Multiple sequence alignment - TraesCS2D01G030500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G030500 chr2D 100.000 3922 0 0 1 3922 12415792 12411871 0.000000e+00 7243.0
1 TraesCS2D01G030500 chr2B 89.453 2048 146 33 1 2030 18825072 18823077 0.000000e+00 2521.0
2 TraesCS2D01G030500 chr2B 95.328 1113 43 6 2272 3381 18820198 18819092 0.000000e+00 1759.0
3 TraesCS2D01G030500 chr2B 92.402 487 24 6 3438 3922 18819094 18818619 0.000000e+00 682.0
4 TraesCS2D01G030500 chr2B 89.151 212 22 1 2028 2239 18823048 18822838 3.010000e-66 263.0
5 TraesCS2D01G030500 chr2B 80.144 277 47 5 371 645 558010961 558010691 2.390000e-47 200.0
6 TraesCS2D01G030500 chr1A 83.162 291 42 7 385 673 533144990 533144705 3.890000e-65 259.0
7 TraesCS2D01G030500 chr6B 81.703 317 48 9 364 675 26012966 26012655 5.030000e-64 255.0
8 TraesCS2D01G030500 chr1B 81.935 310 47 8 367 673 589068385 589068082 1.810000e-63 254.0
9 TraesCS2D01G030500 chr6A 79.189 370 70 6 2616 2981 7596003 7595637 2.340000e-62 250.0
10 TraesCS2D01G030500 chr3A 82.000 300 48 6 381 678 164407945 164407650 2.340000e-62 250.0
11 TraesCS2D01G030500 chr4B 80.000 325 61 4 353 675 41756088 41755766 1.820000e-58 237.0
12 TraesCS2D01G030500 chr1D 81.690 284 49 3 371 653 435753760 435753479 2.360000e-57 233.0
13 TraesCS2D01G030500 chr5B 81.481 243 40 4 364 606 139411941 139411704 1.110000e-45 195.0
14 TraesCS2D01G030500 chr4A 97.297 37 1 0 3852 3888 11837610 11837646 3.270000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G030500 chr2D 12411871 12415792 3921 True 7243.00 7243 100.0000 1 3922 1 chr2D.!!$R1 3921
1 TraesCS2D01G030500 chr2B 18818619 18825072 6453 True 1306.25 2521 91.5835 1 3922 4 chr2B.!!$R2 3921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 185 0.105401 TACCACCCCATATCCGCTCA 60.105 55.0 0.00 0.0 0.00 4.26 F
266 270 0.114168 AGGGTGGCCATTTTGCTACA 59.886 50.0 9.72 0.0 43.75 2.74 F
464 468 0.180406 GGCCCACCTCGACATACAAT 59.820 55.0 0.00 0.0 0.00 2.71 F
1816 1826 0.603707 ACCCATCCATATCAAGCGCG 60.604 55.0 0.00 0.0 0.00 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1504 0.249573 TTGAGGACGTCGTTGAACCC 60.250 55.000 12.67 0.0 0.0 4.11 R
2202 2328 0.250166 ACCGTTGTTTTCTCCCTCCG 60.250 55.000 0.00 0.0 0.0 4.63 R
2203 2329 1.202722 TCACCGTTGTTTTCTCCCTCC 60.203 52.381 0.00 0.0 0.0 4.30 R
3706 6368 0.399454 TAGAGTCGGGGAGGGTATCG 59.601 60.000 0.00 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 1.151760 TCATGATGGAATGGGAGGGG 58.848 55.000 0.00 0.00 0.00 4.79
27 29 3.878667 GGAATGGGAGGGGAGCGG 61.879 72.222 0.00 0.00 0.00 5.52
70 72 1.817447 GCGGTCAACACTACTCTAGGT 59.183 52.381 0.00 0.00 0.00 3.08
80 82 5.374071 ACACTACTCTAGGTTTTGGTTTGG 58.626 41.667 0.00 0.00 0.00 3.28
92 94 4.396357 TTTGGTTTGGGGTGATGATAGT 57.604 40.909 0.00 0.00 0.00 2.12
95 97 3.016736 GGTTTGGGGTGATGATAGTGTG 58.983 50.000 0.00 0.00 0.00 3.82
96 98 3.016736 GTTTGGGGTGATGATAGTGTGG 58.983 50.000 0.00 0.00 0.00 4.17
100 102 1.141053 GGGTGATGATAGTGTGGGGTC 59.859 57.143 0.00 0.00 0.00 4.46
117 119 1.482593 GGTCTATGTGGGGTCAGACTG 59.517 57.143 0.00 0.00 37.99 3.51
121 123 3.249189 GTGGGGTCAGACTGGGCA 61.249 66.667 1.81 0.00 0.00 5.36
123 125 2.034221 GGGGTCAGACTGGGCAAC 59.966 66.667 1.81 0.00 0.00 4.17
142 146 1.337384 CCTGGGATGGTCGACATGGA 61.337 60.000 18.91 0.00 40.72 3.41
152 156 2.592861 GACATGGAGGCCGCATCC 60.593 66.667 17.30 17.30 37.35 3.51
154 158 4.240103 CATGGAGGCCGCATCCGA 62.240 66.667 18.72 8.84 39.91 4.55
155 159 3.933722 ATGGAGGCCGCATCCGAG 61.934 66.667 18.72 0.00 39.91 4.63
157 161 4.899239 GGAGGCCGCATCCGAGTG 62.899 72.222 8.58 0.00 36.29 3.51
161 165 4.451150 GCCGCATCCGAGTGTCCA 62.451 66.667 0.00 0.00 36.29 4.02
176 180 2.039879 GTGTCCATACCACCCCATATCC 59.960 54.545 0.00 0.00 0.00 2.59
181 185 0.105401 TACCACCCCATATCCGCTCA 60.105 55.000 0.00 0.00 0.00 4.26
183 187 0.401738 CCACCCCATATCCGCTCAAT 59.598 55.000 0.00 0.00 0.00 2.57
189 193 4.067896 CCCCATATCCGCTCAATATATGC 58.932 47.826 0.00 0.00 33.93 3.14
190 194 4.444733 CCCCATATCCGCTCAATATATGCA 60.445 45.833 0.00 0.00 33.93 3.96
199 203 4.754618 CGCTCAATATATGCACTGGGTTTA 59.245 41.667 0.00 0.00 0.00 2.01
200 204 5.334105 CGCTCAATATATGCACTGGGTTTAC 60.334 44.000 0.00 0.00 0.00 2.01
201 205 5.530915 GCTCAATATATGCACTGGGTTTACA 59.469 40.000 0.00 0.00 0.00 2.41
228 232 2.042162 AGACAATCTGGACATTTGGGCT 59.958 45.455 0.00 0.00 0.00 5.19
229 233 2.827921 GACAATCTGGACATTTGGGCTT 59.172 45.455 0.00 0.00 0.00 4.35
233 237 1.144708 TCTGGACATTTGGGCTTGTCA 59.855 47.619 5.53 0.00 43.20 3.58
245 249 1.149174 CTTGTCATGGGGGATCCGG 59.851 63.158 5.45 0.00 38.76 5.14
265 269 0.532115 CAGGGTGGCCATTTTGCTAC 59.468 55.000 9.72 0.00 41.51 3.58
266 270 0.114168 AGGGTGGCCATTTTGCTACA 59.886 50.000 9.72 0.00 43.75 2.74
281 285 0.830648 CTACATGATGGTGACCGGGT 59.169 55.000 6.32 0.00 0.00 5.28
290 294 4.006357 TGACCGGGTTGTACGCCC 62.006 66.667 6.32 13.64 42.68 6.13
291 295 4.006357 GACCGGGTTGTACGCCCA 62.006 66.667 20.87 0.00 46.40 5.36
305 309 1.817209 GCCCAGACGTCTTAGGGAG 59.183 63.158 34.25 19.31 44.30 4.30
307 311 1.043673 CCCAGACGTCTTAGGGAGGG 61.044 65.000 28.96 23.93 44.30 4.30
311 315 2.094130 CAGACGTCTTAGGGAGGGTTTC 60.094 54.545 17.26 0.00 34.47 2.78
322 326 0.704664 GAGGGTTTCAGGGGTCCAAT 59.295 55.000 0.00 0.00 0.00 3.16
324 328 1.203174 AGGGTTTCAGGGGTCCAATTG 60.203 52.381 0.00 0.00 0.00 2.32
339 343 5.193679 GTCCAATTGTAGATGCCCTAACTT 58.806 41.667 4.43 0.00 0.00 2.66
341 345 6.826741 GTCCAATTGTAGATGCCCTAACTTTA 59.173 38.462 4.43 0.00 0.00 1.85
351 355 6.665248 AGATGCCCTAACTTTATGCTTCTTTT 59.335 34.615 0.00 0.00 34.09 2.27
353 357 5.772672 TGCCCTAACTTTATGCTTCTTTTCA 59.227 36.000 0.00 0.00 0.00 2.69
399 403 9.232473 GGTCATCCCCACTAATTTATTTATCTC 57.768 37.037 0.00 0.00 0.00 2.75
401 405 9.793259 TCATCCCCACTAATTTATTTATCTCAC 57.207 33.333 0.00 0.00 0.00 3.51
418 422 9.764363 TTTATCTCACCATGTAAGTATGTCATC 57.236 33.333 0.00 0.00 0.00 2.92
419 423 7.609097 ATCTCACCATGTAAGTATGTCATCT 57.391 36.000 0.00 0.00 0.00 2.90
420 424 7.043961 TCTCACCATGTAAGTATGTCATCTC 57.956 40.000 0.00 0.00 0.00 2.75
427 431 7.600375 CCATGTAAGTATGTCATCTCACCATAC 59.400 40.741 0.00 0.00 40.65 2.39
445 449 9.519191 TCACCATACAATTATGAATGGGATAAG 57.481 33.333 5.29 0.00 42.66 1.73
446 450 8.742777 CACCATACAATTATGAATGGGATAAGG 58.257 37.037 5.29 0.00 42.66 2.69
464 468 0.180406 GGCCCACCTCGACATACAAT 59.820 55.000 0.00 0.00 0.00 2.71
473 477 3.187842 CCTCGACATACAATCATGCATGG 59.812 47.826 25.97 12.93 35.05 3.66
477 481 4.036616 CGACATACAATCATGCATGGGAAA 59.963 41.667 25.97 7.59 35.05 3.13
483 487 2.601240 TCATGCATGGGAAAAGACCA 57.399 45.000 25.97 0.00 43.22 4.02
495 499 4.368315 GGAAAAGACCAACCACAACATTC 58.632 43.478 0.00 0.00 0.00 2.67
512 516 8.670135 CACAACATTCAATTATGCATGGAAAAT 58.330 29.630 10.16 0.00 34.90 1.82
515 519 9.451002 AACATTCAATTATGCATGGAAAATTGA 57.549 25.926 22.66 22.66 43.15 2.57
527 531 6.990349 GCATGGAAAATTGATCTCCATTCAAT 59.010 34.615 10.03 0.00 45.73 2.57
616 621 8.944029 TGTATTTTAAATTTTGATGCCCATGTG 58.056 29.630 0.00 0.00 0.00 3.21
619 624 6.798315 TTAAATTTTGATGCCCATGTGTTG 57.202 33.333 0.00 0.00 0.00 3.33
620 625 4.620589 AATTTTGATGCCCATGTGTTGA 57.379 36.364 0.00 0.00 0.00 3.18
623 628 2.291209 TGATGCCCATGTGTTGAACT 57.709 45.000 0.00 0.00 0.00 3.01
626 631 2.291209 TGCCCATGTGTTGAACTCAT 57.709 45.000 7.03 7.03 33.10 2.90
627 632 2.596346 TGCCCATGTGTTGAACTCATT 58.404 42.857 9.89 0.00 30.75 2.57
631 636 4.448732 GCCCATGTGTTGAACTCATTTTTC 59.551 41.667 9.89 0.00 30.75 2.29
644 649 9.912634 TGAACTCATTTTTCTATCAACCAATTC 57.087 29.630 0.00 0.00 0.00 2.17
650 655 2.917933 TCTATCAACCAATTCCGGCAG 58.082 47.619 0.00 0.00 0.00 4.85
653 658 1.213537 CAACCAATTCCGGCAGCAG 59.786 57.895 0.00 0.00 0.00 4.24
678 684 4.267928 CGCGGGTTATTCTCTAGTTTTCTG 59.732 45.833 0.00 0.00 0.00 3.02
702 708 4.391155 TGGTCGCAAGTACATTTACCTTT 58.609 39.130 0.00 0.00 39.48 3.11
703 709 4.453136 TGGTCGCAAGTACATTTACCTTTC 59.547 41.667 0.00 0.00 39.48 2.62
706 712 6.293790 GGTCGCAAGTACATTTACCTTTCTTT 60.294 38.462 0.00 0.00 39.48 2.52
707 713 7.095102 GGTCGCAAGTACATTTACCTTTCTTTA 60.095 37.037 0.00 0.00 39.48 1.85
708 714 8.448615 GTCGCAAGTACATTTACCTTTCTTTAT 58.551 33.333 0.00 0.00 39.48 1.40
709 715 9.005777 TCGCAAGTACATTTACCTTTCTTTATT 57.994 29.630 0.00 0.00 39.48 1.40
710 716 9.620660 CGCAAGTACATTTACCTTTCTTTATTT 57.379 29.630 0.00 0.00 0.00 1.40
793 799 5.180680 GGTAGGTAGATTTTGTTGTGTCACC 59.819 44.000 0.00 0.00 0.00 4.02
808 814 9.823647 TGTTGTGTCACCAATTTTATTTGTATT 57.176 25.926 0.00 0.00 0.00 1.89
857 863 6.926313 ACAGTTAGAGAAGTGAGGACAATAC 58.074 40.000 0.00 0.00 38.12 1.89
948 954 4.207841 GCTTTCATTTGCAGTGAAGTTGTC 59.792 41.667 13.94 3.55 36.96 3.18
974 980 6.696825 GCTTAAGCAGCCTAAAAAGAAAAG 57.303 37.500 22.59 0.00 43.65 2.27
976 982 6.701841 GCTTAAGCAGCCTAAAAAGAAAAGTT 59.298 34.615 22.59 0.00 43.65 2.66
977 983 7.306807 GCTTAAGCAGCCTAAAAAGAAAAGTTG 60.307 37.037 22.59 0.00 43.65 3.16
978 984 5.598416 AGCAGCCTAAAAAGAAAAGTTGT 57.402 34.783 0.00 0.00 0.00 3.32
979 985 5.592054 AGCAGCCTAAAAAGAAAAGTTGTC 58.408 37.500 0.00 0.00 0.00 3.18
980 986 5.360999 AGCAGCCTAAAAAGAAAAGTTGTCT 59.639 36.000 0.00 0.00 0.00 3.41
989 995 8.858003 AAAAAGAAAAGTTGTCTAGCTTAAGC 57.142 30.769 20.09 20.09 42.49 3.09
995 1001 3.133183 AGTTGTCTAGCTTAAGCCCTAGC 59.867 47.826 23.71 14.69 43.38 3.42
998 1004 2.036604 GTCTAGCTTAAGCCCTAGCCAG 59.963 54.545 23.71 9.60 43.38 4.85
1113 1119 1.664965 GTCGCTCAGGTGTGTGGTC 60.665 63.158 0.00 0.00 0.00 4.02
1257 1263 1.145738 ACCACCTCTGGCATTTTCACT 59.854 47.619 0.00 0.00 42.08 3.41
1385 1394 0.677414 AACCCTCTCGTCGTCTCCTC 60.677 60.000 0.00 0.00 0.00 3.71
1398 1407 1.153005 CTCCTCCTTCAGCATGCCC 60.153 63.158 15.66 0.00 34.76 5.36
1426 1435 3.827898 GGACCGAGCCTGAGGACG 61.828 72.222 0.65 7.14 0.00 4.79
1495 1504 3.958147 ATGGTCAGCAAGGACGCCG 62.958 63.158 0.00 0.00 38.70 6.46
1614 1623 2.099831 CTCGTCGACGTAGGTGGC 59.900 66.667 34.40 0.00 40.80 5.01
1795 1804 4.106197 CGATGCTGTCTTACTCAAGGTAC 58.894 47.826 0.00 0.00 32.22 3.34
1816 1826 0.603707 ACCCATCCATATCAAGCGCG 60.604 55.000 0.00 0.00 0.00 6.86
1817 1827 1.499056 CCATCCATATCAAGCGCGC 59.501 57.895 26.66 26.66 0.00 6.86
1818 1828 1.131218 CATCCATATCAAGCGCGCG 59.869 57.895 28.44 28.44 0.00 6.86
1819 1829 2.671177 ATCCATATCAAGCGCGCGC 61.671 57.895 45.10 45.10 42.33 6.86
1833 1843 1.226575 CGCGCACGGTCTCTTCATA 60.227 57.895 8.75 0.00 34.97 2.15
1852 1862 8.531146 TCTTCATAAGTGTCTCACATGTGATTA 58.469 33.333 28.00 21.67 34.41 1.75
1860 1870 5.023920 GTCTCACATGTGATTAATTGCACG 58.976 41.667 28.00 12.75 39.13 5.34
1861 1871 3.757184 TCACATGTGATTAATTGCACGC 58.243 40.909 24.56 0.00 37.83 5.34
1862 1872 3.190118 TCACATGTGATTAATTGCACGCA 59.810 39.130 24.56 0.00 37.83 5.24
1863 1873 3.301379 CACATGTGATTAATTGCACGCAC 59.699 43.478 21.64 0.00 37.83 5.34
1864 1874 2.239751 TGTGATTAATTGCACGCACG 57.760 45.000 0.00 0.00 37.83 5.34
1885 1895 6.090358 GCACGCTTATTACTCACTCAAAACTA 59.910 38.462 0.00 0.00 0.00 2.24
1886 1896 7.445836 CACGCTTATTACTCACTCAAAACTAC 58.554 38.462 0.00 0.00 0.00 2.73
1887 1897 7.328737 CACGCTTATTACTCACTCAAAACTACT 59.671 37.037 0.00 0.00 0.00 2.57
1894 1904 4.281182 ACTCACTCAAAACTACTGGTCGAT 59.719 41.667 0.00 0.00 0.00 3.59
1897 1907 6.931838 TCACTCAAAACTACTGGTCGATAAT 58.068 36.000 0.00 0.00 0.00 1.28
1905 1915 4.826183 ACTACTGGTCGATAATAGGTGTCC 59.174 45.833 0.00 0.00 0.00 4.02
1906 1916 3.638860 ACTGGTCGATAATAGGTGTCCA 58.361 45.455 0.00 0.00 0.00 4.02
1908 1918 4.142004 ACTGGTCGATAATAGGTGTCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1909 1919 3.770388 TGGTCGATAATAGGTGTCCAACA 59.230 43.478 0.00 0.00 0.00 3.33
1910 1920 4.407621 TGGTCGATAATAGGTGTCCAACAT 59.592 41.667 0.00 0.00 0.00 2.71
1935 1945 8.948853 TTTTATTTCGATTGTGATCAAGTGTC 57.051 30.769 0.00 0.00 36.97 3.67
1937 1947 3.676291 TCGATTGTGATCAAGTGTCCA 57.324 42.857 0.00 0.00 36.97 4.02
1985 1995 3.636153 ATTAGTTCCTCCCTTCACAGC 57.364 47.619 0.00 0.00 0.00 4.40
1996 2016 5.540337 CCTCCCTTCACAGCACTTAGATATA 59.460 44.000 0.00 0.00 0.00 0.86
1997 2017 6.212388 CCTCCCTTCACAGCACTTAGATATAT 59.788 42.308 0.00 0.00 0.00 0.86
2005 2025 3.777522 AGCACTTAGATATATCAGGGCCC 59.222 47.826 16.46 16.46 0.00 5.80
2010 2030 5.958987 ACTTAGATATATCAGGGCCCACTAC 59.041 44.000 27.56 6.63 0.00 2.73
2012 2032 3.341280 AGATATATCAGGGCCCACTACCT 59.659 47.826 27.56 7.32 37.66 3.08
2018 2038 2.249214 TCAGGGCCCACTACCTATAAGT 59.751 50.000 27.56 0.00 34.71 2.24
2025 2045 5.508657 GGCCCACTACCTATAAGTAAAGACG 60.509 48.000 0.00 0.00 0.00 4.18
2032 2083 8.906867 ACTACCTATAAGTAAAGACGCATACAA 58.093 33.333 0.00 0.00 0.00 2.41
2037 2088 5.591643 AAGTAAAGACGCATACAACACTG 57.408 39.130 0.00 0.00 0.00 3.66
2047 2098 4.024048 CGCATACAACACTGGAAACTCTTT 60.024 41.667 0.00 0.00 0.00 2.52
2054 2105 3.108144 CACTGGAAACTCTTTTGTTGCG 58.892 45.455 0.00 0.00 0.00 4.85
2107 2158 8.911247 ATAGAATAACCGCACTTCAAATTTTC 57.089 30.769 0.00 0.00 0.00 2.29
2110 2161 4.918810 AACCGCACTTCAAATTTTCTCT 57.081 36.364 0.00 0.00 0.00 3.10
2153 2204 2.431954 ATGCATCCTGAGGAAACTGG 57.568 50.000 4.76 0.00 44.43 4.00
2162 2213 6.884472 TCCTGAGGAAACTGGACAAATATA 57.116 37.500 0.00 0.00 44.43 0.86
2173 2224 7.136822 ACTGGACAAATATAATGCTCTACCA 57.863 36.000 0.00 0.00 0.00 3.25
2193 2244 4.766891 ACCAGAAAACGGTCATGATTGAAT 59.233 37.500 0.00 0.00 32.48 2.57
2202 2328 5.692204 ACGGTCATGATTGAATAGAACGATC 59.308 40.000 15.74 0.00 41.58 3.69
2203 2329 5.164148 CGGTCATGATTGAATAGAACGATCG 60.164 44.000 14.88 14.88 41.58 3.69
2225 2351 2.548480 GAGGGAGAAAACAACGGTGAAG 59.452 50.000 7.88 0.00 0.00 3.02
2231 2357 4.729595 AGAAAACAACGGTGAAGACAAAC 58.270 39.130 7.88 0.00 0.00 2.93
2244 2370 8.614994 GGTGAAGACAAACCGAAAATATTATG 57.385 34.615 0.00 0.00 0.00 1.90
2245 2371 8.455682 GGTGAAGACAAACCGAAAATATTATGA 58.544 33.333 0.00 0.00 0.00 2.15
2252 2378 9.621629 ACAAACCGAAAATATTATGATCTACCA 57.378 29.630 0.00 0.00 0.00 3.25
2267 2393 7.041635 TGATCTACCATAAATGCATTGTTGG 57.958 36.000 27.35 27.35 33.86 3.77
2268 2394 6.606796 TGATCTACCATAAATGCATTGTTGGT 59.393 34.615 32.56 32.56 40.19 3.67
2269 2395 6.849085 TCTACCATAAATGCATTGTTGGTT 57.151 33.333 33.99 23.70 38.80 3.67
2270 2396 6.629128 TCTACCATAAATGCATTGTTGGTTG 58.371 36.000 33.99 31.50 38.80 3.77
2275 4933 4.792528 AAATGCATTGTTGGTTGAAACG 57.207 36.364 13.82 0.00 32.47 3.60
2329 4987 0.682209 CATGCCCTTTGGTCTCTGGG 60.682 60.000 0.00 0.00 42.41 4.45
2337 4995 3.490348 CTTTGGTCTCTGGGTTGTCAAT 58.510 45.455 0.00 0.00 0.00 2.57
2339 4997 4.715534 TTGGTCTCTGGGTTGTCAATTA 57.284 40.909 0.00 0.00 0.00 1.40
2563 5222 9.044150 TGCAATTAATGTTTCCTTTTCTTCTTG 57.956 29.630 0.00 0.00 0.00 3.02
2651 5310 2.520020 TGGGGTCACGACGACTGT 60.520 61.111 0.00 0.00 44.70 3.55
2785 5444 4.396166 CGAGATGGAAGCCATACAAAACTT 59.604 41.667 0.00 0.00 45.26 2.66
2815 5474 1.042229 TATATCACCGGGGTGGAACG 58.958 55.000 17.31 0.00 45.43 3.95
2827 5486 2.423538 GGGTGGAACGAGATGAAATTGG 59.576 50.000 0.00 0.00 38.12 3.16
2954 5613 8.512138 GGTGAACTATACCATATTAATTGGCAC 58.488 37.037 13.42 11.39 37.81 5.01
2985 5644 0.035056 GCACACATACCTGAAGGCCT 60.035 55.000 0.00 0.00 39.32 5.19
2996 5655 2.431057 CCTGAAGGCCTACACGTTCTAT 59.569 50.000 5.16 0.00 35.86 1.98
3014 5673 6.508563 CGTTCTATGTATGTGTGCATGAACTC 60.509 42.308 5.18 1.65 36.94 3.01
3016 5675 6.044682 TCTATGTATGTGTGCATGAACTCTG 58.955 40.000 5.18 0.00 36.58 3.35
3033 5692 3.270027 CTCTGTGTGTGTTGTCCTTTCA 58.730 45.455 0.00 0.00 0.00 2.69
3040 5699 7.199766 TGTGTGTGTTGTCCTTTCAAATATTC 58.800 34.615 0.00 0.00 0.00 1.75
3125 5784 8.283291 GTGAGATCGATGATTGGGTTTTATTAC 58.717 37.037 0.54 0.00 0.00 1.89
3134 5793 5.871396 TTGGGTTTTATTACACCAAGCAA 57.129 34.783 0.00 0.00 36.37 3.91
3144 5803 9.727859 TTTATTACACCAAGCAAGACTACAATA 57.272 29.630 0.00 0.00 0.00 1.90
3262 5922 5.931146 GGAGTACTTCTGCAGAATCATATGG 59.069 44.000 28.57 17.27 34.56 2.74
3276 5936 8.906867 CAGAATCATATGGTTATTGGACAAACT 58.093 33.333 0.00 0.00 0.00 2.66
3283 5943 5.329399 TGGTTATTGGACAAACTAGGCAAT 58.671 37.500 0.00 0.00 0.00 3.56
3305 5965 3.575256 TCCGCCACTGAAGAAAAGTAGTA 59.425 43.478 0.00 0.00 0.00 1.82
3314 5974 4.020928 TGAAGAAAAGTAGTATGTGGCCGA 60.021 41.667 0.00 0.00 0.00 5.54
3328 5988 2.358737 CCGAACACCACTGGAGGC 60.359 66.667 0.71 0.00 0.00 4.70
3347 6007 3.976701 CTGCCCGGCAACCCACTAG 62.977 68.421 14.45 0.00 38.41 2.57
3374 6034 4.280174 TGGCTTCGTTGAGTAGAACTAACT 59.720 41.667 0.00 0.00 0.00 2.24
3378 6038 6.523893 GCTTCGTTGAGTAGAACTAACTAGTG 59.476 42.308 0.00 0.00 36.50 2.74
3379 6039 7.572724 GCTTCGTTGAGTAGAACTAACTAGTGA 60.573 40.741 0.00 0.00 36.50 3.41
3380 6040 7.734924 TCGTTGAGTAGAACTAACTAGTGAA 57.265 36.000 0.00 0.00 36.50 3.18
3381 6041 7.579726 TCGTTGAGTAGAACTAACTAGTGAAC 58.420 38.462 0.00 0.00 36.93 3.18
3382 6042 7.227314 TCGTTGAGTAGAACTAACTAGTGAACA 59.773 37.037 0.00 0.00 38.69 3.18
3383 6043 7.534578 CGTTGAGTAGAACTAACTAGTGAACAG 59.465 40.741 0.00 0.00 38.69 3.16
3384 6044 7.450124 TGAGTAGAACTAACTAGTGAACAGG 57.550 40.000 0.00 0.00 36.50 4.00
3385 6045 7.002879 TGAGTAGAACTAACTAGTGAACAGGT 58.997 38.462 0.00 0.00 36.50 4.00
3386 6046 7.504911 TGAGTAGAACTAACTAGTGAACAGGTT 59.495 37.037 0.00 0.00 36.50 3.50
3387 6047 7.659186 AGTAGAACTAACTAGTGAACAGGTTG 58.341 38.462 0.00 0.00 36.50 3.77
3388 6048 6.481434 AGAACTAACTAGTGAACAGGTTGT 57.519 37.500 0.00 0.00 36.50 3.32
3389 6049 6.514063 AGAACTAACTAGTGAACAGGTTGTC 58.486 40.000 0.00 0.00 36.50 3.18
3390 6050 6.324254 AGAACTAACTAGTGAACAGGTTGTCT 59.676 38.462 0.00 0.00 36.50 3.41
3391 6051 5.844004 ACTAACTAGTGAACAGGTTGTCTG 58.156 41.667 0.00 0.00 41.15 3.51
3392 6052 5.739358 ACTAACTAGTGAACAGGTTGTCTGC 60.739 44.000 0.00 0.00 40.02 4.26
3393 6053 7.867713 ACTAACTAGTGAACAGGTTGTCTGCT 61.868 42.308 0.00 0.00 40.02 4.24
3394 6054 9.554162 ACTAACTAGTGAACAGGTTGTCTGCTC 62.554 44.444 0.00 0.00 40.02 4.26
3401 6061 3.399440 CAGGTTGTCTGCTCTCTTTCT 57.601 47.619 0.00 0.00 36.60 2.52
3402 6062 3.324993 CAGGTTGTCTGCTCTCTTTCTC 58.675 50.000 0.00 0.00 36.60 2.87
3403 6063 2.029470 AGGTTGTCTGCTCTCTTTCTCG 60.029 50.000 0.00 0.00 0.00 4.04
3404 6064 1.724082 GTTGTCTGCTCTCTTTCTCGC 59.276 52.381 0.00 0.00 0.00 5.03
3405 6065 1.252175 TGTCTGCTCTCTTTCTCGCT 58.748 50.000 0.00 0.00 0.00 4.93
3406 6066 2.437413 TGTCTGCTCTCTTTCTCGCTA 58.563 47.619 0.00 0.00 0.00 4.26
3407 6067 2.162608 TGTCTGCTCTCTTTCTCGCTAC 59.837 50.000 0.00 0.00 0.00 3.58
3408 6068 2.422127 GTCTGCTCTCTTTCTCGCTACT 59.578 50.000 0.00 0.00 0.00 2.57
3409 6069 3.623960 GTCTGCTCTCTTTCTCGCTACTA 59.376 47.826 0.00 0.00 0.00 1.82
3410 6070 4.095185 GTCTGCTCTCTTTCTCGCTACTAA 59.905 45.833 0.00 0.00 0.00 2.24
3411 6071 4.334203 TCTGCTCTCTTTCTCGCTACTAAG 59.666 45.833 0.00 0.00 0.00 2.18
3412 6072 4.011023 TGCTCTCTTTCTCGCTACTAAGT 58.989 43.478 0.00 0.00 0.00 2.24
3413 6073 4.142578 TGCTCTCTTTCTCGCTACTAAGTG 60.143 45.833 0.00 0.00 34.35 3.16
3414 6074 4.142556 GCTCTCTTTCTCGCTACTAAGTGT 60.143 45.833 0.00 0.00 34.68 3.55
3415 6075 5.064962 GCTCTCTTTCTCGCTACTAAGTGTA 59.935 44.000 0.00 0.00 34.68 2.90
3416 6076 6.238538 GCTCTCTTTCTCGCTACTAAGTGTAT 60.239 42.308 0.00 0.00 34.68 2.29
3417 6077 7.041916 GCTCTCTTTCTCGCTACTAAGTGTATA 60.042 40.741 0.00 0.00 34.68 1.47
3418 6078 8.367943 TCTCTTTCTCGCTACTAAGTGTATAG 57.632 38.462 0.00 0.00 34.68 1.31
3419 6079 6.957150 TCTTTCTCGCTACTAAGTGTATAGC 58.043 40.000 0.00 0.00 38.36 2.97
3420 6080 5.686159 TTCTCGCTACTAAGTGTATAGCC 57.314 43.478 0.00 0.00 38.48 3.93
3421 6081 4.970711 TCTCGCTACTAAGTGTATAGCCT 58.029 43.478 0.00 0.00 38.48 4.58
3422 6082 5.374921 TCTCGCTACTAAGTGTATAGCCTT 58.625 41.667 0.00 0.00 38.48 4.35
3423 6083 5.238868 TCTCGCTACTAAGTGTATAGCCTTG 59.761 44.000 0.00 0.00 38.48 3.61
3424 6084 5.128205 TCGCTACTAAGTGTATAGCCTTGA 58.872 41.667 0.00 0.00 38.48 3.02
3425 6085 5.768662 TCGCTACTAAGTGTATAGCCTTGAT 59.231 40.000 0.00 0.00 38.48 2.57
3426 6086 6.938596 TCGCTACTAAGTGTATAGCCTTGATA 59.061 38.462 0.00 0.00 38.48 2.15
3427 6087 7.119407 TCGCTACTAAGTGTATAGCCTTGATAG 59.881 40.741 0.00 0.00 38.48 2.08
3428 6088 7.094720 CGCTACTAAGTGTATAGCCTTGATAGT 60.095 40.741 0.00 0.00 38.48 2.12
3429 6089 8.578151 GCTACTAAGTGTATAGCCTTGATAGTT 58.422 37.037 0.00 0.00 36.18 2.24
3430 6090 9.900710 CTACTAAGTGTATAGCCTTGATAGTTG 57.099 37.037 0.00 0.00 0.00 3.16
3431 6091 8.307582 ACTAAGTGTATAGCCTTGATAGTTGT 57.692 34.615 0.00 0.00 0.00 3.32
3432 6092 9.417561 ACTAAGTGTATAGCCTTGATAGTTGTA 57.582 33.333 0.00 0.00 0.00 2.41
3433 6093 9.680315 CTAAGTGTATAGCCTTGATAGTTGTAC 57.320 37.037 0.00 0.00 0.00 2.90
3434 6094 7.655521 AGTGTATAGCCTTGATAGTTGTACA 57.344 36.000 0.00 0.00 0.00 2.90
3435 6095 7.717568 AGTGTATAGCCTTGATAGTTGTACAG 58.282 38.462 0.00 0.00 0.00 2.74
3436 6096 7.560262 AGTGTATAGCCTTGATAGTTGTACAGA 59.440 37.037 0.00 0.00 0.00 3.41
3444 6104 9.556030 GCCTTGATAGTTGTACAGAAAAATAAC 57.444 33.333 0.00 0.00 0.00 1.89
3533 6193 3.365969 CGGTGGAAGTGTTTTCTTATGCC 60.366 47.826 0.00 0.00 0.00 4.40
3551 6211 1.362355 CAAAAACTGCACCGGGGTC 59.638 57.895 5.12 0.00 0.00 4.46
3601 6261 8.208224 TCCATAAGAATAGAAGACGGCAAATAA 58.792 33.333 0.00 0.00 0.00 1.40
3602 6262 8.283291 CCATAAGAATAGAAGACGGCAAATAAC 58.717 37.037 0.00 0.00 0.00 1.89
3603 6263 5.968387 AGAATAGAAGACGGCAAATAACG 57.032 39.130 0.00 0.00 0.00 3.18
3631 6291 5.117355 AGTCATGTGAAAAACTGCATCTG 57.883 39.130 0.00 0.00 0.00 2.90
3638 6298 8.592155 CATGTGAAAAACTGCATCTGAAATATG 58.408 33.333 0.00 0.00 0.00 1.78
3684 6346 8.374743 TGTAATGAGCTGATGTTATATAGGCAA 58.625 33.333 0.00 0.00 0.00 4.52
3706 6368 8.801913 GGCAATACGTCCGTAATTCTATATAAC 58.198 37.037 3.41 0.00 33.99 1.89
3741 6403 5.105837 CCGACTCTATAGCTAATAACCCACC 60.106 48.000 0.00 0.00 0.00 4.61
3786 6448 7.761409 TGCATCATCCAAGTTCTAATTGTAAC 58.239 34.615 0.00 0.00 0.00 2.50
3810 6472 7.151976 ACACAAATAATTGCCTTAACCAAGAC 58.848 34.615 0.00 0.00 40.34 3.01
3844 6506 5.593968 TGTATTGCATGATTTCATTGGAGC 58.406 37.500 0.00 0.00 33.61 4.70
3862 6524 5.276440 TGGAGCCCCAACACAAATATTTAT 58.724 37.500 0.00 0.00 40.09 1.40
3913 6575 0.249155 GCCATTTGCCATCATCACGG 60.249 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.151760 CCCCTCCCATTCCATCATGA 58.848 55.000 0.00 0.00 0.00 3.07
12 13 2.770048 CTCCGCTCCCCTCCCATT 60.770 66.667 0.00 0.00 0.00 3.16
19 21 4.154347 CAGTCTGCTCCGCTCCCC 62.154 72.222 0.00 0.00 0.00 4.81
22 24 1.339610 ACATATCAGTCTGCTCCGCTC 59.660 52.381 0.00 0.00 0.00 5.03
27 29 3.382865 TCCACTCACATATCAGTCTGCTC 59.617 47.826 0.00 0.00 0.00 4.26
31 33 2.360483 CGCTCCACTCACATATCAGTCT 59.640 50.000 0.00 0.00 0.00 3.24
37 39 1.485124 TGACCGCTCCACTCACATAT 58.515 50.000 0.00 0.00 0.00 1.78
38 40 1.067142 GTTGACCGCTCCACTCACATA 60.067 52.381 0.00 0.00 0.00 2.29
70 72 4.526262 CACTATCATCACCCCAAACCAAAA 59.474 41.667 0.00 0.00 0.00 2.44
80 82 1.141053 GACCCCACACTATCATCACCC 59.859 57.143 0.00 0.00 0.00 4.61
92 94 0.912487 GACCCCACATAGACCCCACA 60.912 60.000 0.00 0.00 0.00 4.17
95 97 0.326238 TCTGACCCCACATAGACCCC 60.326 60.000 0.00 0.00 0.00 4.95
96 98 0.831307 GTCTGACCCCACATAGACCC 59.169 60.000 0.00 0.00 34.84 4.46
100 102 0.833287 CCCAGTCTGACCCCACATAG 59.167 60.000 3.76 0.00 0.00 2.23
117 119 2.043953 GACCATCCCAGGTTGCCC 60.044 66.667 0.00 0.00 43.38 5.36
121 123 0.253044 CATGTCGACCATCCCAGGTT 59.747 55.000 14.12 0.00 43.38 3.50
123 125 1.146930 CCATGTCGACCATCCCAGG 59.853 63.158 14.12 0.53 0.00 4.45
125 127 1.337384 CCTCCATGTCGACCATCCCA 61.337 60.000 14.12 0.00 0.00 4.37
126 128 1.447643 CCTCCATGTCGACCATCCC 59.552 63.158 14.12 0.00 0.00 3.85
129 131 2.911143 GGCCTCCATGTCGACCAT 59.089 61.111 14.12 3.85 0.00 3.55
130 132 3.770040 CGGCCTCCATGTCGACCA 61.770 66.667 14.12 1.26 0.00 4.02
133 135 3.445518 GATGCGGCCTCCATGTCGA 62.446 63.158 10.14 0.00 0.00 4.20
142 146 4.148825 GACACTCGGATGCGGCCT 62.149 66.667 6.82 0.00 0.00 5.19
152 156 1.261938 TGGGGTGGTATGGACACTCG 61.262 60.000 0.00 0.00 40.23 4.18
154 158 2.579624 TATGGGGTGGTATGGACACT 57.420 50.000 0.00 0.00 38.83 3.55
155 159 2.039879 GGATATGGGGTGGTATGGACAC 59.960 54.545 0.00 0.00 38.10 3.67
156 160 2.344592 GGATATGGGGTGGTATGGACA 58.655 52.381 0.00 0.00 0.00 4.02
157 161 1.278127 CGGATATGGGGTGGTATGGAC 59.722 57.143 0.00 0.00 0.00 4.02
161 165 1.276622 GAGCGGATATGGGGTGGTAT 58.723 55.000 0.00 0.00 0.00 2.73
176 180 2.771089 ACCCAGTGCATATATTGAGCG 58.229 47.619 0.00 0.00 0.00 5.03
190 194 1.136828 TCTGGCACTGTAAACCCAGT 58.863 50.000 12.59 0.00 46.40 4.00
208 212 2.450476 AGCCCAAATGTCCAGATTGTC 58.550 47.619 0.00 0.00 0.00 3.18
220 224 0.618393 CCCCCATGACAAGCCCAAAT 60.618 55.000 0.00 0.00 0.00 2.32
228 232 3.055470 GCCGGATCCCCCATGACAA 62.055 63.158 5.05 0.00 34.14 3.18
229 233 3.488569 GCCGGATCCCCCATGACA 61.489 66.667 5.05 0.00 34.14 3.58
245 249 1.257055 TAGCAAAATGGCCACCCTGC 61.257 55.000 21.54 21.54 0.00 4.85
265 269 0.322456 ACAACCCGGTCACCATCATG 60.322 55.000 0.00 0.00 0.00 3.07
266 270 1.065709 GTACAACCCGGTCACCATCAT 60.066 52.381 0.00 0.00 0.00 2.45
281 285 1.200716 CTAAGACGTCTGGGCGTACAA 59.799 52.381 20.85 0.00 45.79 2.41
290 294 1.558233 AACCCTCCCTAAGACGTCTG 58.442 55.000 20.85 7.44 0.00 3.51
291 295 2.177734 GAAACCCTCCCTAAGACGTCT 58.822 52.381 13.58 13.58 0.00 4.18
305 309 1.266178 CAATTGGACCCCTGAAACCC 58.734 55.000 0.00 0.00 0.00 4.11
307 311 4.028993 TCTACAATTGGACCCCTGAAAC 57.971 45.455 10.83 0.00 0.00 2.78
311 315 2.301346 GCATCTACAATTGGACCCCTG 58.699 52.381 10.83 1.01 0.00 4.45
322 326 6.001449 AGCATAAAGTTAGGGCATCTACAA 57.999 37.500 0.00 0.00 0.00 2.41
324 328 6.292150 AGAAGCATAAAGTTAGGGCATCTAC 58.708 40.000 0.00 0.00 31.59 2.59
341 345 7.394359 AGGTACACAACATATGAAAAGAAGCAT 59.606 33.333 10.38 0.00 0.00 3.79
351 355 7.023171 ACCCTTTTAGGTACACAACATATGA 57.977 36.000 10.38 0.00 38.79 2.15
353 357 7.023171 TGACCCTTTTAGGTACACAACATAT 57.977 36.000 0.00 0.00 41.42 1.78
399 403 5.755375 GGTGAGATGACATACTTACATGGTG 59.245 44.000 0.00 0.00 0.00 4.17
401 405 5.917462 TGGTGAGATGACATACTTACATGG 58.083 41.667 0.00 0.00 0.00 3.66
412 416 9.059260 CATTCATAATTGTATGGTGAGATGACA 57.941 33.333 0.00 0.00 38.15 3.58
414 418 7.666804 CCCATTCATAATTGTATGGTGAGATGA 59.333 37.037 9.75 0.00 44.90 2.92
418 422 9.519191 TTATCCCATTCATAATTGTATGGTGAG 57.481 33.333 9.75 0.00 44.90 3.51
419 423 9.519191 CTTATCCCATTCATAATTGTATGGTGA 57.481 33.333 9.75 7.59 44.90 4.02
420 424 8.742777 CCTTATCCCATTCATAATTGTATGGTG 58.257 37.037 9.75 3.62 44.90 4.17
427 431 5.665916 GGGCCTTATCCCATTCATAATTG 57.334 43.478 0.84 0.00 45.82 2.32
445 449 0.180406 ATTGTATGTCGAGGTGGGCC 59.820 55.000 0.00 0.00 0.00 5.80
446 450 1.134521 TGATTGTATGTCGAGGTGGGC 60.135 52.381 0.00 0.00 0.00 5.36
460 464 3.196254 GGTCTTTTCCCATGCATGATTGT 59.804 43.478 28.31 0.00 0.00 2.71
464 468 2.562298 GTTGGTCTTTTCCCATGCATGA 59.438 45.455 28.31 6.08 0.00 3.07
473 477 4.142049 TGAATGTTGTGGTTGGTCTTTTCC 60.142 41.667 0.00 0.00 0.00 3.13
477 481 5.612725 AATTGAATGTTGTGGTTGGTCTT 57.387 34.783 0.00 0.00 0.00 3.01
483 487 5.875910 CCATGCATAATTGAATGTTGTGGTT 59.124 36.000 0.00 0.00 37.20 3.67
495 499 7.929245 TGGAGATCAATTTTCCATGCATAATTG 59.071 33.333 19.81 19.81 36.13 2.32
608 613 3.665745 AAATGAGTTCAACACATGGGC 57.334 42.857 0.77 0.00 29.98 5.36
610 615 8.298854 TGATAGAAAAATGAGTTCAACACATGG 58.701 33.333 0.77 0.00 29.98 3.66
616 621 9.696917 ATTGGTTGATAGAAAAATGAGTTCAAC 57.303 29.630 0.00 0.00 40.25 3.18
619 624 9.358872 GGAATTGGTTGATAGAAAAATGAGTTC 57.641 33.333 0.00 0.00 0.00 3.01
620 625 8.028938 CGGAATTGGTTGATAGAAAAATGAGTT 58.971 33.333 0.00 0.00 0.00 3.01
623 628 6.627065 GCCGGAATTGGTTGATAGAAAAATGA 60.627 38.462 5.05 0.00 0.00 2.57
626 631 4.524714 TGCCGGAATTGGTTGATAGAAAAA 59.475 37.500 5.05 0.00 0.00 1.94
627 632 4.082845 TGCCGGAATTGGTTGATAGAAAA 58.917 39.130 5.05 0.00 0.00 2.29
631 636 1.334869 GCTGCCGGAATTGGTTGATAG 59.665 52.381 5.05 0.00 0.00 2.08
650 655 2.513897 AGAATAACCCGCGGCTGC 60.514 61.111 22.85 7.70 37.91 5.25
653 658 0.388294 ACTAGAGAATAACCCGCGGC 59.612 55.000 22.85 4.52 0.00 6.53
655 660 4.267928 CAGAAAACTAGAGAATAACCCGCG 59.732 45.833 0.00 0.00 0.00 6.46
656 661 5.176592 ACAGAAAACTAGAGAATAACCCGC 58.823 41.667 0.00 0.00 0.00 6.13
657 662 6.092259 CCAACAGAAAACTAGAGAATAACCCG 59.908 42.308 0.00 0.00 0.00 5.28
678 684 3.749609 AGGTAAATGTACTTGCGACCAAC 59.250 43.478 0.00 0.00 0.00 3.77
774 780 8.419076 AAAATTGGTGACACAACAAAATCTAC 57.581 30.769 8.08 0.00 44.48 2.59
808 814 5.012046 TCAGATCAGCTCTTGGTTTCTACAA 59.988 40.000 0.00 0.00 29.16 2.41
857 863 3.602390 CAACTGGTTAGTGTTGGAACG 57.398 47.619 0.00 0.00 39.64 3.95
966 972 6.016192 GGGCTTAAGCTAGACAACTTTTCTTT 60.016 38.462 25.88 0.00 41.70 2.52
969 975 5.004448 AGGGCTTAAGCTAGACAACTTTTC 58.996 41.667 25.88 5.30 41.70 2.29
971 977 4.642466 AGGGCTTAAGCTAGACAACTTT 57.358 40.909 25.88 0.00 41.70 2.66
973 979 3.133183 GCTAGGGCTTAAGCTAGACAACT 59.867 47.826 25.88 14.44 41.70 3.16
974 980 3.459145 GCTAGGGCTTAAGCTAGACAAC 58.541 50.000 25.88 8.14 41.70 3.32
976 982 2.040178 GGCTAGGGCTTAAGCTAGACA 58.960 52.381 25.88 7.38 41.70 3.41
977 983 2.036604 CTGGCTAGGGCTTAAGCTAGAC 59.963 54.545 25.88 21.71 46.82 2.59
978 984 2.320781 CTGGCTAGGGCTTAAGCTAGA 58.679 52.381 25.88 10.82 46.82 2.43
979 985 1.270571 GCTGGCTAGGGCTTAAGCTAG 60.271 57.143 25.88 20.29 46.65 3.42
980 986 0.759346 GCTGGCTAGGGCTTAAGCTA 59.241 55.000 25.88 11.35 41.70 3.32
989 995 2.590007 GCGTCATGCTGGCTAGGG 60.590 66.667 0.00 0.00 41.73 3.53
1020 1026 2.922503 TCCTGCGGGCTCACTTCA 60.923 61.111 6.73 0.00 0.00 3.02
1056 1062 0.961019 GCATGTGGTTTTGGAGCTCA 59.039 50.000 17.19 0.00 34.23 4.26
1113 1119 1.599606 CCTCGGGGATGCCTAGATCG 61.600 65.000 0.00 0.00 33.58 3.69
1175 1181 1.019278 ATGTACCTTTGCGTCTGCCG 61.019 55.000 0.00 0.00 41.78 5.69
1215 1221 3.121030 AGTTCCATCACGCGCTGC 61.121 61.111 5.73 0.00 0.00 5.25
1317 1323 2.328099 GCACCAGCCGACAAGGAAG 61.328 63.158 0.00 0.00 45.00 3.46
1385 1394 1.731433 CCATTCGGGCATGCTGAAGG 61.731 60.000 23.38 22.82 0.00 3.46
1495 1504 0.249573 TTGAGGACGTCGTTGAACCC 60.250 55.000 12.67 0.00 0.00 4.11
1516 1525 2.771763 CTATCGGCGGCCATGGAGTC 62.772 65.000 18.40 9.21 0.00 3.36
1605 1614 3.202001 CCATTGCCGCCACCTACG 61.202 66.667 0.00 0.00 0.00 3.51
1632 1641 1.896220 AAGCCTTCGCAATCACTTGA 58.104 45.000 0.00 0.00 37.52 3.02
1644 1653 3.113386 GATGCGCGGGAAAGCCTTC 62.113 63.158 8.83 0.00 0.00 3.46
1671 1680 0.458543 CGTGAGGAAGGTCCATGACG 60.459 60.000 0.00 0.00 39.61 4.35
1795 1804 2.350522 GCGCTTGATATGGATGGGTAG 58.649 52.381 0.00 0.00 0.00 3.18
1816 1826 0.924090 CTTATGAAGAGACCGTGCGC 59.076 55.000 0.00 0.00 0.00 6.09
1817 1827 1.920574 CACTTATGAAGAGACCGTGCG 59.079 52.381 0.00 0.00 0.00 5.34
1818 1828 2.924290 GACACTTATGAAGAGACCGTGC 59.076 50.000 0.00 0.00 0.00 5.34
1819 1829 4.082733 TGAGACACTTATGAAGAGACCGTG 60.083 45.833 0.00 0.00 0.00 4.94
1833 1843 6.207221 TGCAATTAATCACATGTGAGACACTT 59.793 34.615 30.63 21.92 43.61 3.16
1852 1862 2.418628 AGTAATAAGCGTGCGTGCAATT 59.581 40.909 0.00 4.72 37.31 2.32
1860 1870 4.921470 TTTGAGTGAGTAATAAGCGTGC 57.079 40.909 0.00 0.00 0.00 5.34
1861 1871 6.467723 AGTTTTGAGTGAGTAATAAGCGTG 57.532 37.500 0.00 0.00 0.00 5.34
1862 1872 7.328737 CAGTAGTTTTGAGTGAGTAATAAGCGT 59.671 37.037 0.00 0.00 0.00 5.07
1863 1873 7.201444 CCAGTAGTTTTGAGTGAGTAATAAGCG 60.201 40.741 0.00 0.00 0.00 4.68
1864 1874 7.603024 ACCAGTAGTTTTGAGTGAGTAATAAGC 59.397 37.037 0.00 0.00 0.00 3.09
1885 1895 3.638860 TGGACACCTATTATCGACCAGT 58.361 45.455 0.00 0.00 0.00 4.00
1886 1896 4.142026 TGTTGGACACCTATTATCGACCAG 60.142 45.833 0.00 0.00 0.00 4.00
1887 1897 3.770388 TGTTGGACACCTATTATCGACCA 59.230 43.478 0.00 0.00 0.00 4.02
1894 1904 9.451002 TCGAAATAAAATGTTGGACACCTATTA 57.549 29.630 0.00 0.00 0.00 0.98
1897 1907 7.931578 ATCGAAATAAAATGTTGGACACCTA 57.068 32.000 0.00 0.00 0.00 3.08
1906 1916 9.912634 ACTTGATCACAATCGAAATAAAATGTT 57.087 25.926 0.00 0.00 35.37 2.71
1908 1918 9.345517 ACACTTGATCACAATCGAAATAAAATG 57.654 29.630 0.00 0.00 35.37 2.32
1909 1919 9.559958 GACACTTGATCACAATCGAAATAAAAT 57.440 29.630 0.00 0.00 35.37 1.82
1910 1920 8.020819 GGACACTTGATCACAATCGAAATAAAA 58.979 33.333 0.00 0.00 35.37 1.52
1963 1973 4.162320 TGCTGTGAAGGGAGGAACTAATAG 59.838 45.833 0.00 0.00 41.55 1.73
1964 1974 4.081087 GTGCTGTGAAGGGAGGAACTAATA 60.081 45.833 0.00 0.00 41.55 0.98
1965 1975 2.912956 TGCTGTGAAGGGAGGAACTAAT 59.087 45.455 0.00 0.00 41.55 1.73
1985 1995 4.780021 AGTGGGCCCTGATATATCTAAGTG 59.220 45.833 25.70 0.00 0.00 3.16
1996 2016 3.116317 ACTTATAGGTAGTGGGCCCTGAT 60.116 47.826 25.70 11.42 32.08 2.90
1997 2017 2.249214 ACTTATAGGTAGTGGGCCCTGA 59.751 50.000 25.70 4.82 32.08 3.86
2005 2025 8.347771 TGTATGCGTCTTTACTTATAGGTAGTG 58.652 37.037 0.00 0.00 0.00 2.74
2010 2030 7.705325 AGTGTTGTATGCGTCTTTACTTATAGG 59.295 37.037 0.00 0.00 0.00 2.57
2012 2032 7.490079 CCAGTGTTGTATGCGTCTTTACTTATA 59.510 37.037 0.00 0.00 0.00 0.98
2018 2038 4.260139 TCCAGTGTTGTATGCGTCTTTA 57.740 40.909 0.00 0.00 0.00 1.85
2025 2045 5.438761 AAAGAGTTTCCAGTGTTGTATGC 57.561 39.130 0.00 0.00 0.00 3.14
2032 2083 3.427503 CGCAACAAAAGAGTTTCCAGTGT 60.428 43.478 0.00 0.00 0.00 3.55
2037 2088 3.414549 TGTCGCAACAAAAGAGTTTCC 57.585 42.857 0.00 0.00 30.70 3.13
2047 2098 3.980646 ACTGCTAATTTGTCGCAACAA 57.019 38.095 0.00 0.00 43.58 2.83
2093 2144 4.978580 GTCCACAGAGAAAATTTGAAGTGC 59.021 41.667 0.00 0.00 0.00 4.40
2130 2181 4.706476 CCAGTTTCCTCAGGATGCATAAAA 59.294 41.667 0.00 0.00 34.76 1.52
2136 2187 1.003580 TGTCCAGTTTCCTCAGGATGC 59.996 52.381 0.00 0.00 34.76 3.91
2140 2191 7.469181 GCATTATATTTGTCCAGTTTCCTCAGG 60.469 40.741 0.00 0.00 0.00 3.86
2153 2204 9.937175 GTTTTCTGGTAGAGCATTATATTTGTC 57.063 33.333 0.00 0.00 0.00 3.18
2162 2213 3.244422 TGACCGTTTTCTGGTAGAGCATT 60.244 43.478 0.00 0.00 40.63 3.56
2173 2224 7.413000 CGTTCTATTCAATCATGACCGTTTTCT 60.413 37.037 0.00 0.00 34.61 2.52
2193 2244 2.723322 TTCTCCCTCCGATCGTTCTA 57.277 50.000 15.09 0.00 0.00 2.10
2202 2328 0.250166 ACCGTTGTTTTCTCCCTCCG 60.250 55.000 0.00 0.00 0.00 4.63
2203 2329 1.202722 TCACCGTTGTTTTCTCCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
2241 2367 8.795513 CCAACAATGCATTTATGGTAGATCATA 58.204 33.333 23.40 0.00 0.00 2.15
2242 2368 7.288389 ACCAACAATGCATTTATGGTAGATCAT 59.712 33.333 30.80 14.19 35.53 2.45
2243 2369 6.606796 ACCAACAATGCATTTATGGTAGATCA 59.393 34.615 30.80 0.00 35.53 2.92
2244 2370 7.042797 ACCAACAATGCATTTATGGTAGATC 57.957 36.000 30.80 0.00 35.53 2.75
2245 2371 7.123997 TCAACCAACAATGCATTTATGGTAGAT 59.876 33.333 31.48 20.53 35.98 1.98
2247 2373 6.629128 TCAACCAACAATGCATTTATGGTAG 58.371 36.000 31.48 15.02 35.98 3.18
2249 2375 5.480642 TCAACCAACAATGCATTTATGGT 57.519 34.783 28.29 28.29 37.61 3.55
2250 2376 6.601264 GTTTCAACCAACAATGCATTTATGG 58.399 36.000 27.30 27.30 0.00 2.74
2251 2377 6.145209 TCGTTTCAACCAACAATGCATTTATG 59.855 34.615 9.83 11.38 0.00 1.90
2252 2378 6.219473 TCGTTTCAACCAACAATGCATTTAT 58.781 32.000 9.83 0.00 0.00 1.40
2253 2379 5.592054 TCGTTTCAACCAACAATGCATTTA 58.408 33.333 9.83 0.00 0.00 1.40
2254 2380 4.437239 TCGTTTCAACCAACAATGCATTT 58.563 34.783 9.83 0.00 0.00 2.32
2255 2381 4.052159 TCGTTTCAACCAACAATGCATT 57.948 36.364 5.99 5.99 0.00 3.56
2256 2382 3.724508 TCGTTTCAACCAACAATGCAT 57.275 38.095 0.00 0.00 0.00 3.96
2257 2383 3.724508 ATCGTTTCAACCAACAATGCA 57.275 38.095 0.00 0.00 0.00 3.96
2258 2384 6.364706 TGAAATATCGTTTCAACCAACAATGC 59.635 34.615 1.06 0.00 35.69 3.56
2259 2385 7.380870 TGTGAAATATCGTTTCAACCAACAATG 59.619 33.333 4.93 0.00 39.76 2.82
2260 2386 7.429633 TGTGAAATATCGTTTCAACCAACAAT 58.570 30.769 4.93 0.00 39.76 2.71
2261 2387 6.796426 TGTGAAATATCGTTTCAACCAACAA 58.204 32.000 4.93 0.00 39.76 2.83
2262 2388 6.378710 TGTGAAATATCGTTTCAACCAACA 57.621 33.333 4.93 0.00 39.76 3.33
2329 4987 8.331730 ACCCATTACACTACTTAATTGACAAC 57.668 34.615 0.00 0.00 0.00 3.32
2337 4995 5.883673 GCATCCAACCCATTACACTACTTAA 59.116 40.000 0.00 0.00 0.00 1.85
2339 4997 4.263727 TGCATCCAACCCATTACACTACTT 60.264 41.667 0.00 0.00 0.00 2.24
2369 5027 5.099042 TCTTCCATGGGTTAGCTAGTTTC 57.901 43.478 13.02 0.00 0.00 2.78
2377 5035 9.224267 CAGTTAATATCATCTTCCATGGGTTAG 57.776 37.037 13.02 7.47 0.00 2.34
2378 5036 8.163408 CCAGTTAATATCATCTTCCATGGGTTA 58.837 37.037 13.02 0.00 0.00 2.85
2380 5038 6.103205 ACCAGTTAATATCATCTTCCATGGGT 59.897 38.462 13.02 0.00 0.00 4.51
2381 5039 6.546484 ACCAGTTAATATCATCTTCCATGGG 58.454 40.000 13.02 0.00 0.00 4.00
2539 5197 9.044150 TGCAAGAAGAAAAGGAAACATTAATTG 57.956 29.630 0.00 0.00 0.00 2.32
2651 5310 5.236655 TGCAACGTTGAAGTATTTTGACA 57.763 34.783 31.62 12.10 0.00 3.58
2785 5444 4.262851 CCCCGGTGATATACATCATGAACA 60.263 45.833 0.00 0.00 43.03 3.18
2815 5474 3.950395 CCTCTTCCACCCAATTTCATCTC 59.050 47.826 0.00 0.00 0.00 2.75
2827 5486 5.240403 GCATCAGAAAATATCCTCTTCCACC 59.760 44.000 0.00 0.00 0.00 4.61
2954 5613 6.478673 TCAGGTATGTGTGCAACTTATTATCG 59.521 38.462 0.00 0.00 38.04 2.92
2985 5644 5.061920 TGCACACATACATAGAACGTGTA 57.938 39.130 0.00 0.00 38.70 2.90
2996 5655 3.747529 CACAGAGTTCATGCACACATACA 59.252 43.478 0.00 0.00 33.67 2.29
3014 5673 4.433186 TTTGAAAGGACAACACACACAG 57.567 40.909 0.00 0.00 0.00 3.66
3016 5675 7.425606 AGAATATTTGAAAGGACAACACACAC 58.574 34.615 0.00 0.00 0.00 3.82
3125 5784 9.341899 GTAAAAATATTGTAGTCTTGCTTGGTG 57.658 33.333 0.00 0.00 0.00 4.17
3262 5922 5.448632 CGGATTGCCTAGTTTGTCCAATAAC 60.449 44.000 0.00 0.00 0.00 1.89
3283 5943 2.367567 ACTACTTTTCTTCAGTGGCGGA 59.632 45.455 0.00 0.00 0.00 5.54
3292 5952 4.501071 TCGGCCACATACTACTTTTCTTC 58.499 43.478 2.24 0.00 0.00 2.87
3314 5974 2.839098 CAGGCCTCCAGTGGTGTT 59.161 61.111 0.00 0.00 0.00 3.32
3343 6003 1.000955 CTCAACGAAGCCACCACTAGT 59.999 52.381 0.00 0.00 0.00 2.57
3344 6004 1.000955 ACTCAACGAAGCCACCACTAG 59.999 52.381 0.00 0.00 0.00 2.57
3345 6005 1.045407 ACTCAACGAAGCCACCACTA 58.955 50.000 0.00 0.00 0.00 2.74
3347 6007 1.000506 TCTACTCAACGAAGCCACCAC 59.999 52.381 0.00 0.00 0.00 4.16
3354 6014 7.804712 TCACTAGTTAGTTCTACTCAACGAAG 58.195 38.462 0.00 0.00 33.46 3.79
3379 6039 3.135530 AGAAAGAGAGCAGACAACCTGTT 59.864 43.478 0.00 0.00 44.71 3.16
3380 6040 2.703007 AGAAAGAGAGCAGACAACCTGT 59.297 45.455 0.00 0.00 44.71 4.00
3381 6041 3.324993 GAGAAAGAGAGCAGACAACCTG 58.675 50.000 0.00 0.00 45.67 4.00
3382 6042 2.029470 CGAGAAAGAGAGCAGACAACCT 60.029 50.000 0.00 0.00 0.00 3.50
3383 6043 2.333014 CGAGAAAGAGAGCAGACAACC 58.667 52.381 0.00 0.00 0.00 3.77
3384 6044 1.724082 GCGAGAAAGAGAGCAGACAAC 59.276 52.381 0.00 0.00 0.00 3.32
3385 6045 1.615883 AGCGAGAAAGAGAGCAGACAA 59.384 47.619 0.00 0.00 0.00 3.18
3386 6046 1.252175 AGCGAGAAAGAGAGCAGACA 58.748 50.000 0.00 0.00 0.00 3.41
3387 6047 2.422127 AGTAGCGAGAAAGAGAGCAGAC 59.578 50.000 0.00 0.00 0.00 3.51
3388 6048 2.717390 AGTAGCGAGAAAGAGAGCAGA 58.283 47.619 0.00 0.00 0.00 4.26
3389 6049 4.095782 ACTTAGTAGCGAGAAAGAGAGCAG 59.904 45.833 0.00 0.00 0.00 4.24
3390 6050 4.011023 ACTTAGTAGCGAGAAAGAGAGCA 58.989 43.478 0.00 0.00 0.00 4.26
3391 6051 4.142556 ACACTTAGTAGCGAGAAAGAGAGC 60.143 45.833 0.00 0.00 0.00 4.09
3392 6052 5.554822 ACACTTAGTAGCGAGAAAGAGAG 57.445 43.478 0.00 0.00 0.00 3.20
3393 6053 7.041916 GCTATACACTTAGTAGCGAGAAAGAGA 60.042 40.741 0.00 0.00 35.85 3.10
3394 6054 7.073265 GCTATACACTTAGTAGCGAGAAAGAG 58.927 42.308 0.00 0.00 35.85 2.85
3395 6055 6.017275 GGCTATACACTTAGTAGCGAGAAAGA 60.017 42.308 0.00 0.00 41.26 2.52
3396 6056 6.016943 AGGCTATACACTTAGTAGCGAGAAAG 60.017 42.308 0.00 0.00 41.26 2.62
3397 6057 5.826737 AGGCTATACACTTAGTAGCGAGAAA 59.173 40.000 0.00 0.00 41.26 2.52
3398 6058 5.374921 AGGCTATACACTTAGTAGCGAGAA 58.625 41.667 0.00 0.00 41.26 2.87
3399 6059 4.970711 AGGCTATACACTTAGTAGCGAGA 58.029 43.478 0.00 0.00 41.26 4.04
3400 6060 5.238868 TCAAGGCTATACACTTAGTAGCGAG 59.761 44.000 0.00 0.00 41.26 5.03
3401 6061 5.128205 TCAAGGCTATACACTTAGTAGCGA 58.872 41.667 0.00 0.00 41.26 4.93
3402 6062 5.434352 TCAAGGCTATACACTTAGTAGCG 57.566 43.478 0.00 0.00 41.26 4.26
3403 6063 8.113173 ACTATCAAGGCTATACACTTAGTAGC 57.887 38.462 0.00 0.00 39.98 3.58
3404 6064 9.900710 CAACTATCAAGGCTATACACTTAGTAG 57.099 37.037 0.00 0.00 35.85 2.57
3405 6065 9.417561 ACAACTATCAAGGCTATACACTTAGTA 57.582 33.333 0.00 0.00 37.06 1.82
3406 6066 8.307582 ACAACTATCAAGGCTATACACTTAGT 57.692 34.615 0.00 0.00 0.00 2.24
3407 6067 9.680315 GTACAACTATCAAGGCTATACACTTAG 57.320 37.037 0.00 0.00 0.00 2.18
3408 6068 9.192642 TGTACAACTATCAAGGCTATACACTTA 57.807 33.333 0.00 0.00 0.00 2.24
3409 6069 8.074613 TGTACAACTATCAAGGCTATACACTT 57.925 34.615 0.00 0.00 0.00 3.16
3410 6070 7.560262 TCTGTACAACTATCAAGGCTATACACT 59.440 37.037 0.00 0.00 0.00 3.55
3411 6071 7.713750 TCTGTACAACTATCAAGGCTATACAC 58.286 38.462 0.00 0.00 0.00 2.90
3412 6072 7.891498 TCTGTACAACTATCAAGGCTATACA 57.109 36.000 0.00 0.00 0.00 2.29
3413 6073 9.595823 TTTTCTGTACAACTATCAAGGCTATAC 57.404 33.333 0.00 0.00 0.00 1.47
3415 6075 9.686683 ATTTTTCTGTACAACTATCAAGGCTAT 57.313 29.630 0.00 0.00 0.00 2.97
3417 6077 9.515226 TTATTTTTCTGTACAACTATCAAGGCT 57.485 29.630 0.00 0.00 0.00 4.58
3418 6078 9.556030 GTTATTTTTCTGTACAACTATCAAGGC 57.444 33.333 0.00 0.00 0.00 4.35
3419 6079 9.755064 CGTTATTTTTCTGTACAACTATCAAGG 57.245 33.333 0.00 0.00 0.00 3.61
3422 6082 9.478768 TCACGTTATTTTTCTGTACAACTATCA 57.521 29.630 0.00 0.00 0.00 2.15
3426 6086 8.932791 CCTATCACGTTATTTTTCTGTACAACT 58.067 33.333 0.00 0.00 0.00 3.16
3427 6087 8.715088 ACCTATCACGTTATTTTTCTGTACAAC 58.285 33.333 0.00 0.00 0.00 3.32
3428 6088 8.836268 ACCTATCACGTTATTTTTCTGTACAA 57.164 30.769 0.00 0.00 0.00 2.41
3429 6089 9.926158 TTACCTATCACGTTATTTTTCTGTACA 57.074 29.630 0.00 0.00 0.00 2.90
3498 6158 6.996509 ACACTTCCACCGACTATTACTTTTA 58.003 36.000 0.00 0.00 0.00 1.52
3499 6159 5.861727 ACACTTCCACCGACTATTACTTTT 58.138 37.500 0.00 0.00 0.00 2.27
3500 6160 5.479124 ACACTTCCACCGACTATTACTTT 57.521 39.130 0.00 0.00 0.00 2.66
3501 6161 5.479124 AACACTTCCACCGACTATTACTT 57.521 39.130 0.00 0.00 0.00 2.24
3502 6162 5.479124 AAACACTTCCACCGACTATTACT 57.521 39.130 0.00 0.00 0.00 2.24
3503 6163 5.930569 AGAAAACACTTCCACCGACTATTAC 59.069 40.000 0.00 0.00 0.00 1.89
3504 6164 6.105397 AGAAAACACTTCCACCGACTATTA 57.895 37.500 0.00 0.00 0.00 0.98
3511 6171 3.365969 GGCATAAGAAAACACTTCCACCG 60.366 47.826 0.00 0.00 0.00 4.94
3516 6176 7.621102 CAGTTTTTGGCATAAGAAAACACTTC 58.379 34.615 20.99 1.52 42.65 3.01
3533 6193 1.362355 GACCCCGGTGCAGTTTTTG 59.638 57.895 0.00 0.00 0.00 2.44
3551 6211 6.565234 AGAGTTACACTTGGTGAATCTATCG 58.435 40.000 4.62 0.00 38.46 2.92
3562 6222 8.696374 TCTATTCTTATGGAGAGTTACACTTGG 58.304 37.037 0.00 0.00 35.37 3.61
3585 6245 4.097714 CGTACGTTATTTGCCGTCTTCTA 58.902 43.478 7.22 0.00 38.43 2.10
3601 6261 5.174398 CAGTTTTTCACATGACTACGTACGT 59.826 40.000 25.98 25.98 0.00 3.57
3602 6262 5.595993 CAGTTTTTCACATGACTACGTACG 58.404 41.667 15.01 15.01 0.00 3.67
3603 6263 5.050634 TGCAGTTTTTCACATGACTACGTAC 60.051 40.000 0.00 0.00 0.00 3.67
3604 6264 5.051153 TGCAGTTTTTCACATGACTACGTA 58.949 37.500 0.00 0.00 0.00 3.57
3631 6291 7.612668 ATCTAGCATGAGCATGACATATTTC 57.387 36.000 14.27 0.00 45.49 2.17
3638 6298 3.875727 ACACAATCTAGCATGAGCATGAC 59.124 43.478 14.27 5.85 45.49 3.06
3680 6342 8.801913 GTTATATAGAATTACGGACGTATTGCC 58.198 37.037 5.33 0.00 0.00 4.52
3706 6368 0.399454 TAGAGTCGGGGAGGGTATCG 59.601 60.000 0.00 0.00 0.00 2.92
3741 6403 3.438781 GCAGAGGGTATCTCGATCTACAG 59.561 52.174 6.80 0.00 46.82 2.74
3786 6448 6.307800 CGTCTTGGTTAAGGCAATTATTTGTG 59.692 38.462 0.00 0.00 38.44 3.33
3810 6472 9.533983 GAAATCATGCAATACAATAGTATGTCG 57.466 33.333 0.00 0.00 40.00 4.35
3844 6506 8.413229 CACTAAGGATAAATATTTGTGTTGGGG 58.587 37.037 11.05 0.41 0.00 4.96
3862 6524 6.633500 GCAATGTATTATTGCCACTAAGGA 57.367 37.500 12.32 0.00 46.21 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.