Multiple sequence alignment - TraesCS2D01G030400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G030400 chr2D 100.000 6365 0 0 1 6365 12403303 12409667 0.000000e+00 11755.0
1 TraesCS2D01G030400 chr2D 78.407 477 73 18 1145 1600 5583832 5584299 3.760000e-72 283.0
2 TraesCS2D01G030400 chr2D 88.000 200 21 3 504 701 29841378 29841576 3.840000e-57 233.0
3 TraesCS2D01G030400 chr2D 87.310 197 21 3 509 701 157447908 157447712 8.310000e-54 222.0
4 TraesCS2D01G030400 chr2D 86.598 194 24 2 510 701 7294745 7294938 5.000000e-51 213.0
5 TraesCS2D01G030400 chr2D 78.298 235 36 11 3169 3399 5585687 5585910 3.090000e-28 137.0
6 TraesCS2D01G030400 chr2B 88.993 2880 202 35 1695 4522 18799524 18802340 0.000000e+00 3456.0
7 TraesCS2D01G030400 chr2B 90.538 2251 137 27 2513 4724 18662294 18660081 0.000000e+00 2907.0
8 TraesCS2D01G030400 chr2B 91.468 879 57 8 4799 5659 18659985 18659107 0.000000e+00 1192.0
9 TraesCS2D01G030400 chr2B 84.543 1268 105 44 720 1968 18664730 18663535 0.000000e+00 1171.0
10 TraesCS2D01G030400 chr2B 89.369 903 52 17 728 1616 18798490 18799362 0.000000e+00 1096.0
11 TraesCS2D01G030400 chr2B 91.865 713 46 5 4799 5500 18802446 18803157 0.000000e+00 985.0
12 TraesCS2D01G030400 chr2B 89.134 543 33 15 717 1247 18770702 18771230 0.000000e+00 652.0
13 TraesCS2D01G030400 chr2B 88.950 543 34 15 717 1247 18706936 18707464 0.000000e+00 647.0
14 TraesCS2D01G030400 chr2B 88.713 505 51 6 1 503 18736222 18736722 4.220000e-171 612.0
15 TraesCS2D01G030400 chr2B 88.713 505 51 6 1 503 18769101 18769601 4.220000e-171 612.0
16 TraesCS2D01G030400 chr2B 88.492 504 53 5 1 503 18705336 18705835 7.060000e-169 604.0
17 TraesCS2D01G030400 chr2B 88.142 506 52 6 1 503 18796383 18796883 4.250000e-166 595.0
18 TraesCS2D01G030400 chr2B 89.044 429 22 14 831 1247 18717008 18717423 5.690000e-140 508.0
19 TraesCS2D01G030400 chr2B 89.305 374 16 4 5608 5976 18806303 18806657 1.260000e-121 448.0
20 TraesCS2D01G030400 chr2B 85.343 423 44 9 2023 2434 18663535 18663120 7.630000e-114 422.0
21 TraesCS2D01G030400 chr2B 79.502 522 96 6 2616 3130 5822533 5823050 1.690000e-95 361.0
22 TraesCS2D01G030400 chr2B 94.350 177 7 3 6190 6365 18806662 18806836 1.050000e-67 268.0
23 TraesCS2D01G030400 chr2B 89.950 199 17 3 1 197 18666296 18666099 2.950000e-63 254.0
24 TraesCS2D01G030400 chr2B 91.503 153 10 1 356 505 18665637 18665485 2.330000e-49 207.0
25 TraesCS2D01G030400 chr2B 91.473 129 9 2 5847 5975 756348859 756348985 6.560000e-40 176.0
26 TraesCS2D01G030400 chr2B 86.585 82 10 1 5981 6062 756349016 756349096 8.790000e-14 89.8
27 TraesCS2D01G030400 chr2A 93.330 1994 80 22 504 2472 12981259 12983224 0.000000e+00 2896.0
28 TraesCS2D01G030400 chr2A 96.336 1474 31 1 2505 3978 12983225 12984675 0.000000e+00 2401.0
29 TraesCS2D01G030400 chr2A 91.688 782 57 5 4714 5488 12985615 12986395 0.000000e+00 1077.0
30 TraesCS2D01G030400 chr2A 91.421 711 42 5 4015 4724 12984885 12985577 0.000000e+00 957.0
31 TraesCS2D01G030400 chr2A 89.570 604 46 9 5447 6040 12986409 12987005 0.000000e+00 750.0
32 TraesCS2D01G030400 chr2A 92.008 513 31 5 1 505 12980717 12981227 0.000000e+00 712.0
33 TraesCS2D01G030400 chr2A 80.230 521 91 5 2616 3130 4139316 4139830 1.290000e-101 381.0
34 TraesCS2D01G030400 chr2A 96.748 123 3 1 5795 5916 12987910 12988032 3.010000e-48 204.0
35 TraesCS2D01G030400 chr2A 74.684 237 28 21 3169 3398 4139916 4140127 6.840000e-10 76.8
36 TraesCS2D01G030400 chr2A 97.059 34 1 0 5711 5744 12987847 12987880 2.480000e-04 58.4
37 TraesCS2D01G030400 chrUn 100.000 393 0 0 2793 3185 479566529 479566137 0.000000e+00 726.0
38 TraesCS2D01G030400 chrUn 88.690 504 52 5 1 503 376097036 376096537 1.520000e-170 610.0
39 TraesCS2D01G030400 chr6A 83.853 545 81 2 2616 3153 221879258 221878714 4.400000e-141 512.0
40 TraesCS2D01G030400 chr6A 85.345 464 49 10 1146 1609 221880752 221880308 4.500000e-126 462.0
41 TraesCS2D01G030400 chr6A 88.674 362 40 1 2418 2778 251474686 251474325 2.110000e-119 440.0
42 TraesCS2D01G030400 chr6A 89.180 305 32 1 2418 2721 252021872 252022176 4.660000e-101 379.0
43 TraesCS2D01G030400 chr6A 86.935 199 25 1 504 701 614103050 614102852 8.310000e-54 222.0
44 TraesCS2D01G030400 chr6A 86.301 146 19 1 6218 6362 4035925 4036070 2.380000e-34 158.0
45 TraesCS2D01G030400 chr6A 89.873 79 2 1 1577 1649 252021566 252021644 5.250000e-16 97.1
46 TraesCS2D01G030400 chr6A 86.076 79 3 2 1577 1649 251474990 251474914 1.900000e-10 78.7
47 TraesCS2D01G030400 chr6B 83.394 548 81 3 2613 3153 299962309 299962853 3.430000e-137 499.0
48 TraesCS2D01G030400 chr6B 85.345 464 49 11 1146 1609 299957791 299958235 4.500000e-126 462.0
49 TraesCS2D01G030400 chr6B 87.569 362 42 2 2418 2778 272621900 272621541 3.550000e-112 416.0
50 TraesCS2D01G030400 chr6D 83.303 545 84 2 2616 3153 162296450 162295906 4.430000e-136 496.0
51 TraesCS2D01G030400 chr6D 86.551 461 44 9 1146 1606 162299041 162298599 5.730000e-135 492.0
52 TraesCS2D01G030400 chr6D 77.447 807 123 20 3267 4017 162295657 162294854 1.640000e-115 427.0
53 TraesCS2D01G030400 chr6D 89.147 129 12 2 5847 5975 12635031 12635157 6.610000e-35 159.0
54 TraesCS2D01G030400 chr6D 89.147 129 12 2 5847 5975 76005348 76005474 6.610000e-35 159.0
55 TraesCS2D01G030400 chr5D 89.589 365 37 1 2415 2778 79988851 79989215 4.500000e-126 462.0
56 TraesCS2D01G030400 chr5D 88.660 194 20 1 510 701 538171564 538171757 1.070000e-57 235.0
57 TraesCS2D01G030400 chr5D 91.139 79 1 1 1577 1649 79988548 79988626 1.130000e-17 102.0
58 TraesCS2D01G030400 chr3B 88.398 362 40 2 2418 2778 290615841 290616201 9.800000e-118 435.0
59 TraesCS2D01G030400 chr7A 88.122 362 42 1 2418 2778 397428281 397427920 4.560000e-116 429.0
60 TraesCS2D01G030400 chr7A 80.579 242 18 12 5847 6062 105249662 105249424 6.610000e-35 159.0
61 TraesCS2D01G030400 chr5A 89.447 199 19 2 505 701 651989198 651989000 3.810000e-62 250.0
62 TraesCS2D01G030400 chr7D 86.364 198 25 2 506 701 176959093 176959290 1.390000e-51 215.0
63 TraesCS2D01G030400 chr5B 86.598 194 24 2 510 701 153887575 153887382 5.000000e-51 213.0
64 TraesCS2D01G030400 chr3A 90.698 129 10 2 5847 5975 54456687 54456813 3.050000e-38 171.0
65 TraesCS2D01G030400 chr3A 86.585 82 10 1 5981 6062 54456844 54456924 8.790000e-14 89.8
66 TraesCS2D01G030400 chr1B 89.231 130 11 3 5847 5975 18381456 18381583 6.610000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G030400 chr2D 12403303 12409667 6364 False 11755.000000 11755 100.000000 1 6365 1 chr2D.!!$F2 6364
1 TraesCS2D01G030400 chr2D 5583832 5585910 2078 False 210.000000 283 78.352500 1145 3399 2 chr2D.!!$F4 2254
2 TraesCS2D01G030400 chr2B 18796383 18806836 10453 False 1141.333333 3456 90.337333 1 6365 6 chr2B.!!$F6 6364
3 TraesCS2D01G030400 chr2B 18659107 18666296 7189 True 1025.500000 2907 88.890833 1 5659 6 chr2B.!!$R1 5658
4 TraesCS2D01G030400 chr2B 18769101 18771230 2129 False 632.000000 652 88.923500 1 1247 2 chr2B.!!$F5 1246
5 TraesCS2D01G030400 chr2B 18705336 18707464 2128 False 625.500000 647 88.721000 1 1247 2 chr2B.!!$F4 1246
6 TraesCS2D01G030400 chr2B 18736222 18736722 500 False 612.000000 612 88.713000 1 503 1 chr2B.!!$F3 502
7 TraesCS2D01G030400 chr2B 5822533 5823050 517 False 361.000000 361 79.502000 2616 3130 1 chr2B.!!$F1 514
8 TraesCS2D01G030400 chr2A 12980717 12988032 7315 False 1131.925000 2896 93.520000 1 6040 8 chr2A.!!$F2 6039
9 TraesCS2D01G030400 chr2A 4139316 4140127 811 False 228.900000 381 77.457000 2616 3398 2 chr2A.!!$F1 782
10 TraesCS2D01G030400 chr6A 221878714 221880752 2038 True 487.000000 512 84.599000 1146 3153 2 chr6A.!!$R2 2007
11 TraesCS2D01G030400 chr6A 251474325 251474990 665 True 259.350000 440 87.375000 1577 2778 2 chr6A.!!$R3 1201
12 TraesCS2D01G030400 chr6A 252021566 252022176 610 False 238.050000 379 89.526500 1577 2721 2 chr6A.!!$F2 1144
13 TraesCS2D01G030400 chr6B 299962309 299962853 544 False 499.000000 499 83.394000 2613 3153 1 chr6B.!!$F2 540
14 TraesCS2D01G030400 chr6D 162294854 162299041 4187 True 471.666667 496 82.433667 1146 4017 3 chr6D.!!$R1 2871
15 TraesCS2D01G030400 chr5D 79988548 79989215 667 False 282.000000 462 90.364000 1577 2778 2 chr5D.!!$F2 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 2967 0.034337 AGCGGTGACATTAACCACGT 59.966 50.000 0.00 0.00 37.57 4.49 F
2309 7265 1.208052 GCTCTCAGACCAGCCATTACA 59.792 52.381 0.00 0.00 0.00 2.41 F
2698 7741 2.231235 GTGGAAAATCCTTCGGTGCATT 59.769 45.455 0.00 0.00 37.46 3.56 F
3997 9243 0.546122 TGGACAACCAACAGCTGACT 59.454 50.000 23.35 3.66 43.91 3.41 F
4807 10291 0.253044 CCGGCTTTCAGGATCCTTGA 59.747 55.000 13.00 10.61 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2484 7447 1.461897 GCGGCACAAGTTAATACACGT 59.538 47.619 0.00 0.0 0.00 4.49 R
3946 9192 0.466555 AACAAAGCCCGTAACTGCCA 60.467 50.000 0.00 0.0 0.00 4.92 R
4563 9996 0.101219 TCATGTCATCCTCGAGTGCG 59.899 55.000 12.31 0.0 39.35 5.34 R
5270 10763 0.107312 AGCATTGCTCATCTTCCGCT 60.107 50.000 5.03 0.0 30.62 5.52 R
6134 14747 0.034896 GGGAGTGAACGGCAAGAGAA 59.965 55.000 0.00 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 120 2.036992 TGCAAAATGAACGGCCAGATTT 59.963 40.909 2.24 0.00 0.00 2.17
241 251 3.411517 CACCGGCCTCCCCTCAAT 61.412 66.667 0.00 0.00 0.00 2.57
377 726 2.674420 CCCACCCCTAAAGTAGATCGA 58.326 52.381 0.00 0.00 0.00 3.59
401 751 2.239400 CATGCCTACCTAGGATCGACA 58.761 52.381 17.98 7.24 46.63 4.35
432 782 9.811655 CAATTCTAAATTCACGCGACATATATT 57.188 29.630 15.93 1.18 0.00 1.28
505 861 4.214545 TGGTAAAAACCAACATGTCGCTAG 59.785 41.667 0.00 0.00 36.74 3.42
605 2803 6.677781 ATCGTTGGATTCGTATTTGAACAT 57.322 33.333 0.00 0.00 0.00 2.71
651 2850 6.982724 TGTGACATGCATTGACATTTTGTTAA 59.017 30.769 0.00 0.00 32.72 2.01
712 2911 4.562963 GGGACTAATAAAGGCGGTATCTGG 60.563 50.000 0.00 0.00 31.76 3.86
713 2912 4.282703 GGACTAATAAAGGCGGTATCTGGA 59.717 45.833 0.00 0.00 31.76 3.86
714 2913 5.211174 ACTAATAAAGGCGGTATCTGGAC 57.789 43.478 0.00 0.00 0.00 4.02
715 2914 3.487120 AATAAAGGCGGTATCTGGACC 57.513 47.619 0.00 0.00 36.00 4.46
768 2967 0.034337 AGCGGTGACATTAACCACGT 59.966 50.000 0.00 0.00 37.57 4.49
787 2986 3.052082 CACCAACCTCTGCCGCTG 61.052 66.667 0.00 0.00 0.00 5.18
838 3037 2.813226 TATTGCCGTGCTGTCCACCC 62.813 60.000 0.00 0.00 41.53 4.61
896 3096 1.377987 ACACCACACCACACCACAC 60.378 57.895 0.00 0.00 0.00 3.82
897 3097 2.118404 CACCACACCACACCACACC 61.118 63.158 0.00 0.00 0.00 4.16
898 3098 2.273776 CCACACCACACCACACCA 59.726 61.111 0.00 0.00 0.00 4.17
899 3099 2.118404 CCACACCACACCACACCAC 61.118 63.158 0.00 0.00 0.00 4.16
902 3102 3.018193 ACCACACCACACCACCCA 61.018 61.111 0.00 0.00 0.00 4.51
1095 3311 3.148279 GTCGGCGTGGAGGAGGAT 61.148 66.667 6.85 0.00 0.00 3.24
1690 3988 8.826710 TGTTTGTCGATTATGGATAGAAACATC 58.173 33.333 0.00 0.00 0.00 3.06
1843 4685 7.573968 ACCTTTTTGGATGAATCATAGCTAC 57.426 36.000 0.00 0.00 39.71 3.58
2075 6997 3.306433 GGGCCATGAACACGGTTATTTTT 60.306 43.478 4.39 0.00 0.00 1.94
2309 7265 1.208052 GCTCTCAGACCAGCCATTACA 59.792 52.381 0.00 0.00 0.00 2.41
2511 7474 5.470777 TGTATTAACTTGTGCCGCTAACTTT 59.529 36.000 0.00 0.00 0.00 2.66
2698 7741 2.231235 GTGGAAAATCCTTCGGTGCATT 59.769 45.455 0.00 0.00 37.46 3.56
2791 7834 2.755469 CGGGGAATTGGCCACTGG 60.755 66.667 3.88 0.00 0.00 4.00
3331 8516 4.766891 TCCATCTGTTTGTTCTTCAATCCC 59.233 41.667 0.00 0.00 35.84 3.85
3552 8774 9.295825 TCAAAATCTTTATGGTGTACTGATGTT 57.704 29.630 0.00 0.00 0.00 2.71
3600 8825 6.907853 TCACACCAAAATTATGTCCATGAA 57.092 33.333 0.00 0.00 0.00 2.57
3611 8836 4.600692 ATGTCCATGAAATGCATCCATG 57.399 40.909 24.18 24.18 44.97 3.66
3946 9192 4.161565 TCATACCATCTACGCCAGAAAGTT 59.838 41.667 0.00 0.00 36.67 2.66
3971 9217 1.855978 GTTACGGGCTTTGTTGTTTGC 59.144 47.619 0.00 0.00 0.00 3.68
3997 9243 0.546122 TGGACAACCAACAGCTGACT 59.454 50.000 23.35 3.66 43.91 3.41
4007 9253 0.760567 ACAGCTGACTCACAGGACCA 60.761 55.000 23.35 0.00 45.82 4.02
4025 9444 7.400915 ACAGGACCAACTATTAGGTATGTGTTA 59.599 37.037 0.00 0.00 38.50 2.41
4027 9446 9.664777 AGGACCAACTATTAGGTATGTGTTATA 57.335 33.333 0.00 0.00 38.50 0.98
4116 9537 4.631131 CAGGCGTATCATGATACTTTCCA 58.369 43.478 32.66 6.18 41.04 3.53
4129 9550 5.945784 TGATACTTTCCATTTCCAGGTTCAG 59.054 40.000 0.00 0.00 0.00 3.02
4197 9618 4.319177 GTGAAACTAGTGTTGAGCAGGAT 58.681 43.478 0.00 0.00 36.39 3.24
4281 9702 2.614987 GCCTTCAGCAGAGAGTTGTGAT 60.615 50.000 0.00 0.00 42.97 3.06
4330 9751 4.908687 ACAACACGGCAGCTGCGA 62.909 61.111 31.19 0.00 43.26 5.10
4346 9767 2.668457 CTGCGATGGAGTGTGTTACTTC 59.332 50.000 0.00 0.00 40.53 3.01
4348 9769 3.508402 TGCGATGGAGTGTGTTACTTCTA 59.492 43.478 0.00 0.00 40.53 2.10
4399 9820 8.624367 TCTCATACCTGTAGCTACTTTAGATC 57.376 38.462 23.84 0.00 0.00 2.75
4403 9824 4.202030 ACCTGTAGCTACTTTAGATCGTGC 60.202 45.833 23.84 0.00 0.00 5.34
4423 9844 2.939103 GCTGTACCTAATCTGTTGCCAG 59.061 50.000 0.00 0.00 40.25 4.85
4452 9873 5.238650 GTGGGATTTGGAGGTCAATATAACG 59.761 44.000 0.00 0.00 34.98 3.18
4539 9960 9.186323 CATAATCAGTATACTAGTGTTGACTGC 57.814 37.037 14.51 0.00 37.48 4.40
4563 9996 4.096984 CCATTCTCAGCCACATCTTTAACC 59.903 45.833 0.00 0.00 0.00 2.85
4663 10099 3.418995 ACAGTAACTCGGCTGTCTTCTA 58.581 45.455 0.00 0.00 41.58 2.10
4715 10151 1.953559 TTCGATGATAGCTTGGCCAC 58.046 50.000 3.88 0.00 0.00 5.01
4744 10228 3.071023 TGATTCTGTCTTTCCCTTGTCGT 59.929 43.478 0.00 0.00 0.00 4.34
4785 10269 3.096852 TGAGAGTACCATGGACACGAAT 58.903 45.455 21.47 7.11 0.00 3.34
4786 10270 3.119137 TGAGAGTACCATGGACACGAATG 60.119 47.826 21.47 0.00 0.00 2.67
4807 10291 0.253044 CCGGCTTTCAGGATCCTTGA 59.747 55.000 13.00 10.61 0.00 3.02
4887 10374 2.287009 GGAAATATTCAGGAAAGCGCCG 60.287 50.000 2.29 0.00 0.00 6.46
4974 10461 0.961019 TGATGCACTCCTTTGCCAAC 59.039 50.000 0.00 0.00 42.25 3.77
5020 10507 3.503748 GGATGTTCAGGGTGACAAAGAAG 59.496 47.826 0.00 0.00 0.00 2.85
5081 10571 0.856641 AATGGTTTCGACGTCACGTG 59.143 50.000 8.08 9.94 41.37 4.49
5109 10599 5.855045 AGATCACGAGTGGAAACTTTACTT 58.145 37.500 3.19 0.00 0.00 2.24
5123 10613 8.182227 GGAAACTTTACTTGCCACAGATAATAC 58.818 37.037 0.00 0.00 0.00 1.89
5134 10627 4.033019 CACAGATAATACTCGCGTCGAAA 58.967 43.478 5.77 0.00 34.74 3.46
5186 10679 0.892755 TACGACCAAGAACTCGGCAT 59.107 50.000 0.00 0.00 34.07 4.40
5189 10682 0.955428 GACCAAGAACTCGGCATGCA 60.955 55.000 21.36 0.00 0.00 3.96
5202 10695 2.813474 ATGCAAGTTCGCGCGCTA 60.813 55.556 30.48 17.01 33.35 4.26
5313 10806 3.055530 TGAAGATCTCAAGACTCAAGGCC 60.056 47.826 0.00 0.00 0.00 5.19
5441 10939 3.761752 ACACCAAGCTAGTTGTTGTGTTT 59.238 39.130 7.20 0.00 40.09 2.83
5442 10940 4.219725 ACACCAAGCTAGTTGTTGTGTTTT 59.780 37.500 7.20 0.00 40.09 2.43
5464 10966 9.090692 GTTTTTACTAGTTCGTAATGCTATCCA 57.909 33.333 0.00 0.00 0.00 3.41
5478 11039 1.391933 TATCCAGCAGATCGCCGTGT 61.392 55.000 6.02 0.00 44.04 4.49
5515 11194 8.470805 TCTTTTGTGTATGTTGTTGGTATGTTT 58.529 29.630 0.00 0.00 0.00 2.83
5523 11202 3.222173 TGTTGGTATGTTTCAGGCAGT 57.778 42.857 0.00 0.00 0.00 4.40
5536 11218 6.265196 TGTTTCAGGCAGTTATCTGTGAAATT 59.735 34.615 16.48 0.00 42.69 1.82
5562 11244 2.841442 AAGCTGAACCTGGACAGTAC 57.159 50.000 19.83 9.66 36.62 2.73
5600 11294 3.332034 AGTCACCTTTGGTATTGCGTAC 58.668 45.455 0.00 0.00 32.11 3.67
5637 14244 3.008330 GCTGCTCTGTTCTGTGATTCAT 58.992 45.455 0.00 0.00 0.00 2.57
5638 14245 4.186926 GCTGCTCTGTTCTGTGATTCATA 58.813 43.478 0.00 0.00 0.00 2.15
5649 14256 6.041423 TCTGTGATTCATAGTCTTCAGCAA 57.959 37.500 9.86 0.00 0.00 3.91
5761 14368 1.064758 GTGGCATGGTTATGGAGGTGA 60.065 52.381 0.00 0.00 34.79 4.02
5790 14397 0.890542 TTGACATGTCCAGGCTGCAC 60.891 55.000 22.85 4.98 0.00 4.57
5805 14417 2.027100 GCTGCACTAGTACTTTCCCCTT 60.027 50.000 0.00 0.00 0.00 3.95
5955 14567 8.278408 GGCTTTTCATTTCTTTTCTTTCATGAC 58.722 33.333 0.00 0.00 0.00 3.06
5978 14590 8.147704 TGACAGATCAATTAAGTATTATCGGCA 58.852 33.333 0.00 0.00 0.00 5.69
5989 14602 1.448985 TTATCGGCACTTCCACAAGC 58.551 50.000 0.00 0.00 32.09 4.01
6018 14631 1.702957 CAGGGGTGAACTAAGTTGGGA 59.297 52.381 0.00 0.00 0.00 4.37
6040 14653 0.178995 TTGCAGCAATGAGGGTCACA 60.179 50.000 2.83 0.00 0.00 3.58
6041 14654 0.178995 TGCAGCAATGAGGGTCACAA 60.179 50.000 0.00 0.00 0.00 3.33
6042 14655 0.242017 GCAGCAATGAGGGTCACAAC 59.758 55.000 0.00 0.00 0.00 3.32
6043 14656 1.901591 CAGCAATGAGGGTCACAACT 58.098 50.000 0.00 0.00 0.00 3.16
6044 14657 2.875672 GCAGCAATGAGGGTCACAACTA 60.876 50.000 0.00 0.00 0.00 2.24
6045 14658 3.614092 CAGCAATGAGGGTCACAACTAT 58.386 45.455 0.00 0.00 0.00 2.12
6046 14659 4.012374 CAGCAATGAGGGTCACAACTATT 58.988 43.478 0.00 0.00 0.00 1.73
6047 14660 4.012374 AGCAATGAGGGTCACAACTATTG 58.988 43.478 0.00 0.00 0.00 1.90
6048 14661 3.129287 GCAATGAGGGTCACAACTATTGG 59.871 47.826 0.00 0.00 34.12 3.16
6049 14662 2.489938 TGAGGGTCACAACTATTGGC 57.510 50.000 0.00 0.00 34.12 4.52
6050 14663 1.702401 TGAGGGTCACAACTATTGGCA 59.298 47.619 0.00 0.00 34.12 4.92
6051 14664 2.290260 TGAGGGTCACAACTATTGGCAG 60.290 50.000 0.00 0.00 34.12 4.85
6052 14665 1.985159 AGGGTCACAACTATTGGCAGA 59.015 47.619 0.00 0.00 34.12 4.26
6053 14666 2.026822 AGGGTCACAACTATTGGCAGAG 60.027 50.000 0.00 0.00 34.12 3.35
6054 14667 2.027192 GGGTCACAACTATTGGCAGAGA 60.027 50.000 5.58 0.00 34.12 3.10
6055 14668 3.559171 GGGTCACAACTATTGGCAGAGAA 60.559 47.826 5.58 0.00 34.12 2.87
6056 14669 3.437049 GGTCACAACTATTGGCAGAGAAC 59.563 47.826 5.58 0.00 34.12 3.01
6057 14670 3.123621 GTCACAACTATTGGCAGAGAACG 59.876 47.826 5.58 0.00 34.12 3.95
6058 14671 3.006430 TCACAACTATTGGCAGAGAACGA 59.994 43.478 5.58 0.00 34.12 3.85
6059 14672 3.369147 CACAACTATTGGCAGAGAACGAG 59.631 47.826 5.58 0.00 34.12 4.18
6060 14673 2.301577 ACTATTGGCAGAGAACGAGC 57.698 50.000 5.58 0.00 0.00 5.03
6061 14674 1.827969 ACTATTGGCAGAGAACGAGCT 59.172 47.619 5.58 0.00 0.00 4.09
6062 14675 2.159170 ACTATTGGCAGAGAACGAGCTC 60.159 50.000 2.73 2.73 35.11 4.09
6063 14676 0.107945 ATTGGCAGAGAACGAGCTCC 60.108 55.000 8.47 0.00 35.49 4.70
6064 14677 1.471829 TTGGCAGAGAACGAGCTCCA 61.472 55.000 8.47 0.00 35.49 3.86
6065 14678 1.293498 GGCAGAGAACGAGCTCCAA 59.707 57.895 8.47 0.00 35.49 3.53
6066 14679 1.016653 GGCAGAGAACGAGCTCCAAC 61.017 60.000 8.47 0.00 35.49 3.77
6067 14680 0.319900 GCAGAGAACGAGCTCCAACA 60.320 55.000 8.47 0.00 35.49 3.33
6068 14681 1.707632 CAGAGAACGAGCTCCAACAG 58.292 55.000 8.47 0.00 35.49 3.16
6069 14682 0.605589 AGAGAACGAGCTCCAACAGG 59.394 55.000 8.47 0.00 35.49 4.00
6070 14683 0.390472 GAGAACGAGCTCCAACAGGG 60.390 60.000 8.47 0.00 38.37 4.45
6071 14684 1.122019 AGAACGAGCTCCAACAGGGT 61.122 55.000 8.47 0.00 38.11 4.34
6072 14685 0.250338 GAACGAGCTCCAACAGGGTT 60.250 55.000 8.47 4.30 38.11 4.11
6073 14686 0.535102 AACGAGCTCCAACAGGGTTG 60.535 55.000 8.47 2.19 38.11 3.77
6074 14687 1.071471 CGAGCTCCAACAGGGTTGT 59.929 57.895 8.47 0.00 39.87 3.32
6075 14688 0.951040 CGAGCTCCAACAGGGTTGTC 60.951 60.000 8.47 0.00 36.23 3.18
6076 14689 0.108585 GAGCTCCAACAGGGTTGTCA 59.891 55.000 0.87 0.00 36.23 3.58
6077 14690 0.179018 AGCTCCAACAGGGTTGTCAC 60.179 55.000 8.16 0.00 36.23 3.67
6078 14691 1.507141 GCTCCAACAGGGTTGTCACG 61.507 60.000 8.16 0.00 36.23 4.35
6079 14692 1.507141 CTCCAACAGGGTTGTCACGC 61.507 60.000 8.16 0.00 36.23 5.34
6080 14693 1.525995 CCAACAGGGTTGTCACGCT 60.526 57.895 8.16 0.00 46.91 5.07
6081 14694 0.250124 CCAACAGGGTTGTCACGCTA 60.250 55.000 8.16 0.00 44.20 4.26
6082 14695 1.148310 CAACAGGGTTGTCACGCTAG 58.852 55.000 1.05 0.00 44.20 3.42
6083 14696 0.602905 AACAGGGTTGTCACGCTAGC 60.603 55.000 4.06 4.06 44.20 3.42
6084 14697 1.741770 CAGGGTTGTCACGCTAGCC 60.742 63.158 9.66 0.00 44.20 3.93
6085 14698 2.214216 AGGGTTGTCACGCTAGCCA 61.214 57.895 9.66 0.00 44.19 4.75
6086 14699 1.741770 GGGTTGTCACGCTAGCCAG 60.742 63.158 9.66 1.49 39.65 4.85
6087 14700 2.391389 GGTTGTCACGCTAGCCAGC 61.391 63.158 9.66 3.04 44.90 4.85
6088 14701 1.374758 GTTGTCACGCTAGCCAGCT 60.375 57.895 9.66 0.00 46.26 4.24
6089 14702 1.079819 TTGTCACGCTAGCCAGCTC 60.080 57.895 9.66 0.00 46.26 4.09
6090 14703 1.815817 TTGTCACGCTAGCCAGCTCA 61.816 55.000 9.66 0.00 46.26 4.26
6091 14704 1.518133 GTCACGCTAGCCAGCTCAG 60.518 63.158 9.66 0.00 46.26 3.35
6092 14705 2.889503 CACGCTAGCCAGCTCAGC 60.890 66.667 9.66 3.44 46.26 4.26
6093 14706 4.154347 ACGCTAGCCAGCTCAGCC 62.154 66.667 9.66 0.00 46.26 4.85
6094 14707 4.152964 CGCTAGCCAGCTCAGCCA 62.153 66.667 9.66 0.00 46.26 4.75
6095 14708 2.513435 GCTAGCCAGCTCAGCCAC 60.513 66.667 2.29 0.00 44.93 5.01
6096 14709 2.202851 CTAGCCAGCTCAGCCACG 60.203 66.667 0.00 0.00 0.00 4.94
6097 14710 4.457496 TAGCCAGCTCAGCCACGC 62.457 66.667 0.00 0.00 0.00 5.34
6104 14717 4.020617 CTCAGCCACGCCCCTCAA 62.021 66.667 0.00 0.00 0.00 3.02
6105 14718 3.329889 TCAGCCACGCCCCTCAAT 61.330 61.111 0.00 0.00 0.00 2.57
6106 14719 2.361610 CAGCCACGCCCCTCAATT 60.362 61.111 0.00 0.00 0.00 2.32
6107 14720 1.978617 CAGCCACGCCCCTCAATTT 60.979 57.895 0.00 0.00 0.00 1.82
6108 14721 1.978617 AGCCACGCCCCTCAATTTG 60.979 57.895 0.00 0.00 0.00 2.32
6109 14722 2.573340 CCACGCCCCTCAATTTGC 59.427 61.111 0.00 0.00 0.00 3.68
6110 14723 2.573340 CACGCCCCTCAATTTGCC 59.427 61.111 0.00 0.00 0.00 4.52
6111 14724 1.978617 CACGCCCCTCAATTTGCCT 60.979 57.895 0.00 0.00 0.00 4.75
6112 14725 1.228862 ACGCCCCTCAATTTGCCTT 60.229 52.632 0.00 0.00 0.00 4.35
6113 14726 1.216178 CGCCCCTCAATTTGCCTTG 59.784 57.895 0.00 0.00 0.00 3.61
6114 14727 1.250154 CGCCCCTCAATTTGCCTTGA 61.250 55.000 0.00 0.00 34.14 3.02
6134 14747 0.388907 GACACAATGCAAAGCGCCAT 60.389 50.000 2.29 0.00 41.33 4.40
6136 14749 0.717224 CACAATGCAAAGCGCCATTC 59.283 50.000 2.29 0.00 41.33 2.67
6141 14754 0.241749 TGCAAAGCGCCATTCTCTTG 59.758 50.000 2.29 0.00 41.33 3.02
6169 14782 2.496470 ACTCCCTTCGTCATCAACCTAC 59.504 50.000 0.00 0.00 0.00 3.18
6170 14783 1.475280 TCCCTTCGTCATCAACCTACG 59.525 52.381 0.00 0.00 37.96 3.51
6187 14800 8.886719 TCAACCTACGTTATCACCGATATATAG 58.113 37.037 0.00 0.00 0.00 1.31
6210 14823 5.292101 AGCTTGCGTAGTAGAATTCATGTTC 59.708 40.000 8.44 0.00 0.00 3.18
6213 14826 7.042725 GCTTGCGTAGTAGAATTCATGTTCATA 60.043 37.037 8.44 0.00 0.00 2.15
6235 14848 2.672714 TGACTAGTCATCAACGTGTGC 58.327 47.619 21.74 0.00 34.14 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 120 4.227197 TGGGGCATTAGGTTGAAGAAAAA 58.773 39.130 0.00 0.00 0.00 1.94
377 726 0.471971 ATCCTAGGTAGGCATGCCGT 60.472 55.000 30.50 20.55 43.31 5.68
401 751 3.374058 CGCGTGAATTTAGAATTGGGTCT 59.626 43.478 0.00 0.00 0.00 3.85
505 861 8.871686 AATTTGACACAAAATACAAAGGAGAC 57.128 30.769 0.00 0.00 36.07 3.36
545 2743 6.202379 TGACATGCATTAACATTTTGTTGGTG 59.798 34.615 0.00 3.56 41.30 4.17
554 2752 7.675962 ATTTTTGCTGACATGCATTAACATT 57.324 28.000 0.00 0.00 42.96 2.71
615 2813 7.758980 GTCAATGCATGTCACAAAAATATACCA 59.241 33.333 0.00 0.00 0.00 3.25
668 2867 8.761689 AGTCCCCTTCGTGTTTAGTATAAAATA 58.238 33.333 0.00 0.00 0.00 1.40
688 2887 3.581770 AGATACCGCCTTTATTAGTCCCC 59.418 47.826 0.00 0.00 0.00 4.81
787 2986 0.600255 CGGGACAACACAGACCAGAC 60.600 60.000 0.00 0.00 0.00 3.51
902 3102 3.984193 GAAGTGGGATGGCTGCGCT 62.984 63.158 9.73 0.00 0.00 5.92
912 3112 1.918293 AGCGATGTGGGAAGTGGGA 60.918 57.895 0.00 0.00 0.00 4.37
913 3113 1.746615 CAGCGATGTGGGAAGTGGG 60.747 63.158 0.00 0.00 0.00 4.61
914 3114 2.401766 GCAGCGATGTGGGAAGTGG 61.402 63.158 1.22 0.00 0.00 4.00
915 3115 2.401766 GGCAGCGATGTGGGAAGTG 61.402 63.158 1.22 0.00 0.00 3.16
916 3116 2.045926 GGCAGCGATGTGGGAAGT 60.046 61.111 1.22 0.00 0.00 3.01
917 3117 1.817099 GAGGCAGCGATGTGGGAAG 60.817 63.158 1.22 0.00 0.00 3.46
918 3118 2.268920 GAGGCAGCGATGTGGGAA 59.731 61.111 1.22 0.00 0.00 3.97
1091 3307 2.835431 CCGCCTCGTCCTCATCCT 60.835 66.667 0.00 0.00 0.00 3.24
1095 3311 3.989838 ATCGTCCGCCTCGTCCTCA 62.990 63.158 0.00 0.00 0.00 3.86
1121 3340 2.202272 CGAACTCGTCGTCGTCCC 60.202 66.667 1.33 0.00 45.09 4.46
2075 6997 5.124617 GCATGTTCCCCAAAAGAAACAAAAA 59.875 36.000 0.00 0.00 0.00 1.94
2076 6998 4.637977 GCATGTTCCCCAAAAGAAACAAAA 59.362 37.500 0.00 0.00 0.00 2.44
2077 6999 4.195416 GCATGTTCCCCAAAAGAAACAAA 58.805 39.130 0.00 0.00 0.00 2.83
2079 7001 2.768527 TGCATGTTCCCCAAAAGAAACA 59.231 40.909 0.00 0.00 0.00 2.83
2080 7002 3.181466 ACTGCATGTTCCCCAAAAGAAAC 60.181 43.478 0.00 0.00 0.00 2.78
2484 7447 1.461897 GCGGCACAAGTTAATACACGT 59.538 47.619 0.00 0.00 0.00 4.49
2485 7448 1.730064 AGCGGCACAAGTTAATACACG 59.270 47.619 1.45 0.00 0.00 4.49
2496 7459 7.382759 CCTTTTAATTTAAAGTTAGCGGCACAA 59.617 33.333 14.09 0.00 34.11 3.33
2511 7474 7.185565 TGATCCACCCACATCCTTTTAATTTA 58.814 34.615 0.00 0.00 0.00 1.40
2791 7834 6.090088 CCGAATATCTTGAGAATCGACAATCC 59.910 42.308 4.56 0.00 38.61 3.01
3331 8516 1.202879 TCACAGTTTACTGGGCCCAAG 60.203 52.381 28.29 21.62 46.66 3.61
3600 8825 5.892119 AGAAGATTTCTGACATGGATGCATT 59.108 36.000 0.00 0.00 38.91 3.56
3611 8836 5.180304 AGCCTTTTTCGAGAAGATTTCTGAC 59.820 40.000 11.03 0.00 40.87 3.51
3736 8982 3.625649 AATGGACAGAGAAAGAGGAGC 57.374 47.619 0.00 0.00 0.00 4.70
3853 9099 5.121454 GTGAAGATGAACTCAGCTGGTTAAG 59.879 44.000 15.13 6.22 42.43 1.85
3922 9168 3.728076 TTCTGGCGTAGATGGTATGAC 57.272 47.619 0.00 0.00 34.80 3.06
3946 9192 0.466555 AACAAAGCCCGTAACTGCCA 60.467 50.000 0.00 0.00 0.00 4.92
3997 9243 5.962031 ACATACCTAATAGTTGGTCCTGTGA 59.038 40.000 0.00 0.00 37.74 3.58
4050 9469 6.101650 TGCTGATATTTCTGTGATCGGTAT 57.898 37.500 0.00 0.00 0.00 2.73
4054 9473 5.723492 TGTTGCTGATATTTCTGTGATCG 57.277 39.130 0.00 0.00 0.00 3.69
4116 9537 2.989571 ACCCTCTTCTGAACCTGGAAAT 59.010 45.455 0.00 0.00 0.00 2.17
4129 9550 6.723977 AGATCATCTATTCCACTACCCTCTTC 59.276 42.308 0.00 0.00 0.00 2.87
4197 9618 5.363868 CCTCTGACATAATTCTCCACCAGTA 59.636 44.000 0.00 0.00 0.00 2.74
4281 9702 1.069568 CGGTTGTCGTGCAAATTAGCA 60.070 47.619 0.00 0.00 43.35 3.49
4330 9751 5.877012 CAGCATTAGAAGTAACACACTCCAT 59.123 40.000 0.00 0.00 36.04 3.41
4362 9783 4.264172 ACAGGTATGAGAGACAAGTCCTCT 60.264 45.833 15.07 9.64 43.16 3.69
4399 9820 2.348666 GCAACAGATTAGGTACAGCACG 59.651 50.000 0.00 0.00 0.00 5.34
4423 9844 2.838202 TGACCTCCAAATCCCACTCTAC 59.162 50.000 0.00 0.00 0.00 2.59
4452 9873 4.594920 TGGTTCTCCTCATCCATATCTTCC 59.405 45.833 0.00 0.00 34.23 3.46
4539 9960 2.431954 AAGATGTGGCTGAGAATGGG 57.568 50.000 0.00 0.00 0.00 4.00
4563 9996 0.101219 TCATGTCATCCTCGAGTGCG 59.899 55.000 12.31 0.00 39.35 5.34
4663 10099 7.992608 TGTCACACTATAATTGCTCATACCAAT 59.007 33.333 0.00 0.00 34.56 3.16
4715 10151 6.336842 AGGGAAAGACAGAATCATTTGTTG 57.663 37.500 0.00 0.00 0.00 3.33
4744 10228 0.894835 TGCACAGCTACAGATTCCGA 59.105 50.000 0.00 0.00 0.00 4.55
4785 10269 2.272146 GATCCTGAAAGCCGGCCA 59.728 61.111 26.15 13.79 0.00 5.36
4786 10270 2.517166 GGATCCTGAAAGCCGGCC 60.517 66.667 26.15 8.84 0.00 6.13
4791 10275 3.379688 GGATTGTCAAGGATCCTGAAAGC 59.620 47.826 17.02 10.04 39.00 3.51
4807 10291 4.081862 CACAAATGGAAGATGCTGGATTGT 60.082 41.667 0.00 0.00 0.00 2.71
4887 10374 2.504681 CGAAAATGTGGCCGCTGC 60.505 61.111 18.96 0.00 0.00 5.25
5020 10507 4.796312 GCTCTTCATCTTCTGTTCGAGTAC 59.204 45.833 0.00 0.00 0.00 2.73
5081 10571 0.532573 TTCCACTCGTGATCTCAGGC 59.467 55.000 0.00 0.00 0.00 4.85
5094 10584 3.626930 TGTGGCAAGTAAAGTTTCCACT 58.373 40.909 18.87 5.36 43.10 4.00
5109 10599 1.407618 ACGCGAGTATTATCTGTGGCA 59.592 47.619 15.93 0.00 46.88 4.92
5123 10613 1.678269 CTCCAGCTTTTCGACGCGAG 61.678 60.000 15.93 6.55 37.14 5.03
5134 10627 1.914798 AGCAATCTTCTCCTCCAGCTT 59.085 47.619 0.00 0.00 0.00 3.74
5186 10679 3.478394 CTAGCGCGCGAACTTGCA 61.478 61.111 37.18 6.08 34.15 4.08
5189 10682 1.065928 ATAGCTAGCGCGCGAACTT 59.934 52.632 37.18 17.57 42.32 2.66
5270 10763 0.107312 AGCATTGCTCATCTTCCGCT 60.107 50.000 5.03 0.00 30.62 5.52
5313 10806 3.245797 TCTCTCAAGATCGTTTGCTTCG 58.754 45.455 0.00 0.00 0.00 3.79
5337 10830 1.772063 GCGCGGCGTTGGAAAGATAT 61.772 55.000 24.46 0.00 0.00 1.63
5424 10922 8.502105 ACTAGTAAAAACACAACAACTAGCTT 57.498 30.769 0.00 0.00 39.87 3.74
5464 10966 2.125912 GTCACACGGCGATCTGCT 60.126 61.111 16.62 0.00 45.43 4.24
5478 11039 0.878523 CACAAAAGACTCGCCCGTCA 60.879 55.000 3.26 0.00 36.38 4.35
5515 11194 4.943705 GGAATTTCACAGATAACTGCCTGA 59.056 41.667 0.00 0.00 46.95 3.86
5523 11202 6.092122 CAGCTTACACGGAATTTCACAGATAA 59.908 38.462 0.00 0.00 0.00 1.75
5536 11218 0.320374 CCAGGTTCAGCTTACACGGA 59.680 55.000 0.00 0.00 0.00 4.69
5562 11244 0.320771 ACTTCAGTAGCCCAAGCACG 60.321 55.000 0.00 0.00 43.56 5.34
5600 11294 3.790091 AGCAGCACACTACTATGACATG 58.210 45.455 0.00 0.00 0.00 3.21
5637 14244 2.364324 ACTGGTTCGTTGCTGAAGACTA 59.636 45.455 0.00 0.00 0.00 2.59
5638 14245 1.139058 ACTGGTTCGTTGCTGAAGACT 59.861 47.619 0.00 0.00 0.00 3.24
5761 14368 4.460382 CCTGGACATGTCAATTTGTAGCTT 59.540 41.667 26.47 0.00 0.00 3.74
5790 14397 6.361768 AGTGAAAGAAGGGGAAAGTACTAG 57.638 41.667 0.00 0.00 0.00 2.57
5805 14417 2.742053 GGCAGTAATCGCAAGTGAAAGA 59.258 45.455 0.00 0.00 39.48 2.52
5955 14567 8.539770 AGTGCCGATAATACTTAATTGATCTG 57.460 34.615 0.00 0.00 0.00 2.90
5978 14590 2.230660 GCAACCTTAGCTTGTGGAAGT 58.769 47.619 0.00 0.00 0.00 3.01
5989 14602 1.073923 AGTTCACCCCTGCAACCTTAG 59.926 52.381 0.00 0.00 0.00 2.18
6018 14631 2.028748 GTGACCCTCATTGCTGCAAAAT 60.029 45.455 20.06 0.14 0.00 1.82
6040 14653 2.234908 AGCTCGTTCTCTGCCAATAGTT 59.765 45.455 0.00 0.00 0.00 2.24
6041 14654 1.827969 AGCTCGTTCTCTGCCAATAGT 59.172 47.619 0.00 0.00 0.00 2.12
6042 14655 2.468831 GAGCTCGTTCTCTGCCAATAG 58.531 52.381 0.00 0.00 0.00 1.73
6043 14656 1.137086 GGAGCTCGTTCTCTGCCAATA 59.863 52.381 7.83 0.00 33.70 1.90
6044 14657 0.107945 GGAGCTCGTTCTCTGCCAAT 60.108 55.000 7.83 0.00 33.70 3.16
6045 14658 1.293498 GGAGCTCGTTCTCTGCCAA 59.707 57.895 7.83 0.00 33.70 4.52
6046 14659 1.471829 TTGGAGCTCGTTCTCTGCCA 61.472 55.000 7.83 0.00 33.70 4.92
6047 14660 1.016653 GTTGGAGCTCGTTCTCTGCC 61.017 60.000 7.83 0.00 33.70 4.85
6048 14661 0.319900 TGTTGGAGCTCGTTCTCTGC 60.320 55.000 7.83 0.00 33.70 4.26
6049 14662 1.671261 CCTGTTGGAGCTCGTTCTCTG 60.671 57.143 7.83 1.09 34.57 3.35
6050 14663 0.605589 CCTGTTGGAGCTCGTTCTCT 59.394 55.000 7.83 0.00 34.57 3.10
6051 14664 0.390472 CCCTGTTGGAGCTCGTTCTC 60.390 60.000 7.83 0.00 35.39 2.87
6052 14665 1.122019 ACCCTGTTGGAGCTCGTTCT 61.122 55.000 7.83 0.00 38.00 3.01
6053 14666 0.250338 AACCCTGTTGGAGCTCGTTC 60.250 55.000 7.83 0.69 38.00 3.95
6054 14667 0.535102 CAACCCTGTTGGAGCTCGTT 60.535 55.000 7.83 1.20 38.00 3.85
6055 14668 1.071471 CAACCCTGTTGGAGCTCGT 59.929 57.895 7.83 0.00 38.00 4.18
6056 14669 0.951040 GACAACCCTGTTGGAGCTCG 60.951 60.000 7.83 0.00 35.30 5.03
6057 14670 0.108585 TGACAACCCTGTTGGAGCTC 59.891 55.000 4.71 4.71 35.30 4.09
6058 14671 0.179018 GTGACAACCCTGTTGGAGCT 60.179 55.000 11.28 0.00 35.30 4.09
6059 14672 1.507141 CGTGACAACCCTGTTGGAGC 61.507 60.000 11.28 1.93 35.30 4.70
6060 14673 1.507141 GCGTGACAACCCTGTTGGAG 61.507 60.000 11.28 1.67 35.30 3.86
6061 14674 1.525077 GCGTGACAACCCTGTTGGA 60.525 57.895 11.28 0.00 35.30 3.53
6062 14675 0.250124 TAGCGTGACAACCCTGTTGG 60.250 55.000 11.28 0.00 35.30 3.77
6063 14676 1.148310 CTAGCGTGACAACCCTGTTG 58.852 55.000 5.46 5.46 35.30 3.33
6064 14677 0.602905 GCTAGCGTGACAACCCTGTT 60.603 55.000 0.00 0.00 35.30 3.16
6065 14678 1.004918 GCTAGCGTGACAACCCTGT 60.005 57.895 0.00 0.00 38.98 4.00
6066 14679 1.741770 GGCTAGCGTGACAACCCTG 60.742 63.158 9.00 0.00 0.00 4.45
6067 14680 2.172483 CTGGCTAGCGTGACAACCCT 62.172 60.000 9.00 0.00 0.00 4.34
6068 14681 1.741770 CTGGCTAGCGTGACAACCC 60.742 63.158 9.00 0.00 0.00 4.11
6069 14682 2.391389 GCTGGCTAGCGTGACAACC 61.391 63.158 6.22 0.00 40.67 3.77
6070 14683 3.169198 GCTGGCTAGCGTGACAAC 58.831 61.111 6.22 0.00 40.67 3.32
6079 14692 2.202851 CGTGGCTGAGCTGGCTAG 60.203 66.667 3.72 0.00 0.00 3.42
6080 14693 4.457496 GCGTGGCTGAGCTGGCTA 62.457 66.667 3.72 0.00 0.00 3.93
6087 14700 2.826777 AATTGAGGGGCGTGGCTGAG 62.827 60.000 0.00 0.00 0.00 3.35
6088 14701 2.424842 AAATTGAGGGGCGTGGCTGA 62.425 55.000 0.00 0.00 0.00 4.26
6089 14702 1.978617 AAATTGAGGGGCGTGGCTG 60.979 57.895 0.00 0.00 0.00 4.85
6090 14703 1.978617 CAAATTGAGGGGCGTGGCT 60.979 57.895 0.00 0.00 0.00 4.75
6091 14704 2.573340 CAAATTGAGGGGCGTGGC 59.427 61.111 0.00 0.00 0.00 5.01
6092 14705 2.573340 GCAAATTGAGGGGCGTGG 59.427 61.111 0.00 0.00 0.00 4.94
6093 14706 1.535204 AAGGCAAATTGAGGGGCGTG 61.535 55.000 0.00 0.00 0.00 5.34
6094 14707 1.228862 AAGGCAAATTGAGGGGCGT 60.229 52.632 0.00 0.00 0.00 5.68
6095 14708 1.216178 CAAGGCAAATTGAGGGGCG 59.784 57.895 0.00 0.00 31.55 6.13
6096 14709 2.669878 TCAAGGCAAATTGAGGGGC 58.330 52.632 0.00 0.00 34.31 5.80
6101 14714 4.873817 CATTGTGTCTCAAGGCAAATTGA 58.126 39.130 0.00 0.00 39.55 2.57
6109 14722 2.669364 GCTTTGCATTGTGTCTCAAGG 58.331 47.619 0.00 0.00 39.55 3.61
6110 14723 2.313234 CGCTTTGCATTGTGTCTCAAG 58.687 47.619 0.00 0.00 39.55 3.02
6111 14724 1.600164 GCGCTTTGCATTGTGTCTCAA 60.600 47.619 0.00 0.00 45.45 3.02
6112 14725 0.040157 GCGCTTTGCATTGTGTCTCA 60.040 50.000 0.00 0.00 45.45 3.27
6113 14726 2.716988 GCGCTTTGCATTGTGTCTC 58.283 52.632 0.00 0.00 45.45 3.36
6114 14727 4.950744 GCGCTTTGCATTGTGTCT 57.049 50.000 0.00 0.00 45.45 3.41
6134 14747 0.034896 GGGAGTGAACGGCAAGAGAA 59.965 55.000 0.00 0.00 0.00 2.87
6136 14749 0.035458 AAGGGAGTGAACGGCAAGAG 59.965 55.000 0.00 0.00 0.00 2.85
6141 14754 1.737008 GACGAAGGGAGTGAACGGC 60.737 63.158 0.00 0.00 0.00 5.68
6169 14782 5.171516 CGCAAGCTATATATCGGTGATAACG 59.828 44.000 0.00 0.00 0.00 3.18
6170 14783 6.034591 ACGCAAGCTATATATCGGTGATAAC 58.965 40.000 0.00 0.00 45.62 1.89
6187 14800 5.063438 TGAACATGAATTCTACTACGCAAGC 59.937 40.000 7.05 0.00 45.62 4.01
6235 14848 0.753262 AATCCTAGCCCGTGCAGTAG 59.247 55.000 0.00 0.00 41.13 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.