790000e-13 87.9
44 TraesCS2D01G031200 chr2B 82.524 103 13 3 3031 3133 10774612 10774515 1.360000e-12 86.1
45 TraesCS2D01G031200 chr2B 91.525 59 5 0 16 74 18937929 18937871 1.760000e-11 82.4
46 TraesCS2D01G031200 chr2B 100.000 29 0 0 5014 5042 19069776 19069748 4.000000e-03 54.7
47 TraesCS2D01G031200 chr6B 94.170 789 40 4 2464 3247 49616011 49615224 0.000000e+00 1197.0
48 TraesCS2D01G031200 chr6B 96.875 32 1 0 3254 3285 49602075 49602044 4.000000e-03 54.7
49 TraesCS2D01G031200 chr5B 82.413 887 121 17 5513 6389 485907017 485906156 0.000000e+00 741.0
50 TraesCS2D01G031200 chr5B 87.273 55 7 0 6548 6602 485903189 485903135 6.390000e-06 63.9
51 TraesCS2D01G031200 chr5D 87.123 365 39 7 2891 3251 404498452 404498092 2.560000e-109 407.0
52 TraesCS2D01G031200 chr5D 77.011 348 71 8 3551 3893 404498093 404497750 2.810000e-44 191.0
53 TraesCS2D01G031200 chr5A 82.500 240 27 8 5857 6090 599799342 599799572 6.040000e-46 196.0
54 TraesCS2D01G031200 chr1D 82.178 101 13 5 3494 3594 493030209 493030114 1.760000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G031200 chr2D 12572881 12580509 7628 False 4822.333333 14089 89.162667 1 7629 3 chr2D.!!$F1 7628
1 TraesCS2D01G031200 chr2D 12557598 12558139 541 True 560.000000 560 85.321000 7085 7629 1 chr2D.!!$R2 544
2 TraesCS2D01G031200 chr2D 12551674 12552198 524 True 521.000000 521 84.571000 7105 7629 1 chr2D.!!$R1 524
3 TraesCS2D01G031200 chr2A 13028587 13038366 9779 False 1024.318182 3271 87.388455 1 7629 11 chr2A.!!$F2 7628
4 TraesCS2D01G031200 chr2A 13014239 13014783 544 True 564.000000 564 85.321000 7085 7629 1 chr2A.!!$R2 544
5 TraesCS2D01G031200 chr2A 12991397 12991940 543 True 523.000000 523 84.007000 7086 7629 1 chr2A.!!$R1 543
6 TraesCS2D01G031200 chr2B 19065518 19077108 11590 False 816.555556 2484 86.730667 922 7629 9 chr2B.!!$F2 6707
7 TraesCS2D01G031200 chr2B 18923166 18937929 14763 True 566.706250 2346 88.370063 16 7629 16 chr2B.!!$R3 7613
8 TraesCS2D01G031200 chr2B 18953944 18954484 540 False 501.000000 501 83.364000 7086 7626 1 chr2B.!!$F1 540
9 TraesCS2D01G031200 chr6B 49615224 49616011 787 True 1197.000000 1197 94.170000 2464 3247 1 chr6B.!!$R2 783
10 TraesCS2D01G031200 chr5B 485903135 485907017 3882 True 402.450000 741 84.843000 5513 6602 2 chr5B.!!$R1 1089
11 TraesCS2D01G031200 chr5D 404497750 404498452 702 True 299.000000 407 82.067000 2891 3893 2 chr5D.!!$R1 1002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 3483 0.035317 TGCATCCCCATAGCGATGAC 59.965 55.0 8.55 0.00 38.53 3.06 F
1386 4863 0.034059 AGTTCCTCAACGCCACTGAG 59.966 55.0 0.00 0.00 40.08 3.35 F
2204 5842 0.233332 GTTCAGCTTCTCGTGCACAC 59.767 55.0 18.64 0.00 0.00 3.82 F
2403 6041 0.040058 TCTGGGCATGCAAACTGGAT 59.960 50.0 21.36 0.00 0.00 3.41 F
4216 8281 0.179020 TGGTGTGGCCACAGAGAAAG 60.179 55.0 38.55 0.00 43.61 2.62 F
5333 9461 0.250727 TGGCAGTAAAGGGTGCACTC 60.251 55.0 17.98 14.03 41.75 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 5895 0.790993 TGTAGGAGAGGGGTTCCAGT 59.209 55.0 0.00 0.0 37.18 4.00 R
2403 6041 0.958091 AGCATAAAAGCACACGCCAA 59.042 45.0 0.00 0.0 39.83 4.52 R
3594 7496 1.108776 CATTGGCATTACAGCAGGCT 58.891 50.0 0.00 0.0 35.83 4.58 R
4321 8386 2.501723 TGTTCTCTGATGCCCCTTCTAC 59.498 50.0 0.00 0.0 0.00 2.59 R
5607 14085 0.178921 TCCTTCCTCAGGTCAGCTGT 60.179 55.0 14.67 0.0 44.37 4.40 R
6903 19954 0.109226 GCCGTGCGAGAAGTTAGACT 60.109 55.0 0.00 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 1026 8.635983 GTGTTCGTAAATTTTAGAGCATTTTCC 58.364 33.333 12.55 1.04 0.00 3.13
132 1590 5.431420 AAATTTTGGTGCCGGAAATTTTC 57.569 34.783 5.05 0.24 38.91 2.29
133 1591 2.535012 TTTGGTGCCGGAAATTTTCC 57.465 45.000 16.80 16.80 46.62 3.13
147 1605 6.095377 GGAAATTTTCCTGCTGTAACAGATG 58.905 40.000 19.01 0.00 46.57 2.90
148 1606 6.071952 GGAAATTTTCCTGCTGTAACAGATGA 60.072 38.462 19.01 0.00 46.57 2.92
160 1648 4.634004 TGTAACAGATGATGTAAAAGCCGG 59.366 41.667 0.00 0.00 43.00 6.13
162 1650 3.009723 ACAGATGATGTAAAAGCCGGTG 58.990 45.455 1.90 0.00 41.60 4.94
163 1651 2.017049 AGATGATGTAAAAGCCGGTGC 58.983 47.619 1.90 0.00 37.95 5.01
166 1654 1.302993 ATGTAAAAGCCGGTGCCGT 60.303 52.632 1.90 0.00 38.69 5.68
167 1655 1.582610 ATGTAAAAGCCGGTGCCGTG 61.583 55.000 1.90 2.65 38.69 4.94
168 1656 3.358707 TAAAAGCCGGTGCCGTGC 61.359 61.111 1.90 11.99 38.69 5.34
175 1663 4.954680 CGGTGCCGTGCAAACGTG 62.955 66.667 1.93 0.00 41.47 4.49
179 1667 4.264638 GCCGTGCAAACGTGGCTT 62.265 61.111 12.90 0.00 44.16 4.35
181 1669 2.542907 CCGTGCAAACGTGGCTTCT 61.543 57.895 12.90 0.00 0.00 2.85
183 1671 0.657368 CGTGCAAACGTGGCTTCTTC 60.657 55.000 12.90 0.27 0.00 2.87
184 1672 0.380378 GTGCAAACGTGGCTTCTTCA 59.620 50.000 12.90 0.00 0.00 3.02
185 1673 1.098869 TGCAAACGTGGCTTCTTCAA 58.901 45.000 12.90 0.00 0.00 2.69
186 1674 1.202245 TGCAAACGTGGCTTCTTCAAC 60.202 47.619 12.90 0.00 0.00 3.18
189 1677 3.058224 GCAAACGTGGCTTCTTCAACTAT 60.058 43.478 5.30 0.00 0.00 2.12
190 1678 4.712763 CAAACGTGGCTTCTTCAACTATC 58.287 43.478 0.00 0.00 0.00 2.08
191 1679 3.678056 ACGTGGCTTCTTCAACTATCA 57.322 42.857 0.00 0.00 0.00 2.15
192 1680 4.002906 ACGTGGCTTCTTCAACTATCAA 57.997 40.909 0.00 0.00 0.00 2.57
193 1681 4.385825 ACGTGGCTTCTTCAACTATCAAA 58.614 39.130 0.00 0.00 0.00 2.69
195 1683 5.298276 ACGTGGCTTCTTCAACTATCAAAAA 59.702 36.000 0.00 0.00 0.00 1.94
196 1684 5.625311 CGTGGCTTCTTCAACTATCAAAAAC 59.375 40.000 0.00 0.00 0.00 2.43
200 1688 8.855110 TGGCTTCTTCAACTATCAAAAACATTA 58.145 29.630 0.00 0.00 0.00 1.90
215 1703 8.669243 TCAAAAACATTAAAACATGTTCAACCC 58.331 29.630 12.39 0.00 44.95 4.11
217 1705 7.784633 AAACATTAAAACATGTTCAACCCAG 57.215 32.000 12.39 2.08 44.95 4.45
218 1706 6.723298 ACATTAAAACATGTTCAACCCAGA 57.277 33.333 12.39 0.00 33.29 3.86
220 1708 8.415950 ACATTAAAACATGTTCAACCCAGATA 57.584 30.769 12.39 0.00 33.29 1.98
232 1720 9.967451 TGTTCAACCCAGATAATAATAAACTCA 57.033 29.630 0.00 0.00 0.00 3.41
258 1746 7.959689 ATCAAATTAATCTGATCAGACGAGG 57.040 36.000 27.37 13.03 40.75 4.63
259 1747 6.283694 TCAAATTAATCTGATCAGACGAGGG 58.716 40.000 27.37 13.50 40.75 4.30
260 1748 6.098266 TCAAATTAATCTGATCAGACGAGGGA 59.902 38.462 27.37 15.39 40.75 4.20
262 1750 2.746279 ATCTGATCAGACGAGGGAGT 57.254 50.000 27.37 6.47 40.75 3.85
263 1751 1.756430 TCTGATCAGACGAGGGAGTG 58.244 55.000 21.67 0.00 31.41 3.51
264 1752 1.282157 TCTGATCAGACGAGGGAGTGA 59.718 52.381 21.67 0.00 31.41 3.41
265 1753 1.403679 CTGATCAGACGAGGGAGTGAC 59.596 57.143 18.34 0.00 0.00 3.67
266 1754 0.378962 GATCAGACGAGGGAGTGACG 59.621 60.000 0.00 0.00 0.00 4.35
267 1755 1.032657 ATCAGACGAGGGAGTGACGG 61.033 60.000 0.00 0.00 0.00 4.79
269 1757 0.675837 CAGACGAGGGAGTGACGGTA 60.676 60.000 0.00 0.00 0.00 4.02
270 1758 0.255318 AGACGAGGGAGTGACGGTAT 59.745 55.000 0.00 0.00 0.00 2.73
271 1759 0.381089 GACGAGGGAGTGACGGTATG 59.619 60.000 0.00 0.00 0.00 2.39
272 1760 1.035932 ACGAGGGAGTGACGGTATGG 61.036 60.000 0.00 0.00 0.00 2.74
273 1761 1.735376 CGAGGGAGTGACGGTATGGG 61.735 65.000 0.00 0.00 0.00 4.00
275 1763 0.686769 AGGGAGTGACGGTATGGGTC 60.687 60.000 0.00 0.00 34.99 4.46
277 1765 1.410648 GGGAGTGACGGTATGGGTCTA 60.411 57.143 0.00 0.00 35.45 2.59
278 1766 1.955080 GGAGTGACGGTATGGGTCTAG 59.045 57.143 0.00 0.00 35.45 2.43
279 1767 1.337387 GAGTGACGGTATGGGTCTAGC 59.663 57.143 0.00 0.00 35.45 3.42
280 1768 1.108776 GTGACGGTATGGGTCTAGCA 58.891 55.000 0.00 0.00 35.45 3.49
281 1769 1.108776 TGACGGTATGGGTCTAGCAC 58.891 55.000 0.00 0.00 35.45 4.40
282 1770 0.388294 GACGGTATGGGTCTAGCACC 59.612 60.000 3.50 3.50 45.97 5.01
292 1780 2.736347 GGTCTAGCACCCTAGTCTTGA 58.264 52.381 0.00 0.00 41.49 3.02
294 1782 4.471548 GGTCTAGCACCCTAGTCTTGATA 58.528 47.826 0.00 0.00 41.49 2.15
295 1783 4.521256 GGTCTAGCACCCTAGTCTTGATAG 59.479 50.000 0.00 2.77 41.49 2.08
297 1785 6.007703 GTCTAGCACCCTAGTCTTGATAGAT 58.992 44.000 11.45 0.00 39.66 1.98
298 1786 6.492087 GTCTAGCACCCTAGTCTTGATAGATT 59.508 42.308 11.45 0.00 39.66 2.40
299 1787 7.014808 GTCTAGCACCCTAGTCTTGATAGATTT 59.985 40.741 11.45 0.00 39.66 2.17
343 2996 3.900971 TGGCACATGAACATGATATGGT 58.099 40.909 19.56 0.00 41.20 3.55
345 2998 3.254166 GGCACATGAACATGATATGGTCC 59.746 47.826 19.56 3.30 46.39 4.46
346 2999 3.058708 GCACATGAACATGATATGGTCCG 60.059 47.826 19.56 0.00 46.39 4.79
353 3006 6.014012 TGAACATGATATGGTCCGTATCCTA 58.986 40.000 23.07 10.17 46.39 2.94
354 3007 5.916661 ACATGATATGGTCCGTATCCTAC 57.083 43.478 23.07 4.98 32.96 3.18
355 3008 4.710375 ACATGATATGGTCCGTATCCTACC 59.290 45.833 23.07 4.66 32.96 3.18
357 3010 2.610438 TATGGTCCGTATCCTACCCC 57.390 55.000 0.00 0.00 31.97 4.95
358 3011 0.865362 ATGGTCCGTATCCTACCCCT 59.135 55.000 0.00 0.00 31.97 4.79
359 3012 0.186873 TGGTCCGTATCCTACCCCTC 59.813 60.000 0.00 0.00 31.97 4.30
365 3018 1.692519 CGTATCCTACCCCTCCCTTTG 59.307 57.143 0.00 0.00 0.00 2.77
367 3020 2.378308 ATCCTACCCCTCCCTTTGTT 57.622 50.000 0.00 0.00 0.00 2.83
370 3023 1.670059 CTACCCCTCCCTTTGTTCCT 58.330 55.000 0.00 0.00 0.00 3.36
386 3039 4.081406 TGTTCCTTGTGAAATCCATCCTG 58.919 43.478 0.00 0.00 33.94 3.86
396 3360 2.787473 ATCCATCCTGAAAAGCACGA 57.213 45.000 0.00 0.00 0.00 4.35
441 3405 2.134287 GCGATGGAGAGGGTAGGCA 61.134 63.158 0.00 0.00 0.00 4.75
442 3406 1.476007 GCGATGGAGAGGGTAGGCAT 61.476 60.000 0.00 0.00 0.00 4.40
443 3407 0.319728 CGATGGAGAGGGTAGGCATG 59.680 60.000 0.00 0.00 0.00 4.06
444 3408 0.689623 GATGGAGAGGGTAGGCATGG 59.310 60.000 0.00 0.00 0.00 3.66
446 3410 0.253160 TGGAGAGGGTAGGCATGGTT 60.253 55.000 0.00 0.00 0.00 3.67
448 3412 1.408822 GGAGAGGGTAGGCATGGTTTG 60.409 57.143 0.00 0.00 0.00 2.93
451 3415 1.215423 GAGGGTAGGCATGGTTTGGAT 59.785 52.381 0.00 0.00 0.00 3.41
455 3421 1.064017 GTAGGCATGGTTTGGATCCCA 60.064 52.381 9.90 0.00 34.66 4.37
456 3422 0.324645 AGGCATGGTTTGGATCCCAC 60.325 55.000 9.90 5.93 32.49 4.61
486 3452 2.885894 GACTGATAAGGACGAGGGTAGG 59.114 54.545 0.00 0.00 0.00 3.18
493 3463 1.139095 GACGAGGGTAGGCGACTTG 59.861 63.158 0.00 0.00 43.67 3.16
510 3480 0.473755 TTGTGCATCCCCATAGCGAT 59.526 50.000 0.00 0.00 0.00 4.58
511 3481 0.250424 TGTGCATCCCCATAGCGATG 60.250 55.000 0.00 0.00 39.13 3.84
513 3483 0.035317 TGCATCCCCATAGCGATGAC 59.965 55.000 8.55 0.00 38.53 3.06
574 3556 3.244561 CCAACTCAGTCAGGTACCACAAT 60.245 47.826 15.94 0.00 0.00 2.71
581 3563 3.009805 AGTCAGGTACCACAATAAACCCC 59.990 47.826 15.94 0.00 32.10 4.95
582 3564 3.009805 GTCAGGTACCACAATAAACCCCT 59.990 47.826 15.94 0.00 32.10 4.79
586 3568 3.441222 GGTACCACAATAAACCCCTTTCG 59.559 47.826 7.15 0.00 0.00 3.46
595 3577 2.366435 CCCCTTTCGCCCTCCCTA 60.366 66.667 0.00 0.00 0.00 3.53
612 3599 4.965814 TCCCTATAGCTGCTCAATTTCAG 58.034 43.478 4.91 0.00 0.00 3.02
629 3616 1.423921 TCAGAAGGGGGTTTTGTCTCC 59.576 52.381 0.00 0.00 0.00 3.71
636 3623 3.089284 GGGGGTTTTGTCTCCACAATAG 58.911 50.000 0.00 0.00 42.28 1.73
665 3652 6.520272 TGTGTTTCACAAGGATAAAAATGGG 58.480 36.000 0.00 0.00 41.69 4.00
669 3656 7.713073 TGTTTCACAAGGATAAAAATGGGTTTC 59.287 33.333 0.00 0.00 0.00 2.78
670 3657 6.985653 TCACAAGGATAAAAATGGGTTTCA 57.014 33.333 0.00 0.00 0.00 2.69
673 3660 7.288852 TCACAAGGATAAAAATGGGTTTCAGAA 59.711 33.333 0.00 0.00 0.00 3.02
681 3668 7.624360 AAAAATGGGTTTCAGAAAGGAAAAC 57.376 32.000 0.00 0.00 42.42 2.43
688 3675 7.093289 TGGGTTTCAGAAAGGAAAACACATTTA 60.093 33.333 6.10 0.00 44.41 1.40
692 3679 7.272037 TCAGAAAGGAAAACACATTTACCTC 57.728 36.000 0.00 0.00 31.61 3.85
693 3680 7.060421 TCAGAAAGGAAAACACATTTACCTCT 58.940 34.615 0.00 0.00 31.61 3.69
694 3681 7.013274 TCAGAAAGGAAAACACATTTACCTCTG 59.987 37.037 0.00 0.00 40.49 3.35
695 3682 5.453567 AAGGAAAACACATTTACCTCTGC 57.546 39.130 0.00 0.00 31.61 4.26
696 3683 4.469657 AGGAAAACACATTTACCTCTGCA 58.530 39.130 0.00 0.00 31.61 4.41
697 3684 4.892934 AGGAAAACACATTTACCTCTGCAA 59.107 37.500 0.00 0.00 31.61 4.08
698 3685 4.982295 GGAAAACACATTTACCTCTGCAAC 59.018 41.667 0.00 0.00 0.00 4.17
700 3687 2.151202 ACACATTTACCTCTGCAACGG 58.849 47.619 0.00 0.00 0.00 4.44
701 3688 2.224426 ACACATTTACCTCTGCAACGGA 60.224 45.455 7.86 0.00 0.00 4.69
702 3689 2.416547 CACATTTACCTCTGCAACGGAG 59.583 50.000 7.86 1.36 36.69 4.63
746 3733 6.395426 AGAATGTTTCTGAGTGATTGCAAA 57.605 33.333 1.71 0.00 38.91 3.68
804 3791 9.676861 AACCAAAGACCCTTATTATTACTACAC 57.323 33.333 0.00 0.00 0.00 2.90
805 3792 9.054580 ACCAAAGACCCTTATTATTACTACACT 57.945 33.333 0.00 0.00 0.00 3.55
806 3793 9.543783 CCAAAGACCCTTATTATTACTACACTC 57.456 37.037 0.00 0.00 0.00 3.51
874 3979 1.021390 GTGGCTCCATCCAACAGTCG 61.021 60.000 0.00 0.00 37.96 4.18
921 4070 5.947663 TCTCTCCCTGTGGTTCAAATTTTA 58.052 37.500 0.00 0.00 0.00 1.52
998 4175 2.370633 GGGAAGGGAGGAGGAGCT 59.629 66.667 0.00 0.00 0.00 4.09
1041 4245 3.476419 CCGCCCCGGTAAGACCAT 61.476 66.667 0.00 0.00 42.73 3.55
1043 4247 2.432300 CGCCCCGGTAAGACCATCT 61.432 63.158 0.00 0.00 38.47 2.90
1048 4252 1.408453 CCGGTAAGACCATCTCCCCC 61.408 65.000 0.00 0.00 38.47 5.40
1049 4253 0.398664 CGGTAAGACCATCTCCCCCT 60.399 60.000 0.00 0.00 38.47 4.79
1051 4255 1.425694 GTAAGACCATCTCCCCCTCC 58.574 60.000 0.00 0.00 0.00 4.30
1052 4256 0.105658 TAAGACCATCTCCCCCTCCG 60.106 60.000 0.00 0.00 0.00 4.63
1054 4258 2.041819 ACCATCTCCCCCTCCGTC 60.042 66.667 0.00 0.00 0.00 4.79
1122 4329 1.218316 GATTTCGGACCAGGAGCGT 59.782 57.895 0.00 0.00 0.00 5.07
1163 4376 4.421479 CTGCTTCCTCCGCGTCGT 62.421 66.667 4.92 0.00 0.00 4.34
1336 4812 0.663568 CACTGAACTCGTCCGTGGAC 60.664 60.000 9.04 9.04 37.70 4.02
1386 4863 0.034059 AGTTCCTCAACGCCACTGAG 59.966 55.000 0.00 0.00 40.08 3.35
1479 4975 3.000727 AGTTCGATTCCACAAACCGATC 58.999 45.455 0.00 0.00 0.00 3.69
1485 4981 1.732941 TCCACAAACCGATCGATTGG 58.267 50.000 27.31 27.31 37.36 3.16
1508 5004 5.393461 GGTTGATTGGTTATCTGCTTGGAAG 60.393 44.000 0.00 0.00 34.17 3.46
1547 5044 7.379098 TCGTGCAACCTATCTATCTAGTATG 57.621 40.000 0.00 0.00 0.00 2.39
1571 5068 1.028330 TGCTGCTGCAGAATAGCACC 61.028 55.000 32.30 12.67 45.52 5.01
1572 5069 1.028330 GCTGCTGCAGAATAGCACCA 61.028 55.000 32.30 1.68 45.52 4.17
1575 5080 1.541147 TGCTGCAGAATAGCACCAAAC 59.459 47.619 20.43 0.00 45.52 2.93
1600 5105 1.912043 ACTGGTTCAGGATCCAAGAGG 59.088 52.381 15.82 5.94 35.51 3.69
1612 5117 2.054799 TCCAAGAGGTTACCTGCTTGT 58.945 47.619 26.28 1.58 37.22 3.16
1619 5124 2.092323 GGTTACCTGCTTGTCCAATCC 58.908 52.381 0.00 0.00 0.00 3.01
1625 5130 2.686915 CCTGCTTGTCCAATCCTCATTC 59.313 50.000 0.00 0.00 0.00 2.67
1639 5144 1.057636 TCATTCTGCGAACGAACGAC 58.942 50.000 9.67 2.97 35.09 4.34
1657 5163 2.667137 GACCAGTCGAGTGTTCTTCTG 58.333 52.381 18.64 4.09 0.00 3.02
1673 5179 2.598099 TGTGGCTGTGGTGGCATG 60.598 61.111 0.00 0.00 44.18 4.06
1742 5248 5.408356 ACGTATGATGTTCAGTGTCTTACC 58.592 41.667 0.00 0.00 0.00 2.85
1777 5283 2.672996 GCCTTGCTTCTGCCGGAA 60.673 61.111 5.05 0.00 38.71 4.30
1793 5302 5.242434 TGCCGGAATGACACCATATATTAC 58.758 41.667 5.05 0.00 31.59 1.89
1828 5337 3.723260 TGTATGCAACTTCTGTTCGTCA 58.277 40.909 0.00 0.00 33.52 4.35
1843 5352 5.237815 TGTTCGTCATGAATAACTTCTGCT 58.762 37.500 17.63 0.00 39.21 4.24
1890 5399 3.821033 ACTTCAGGTTGTGGTATTTCTGC 59.179 43.478 0.00 0.00 0.00 4.26
1929 5438 2.443255 ACTGAAACATGAGGTCTGGGTT 59.557 45.455 0.00 0.00 0.00 4.11
1984 5493 2.912956 TGCTGGACTGACCTCCTTATTT 59.087 45.455 0.00 0.00 39.86 1.40
2031 5540 5.468746 TCTTGCTGCTAAACGTTTCACTAAT 59.531 36.000 18.42 0.00 0.00 1.73
2036 5545 6.160664 TGCTAAACGTTTCACTAATAGCAC 57.839 37.500 22.06 3.02 39.29 4.40
2037 5546 5.121142 TGCTAAACGTTTCACTAATAGCACC 59.879 40.000 22.06 2.46 39.29 5.01
2038 5547 5.350640 GCTAAACGTTTCACTAATAGCACCT 59.649 40.000 18.42 0.00 35.53 4.00
2039 5548 5.607119 AAACGTTTCACTAATAGCACCTG 57.393 39.130 7.96 0.00 0.00 4.00
2040 5549 4.267349 ACGTTTCACTAATAGCACCTGT 57.733 40.909 0.00 0.00 0.00 4.00
2041 5550 3.994392 ACGTTTCACTAATAGCACCTGTG 59.006 43.478 0.00 0.00 0.00 3.66
2062 5585 5.106118 TGTGCTTCTACTCACAGCTTACTAG 60.106 44.000 0.00 0.00 38.18 2.57
2100 5738 1.547372 CTCTTGTGCCTTCCCCAATTG 59.453 52.381 0.00 0.00 0.00 2.32
2108 5746 1.075374 CCTTCCCCAATTGTGACCTCA 59.925 52.381 4.43 0.00 0.00 3.86
2113 5751 3.577848 TCCCCAATTGTGACCTCAATTTG 59.422 43.478 4.43 5.05 42.88 2.32
2192 5830 1.005215 CCATTTCCTCCCAGTTCAGCT 59.995 52.381 0.00 0.00 0.00 4.24
2204 5842 0.233332 GTTCAGCTTCTCGTGCACAC 59.767 55.000 18.64 0.00 0.00 3.82
2235 5873 2.434884 AGCAGCAACCGGTGATCG 60.435 61.111 8.52 0.00 43.56 3.69
2400 6038 0.675083 TTGTCTGGGCATGCAAACTG 59.325 50.000 21.36 12.67 0.00 3.16
2403 6041 0.040058 TCTGGGCATGCAAACTGGAT 59.960 50.000 21.36 0.00 0.00 3.41
2421 6059 1.919918 GATTGGCGTGTGCTTTTATGC 59.080 47.619 0.00 0.00 42.25 3.14
2441 6080 2.482839 GCTAGAAAGAGCATCGGAAGCT 60.483 50.000 7.55 7.55 46.82 3.74
2559 6198 2.180131 CTGAGCGCAGGTTTCAGCAC 62.180 60.000 11.47 0.00 39.88 4.40
2623 6262 5.350365 TCGGTACAAACTGATGTTATTCAGC 59.650 40.000 0.00 0.00 45.75 4.26
2711 6350 1.171308 GGAATTGCAGCAGCTTCTGA 58.829 50.000 18.08 0.00 42.74 3.27
2777 6420 7.359014 CGACAACTGATGCATCATATAAGTGAG 60.359 40.741 28.81 19.05 36.02 3.51
2807 6450 1.072173 TCTGTTATGTGCAGCTGGTGT 59.928 47.619 17.12 0.00 34.21 4.16
2907 6550 6.586344 TCCTACCATTTCATTGTTTGCAAAA 58.414 32.000 14.67 0.00 38.21 2.44
3000 6643 1.103398 AGCAGCACGAAAAGCAACCT 61.103 50.000 0.00 0.00 0.00 3.50
3001 6644 0.936297 GCAGCACGAAAAGCAACCTG 60.936 55.000 0.00 0.00 0.00 4.00
3487 7389 6.655078 ATTAAGTGGCATGTCACTCTTTTT 57.345 33.333 31.81 18.80 46.17 1.94
3488 7390 4.574599 AAGTGGCATGTCACTCTTTTTC 57.425 40.909 31.81 2.57 46.17 2.29
3489 7391 3.554934 AGTGGCATGTCACTCTTTTTCA 58.445 40.909 27.04 0.00 43.82 2.69
3507 7409 6.476243 TTTTCATACTGAAGAAACCTACGC 57.524 37.500 0.00 0.00 37.70 4.42
3514 7416 2.100252 TGAAGAAACCTACGCGGATAGG 59.900 50.000 18.46 18.46 46.41 2.57
4216 8281 0.179020 TGGTGTGGCCACAGAGAAAG 60.179 55.000 38.55 0.00 43.61 2.62
4321 8386 4.555348 TTAACCTAGGTGTTTTTGCACG 57.445 40.909 17.14 0.00 40.08 5.34
4339 8404 1.342076 ACGTAGAAGGGGCATCAGAGA 60.342 52.381 0.00 0.00 0.00 3.10
4633 8712 5.010617 ACACTCTCTCTTTCTTCAGGAAGAC 59.989 44.000 11.09 0.00 46.13 3.01
4709 8788 6.060028 TGTCTTCACTGTTTTGCTCATTAC 57.940 37.500 0.00 0.00 0.00 1.89
4769 8848 0.259647 TAATGCCAGCCTTCCTGCAT 59.740 50.000 0.00 0.00 40.36 3.96
4793 8872 2.101917 TCCACTTATACTACAAGGGCGC 59.898 50.000 0.00 0.00 0.00 6.53
4997 9085 3.746492 ACCTCGAGCAAACTAATGTTGTC 59.254 43.478 6.99 0.00 36.39 3.18
5105 9196 2.819608 TCTGGAAAAAGCATACCACTGC 59.180 45.455 0.00 0.00 42.62 4.40
5159 9250 3.513680 ACGCATACCATTGAGTTACGA 57.486 42.857 0.00 0.00 0.00 3.43
5188 9288 9.736023 CTGAAAAAGCATACCTATGAATTTACC 57.264 33.333 0.00 0.00 35.75 2.85
5215 9343 1.082690 GCTTGAAGCTGCAGTAGACC 58.917 55.000 16.64 0.00 38.45 3.85
5285 9413 5.111293 ACTTGTGTTTGAAAATGCAGGAAG 58.889 37.500 0.00 0.00 0.00 3.46
5325 9453 5.991606 TCGATTCAGATAATGGCAGTAAAGG 59.008 40.000 0.00 0.00 0.00 3.11
5333 9461 0.250727 TGGCAGTAAAGGGTGCACTC 60.251 55.000 17.98 14.03 41.75 3.51
5418 13888 3.069016 TGTCGTTTCTAGTTTCCTGCTCA 59.931 43.478 0.00 0.00 0.00 4.26
5452 13922 4.762289 AGACCCTGACTGGTAATCATTC 57.238 45.455 0.00 0.00 39.24 2.67
5476 13948 2.937519 ACAGAGAGATAGTCATCGGCA 58.062 47.619 0.00 0.00 36.20 5.69
5482 13954 4.799678 AGAGATAGTCATCGGCAATTACG 58.200 43.478 0.00 0.00 36.20 3.18
5492 13964 1.544686 GGCAATTACGATTTGCCACG 58.455 50.000 25.11 0.00 38.36 4.94
5509 13981 3.242248 GCCACGTACTAGTTTCTATTGCG 59.758 47.826 0.00 0.00 0.00 4.85
5543 14015 8.744568 TTTTATTGCCAAAGAACCAAGAAATT 57.255 26.923 0.00 0.00 32.08 1.82
5545 14017 3.976169 TGCCAAAGAACCAAGAAATTCG 58.024 40.909 0.00 0.00 0.00 3.34
5548 14020 3.983344 CCAAAGAACCAAGAAATTCGCAG 59.017 43.478 0.00 0.00 0.00 5.18
5549 14021 2.997485 AGAACCAAGAAATTCGCAGC 57.003 45.000 0.00 0.00 0.00 5.25
5550 14022 2.229792 AGAACCAAGAAATTCGCAGCA 58.770 42.857 0.00 0.00 0.00 4.41
5552 14024 1.896220 ACCAAGAAATTCGCAGCAGA 58.104 45.000 0.00 0.00 0.00 4.26
5582 14060 6.476706 AGTTTCAAAGGAAAAGAAGCAAATCG 59.523 34.615 0.00 0.00 44.18 3.34
5607 14085 7.416326 CGCACCCTCTGTTATGTATATATGCTA 60.416 40.741 2.37 0.00 0.00 3.49
5727 14205 2.674380 CCACCTTGCTGCCAGGAC 60.674 66.667 24.94 0.00 0.00 3.85
5778 14256 1.270826 CAGAAGCACAGAAGGACGAGA 59.729 52.381 0.00 0.00 0.00 4.04
5787 14265 2.034685 CAGAAGGACGAGACTGTTCACA 59.965 50.000 0.00 0.00 0.00 3.58
6005 14499 9.836864 ACATTACACATGTACATCATAGATGTT 57.163 29.630 16.75 1.52 34.67 2.71
6043 14538 6.992123 GTCCCTTTTTCTTTCAACCATTTCAT 59.008 34.615 0.00 0.00 0.00 2.57
6071 14566 2.279502 TACGCGAGGTCCACATGAGC 62.280 60.000 15.93 0.00 41.93 4.26
6101 14596 5.183904 ACTGAAGAATTGCAAATGAGGTACC 59.816 40.000 1.71 2.73 0.00 3.34
6103 14598 5.716228 TGAAGAATTGCAAATGAGGTACCAT 59.284 36.000 15.94 0.00 0.00 3.55
6144 14640 5.185454 TGGTAGGCAGTGATTTATTCTGTG 58.815 41.667 0.00 0.00 0.00 3.66
6149 14645 4.409570 GCAGTGATTTATTCTGTGTGCAG 58.590 43.478 0.00 0.00 43.87 4.41
6156 14652 8.543774 GTGATTTATTCTGTGTGCAGTCTATAC 58.456 37.037 0.00 0.00 43.05 1.47
6174 14670 8.334734 AGTCTATACTTCCAAGTTAGTCCACTA 58.665 37.037 0.00 0.00 40.37 2.74
6210 14706 3.584406 TGCCTCAGATTTCTTCCTCAGAA 59.416 43.478 0.00 0.00 39.99 3.02
6212 14708 4.323409 GCCTCAGATTTCTTCCTCAGAACT 60.323 45.833 0.00 0.00 41.56 3.01
6216 14712 5.545723 TCAGATTTCTTCCTCAGAACTTCCT 59.454 40.000 0.00 0.00 41.56 3.36
6274 14770 5.473162 TCGGATGAACATTCTGAAACAACAT 59.527 36.000 0.00 0.00 0.00 2.71
6282 14780 6.050432 ACATTCTGAAACAACATGTGCATTT 58.950 32.000 0.00 0.06 0.00 2.32
6285 14783 5.417811 TCTGAAACAACATGTGCATTTGTT 58.582 33.333 0.00 2.72 43.61 2.83
6306 14804 7.925703 TGTTAGTTACTCTTCTGAAACTTCG 57.074 36.000 0.00 0.00 34.23 3.79
6350 14848 4.402155 TGGATAATTTTCACACAGATGGGC 59.598 41.667 0.00 0.00 0.00 5.36
6381 14879 2.725221 ACCATGATGAGCTTCCCTTC 57.275 50.000 0.00 0.00 0.00 3.46
6475 16945 8.866970 ACTTTACGGATAAAAATTTGGACCTA 57.133 30.769 0.00 0.00 29.82 3.08
6479 16949 7.329588 ACGGATAAAAATTTGGACCTATGTC 57.670 36.000 0.00 0.00 40.98 3.06
6534 19289 1.407618 CGACCACCGATAATCAGACCA 59.592 52.381 0.00 0.00 41.76 4.02
6538 19293 2.205074 CACCGATAATCAGACCAGCAC 58.795 52.381 0.00 0.00 0.00 4.40
6636 19634 2.048601 CTGGCTCCCATGAGAAGAGAT 58.951 52.381 0.00 0.00 41.42 2.75
6645 19643 4.386088 CCCATGAGAAGAGATTTGTGGGAT 60.386 45.833 0.85 0.00 46.26 3.85
6649 19647 4.195416 GAGAAGAGATTTGTGGGATGACC 58.805 47.826 0.00 0.00 40.81 4.02
6669 19667 5.196695 GACCAGAATAGAATCTGCCCTTTT 58.803 41.667 0.00 0.00 44.43 2.27
6682 19695 2.280628 GCCCTTTTGGTGAGATCGTAG 58.719 52.381 0.00 0.00 38.10 3.51
6683 19696 2.906354 CCCTTTTGGTGAGATCGTAGG 58.094 52.381 0.00 0.00 38.10 3.18
6684 19697 2.500098 CCCTTTTGGTGAGATCGTAGGA 59.500 50.000 0.00 0.00 38.10 2.94
6685 19698 3.134804 CCCTTTTGGTGAGATCGTAGGAT 59.865 47.826 0.00 0.00 38.10 3.24
6695 19731 9.706691 TGGTGAGATCGTAGGATAAAATAAATC 57.293 33.333 0.00 0.00 31.51 2.17
6737 19774 5.653769 TCTGAAAAATTCTGCCCCTAGAATG 59.346 40.000 0.00 0.00 44.43 2.67
6769 19806 3.782656 TTCCTGAAAGAAGGTACACCC 57.217 47.619 0.00 0.00 38.58 4.61
6770 19807 1.621814 TCCTGAAAGAAGGTACACCCG 59.378 52.381 0.00 0.00 38.58 5.28
6775 19812 0.036306 AAGAAGGTACACCCGCCTTG 59.964 55.000 0.11 0.00 44.37 3.61
6776 19813 2.033602 AAGGTACACCCGCCTTGC 59.966 61.111 0.00 0.00 42.90 4.01
6795 19832 1.957177 GCCTCTCCATCGACTGATACA 59.043 52.381 0.00 0.00 32.18 2.29
6796 19833 2.287909 GCCTCTCCATCGACTGATACAC 60.288 54.545 0.00 0.00 32.18 2.90
6797 19834 2.031595 CCTCTCCATCGACTGATACACG 60.032 54.545 0.00 0.00 32.18 4.49
6821 19858 9.826574 ACGTAGCCATATTCTTTTCAAAGTATA 57.173 29.630 0.00 0.94 37.31 1.47
6884 19921 2.096909 CGACCATATGATTCGGCGAAAC 60.097 50.000 27.40 23.98 0.00 2.78
6885 19922 2.869801 GACCATATGATTCGGCGAAACA 59.130 45.455 30.00 30.00 0.00 2.83
6887 19924 3.882888 ACCATATGATTCGGCGAAACATT 59.117 39.130 37.85 26.07 36.64 2.71
6888 19925 4.221342 CCATATGATTCGGCGAAACATTG 58.779 43.478 37.85 31.72 36.64 2.82
6891 19928 3.634568 TGATTCGGCGAAACATTGTTT 57.365 38.095 27.40 14.42 0.00 2.83
6894 19931 0.594110 TCGGCGAAACATTGTTTCCC 59.406 50.000 27.95 26.27 0.00 3.97
6895 19932 0.596082 CGGCGAAACATTGTTTCCCT 59.404 50.000 27.95 4.17 0.00 4.20
6896 19933 1.807742 CGGCGAAACATTGTTTCCCTA 59.192 47.619 27.95 0.00 0.00 3.53
6903 19954 5.596845 GAAACATTGTTTCCCTAGCACAAA 58.403 37.500 25.25 0.00 34.19 2.83
6905 19956 4.215109 ACATTGTTTCCCTAGCACAAAGT 58.785 39.130 0.00 0.00 34.19 2.66
6953 20006 2.756760 ACCAAACAATGCTAGCCTCATG 59.243 45.455 13.29 8.32 0.00 3.07
7001 20058 2.775890 ACAGTCCATGCAGAAACTCAG 58.224 47.619 0.00 0.00 0.00 3.35
7009 20066 4.379186 CCATGCAGAAACTCAGATTCACAC 60.379 45.833 0.00 0.00 0.00 3.82
7066 20123 2.396590 TTCCGAATTCTACCCAGCAC 57.603 50.000 3.52 0.00 0.00 4.40
7073 20130 4.698575 GAATTCTACCCAGCACTCTTAGG 58.301 47.826 0.00 0.00 0.00 2.69
7081 20138 2.359967 GCACTCTTAGGGGCGGTCT 61.360 63.158 0.00 0.00 0.00 3.85
7245 20302 2.752238 CTCGCCTCGACCACCTCT 60.752 66.667 0.00 0.00 0.00 3.69
7253 20310 4.373116 GACCACCTCTCGGCGCAA 62.373 66.667 10.83 0.00 0.00 4.85
7300 20357 0.669318 CCACTCCACACACGCGTAAT 60.669 55.000 13.44 0.00 0.00 1.89
7404 20461 1.146041 ACAGTGCGTCAAGAAGGCA 59.854 52.632 0.00 0.00 46.01 4.75
7440 20497 1.597854 CAGCACCGCCTCTTGTTCA 60.598 57.895 0.00 0.00 0.00 3.18
7518 20575 2.045926 GCGGCATCACCCTTCACT 60.046 61.111 0.00 0.00 33.26 3.41
7542 20599 3.334691 GTCATTCCTCACGATCCACAAA 58.665 45.455 0.00 0.00 0.00 2.83
7620 20677 0.693622 TGGTGGTTATGCTCCCGAAA 59.306 50.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 1033 7.977853 GCACCAAAATTTACATCATCTGATTCT 59.022 33.333 0.00 0.00 31.21 2.40
132 1590 6.676456 GCTTTTACATCATCTGTTACAGCAGG 60.676 42.308 7.61 0.00 39.39 4.85
133 1591 6.253746 GCTTTTACATCATCTGTTACAGCAG 58.746 40.000 7.61 2.63 39.39 4.24
135 1593 5.573146 GGCTTTTACATCATCTGTTACAGC 58.427 41.667 7.61 0.00 39.39 4.40
137 1595 4.634004 CCGGCTTTTACATCATCTGTTACA 59.366 41.667 0.00 0.00 39.39 2.41
141 1599 3.009723 CACCGGCTTTTACATCATCTGT 58.990 45.455 0.00 0.00 42.13 3.41
142 1600 2.223340 GCACCGGCTTTTACATCATCTG 60.223 50.000 0.00 0.00 36.96 2.90
143 1601 2.017049 GCACCGGCTTTTACATCATCT 58.983 47.619 0.00 0.00 36.96 2.90
147 1605 1.303091 ACGGCACCGGCTTTTACATC 61.303 55.000 14.51 0.00 44.69 3.06
148 1606 1.302993 ACGGCACCGGCTTTTACAT 60.303 52.632 14.51 0.00 44.69 2.29
166 1654 1.098869 TTGAAGAAGCCACGTTTGCA 58.901 45.000 9.31 0.00 0.00 4.08
167 1655 1.065551 AGTTGAAGAAGCCACGTTTGC 59.934 47.619 0.00 0.00 0.00 3.68
168 1656 4.213270 TGATAGTTGAAGAAGCCACGTTTG 59.787 41.667 0.00 0.00 0.00 2.93
169 1657 4.385825 TGATAGTTGAAGAAGCCACGTTT 58.614 39.130 0.00 0.00 0.00 3.60
170 1658 4.002906 TGATAGTTGAAGAAGCCACGTT 57.997 40.909 0.00 0.00 0.00 3.99
171 1659 3.678056 TGATAGTTGAAGAAGCCACGT 57.322 42.857 0.00 0.00 0.00 4.49
172 1660 5.356882 TTTTGATAGTTGAAGAAGCCACG 57.643 39.130 0.00 0.00 0.00 4.94
174 1662 6.707440 TGTTTTTGATAGTTGAAGAAGCCA 57.293 33.333 0.00 0.00 0.00 4.75
175 1663 9.691362 TTAATGTTTTTGATAGTTGAAGAAGCC 57.309 29.630 0.00 0.00 0.00 4.35
195 1683 6.723298 TCTGGGTTGAACATGTTTTAATGT 57.277 33.333 13.36 0.00 42.62 2.71
196 1684 9.874205 ATTATCTGGGTTGAACATGTTTTAATG 57.126 29.630 13.36 1.16 0.00 1.90
232 1720 9.650539 CCTCGTCTGATCAGATTAATTTGATAT 57.349 33.333 27.51 2.16 39.97 1.63
233 1721 8.090831 CCCTCGTCTGATCAGATTAATTTGATA 58.909 37.037 27.51 4.15 39.97 2.15
235 1723 6.098266 TCCCTCGTCTGATCAGATTAATTTGA 59.902 38.462 27.51 15.16 39.97 2.69
236 1724 6.283694 TCCCTCGTCTGATCAGATTAATTTG 58.716 40.000 27.51 13.33 39.97 2.32
238 1726 5.600484 ACTCCCTCGTCTGATCAGATTAATT 59.400 40.000 27.51 6.03 39.97 1.40
241 1729 3.885901 CACTCCCTCGTCTGATCAGATTA 59.114 47.826 27.51 17.22 39.97 1.75
242 1730 2.692557 CACTCCCTCGTCTGATCAGATT 59.307 50.000 27.51 3.47 39.97 2.40
243 1731 2.092158 TCACTCCCTCGTCTGATCAGAT 60.092 50.000 27.51 7.03 39.97 2.90
244 1732 1.282157 TCACTCCCTCGTCTGATCAGA 59.718 52.381 21.67 21.67 34.56 3.27
245 1733 1.403679 GTCACTCCCTCGTCTGATCAG 59.596 57.143 17.07 17.07 0.00 2.90
246 1734 1.464734 GTCACTCCCTCGTCTGATCA 58.535 55.000 0.00 0.00 0.00 2.92
248 1736 1.032657 CCGTCACTCCCTCGTCTGAT 61.033 60.000 0.00 0.00 0.00 2.90
249 1737 1.674651 CCGTCACTCCCTCGTCTGA 60.675 63.158 0.00 0.00 0.00 3.27
250 1738 0.675837 TACCGTCACTCCCTCGTCTG 60.676 60.000 0.00 0.00 0.00 3.51
251 1739 0.255318 ATACCGTCACTCCCTCGTCT 59.745 55.000 0.00 0.00 0.00 4.18
252 1740 0.381089 CATACCGTCACTCCCTCGTC 59.619 60.000 0.00 0.00 0.00 4.20
253 1741 1.035932 CCATACCGTCACTCCCTCGT 61.036 60.000 0.00 0.00 0.00 4.18
254 1742 1.734137 CCATACCGTCACTCCCTCG 59.266 63.158 0.00 0.00 0.00 4.63
255 1743 0.686769 ACCCATACCGTCACTCCCTC 60.687 60.000 0.00 0.00 0.00 4.30
256 1744 0.686769 GACCCATACCGTCACTCCCT 60.687 60.000 0.00 0.00 0.00 4.20
257 1745 0.686769 AGACCCATACCGTCACTCCC 60.687 60.000 0.00 0.00 32.41 4.30
258 1746 1.955080 CTAGACCCATACCGTCACTCC 59.045 57.143 0.00 0.00 32.41 3.85
259 1747 1.337387 GCTAGACCCATACCGTCACTC 59.663 57.143 0.00 0.00 32.41 3.51
260 1748 1.341679 TGCTAGACCCATACCGTCACT 60.342 52.381 0.00 0.00 32.41 3.41
262 1750 1.108776 GTGCTAGACCCATACCGTCA 58.891 55.000 0.00 0.00 32.41 4.35
263 1751 0.388294 GGTGCTAGACCCATACCGTC 59.612 60.000 0.00 0.00 39.10 4.79
264 1752 2.512973 GGTGCTAGACCCATACCGT 58.487 57.895 0.00 0.00 39.10 4.83
272 1760 2.736347 TCAAGACTAGGGTGCTAGACC 58.264 52.381 0.00 0.00 45.28 3.85
273 1761 5.378332 TCTATCAAGACTAGGGTGCTAGAC 58.622 45.833 0.00 0.00 0.00 2.59
275 1763 6.909550 AATCTATCAAGACTAGGGTGCTAG 57.090 41.667 0.00 0.00 33.57 3.42
277 1765 7.863901 ATAAATCTATCAAGACTAGGGTGCT 57.136 36.000 0.00 0.00 33.57 4.40
278 1766 8.910351 AAATAAATCTATCAAGACTAGGGTGC 57.090 34.615 0.00 0.00 33.57 5.01
294 1782 7.986889 AGCCGGCAAAATCAAATAAATAAATCT 59.013 29.630 31.54 0.00 0.00 2.40
295 1783 8.141835 AGCCGGCAAAATCAAATAAATAAATC 57.858 30.769 31.54 0.00 0.00 2.17
297 1785 9.039870 CATAGCCGGCAAAATCAAATAAATAAA 57.960 29.630 31.54 0.00 0.00 1.40
298 1786 7.655328 CCATAGCCGGCAAAATCAAATAAATAA 59.345 33.333 31.54 0.00 0.00 1.40
299 1787 7.151308 CCATAGCCGGCAAAATCAAATAAATA 58.849 34.615 31.54 7.00 0.00 1.40
317 2970 2.300433 TCATGTTCATGTGCCATAGCC 58.700 47.619 11.73 0.00 38.69 3.93
333 2986 4.099573 GGGTAGGATACGGACCATATCATG 59.900 50.000 9.66 0.00 46.13 3.07
334 2987 4.287552 GGGTAGGATACGGACCATATCAT 58.712 47.826 9.66 5.00 46.13 2.45
343 2996 0.703758 AGGGAGGGGTAGGATACGGA 60.704 60.000 0.00 0.00 44.28 4.69
345 2998 1.692519 CAAAGGGAGGGGTAGGATACG 59.307 57.143 0.00 0.00 44.28 3.06
346 2999 2.772930 ACAAAGGGAGGGGTAGGATAC 58.227 52.381 0.00 0.00 42.04 2.24
353 3006 0.482887 CAAGGAACAAAGGGAGGGGT 59.517 55.000 0.00 0.00 0.00 4.95
354 3007 0.482887 ACAAGGAACAAAGGGAGGGG 59.517 55.000 0.00 0.00 0.00 4.79
355 3008 1.144913 TCACAAGGAACAAAGGGAGGG 59.855 52.381 0.00 0.00 0.00 4.30
357 3010 4.021981 GGATTTCACAAGGAACAAAGGGAG 60.022 45.833 0.00 0.00 34.56 4.30
358 3011 3.895041 GGATTTCACAAGGAACAAAGGGA 59.105 43.478 0.00 0.00 34.56 4.20
359 3012 3.640967 TGGATTTCACAAGGAACAAAGGG 59.359 43.478 0.00 0.00 34.56 3.95
365 3018 4.335416 TCAGGATGGATTTCACAAGGAAC 58.665 43.478 0.00 0.00 33.28 3.62
367 3020 4.656100 TTCAGGATGGATTTCACAAGGA 57.344 40.909 0.00 0.00 36.16 3.36
370 3023 4.588106 TGCTTTTCAGGATGGATTTCACAA 59.412 37.500 0.00 0.00 36.16 3.33
386 3039 2.287009 CCTTCACCAACTCGTGCTTTTC 60.287 50.000 0.00 0.00 33.57 2.29
396 3360 0.770557 TGCCCCTACCTTCACCAACT 60.771 55.000 0.00 0.00 0.00 3.16
423 3387 1.476007 ATGCCTACCCTCTCCATCGC 61.476 60.000 0.00 0.00 0.00 4.58
430 3394 0.625849 CCAAACCATGCCTACCCTCT 59.374 55.000 0.00 0.00 0.00 3.69
441 3405 0.251564 TTGCGTGGGATCCAAACCAT 60.252 50.000 15.23 0.00 39.30 3.55
442 3406 1.151679 TTGCGTGGGATCCAAACCA 59.848 52.632 15.23 8.63 34.18 3.67
443 3407 1.584495 GTTGCGTGGGATCCAAACC 59.416 57.895 15.23 6.27 34.18 3.27
444 3408 1.209127 CGTTGCGTGGGATCCAAAC 59.791 57.895 15.23 10.36 34.18 2.93
446 3410 2.359354 CCGTTGCGTGGGATCCAA 60.359 61.111 15.23 0.00 34.18 3.53
467 3433 1.614413 GCCTACCCTCGTCCTTATCAG 59.386 57.143 0.00 0.00 0.00 2.90
471 3437 0.749454 GTCGCCTACCCTCGTCCTTA 60.749 60.000 0.00 0.00 0.00 2.69
486 3452 0.463654 TATGGGGATGCACAAGTCGC 60.464 55.000 0.00 0.00 0.00 5.19
510 3480 0.596600 GGACTTGCGTCTTGACGTCA 60.597 55.000 15.76 15.76 40.10 4.35
511 3481 1.282930 GGGACTTGCGTCTTGACGTC 61.283 60.000 21.62 9.11 40.10 4.34
513 3483 2.027625 GGGGACTTGCGTCTTGACG 61.028 63.158 17.53 17.53 40.10 4.35
544 3526 1.185618 TGACTGAGTTGGGGAGGTCG 61.186 60.000 0.00 0.00 0.00 4.79
545 3527 0.610687 CTGACTGAGTTGGGGAGGTC 59.389 60.000 0.00 0.00 0.00 3.85
546 3528 0.838122 CCTGACTGAGTTGGGGAGGT 60.838 60.000 0.00 0.00 0.00 3.85
547 3529 0.838122 ACCTGACTGAGTTGGGGAGG 60.838 60.000 9.70 0.00 0.00 4.30
574 3556 1.687014 GGAGGGCGAAAGGGGTTTA 59.313 57.895 0.00 0.00 0.00 2.01
581 3563 1.001406 CAGCTATAGGGAGGGCGAAAG 59.999 57.143 1.04 0.00 0.00 2.62
582 3564 1.048601 CAGCTATAGGGAGGGCGAAA 58.951 55.000 1.04 0.00 0.00 3.46
586 3568 0.833834 TGAGCAGCTATAGGGAGGGC 60.834 60.000 0.00 0.00 0.00 5.19
595 3577 4.205587 CCCTTCTGAAATTGAGCAGCTAT 58.794 43.478 0.00 0.00 32.27 2.97
612 3599 1.133606 TGTGGAGACAAAACCCCCTTC 60.134 52.381 0.00 0.00 46.06 3.46
656 3643 8.322091 TGTTTTCCTTTCTGAAACCCATTTTTA 58.678 29.630 0.00 0.00 34.13 1.52
665 3652 7.979537 AGGTAAATGTGTTTTCCTTTCTGAAAC 59.020 33.333 0.00 0.00 40.86 2.78
669 3656 7.141363 CAGAGGTAAATGTGTTTTCCTTTCTG 58.859 38.462 1.47 2.53 42.89 3.02
670 3657 6.239036 GCAGAGGTAAATGTGTTTTCCTTTCT 60.239 38.462 1.47 0.00 42.89 2.52
673 3660 4.892934 TGCAGAGGTAAATGTGTTTTCCTT 59.107 37.500 1.47 0.00 42.89 3.36
681 3668 2.416547 CTCCGTTGCAGAGGTAAATGTG 59.583 50.000 9.02 0.00 0.00 3.21
700 3687 1.878953 TCTTTCTGAAACACGGCCTC 58.121 50.000 0.00 0.00 0.00 4.70
701 3688 2.341846 TTCTTTCTGAAACACGGCCT 57.658 45.000 0.00 0.00 0.00 5.19
702 3689 3.430333 TTTTCTTTCTGAAACACGGCC 57.570 42.857 0.00 0.00 43.55 6.13
704 3691 6.751888 ACATTCTTTTTCTTTCTGAAACACGG 59.248 34.615 0.00 0.00 43.55 4.94
705 3692 7.740519 ACATTCTTTTTCTTTCTGAAACACG 57.259 32.000 0.00 0.00 43.55 4.49
724 3711 7.467557 TTTTTGCAATCACTCAGAAACATTC 57.532 32.000 0.00 0.00 0.00 2.67
774 3761 9.596308 AGTAATAATAAGGGTCTTTGGTTTTGT 57.404 29.630 0.00 0.00 0.00 2.83
778 3765 9.676861 GTGTAGTAATAATAAGGGTCTTTGGTT 57.323 33.333 0.00 0.00 0.00 3.67
780 3767 9.543783 GAGTGTAGTAATAATAAGGGTCTTTGG 57.456 37.037 0.00 0.00 0.00 3.28
815 3920 1.861575 GAGCAGTAATAAGAGCGCACC 59.138 52.381 11.47 0.00 0.00 5.01
817 3922 2.094234 TGTGAGCAGTAATAAGAGCGCA 60.094 45.455 11.47 0.00 34.50 6.09
819 3924 4.033990 TCTGTGAGCAGTAATAAGAGCG 57.966 45.455 0.00 0.00 43.05 5.03
885 3990 1.674057 GAGAGAGGTGTGTGTGGGG 59.326 63.158 0.00 0.00 0.00 4.96
888 3993 0.319728 CAGGGAGAGAGGTGTGTGTG 59.680 60.000 0.00 0.00 0.00 3.82
889 3994 0.105453 ACAGGGAGAGAGGTGTGTGT 60.105 55.000 0.00 0.00 0.00 3.72
921 4070 2.529632 GGAGCACCCAGAAGGAAAATT 58.470 47.619 0.00 0.00 39.89 1.82
998 4175 1.959985 GAGAGATCCCGAGCTTCATCA 59.040 52.381 0.00 0.00 0.00 3.07
1098 4305 0.743345 CCTGGTCCGAAATCGAACCC 60.743 60.000 8.79 4.00 43.02 4.11
1223 4457 2.754658 GAAGGCCTCCGACTCCGA 60.755 66.667 5.23 0.00 38.22 4.55
1308 4784 2.594592 AGTTCAGTGGCAACGGGC 60.595 61.111 0.00 0.00 43.74 6.13
1309 4785 2.317609 CGAGTTCAGTGGCAACGGG 61.318 63.158 0.00 0.00 42.51 5.28
1479 4975 4.336433 AGCAGATAACCAATCAACCAATCG 59.664 41.667 0.00 0.00 37.03 3.34
1485 4981 5.643379 TTCCAAGCAGATAACCAATCAAC 57.357 39.130 0.00 0.00 37.03 3.18
1508 5004 1.071436 GCACGAACGATTATTCCGAGC 60.071 52.381 0.14 0.00 0.00 5.03
1564 5061 3.832527 ACCAGTTTCAGTTTGGTGCTAT 58.167 40.909 0.00 0.00 43.32 2.97
1600 5105 3.010420 GAGGATTGGACAAGCAGGTAAC 58.990 50.000 2.57 0.00 0.00 2.50
1612 5117 2.632377 GTTCGCAGAATGAGGATTGGA 58.368 47.619 0.00 0.00 45.90 3.53
1619 5124 1.057847 GTCGTTCGTTCGCAGAATGAG 59.942 52.381 11.25 4.40 45.90 2.90
1625 5130 1.606350 GACTGGTCGTTCGTTCGCAG 61.606 60.000 0.00 0.00 0.00 5.18
1639 5144 2.398498 CACAGAAGAACACTCGACTGG 58.602 52.381 0.00 0.00 35.46 4.00
1645 5150 1.869767 CACAGCCACAGAAGAACACTC 59.130 52.381 0.00 0.00 0.00 3.51
1647 5152 0.947244 CCACAGCCACAGAAGAACAC 59.053 55.000 0.00 0.00 0.00 3.32
1657 5163 3.376078 CCATGCCACCACAGCCAC 61.376 66.667 0.00 0.00 0.00 5.01
1673 5179 2.959507 AAAAATACCAAGATGGCGCC 57.040 45.000 22.73 22.73 42.67 6.53
1695 5201 1.325037 TCAGTACACGTGCAACAAACG 59.675 47.619 17.22 5.00 46.32 3.60
1720 5226 5.407502 TGGTAAGACACTGAACATCATACG 58.592 41.667 0.00 0.00 0.00 3.06
1722 5228 7.004555 AGTTGGTAAGACACTGAACATCATA 57.995 36.000 0.00 0.00 0.00 2.15
1723 5229 5.869579 AGTTGGTAAGACACTGAACATCAT 58.130 37.500 0.00 0.00 0.00 2.45
1729 5235 6.426937 GCTGATAAAGTTGGTAAGACACTGAA 59.573 38.462 0.00 0.00 0.00 3.02
1777 5283 6.166279 CCGCTTCTGTAATATATGGTGTCAT 58.834 40.000 0.00 0.00 37.40 3.06
1861 5370 3.214328 ACCACAACCTGAAGTCATTCAC 58.786 45.455 0.00 0.00 40.54 3.18
1929 5438 7.282224 GGCACAAATACAGATAAACTACCATGA 59.718 37.037 0.00 0.00 0.00 3.07
2038 5547 3.574396 AGTAAGCTGTGAGTAGAAGCACA 59.426 43.478 0.00 0.00 42.25 4.57
2039 5548 4.181309 AGTAAGCTGTGAGTAGAAGCAC 57.819 45.455 0.00 0.00 39.47 4.40
2040 5549 5.010933 ACTAGTAAGCTGTGAGTAGAAGCA 58.989 41.667 0.00 0.00 39.47 3.91
2041 5550 5.570234 ACTAGTAAGCTGTGAGTAGAAGC 57.430 43.478 0.00 0.00 37.20 3.86
2042 5551 7.064371 TCGTAACTAGTAAGCTGTGAGTAGAAG 59.936 40.741 0.00 0.00 0.00 2.85
2043 5552 6.875726 TCGTAACTAGTAAGCTGTGAGTAGAA 59.124 38.462 0.00 0.00 0.00 2.10
2044 5553 6.401394 TCGTAACTAGTAAGCTGTGAGTAGA 58.599 40.000 0.00 1.84 0.00 2.59
2045 5554 6.659361 TCGTAACTAGTAAGCTGTGAGTAG 57.341 41.667 0.00 0.00 0.00 2.57
2046 5555 7.439157 TTTCGTAACTAGTAAGCTGTGAGTA 57.561 36.000 0.00 0.00 0.00 2.59
2047 5556 5.954296 TTCGTAACTAGTAAGCTGTGAGT 57.046 39.130 0.00 0.00 0.00 3.41
2048 5557 8.959058 CATATTTCGTAACTAGTAAGCTGTGAG 58.041 37.037 0.00 0.00 0.00 3.51
2049 5558 8.464404 ACATATTTCGTAACTAGTAAGCTGTGA 58.536 33.333 0.00 0.00 0.00 3.58
2062 5585 7.391786 CACAAGAGCTACACATATTTCGTAAC 58.608 38.462 0.00 0.00 0.00 2.50
2100 5738 6.320171 CAATGAGATGACAAATTGAGGTCAC 58.680 40.000 0.00 5.40 45.84 3.67
2108 5746 3.196254 GGCCACCAATGAGATGACAAATT 59.804 43.478 0.00 0.00 0.00 1.82
2113 5751 1.386533 CTGGCCACCAATGAGATGAC 58.613 55.000 0.00 0.00 30.80 3.06
2204 5842 2.032528 TGCTGCTGGGGTTCTTCG 59.967 61.111 0.00 0.00 0.00 3.79
2235 5873 1.221021 GGGTAGTGCTGCTGGGTAC 59.779 63.158 0.00 0.00 0.00 3.34
2257 5895 0.790993 TGTAGGAGAGGGGTTCCAGT 59.209 55.000 0.00 0.00 37.18 4.00
2400 6038 2.529151 CATAAAAGCACACGCCAATCC 58.471 47.619 0.00 0.00 39.83 3.01
2403 6041 0.958091 AGCATAAAAGCACACGCCAA 59.042 45.000 0.00 0.00 39.83 4.52
2421 6059 3.122297 CAGCTTCCGATGCTCTTTCTAG 58.878 50.000 5.82 0.00 38.92 2.43
2433 6072 1.040646 AGACACAGAACAGCTTCCGA 58.959 50.000 0.00 0.00 0.00 4.55
2441 6080 2.891580 GGTGAGGTCTAGACACAGAACA 59.108 50.000 23.91 10.93 34.49 3.18
2559 6198 3.393800 CTTGTGTACTGAACCTGACAGG 58.606 50.000 20.45 20.45 42.49 4.00
2623 6262 2.671396 CGTCCTTCATGGTTCGGTTTAG 59.329 50.000 0.00 0.00 37.07 1.85
2711 6350 6.985645 TCAAAGTGCAAAGTTTATGAGCAAAT 59.014 30.769 0.36 0.00 36.91 2.32
2777 6420 6.201044 AGCTGCACATAACAGATAAATACGAC 59.799 38.462 1.02 0.00 37.32 4.34
2807 6450 4.362279 GAGATCAAACTTTTGCTGCACAA 58.638 39.130 0.00 0.34 38.05 3.33
3000 6643 5.748402 AGTTGATTACATTCAGCTGATCCA 58.252 37.500 19.04 2.52 36.06 3.41
3001 6644 6.054295 AGAGTTGATTACATTCAGCTGATCC 58.946 40.000 19.04 0.00 37.31 3.36
3191 6838 4.829064 TTCCTGAAGACAAAATGAACCG 57.171 40.909 0.00 0.00 0.00 4.44
3460 7362 6.491714 AGAGTGACATGCCACTTAATAGAT 57.508 37.500 16.28 0.00 46.45 1.98
3487 7389 3.428452 CCGCGTAGGTTTCTTCAGTATGA 60.428 47.826 4.92 0.00 38.34 2.15
3488 7390 2.858344 CCGCGTAGGTTTCTTCAGTATG 59.142 50.000 4.92 0.00 34.51 2.39
3489 7391 2.756760 TCCGCGTAGGTTTCTTCAGTAT 59.243 45.455 4.92 0.00 41.99 2.12
3507 7409 3.370978 CAGTTGTAGTGCAAACCTATCCG 59.629 47.826 0.00 0.00 39.03 4.18
3514 7416 1.946768 TCAGGCAGTTGTAGTGCAAAC 59.053 47.619 8.58 0.00 46.06 2.93
3594 7496 1.108776 CATTGGCATTACAGCAGGCT 58.891 50.000 0.00 0.00 35.83 4.58
4321 8386 2.501723 TGTTCTCTGATGCCCCTTCTAC 59.498 50.000 0.00 0.00 0.00 2.59
4339 8404 9.860650 TCTAAATTATAGGGCATACATGTTGTT 57.139 29.630 2.30 0.00 0.00 2.83
4374 8439 4.895297 ACACCCTTTCATGAAAACTGTGAT 59.105 37.500 30.92 20.42 32.37 3.06
4445 8511 6.671614 ACAATCTTCGTACTTGTGTTCAAA 57.328 33.333 0.00 0.00 32.16 2.69
4496 8562 7.288389 ACCACAGGATTATGCAAATATGAATGT 59.712 33.333 0.00 0.00 0.00 2.71
4506 8572 4.580167 GCATCTTACCACAGGATTATGCAA 59.420 41.667 0.00 0.00 38.61 4.08
4590 8657 6.714810 AGAGTGTTTTGGAGCAATACAACATA 59.285 34.615 0.00 0.00 37.14 2.29
4709 8788 6.036517 CAGAATCCAGAAATCTAACAAGGACG 59.963 42.308 0.00 0.00 0.00 4.79
4769 8848 4.382254 CGCCCTTGTAGTATAAGTGGAACA 60.382 45.833 14.32 0.00 41.43 3.18
4793 8872 1.986882 ACCTTTGGCTTCAGAACTGG 58.013 50.000 1.93 0.00 0.00 4.00
4943 9022 6.129179 ACCCATTTCATTACGATGGAAAGAT 58.871 36.000 3.28 0.00 42.31 2.40
4997 9085 2.304751 AATCGTACCCAAACTAGCCG 57.695 50.000 0.00 0.00 0.00 5.52
5140 9231 4.745125 AGAATCGTAACTCAATGGTATGCG 59.255 41.667 0.00 0.00 0.00 4.73
5188 9288 0.455633 GCAGCTTCAAGCATGTTCCG 60.456 55.000 13.10 0.00 45.56 4.30
5292 9420 9.889128 TGCCATTATCTGAATCGATGATTATTA 57.111 29.630 0.00 0.00 31.89 0.98
5325 9453 2.270874 AATCATCCGGGGAGTGCACC 62.271 60.000 14.63 4.90 0.00 5.01
5333 9461 2.224606 CATGTTCAGAATCATCCGGGG 58.775 52.381 0.00 0.00 0.00 5.73
5418 13888 4.034410 GTCAGGGTCTTCCTCTCCTATTT 58.966 47.826 0.00 0.00 46.12 1.40
5438 13908 8.417106 TCTCTCTGTTATGAATGATTACCAGTC 58.583 37.037 0.00 0.00 40.08 3.51
5452 13922 5.048434 TGCCGATGACTATCTCTCTGTTATG 60.048 44.000 0.00 0.00 0.00 1.90
5476 13948 5.413499 ACTAGTACGTGGCAAATCGTAATT 58.587 37.500 12.96 6.92 42.62 1.40
5482 13954 7.399523 CAATAGAAACTAGTACGTGGCAAATC 58.600 38.462 0.00 0.00 0.00 2.17
5487 13959 3.242248 CGCAATAGAAACTAGTACGTGGC 59.758 47.826 0.00 0.00 0.00 5.01
5492 13964 4.318831 GCATGCCGCAATAGAAACTAGTAC 60.319 45.833 6.36 0.00 41.79 2.73
5519 13991 7.170658 CGAATTTCTTGGTTCTTTGGCAATAAA 59.829 33.333 0.00 0.00 0.00 1.40
5525 13997 2.731451 GCGAATTTCTTGGTTCTTTGGC 59.269 45.455 0.00 0.00 0.00 4.52
5566 14044 2.328473 GGTGCGATTTGCTTCTTTTCC 58.672 47.619 0.00 0.00 46.63 3.13
5582 14060 6.644347 AGCATATATACATAACAGAGGGTGC 58.356 40.000 0.00 0.00 0.00 5.01
5607 14085 0.178921 TCCTTCCTCAGGTCAGCTGT 60.179 55.000 14.67 0.00 44.37 4.40
5727 14205 1.911471 GCCTCCTCTTCTCCCCTTG 59.089 63.158 0.00 0.00 0.00 3.61
5778 14256 1.014352 GCTTCAACCGTGTGAACAGT 58.986 50.000 0.00 0.00 33.92 3.55
5920 14398 2.677337 GTGCAATGTTGTTGCCAAAGTT 59.323 40.909 9.94 0.00 44.32 2.66
5936 14417 2.988493 GGTGAAACGATACTACGTGCAA 59.012 45.455 0.00 0.00 45.83 4.08
5942 14423 5.508657 GGGGTCATAGGTGAAACGATACTAC 60.509 48.000 0.00 0.00 38.12 2.73
6022 14516 8.652810 ACAGATGAAATGGTTGAAAGAAAAAG 57.347 30.769 0.00 0.00 0.00 2.27
6028 14523 7.775397 AAACAACAGATGAAATGGTTGAAAG 57.225 32.000 10.00 0.00 39.34 2.62
6043 14538 1.603678 GGACCTCGCGTAAACAACAGA 60.604 52.381 5.77 0.00 0.00 3.41
6071 14566 6.210796 TCATTTGCAATTCTTCAGTCTGTTG 58.789 36.000 0.00 0.00 0.00 3.33
6101 14596 6.624352 ACCATATTGCAAGTGCTAGTTATG 57.376 37.500 4.94 5.44 42.66 1.90
6103 14598 6.288294 CCTACCATATTGCAAGTGCTAGTTA 58.712 40.000 4.94 0.00 42.66 2.24
6144 14640 6.631962 ACTAACTTGGAAGTATAGACTGCAC 58.368 40.000 0.00 0.00 38.57 4.57
6149 14645 7.407393 AGTGGACTAACTTGGAAGTATAGAC 57.593 40.000 12.06 8.12 38.57 2.59
6156 14652 4.021016 AGTGCTAGTGGACTAACTTGGAAG 60.021 45.833 0.00 0.00 43.13 3.46
6196 14692 7.505258 GCTATAGGAAGTTCTGAGGAAGAAAT 58.495 38.462 2.25 0.00 46.51 2.17
6199 14695 4.580995 CGCTATAGGAAGTTCTGAGGAAGA 59.419 45.833 2.25 0.00 31.46 2.87
6210 14706 0.816825 TCGTCGGCGCTATAGGAAGT 60.817 55.000 3.52 0.00 38.14 3.01
6212 14708 1.736126 CTATCGTCGGCGCTATAGGAA 59.264 52.381 3.52 0.00 38.14 3.36
6216 14712 2.002586 GTACCTATCGTCGGCGCTATA 58.997 52.381 3.52 0.00 38.14 1.31
6261 14757 5.417811 ACAAATGCACATGTTGTTTCAGAA 58.582 33.333 0.00 0.00 31.52 3.02
6274 14770 6.989759 TCAGAAGAGTAACTAACAAATGCACA 59.010 34.615 0.00 0.00 0.00 4.57
6282 14780 7.486647 ACGAAGTTTCAGAAGAGTAACTAACA 58.513 34.615 0.00 0.00 37.78 2.41
6325 14823 6.574073 GCCCATCTGTGTGAAAATTATCCAAA 60.574 38.462 0.00 0.00 0.00 3.28
6326 14824 5.105392 GCCCATCTGTGTGAAAATTATCCAA 60.105 40.000 0.00 0.00 0.00 3.53
6327 14825 4.402155 GCCCATCTGTGTGAAAATTATCCA 59.598 41.667 0.00 0.00 0.00 3.41
6342 14840 0.535780 ACGCCATACATGCCCATCTG 60.536 55.000 0.00 0.00 0.00 2.90
6381 14879 3.608474 CGCTCCCTTACCAAAAGAAAACG 60.608 47.826 0.00 0.00 0.00 3.60
6508 17396 3.892522 TGATTATCGGTGGTCGTAATCG 58.107 45.455 0.00 0.00 40.47 3.34
6514 17402 1.407618 TGGTCTGATTATCGGTGGTCG 59.592 52.381 0.57 0.00 40.90 4.79
6538 19293 1.224075 CAGCAGCAGGACCAATATCG 58.776 55.000 0.00 0.00 0.00 2.92
6625 19623 5.435291 GTCATCCCACAAATCTCTTCTCAT 58.565 41.667 0.00 0.00 0.00 2.90
6636 19634 5.512942 TTCTATTCTGGTCATCCCACAAA 57.487 39.130 0.00 0.00 38.72 2.83
6645 19643 3.387962 AGGGCAGATTCTATTCTGGTCA 58.612 45.455 3.85 0.00 42.78 4.02
6649 19647 4.952335 ACCAAAAGGGCAGATTCTATTCTG 59.048 41.667 0.00 0.00 44.87 3.02
6669 19667 9.706691 GATTTATTTTATCCTACGATCTCACCA 57.293 33.333 0.00 0.00 0.00 4.17
6715 19751 4.160252 GCATTCTAGGGGCAGAATTTTTCA 59.840 41.667 0.00 0.00 41.46 2.69
6716 19752 4.160252 TGCATTCTAGGGGCAGAATTTTTC 59.840 41.667 0.00 0.00 41.46 2.29
6737 19774 5.103290 TCTTTCAGGAAAACGTGTAATGC 57.897 39.130 0.00 0.00 0.00 3.56
6769 19806 2.587194 CGATGGAGAGGCAAGGCG 60.587 66.667 0.00 0.00 0.00 5.52
6770 19807 1.522580 GTCGATGGAGAGGCAAGGC 60.523 63.158 0.00 0.00 0.00 4.35
6775 19812 1.957177 TGTATCAGTCGATGGAGAGGC 59.043 52.381 0.00 0.00 32.73 4.70
6776 19813 2.031595 CGTGTATCAGTCGATGGAGAGG 60.032 54.545 0.00 0.00 32.73 3.69
6795 19832 8.732746 ATACTTTGAAAAGAATATGGCTACGT 57.267 30.769 9.71 0.00 39.31 3.57
6884 19921 4.520492 AGACTTTGTGCTAGGGAAACAATG 59.480 41.667 0.00 0.00 34.04 2.82
6885 19922 4.729868 AGACTTTGTGCTAGGGAAACAAT 58.270 39.130 0.00 0.00 34.04 2.71
6887 19924 3.857157 AGACTTTGTGCTAGGGAAACA 57.143 42.857 0.00 0.00 0.00 2.83
6888 19925 5.306394 AGTTAGACTTTGTGCTAGGGAAAC 58.694 41.667 0.00 0.00 0.00 2.78
6891 19928 4.838986 AGAAGTTAGACTTTGTGCTAGGGA 59.161 41.667 0.00 0.00 38.80 4.20
6894 19931 4.324936 GCGAGAAGTTAGACTTTGTGCTAG 59.675 45.833 0.00 0.00 38.80 3.42
6895 19932 4.235360 GCGAGAAGTTAGACTTTGTGCTA 58.765 43.478 0.00 0.00 38.80 3.49
6896 19933 3.060602 GCGAGAAGTTAGACTTTGTGCT 58.939 45.455 0.00 0.00 38.80 4.40
6903 19954 0.109226 GCCGTGCGAGAAGTTAGACT 60.109 55.000 0.00 0.00 0.00 3.24
6905 19956 1.214589 GGCCGTGCGAGAAGTTAGA 59.785 57.895 0.00 0.00 0.00 2.10
6961 20014 1.378531 TGATCCAATAAGGCGTGTGC 58.621 50.000 0.00 0.00 41.71 4.57
6962 20015 2.746904 TGTTGATCCAATAAGGCGTGTG 59.253 45.455 0.00 0.00 37.29 3.82
7001 20058 2.814336 GACAGGTTGGGAAGTGTGAATC 59.186 50.000 0.00 0.00 0.00 2.52
7033 20090 3.425577 TTCGGAATTTGAGATGCATGC 57.574 42.857 11.82 11.82 0.00 4.06
7066 20123 1.033574 CTACAGACCGCCCCTAAGAG 58.966 60.000 0.00 0.00 0.00 2.85
7073 20130 0.388294 GGATGTACTACAGACCGCCC 59.612 60.000 0.00 0.00 0.00 6.13
7081 20138 7.614192 TGAGAGTATGTTCAAGGATGTACTACA 59.386 37.037 0.00 0.00 0.00 2.74
7245 20302 0.957888 TTGGTGATGATTTGCGCCGA 60.958 50.000 4.18 0.00 37.49 5.54
7253 20310 3.011595 TGGGATGGAAGTTGGTGATGATT 59.988 43.478 0.00 0.00 0.00 2.57
7300 20357 0.823356 GAGCAGCAAACCAACTCCCA 60.823 55.000 0.00 0.00 0.00 4.37
7434 20491 0.391228 TAGCGAGCTGGTGTGAACAA 59.609 50.000 7.99 0.00 0.00 2.83
7440 20497 2.055042 CCTCCTAGCGAGCTGGTGT 61.055 63.158 7.99 0.00 37.27 4.16
7494 20551 2.267642 GGTGATGCCGCTGTGGTA 59.732 61.111 9.31 4.55 41.21 3.25
7496 20553 3.925630 AAGGGTGATGCCGCTGTGG 62.926 63.158 2.05 2.05 42.50 4.17
7500 20557 1.264749 TAGTGAAGGGTGATGCCGCT 61.265 55.000 0.00 0.00 38.44 5.52
7542 20599 0.949105 CCAACTGCGGCTACGACTTT 60.949 55.000 0.00 0.00 44.60 2.66
7581 20638 1.951209 TGTCCATCCAAGAGCTGGTA 58.049 50.000 0.00 0.00 46.51 3.25
7594 20651 2.423373 GGAGCATAACCACCATGTCCAT 60.423 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.