Multiple sequence alignment - TraesCS2D01G029600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G029600 chr2D 100.000 6341 0 0 1 6341 12263975 12257635 0.000000e+00 11710
1 TraesCS2D01G029600 chr2D 89.061 1225 96 16 4151 5354 12400732 12401939 0.000000e+00 1485
2 TraesCS2D01G029600 chr2D 84.509 1304 145 37 1464 2750 12393348 12394611 0.000000e+00 1236
3 TraesCS2D01G029600 chr2D 81.477 826 93 21 3060 3828 11863020 11862198 1.940000e-174 623
4 TraesCS2D01G029600 chr2D 83.128 569 70 13 3296 3839 12395062 12395629 4.420000e-136 496
5 TraesCS2D01G029600 chr2D 84.017 463 51 13 2791 3252 12394618 12395058 2.110000e-114 424
6 TraesCS2D01G029600 chr2D 92.353 170 12 1 5561 5729 181299354 181299185 2.280000e-59 241
7 TraesCS2D01G029600 chr2D 89.130 184 20 0 4124 4307 619277136 619277319 4.940000e-56 230
8 TraesCS2D01G029600 chr2D 89.375 160 13 3 3092 3249 400301887 400301730 1.390000e-46 198
9 TraesCS2D01G029600 chr2A 97.164 3667 74 7 2134 5799 12894207 12897844 0.000000e+00 6168
10 TraesCS2D01G029600 chr2A 97.187 1635 33 7 470 2095 12892567 12894197 0.000000e+00 2752
11 TraesCS2D01G029600 chr2A 89.258 1266 95 14 4112 5354 12977573 12978820 0.000000e+00 1546
12 TraesCS2D01G029600 chr2A 84.491 1296 152 33 1464 2750 12971175 12972430 0.000000e+00 1234
13 TraesCS2D01G029600 chr2A 84.038 1253 155 26 1453 2694 12433566 12432348 0.000000e+00 1164
14 TraesCS2D01G029600 chr2A 83.347 1231 161 23 1496 2716 12368057 12366861 0.000000e+00 1098
15 TraesCS2D01G029600 chr2A 83.949 1028 125 27 4361 5355 12364972 12363952 0.000000e+00 948
16 TraesCS2D01G029600 chr2A 83.624 1032 119 30 4355 5352 12427825 12426810 0.000000e+00 924
17 TraesCS2D01G029600 chr2A 79.297 1280 199 39 1108 2356 750266316 750267560 0.000000e+00 835
18 TraesCS2D01G029600 chr2A 82.593 810 97 17 3060 3828 12366199 12365393 0.000000e+00 675
19 TraesCS2D01G029600 chr2A 83.289 754 98 18 4609 5340 750280536 750281283 0.000000e+00 669
20 TraesCS2D01G029600 chr2A 83.304 569 68 11 3296 3839 12972883 12973449 3.410000e-137 499
21 TraesCS2D01G029600 chr2A 94.502 291 12 2 1 288 12892014 12892303 4.510000e-121 446
22 TraesCS2D01G029600 chr2A 84.665 463 51 12 2791 3252 12972436 12972879 1.620000e-120 444
23 TraesCS2D01G029600 chr2A 83.234 501 65 14 4112 4603 750279954 750280444 5.830000e-120 442
24 TraesCS2D01G029600 chr2A 79.964 554 95 13 3296 3834 750279343 750279895 1.660000e-105 394
25 TraesCS2D01G029600 chr2A 92.488 213 14 2 5875 6087 12909952 12910162 2.870000e-78 303
26 TraesCS2D01G029600 chr2A 86.594 276 26 8 4023 4295 12965700 12965967 1.730000e-75 294
27 TraesCS2D01G029600 chr2A 85.000 260 27 7 3055 3305 12431672 12431416 2.930000e-63 254
28 TraesCS2D01G029600 chr2A 93.662 142 9 0 3111 3252 750279049 750279190 4.980000e-51 213
29 TraesCS2D01G029600 chr2A 89.222 167 5 2 290 456 12892359 12892512 5.020000e-46 196
30 TraesCS2D01G029600 chr2A 88.750 160 14 3 3092 3249 537460155 537459998 6.490000e-45 193
31 TraesCS2D01G029600 chrUn 85.892 1127 136 17 1620 2740 387128619 387129728 0.000000e+00 1179
32 TraesCS2D01G029600 chrUn 86.275 1071 126 17 1702 2764 330380829 330381886 0.000000e+00 1144
33 TraesCS2D01G029600 chrUn 88.310 787 50 14 4581 5354 438497327 438496570 0.000000e+00 905
34 TraesCS2D01G029600 chrUn 84.787 493 68 3 3354 3839 464195219 464194727 7.390000e-134 488
35 TraesCS2D01G029600 chrUn 88.119 202 16 3 2792 2993 387129748 387129941 3.820000e-57 233
36 TraesCS2D01G029600 chr2B 83.397 1313 161 36 1464 2764 18678630 18677363 0.000000e+00 1164
37 TraesCS2D01G029600 chr2B 83.699 1276 163 28 1453 2716 18310712 18309470 0.000000e+00 1162
38 TraesCS2D01G029600 chr2B 86.368 1071 125 17 1702 2764 18761628 18762685 0.000000e+00 1149
39 TraesCS2D01G029600 chr2B 86.275 1071 126 17 1702 2764 18728951 18730008 0.000000e+00 1144
40 TraesCS2D01G029600 chr2B 87.838 962 87 13 4112 5051 18703018 18703971 0.000000e+00 1101
41 TraesCS2D01G029600 chr2B 87.630 962 89 13 4112 5051 18766783 18767736 0.000000e+00 1090
42 TraesCS2D01G029600 chr2B 87.422 962 91 11 4111 5051 18733906 18734858 0.000000e+00 1079
43 TraesCS2D01G029600 chr2B 87.987 899 78 13 4174 5051 18794096 18794985 0.000000e+00 1035
44 TraesCS2D01G029600 chr2B 83.957 1016 120 32 4361 5354 18307529 18306535 0.000000e+00 933
45 TraesCS2D01G029600 chr2B 88.595 719 58 6 4355 5051 18672622 18671906 0.000000e+00 852
46 TraesCS2D01G029600 chr2B 86.891 595 65 10 2175 2764 18737547 18738133 0.000000e+00 654
47 TraesCS2D01G029600 chr2B 81.290 775 118 15 4598 5350 757387924 757388693 2.530000e-168 603
48 TraesCS2D01G029600 chr2B 80.000 765 100 27 3110 3825 757212893 757213653 3.390000e-142 516
49 TraesCS2D01G029600 chr2B 84.940 498 60 9 3355 3839 18676856 18676361 2.050000e-134 490
50 TraesCS2D01G029600 chr2B 82.923 568 72 11 3296 3839 18699558 18700124 7.390000e-134 488
51 TraesCS2D01G029600 chr2B 82.218 568 76 11 3296 3839 18730444 18731010 3.460000e-127 466
52 TraesCS2D01G029600 chr2B 82.218 568 76 11 3296 3839 18790544 18791110 3.460000e-127 466
53 TraesCS2D01G029600 chr2B 95.926 270 10 1 5086 5354 18671900 18671631 2.710000e-118 436
54 TraesCS2D01G029600 chr2B 82.979 470 57 14 2791 3258 18677373 18676925 2.750000e-108 403
55 TraesCS2D01G029600 chr2B 82.759 464 57 16 2791 3252 18699112 18699554 5.960000e-105 392
56 TraesCS2D01G029600 chr2B 82.543 464 58 15 2791 3252 18729998 18730440 2.770000e-103 387
57 TraesCS2D01G029600 chr2B 86.275 255 22 7 3060 3305 18308799 18308549 1.360000e-66 265
58 TraesCS2D01G029600 chr2B 83.448 290 36 9 2791 3078 18762675 18762954 6.310000e-65 259
59 TraesCS2D01G029600 chr2B 91.477 176 13 2 5554 5727 389468359 389468184 2.280000e-59 241
60 TraesCS2D01G029600 chr2B 83.525 261 35 6 2791 3049 18738123 18738377 2.950000e-58 237
61 TraesCS2D01G029600 chr2B 87.302 126 16 0 1137 1262 757527568 757527693 1.840000e-30 145
62 TraesCS2D01G029600 chr3D 93.939 165 9 1 5564 5727 412074488 412074652 1.370000e-61 248
63 TraesCS2D01G029600 chr3D 90.164 183 16 2 5549 5730 550509610 550509429 2.950000e-58 237
64 TraesCS2D01G029600 chr6D 92.442 172 11 2 5558 5727 41542657 41542486 1.770000e-60 244
65 TraesCS2D01G029600 chr6D 90.374 187 15 2 5544 5729 72350869 72351053 6.350000e-60 243
66 TraesCS2D01G029600 chr3B 92.857 168 11 1 5561 5727 111133822 111133655 6.350000e-60 243
67 TraesCS2D01G029600 chr4D 91.477 176 12 3 5561 5733 23005398 23005223 8.220000e-59 239
68 TraesCS2D01G029600 chr4B 90.055 181 16 2 5556 5735 251669923 251669744 3.820000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G029600 chr2D 12257635 12263975 6340 True 11710.000000 11710 100.000000 1 6341 1 chr2D.!!$R2 6340
1 TraesCS2D01G029600 chr2D 12400732 12401939 1207 False 1485.000000 1485 89.061000 4151 5354 1 chr2D.!!$F1 1203
2 TraesCS2D01G029600 chr2D 12393348 12395629 2281 False 718.666667 1236 83.884667 1464 3839 3 chr2D.!!$F3 2375
3 TraesCS2D01G029600 chr2D 11862198 11863020 822 True 623.000000 623 81.477000 3060 3828 1 chr2D.!!$R1 768
4 TraesCS2D01G029600 chr2A 12892014 12897844 5830 False 2390.500000 6168 94.518750 1 5799 4 chr2A.!!$F5 5798
5 TraesCS2D01G029600 chr2A 12977573 12978820 1247 False 1546.000000 1546 89.258000 4112 5354 1 chr2A.!!$F3 1242
6 TraesCS2D01G029600 chr2A 12363952 12368057 4105 True 907.000000 1098 83.296333 1496 5355 3 chr2A.!!$R2 3859
7 TraesCS2D01G029600 chr2A 750266316 750267560 1244 False 835.000000 835 79.297000 1108 2356 1 chr2A.!!$F4 1248
8 TraesCS2D01G029600 chr2A 12426810 12433566 6756 True 780.666667 1164 84.220667 1453 5352 3 chr2A.!!$R3 3899
9 TraesCS2D01G029600 chr2A 12971175 12973449 2274 False 725.666667 1234 84.153333 1464 3839 3 chr2A.!!$F6 2375
10 TraesCS2D01G029600 chr2A 750279049 750281283 2234 False 429.500000 669 85.037250 3111 5340 4 chr2A.!!$F7 2229
11 TraesCS2D01G029600 chrUn 330380829 330381886 1057 False 1144.000000 1144 86.275000 1702 2764 1 chrUn.!!$F1 1062
12 TraesCS2D01G029600 chrUn 438496570 438497327 757 True 905.000000 905 88.310000 4581 5354 1 chrUn.!!$R1 773
13 TraesCS2D01G029600 chrUn 387128619 387129941 1322 False 706.000000 1179 87.005500 1620 2993 2 chrUn.!!$F2 1373
14 TraesCS2D01G029600 chr2B 18761628 18767736 6108 False 832.666667 1149 85.815333 1702 5051 3 chr2B.!!$F6 3349
15 TraesCS2D01G029600 chr2B 18306535 18310712 4177 True 786.666667 1162 84.643667 1453 5354 3 chr2B.!!$R2 3901
16 TraesCS2D01G029600 chr2B 18790544 18794985 4441 False 750.500000 1035 85.102500 3296 5051 2 chr2B.!!$F7 1755
17 TraesCS2D01G029600 chr2B 18671631 18678630 6999 True 669.000000 1164 87.167400 1464 5354 5 chr2B.!!$R3 3890
18 TraesCS2D01G029600 chr2B 18728951 18738377 9426 False 661.166667 1144 84.812333 1702 5051 6 chr2B.!!$F5 3349
19 TraesCS2D01G029600 chr2B 18699112 18703971 4859 False 660.333333 1101 84.506667 2791 5051 3 chr2B.!!$F4 2260
20 TraesCS2D01G029600 chr2B 757387924 757388693 769 False 603.000000 603 81.290000 4598 5350 1 chr2B.!!$F2 752
21 TraesCS2D01G029600 chr2B 757212893 757213653 760 False 516.000000 516 80.000000 3110 3825 1 chr2B.!!$F1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 631 0.245539 TGTCGCTAGCTACCAACCAC 59.754 55.000 16.05 0.00 0.00 4.16 F
704 803 0.378962 CACGTTTTTGGACCTCGCAA 59.621 50.000 0.00 0.00 0.00 4.85 F
2006 2161 2.034687 AGCACCCTGGCATGTGTC 59.965 61.111 15.86 9.92 34.94 3.67 F
2297 2464 4.141413 TGGACTTGGACATCCCTTATGATG 60.141 45.833 0.00 0.00 46.10 3.07 F
3479 4236 2.485426 CCGTGCATCTCAGTTCATGTTT 59.515 45.455 0.00 0.00 0.00 2.83 F
4853 12516 1.664321 CTGCAAAGGAGAGCCATGGC 61.664 60.000 30.12 30.12 42.33 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2161 0.249868 TCCAAGACTTCACTGCCACG 60.250 55.000 0.00 0.0 0.00 4.94 R
2297 2464 6.205658 GCATATATCTCTTCCAAAACAGGGTC 59.794 42.308 0.00 0.0 0.00 4.46 R
3192 3779 1.299976 GAGACGGAAACCCATGGCT 59.700 57.895 6.09 0.0 0.00 4.75 R
3687 7098 3.879295 CCGACCTGATTTTGCATGTAGAT 59.121 43.478 0.00 0.0 0.00 1.98 R
4875 12539 0.816018 ATGGTGCGGACGAACAACAA 60.816 50.000 5.08 0.0 36.99 2.83 R
6102 13910 0.032813 ATTTAGCCCATGCCACAGCT 60.033 50.000 0.00 0.0 40.80 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.735240 TGCTCAAATCAAAATGCACGAAC 59.265 39.130 0.00 0.00 0.00 3.95
47 48 5.235616 ACGTATATTTTACCGCAACATGGAG 59.764 40.000 0.00 0.00 0.00 3.86
241 245 7.094592 ACTCAAAAAGATTAGCTAGCCAGTTTC 60.095 37.037 12.13 1.91 0.00 2.78
245 249 4.877282 AGATTAGCTAGCCAGTTTCGATC 58.123 43.478 12.13 3.96 0.00 3.69
263 267 6.785633 TCGATCGAAACTAAACTACATTCG 57.214 37.500 16.99 0.00 42.97 3.34
354 412 7.491682 ACAACATTTGAAGTAGATTGCAAGTT 58.508 30.769 4.94 0.00 0.00 2.66
355 413 8.629158 ACAACATTTGAAGTAGATTGCAAGTTA 58.371 29.630 4.94 0.00 0.00 2.24
356 414 9.462174 CAACATTTGAAGTAGATTGCAAGTTAA 57.538 29.630 4.94 0.00 0.00 2.01
460 518 2.617250 TTTTGCTCGCTATGTGCTTG 57.383 45.000 0.00 0.00 40.11 4.01
461 519 0.804364 TTTGCTCGCTATGTGCTTGG 59.196 50.000 0.00 0.00 40.11 3.61
462 520 1.026182 TTGCTCGCTATGTGCTTGGG 61.026 55.000 0.00 0.00 40.11 4.12
463 521 2.828128 GCTCGCTATGTGCTTGGGC 61.828 63.158 0.00 0.00 40.11 5.36
464 522 2.124736 TCGCTATGTGCTTGGGCC 60.125 61.111 0.00 0.00 40.11 5.80
465 523 2.438254 CGCTATGTGCTTGGGCCA 60.438 61.111 0.00 0.00 40.11 5.36
466 524 2.764314 CGCTATGTGCTTGGGCCAC 61.764 63.158 5.23 0.00 40.11 5.01
467 525 1.379044 GCTATGTGCTTGGGCCACT 60.379 57.895 5.23 0.00 38.95 4.00
468 526 1.379642 GCTATGTGCTTGGGCCACTC 61.380 60.000 5.23 0.51 38.95 3.51
479 578 0.262285 GGGCCACTCTACTAGTCCCT 59.738 60.000 4.39 0.00 38.63 4.20
532 631 0.245539 TGTCGCTAGCTACCAACCAC 59.754 55.000 16.05 0.00 0.00 4.16
585 684 1.957177 GATAGACTGCTCCGATGACCA 59.043 52.381 0.00 0.00 0.00 4.02
623 722 8.446599 AAAGTATTTTGAAAACTTCGGAGAGA 57.553 30.769 0.00 0.00 31.62 3.10
629 728 2.393271 AAACTTCGGAGAGAGGCATG 57.607 50.000 0.00 0.00 38.43 4.06
704 803 0.378962 CACGTTTTTGGACCTCGCAA 59.621 50.000 0.00 0.00 0.00 4.85
738 845 3.004944 ACACGTTTTTATGGTTCCGCAAT 59.995 39.130 0.00 0.00 0.00 3.56
757 864 5.343058 CGCAATTTAACAATCCTCTGTGTTG 59.657 40.000 0.00 0.00 38.40 3.33
784 891 6.139048 TGGTCATCTTCGTAAATATCGTCA 57.861 37.500 0.00 0.00 0.00 4.35
788 895 7.007188 GGTCATCTTCGTAAATATCGTCATACG 59.993 40.741 0.00 0.00 44.19 3.06
794 901 5.622448 TCGTAAATATCGTCATACGCTTGTC 59.378 40.000 0.00 0.00 42.21 3.18
804 911 5.050490 GTCATACGCTTGTCACATATTCCT 58.950 41.667 0.00 0.00 0.00 3.36
848 955 9.914834 ATCTATACTTCTATAGAGCTTCCGAAT 57.085 33.333 2.02 0.00 42.71 3.34
849 956 9.742144 TCTATACTTCTATAGAGCTTCCGAATT 57.258 33.333 2.02 0.00 37.14 2.17
925 1032 3.454587 TTCCGTCGTGGTGCAGCTT 62.455 57.895 18.08 0.00 39.52 3.74
1067 1174 5.306678 TCAAAAATAAAGCATCCACAAGGGT 59.693 36.000 0.00 0.00 38.11 4.34
1106 1213 2.224402 ACAAAGAGACACAGAGAAGGCC 60.224 50.000 0.00 0.00 0.00 5.19
1328 1469 8.311109 ACTGTTTTGATGGAAACTTTTGTTACT 58.689 29.630 2.68 0.00 42.67 2.24
1597 1744 2.450476 AGATGTGGGTGAATGGAAAGC 58.550 47.619 0.00 0.00 0.00 3.51
1627 1774 3.223435 GACAACGCACGGTGAGCAC 62.223 63.158 16.03 0.00 36.12 4.40
1958 2113 2.125269 GGTTCGTGGGGTGATCCG 60.125 66.667 0.00 0.00 36.01 4.18
2006 2161 2.034687 AGCACCCTGGCATGTGTC 59.965 61.111 15.86 9.92 34.94 3.67
2130 2293 9.189156 CTTGTTTATTTCCAAGGAAGGATCATA 57.811 33.333 1.32 0.00 37.56 2.15
2297 2464 4.141413 TGGACTTGGACATCCCTTATGATG 60.141 45.833 0.00 0.00 46.10 3.07
2767 2945 5.065731 GCCTCTTCAATTGGTCAATACTGAG 59.934 44.000 5.42 3.75 30.14 3.35
2773 2951 6.401394 TCAATTGGTCAATACTGAGACAGAG 58.599 40.000 5.42 0.00 36.50 3.35
3192 3779 4.388485 CAATCCCGGATATTGATGACACA 58.612 43.478 19.28 0.00 36.61 3.72
3479 4236 2.485426 CCGTGCATCTCAGTTCATGTTT 59.515 45.455 0.00 0.00 0.00 2.83
3687 7098 5.470098 GGTTGAGAACAGAGTATTGAGCAAA 59.530 40.000 0.00 0.00 0.00 3.68
3889 7302 9.243105 CTCTTCATTATAGGAACCAAAGGAAAA 57.757 33.333 0.00 0.00 0.00 2.29
3896 7309 5.276461 AGGAACCAAAGGAAAATGTTGAC 57.724 39.130 0.00 0.00 0.00 3.18
4058 11271 5.304614 TGTGGAATGAGGCTCTATAGGTAAC 59.695 44.000 16.72 4.88 0.00 2.50
4252 11607 4.617253 TCAAAGACTCTCCCGAATTGAA 57.383 40.909 0.00 0.00 0.00 2.69
4337 11819 7.759489 ATCAACTAGCTAACAAATTGACCAA 57.241 32.000 0.00 0.00 0.00 3.67
4359 11885 7.989741 ACCAATAGATTCTTACATGAGACTTGG 59.010 37.037 0.00 4.09 0.00 3.61
4853 12516 1.664321 CTGCAAAGGAGAGCCATGGC 61.664 60.000 30.12 30.12 42.33 4.40
4875 12539 2.700371 TCCGTTGATGGAGATACAGCAT 59.300 45.455 0.00 0.00 36.56 3.79
4936 12600 2.629002 TTTCAGCCGAGCAGAAACC 58.371 52.632 10.74 0.00 38.68 3.27
4955 12619 4.586306 ACCGAACCTTTGGGATTATTCT 57.414 40.909 0.00 0.00 35.94 2.40
5191 12898 6.017275 GGATTTGGAGATGCAAGAACTATCTG 60.017 42.308 0.00 0.00 35.59 2.90
5571 13278 8.440771 AGTTTGCTGCTATAAATATACTCCCTT 58.559 33.333 0.00 0.00 0.00 3.95
5629 13336 8.440059 CAATAAGTGACTACATACGAAGCAAAA 58.560 33.333 0.00 0.00 0.00 2.44
5630 13337 8.718102 ATAAGTGACTACATACGAAGCAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
5631 13338 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
5632 13339 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
5633 13340 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
5634 13341 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
5635 13342 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
5636 13343 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
5637 13344 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
5638 13345 5.689819 ACATACGAAGCAAAATGAGTGAAC 58.310 37.500 0.00 0.00 0.00 3.18
5639 13346 5.470098 ACATACGAAGCAAAATGAGTGAACT 59.530 36.000 0.00 0.00 0.00 3.01
5640 13347 6.649141 ACATACGAAGCAAAATGAGTGAACTA 59.351 34.615 0.00 0.00 0.00 2.24
5641 13348 7.334421 ACATACGAAGCAAAATGAGTGAACTAT 59.666 33.333 0.00 0.00 0.00 2.12
5642 13349 8.817100 CATACGAAGCAAAATGAGTGAACTATA 58.183 33.333 0.00 0.00 0.00 1.31
5643 13350 7.061752 ACGAAGCAAAATGAGTGAACTATAC 57.938 36.000 0.00 0.00 0.00 1.47
5644 13351 6.874134 ACGAAGCAAAATGAGTGAACTATACT 59.126 34.615 0.00 0.00 0.00 2.12
5645 13352 7.063544 ACGAAGCAAAATGAGTGAACTATACTC 59.936 37.037 0.00 0.00 43.73 2.59
5646 13353 7.276658 CGAAGCAAAATGAGTGAACTATACTCT 59.723 37.037 0.00 0.00 43.79 3.24
5647 13354 9.587772 GAAGCAAAATGAGTGAACTATACTCTA 57.412 33.333 0.00 0.00 43.79 2.43
5648 13355 9.944376 AAGCAAAATGAGTGAACTATACTCTAA 57.056 29.630 0.00 0.00 43.79 2.10
5649 13356 9.944376 AGCAAAATGAGTGAACTATACTCTAAA 57.056 29.630 0.00 0.00 43.79 1.85
5668 13375 8.288208 ACTCTAAAATATGTCTACGTACATCCG 58.712 37.037 7.22 0.00 40.52 4.18
5696 13403 9.739276 ATGTTCTAGTCCATTTGAAATGTCTAA 57.261 29.630 15.93 4.89 0.00 2.10
5739 13446 0.533491 GGGAGTACATGTACACGCCA 59.467 55.000 32.02 0.00 38.48 5.69
5752 13459 1.413445 ACACGCCACTGTAACCTACAA 59.587 47.619 0.00 0.00 38.38 2.41
5807 13514 2.971997 GCGTGTGGCAATAGATCGA 58.028 52.632 0.00 0.00 42.87 3.59
5808 13515 1.502231 GCGTGTGGCAATAGATCGAT 58.498 50.000 0.00 0.00 42.87 3.59
5809 13516 1.457303 GCGTGTGGCAATAGATCGATC 59.543 52.381 17.91 17.91 42.87 3.69
5810 13517 2.864097 GCGTGTGGCAATAGATCGATCT 60.864 50.000 29.58 29.58 42.87 2.75
5811 13518 3.611766 GCGTGTGGCAATAGATCGATCTA 60.612 47.826 31.66 31.66 41.58 1.98
5812 13519 4.162072 CGTGTGGCAATAGATCGATCTAG 58.838 47.826 32.33 23.27 42.20 2.43
5813 13520 3.923461 GTGTGGCAATAGATCGATCTAGC 59.077 47.826 32.33 29.35 42.20 3.42
5814 13521 3.056536 TGTGGCAATAGATCGATCTAGCC 60.057 47.826 36.22 36.22 44.61 3.93
5815 13522 3.876274 GGCAATAGATCGATCTAGCCA 57.124 47.619 37.01 22.86 44.17 4.75
5816 13523 3.194329 TGGCAATAGATCGATCTAGCCAG 59.806 47.826 38.96 27.96 46.79 4.85
5817 13524 3.445450 GGCAATAGATCGATCTAGCCAGA 59.555 47.826 37.01 22.00 44.17 3.86
5818 13525 4.439974 GGCAATAGATCGATCTAGCCAGAG 60.440 50.000 37.01 24.56 44.17 3.35
5819 13526 4.157656 GCAATAGATCGATCTAGCCAGAGT 59.842 45.833 32.33 16.45 42.20 3.24
5820 13527 5.355630 GCAATAGATCGATCTAGCCAGAGTA 59.644 44.000 32.33 14.64 42.20 2.59
5821 13528 6.127869 GCAATAGATCGATCTAGCCAGAGTAA 60.128 42.308 32.33 13.98 42.20 2.24
5822 13529 7.471721 CAATAGATCGATCTAGCCAGAGTAAG 58.528 42.308 32.33 12.30 42.20 2.34
5823 13530 4.980573 AGATCGATCTAGCCAGAGTAAGT 58.019 43.478 26.27 0.00 34.85 2.24
5824 13531 5.381757 AGATCGATCTAGCCAGAGTAAGTT 58.618 41.667 26.27 0.00 34.85 2.66
5825 13532 5.472137 AGATCGATCTAGCCAGAGTAAGTTC 59.528 44.000 26.27 0.00 34.85 3.01
5826 13533 3.884091 TCGATCTAGCCAGAGTAAGTTCC 59.116 47.826 0.00 0.00 33.22 3.62
5827 13534 3.004944 CGATCTAGCCAGAGTAAGTTCCC 59.995 52.174 0.00 0.00 33.22 3.97
5828 13535 3.759815 TCTAGCCAGAGTAAGTTCCCT 57.240 47.619 0.00 0.00 0.00 4.20
5829 13536 3.366396 TCTAGCCAGAGTAAGTTCCCTG 58.634 50.000 0.00 0.00 0.00 4.45
5830 13537 2.031495 AGCCAGAGTAAGTTCCCTGT 57.969 50.000 0.00 0.00 0.00 4.00
5831 13538 2.339769 AGCCAGAGTAAGTTCCCTGTT 58.660 47.619 0.00 0.00 0.00 3.16
5832 13539 2.711547 AGCCAGAGTAAGTTCCCTGTTT 59.288 45.455 0.00 0.00 0.00 2.83
5833 13540 3.908103 AGCCAGAGTAAGTTCCCTGTTTA 59.092 43.478 0.00 0.00 0.00 2.01
5834 13541 4.536489 AGCCAGAGTAAGTTCCCTGTTTAT 59.464 41.667 0.00 0.00 0.00 1.40
5835 13542 5.014228 AGCCAGAGTAAGTTCCCTGTTTATT 59.986 40.000 0.00 0.00 0.00 1.40
5836 13543 5.354513 GCCAGAGTAAGTTCCCTGTTTATTC 59.645 44.000 0.00 0.00 0.00 1.75
5837 13544 5.880887 CCAGAGTAAGTTCCCTGTTTATTCC 59.119 44.000 0.00 0.00 0.00 3.01
5838 13545 5.880887 CAGAGTAAGTTCCCTGTTTATTCCC 59.119 44.000 0.00 0.00 0.00 3.97
5839 13546 5.791141 AGAGTAAGTTCCCTGTTTATTCCCT 59.209 40.000 0.00 0.00 0.00 4.20
5840 13547 6.274908 AGAGTAAGTTCCCTGTTTATTCCCTT 59.725 38.462 0.00 0.00 0.00 3.95
5841 13548 6.860034 AGTAAGTTCCCTGTTTATTCCCTTT 58.140 36.000 0.00 0.00 0.00 3.11
5842 13549 6.946583 AGTAAGTTCCCTGTTTATTCCCTTTC 59.053 38.462 0.00 0.00 0.00 2.62
5843 13550 5.600669 AGTTCCCTGTTTATTCCCTTTCT 57.399 39.130 0.00 0.00 0.00 2.52
5844 13551 5.965486 AGTTCCCTGTTTATTCCCTTTCTT 58.035 37.500 0.00 0.00 0.00 2.52
5845 13552 6.382087 AGTTCCCTGTTTATTCCCTTTCTTT 58.618 36.000 0.00 0.00 0.00 2.52
5846 13553 6.493802 AGTTCCCTGTTTATTCCCTTTCTTTC 59.506 38.462 0.00 0.00 0.00 2.62
5847 13554 5.330233 TCCCTGTTTATTCCCTTTCTTTCC 58.670 41.667 0.00 0.00 0.00 3.13
5848 13555 4.466370 CCCTGTTTATTCCCTTTCTTTCCC 59.534 45.833 0.00 0.00 0.00 3.97
5849 13556 5.333581 CCTGTTTATTCCCTTTCTTTCCCT 58.666 41.667 0.00 0.00 0.00 4.20
5850 13557 5.780282 CCTGTTTATTCCCTTTCTTTCCCTT 59.220 40.000 0.00 0.00 0.00 3.95
5851 13558 6.270000 CCTGTTTATTCCCTTTCTTTCCCTTT 59.730 38.462 0.00 0.00 0.00 3.11
5852 13559 7.202093 CCTGTTTATTCCCTTTCTTTCCCTTTT 60.202 37.037 0.00 0.00 0.00 2.27
5853 13560 7.505258 TGTTTATTCCCTTTCTTTCCCTTTTG 58.495 34.615 0.00 0.00 0.00 2.44
5854 13561 7.126573 TGTTTATTCCCTTTCTTTCCCTTTTGT 59.873 33.333 0.00 0.00 0.00 2.83
5855 13562 8.644216 GTTTATTCCCTTTCTTTCCCTTTTGTA 58.356 33.333 0.00 0.00 0.00 2.41
5856 13563 6.918067 ATTCCCTTTCTTTCCCTTTTGTAG 57.082 37.500 0.00 0.00 0.00 2.74
5857 13564 4.149598 TCCCTTTCTTTCCCTTTTGTAGC 58.850 43.478 0.00 0.00 0.00 3.58
5858 13565 3.895041 CCCTTTCTTTCCCTTTTGTAGCA 59.105 43.478 0.00 0.00 0.00 3.49
5883 13590 2.215363 GTGCACAAATGTTTACGCACAC 59.785 45.455 13.17 4.57 42.43 3.82
5893 13600 5.950758 TGTTTACGCACACCTTAATTGAT 57.049 34.783 0.00 0.00 0.00 2.57
5896 13603 1.472480 ACGCACACCTTAATTGATGGC 59.528 47.619 0.00 0.00 0.00 4.40
5897 13604 1.472082 CGCACACCTTAATTGATGGCA 59.528 47.619 0.00 0.00 0.00 4.92
5900 13607 2.487762 CACACCTTAATTGATGGCACGT 59.512 45.455 0.00 0.00 0.00 4.49
5911 13618 2.483877 TGATGGCACGTCACTTTCAATC 59.516 45.455 0.00 0.00 0.00 2.67
5915 13622 1.601903 GCACGTCACTTTCAATCCACA 59.398 47.619 0.00 0.00 0.00 4.17
5916 13623 2.602217 GCACGTCACTTTCAATCCACAC 60.602 50.000 0.00 0.00 0.00 3.82
5921 13628 3.073678 TCACTTTCAATCCACACCATCG 58.926 45.455 0.00 0.00 0.00 3.84
5922 13629 1.812571 ACTTTCAATCCACACCATCGC 59.187 47.619 0.00 0.00 0.00 4.58
5923 13630 1.133025 CTTTCAATCCACACCATCGCC 59.867 52.381 0.00 0.00 0.00 5.54
5926 13633 1.105457 CAATCCACACCATCGCCATT 58.895 50.000 0.00 0.00 0.00 3.16
5951 13658 5.461032 TTTTTAAACTACTGGTGGCATGG 57.539 39.130 0.00 0.00 0.00 3.66
5952 13659 2.799126 TAAACTACTGGTGGCATGGG 57.201 50.000 0.00 0.00 0.00 4.00
5953 13660 0.611896 AAACTACTGGTGGCATGGGC 60.612 55.000 0.00 0.00 40.13 5.36
5955 13662 3.326578 TACTGGTGGCATGGGCGT 61.327 61.111 0.00 0.00 42.47 5.68
5957 13664 1.341913 TACTGGTGGCATGGGCGTAT 61.342 55.000 0.00 0.00 42.47 3.06
5958 13665 1.453745 CTGGTGGCATGGGCGTATT 60.454 57.895 0.00 0.00 42.47 1.89
5959 13666 1.000270 TGGTGGCATGGGCGTATTT 60.000 52.632 0.00 0.00 42.47 1.40
5960 13667 1.034838 TGGTGGCATGGGCGTATTTC 61.035 55.000 0.00 0.00 42.47 2.17
5961 13668 1.733526 GTGGCATGGGCGTATTTCC 59.266 57.895 0.00 0.00 42.47 3.13
5962 13669 0.751643 GTGGCATGGGCGTATTTCCT 60.752 55.000 0.00 0.00 42.47 3.36
5963 13670 0.840617 TGGCATGGGCGTATTTCCTA 59.159 50.000 0.00 0.00 42.47 2.94
5964 13671 1.235724 GGCATGGGCGTATTTCCTAC 58.764 55.000 0.00 0.00 42.47 3.18
5970 13677 3.621520 CGTATTTCCTACGCCGCC 58.378 61.111 0.00 0.00 45.96 6.13
5971 13678 1.227031 CGTATTTCCTACGCCGCCA 60.227 57.895 0.00 0.00 45.96 5.69
5972 13679 1.485032 CGTATTTCCTACGCCGCCAC 61.485 60.000 0.00 0.00 45.96 5.01
5974 13681 0.249676 TATTTCCTACGCCGCCACAA 59.750 50.000 0.00 0.00 0.00 3.33
5977 13684 3.202001 CCTACGCCGCCACAATGG 61.202 66.667 0.00 0.00 41.55 3.16
5978 13685 2.435938 CTACGCCGCCACAATGGT 60.436 61.111 0.00 0.00 40.46 3.55
5981 13688 3.669344 CGCCGCCACAATGGTGTT 61.669 61.111 7.59 0.00 46.25 3.32
5983 13690 1.506262 GCCGCCACAATGGTGTTAG 59.494 57.895 7.59 0.00 46.25 2.34
5984 13691 1.241315 GCCGCCACAATGGTGTTAGT 61.241 55.000 7.59 0.00 46.25 2.24
5985 13692 0.521291 CCGCCACAATGGTGTTAGTG 59.479 55.000 7.59 0.00 46.25 2.74
5989 13696 2.857483 CCACAATGGTGTTAGTGGTGA 58.143 47.619 0.00 0.00 44.95 4.02
5990 13697 2.552315 CCACAATGGTGTTAGTGGTGAC 59.448 50.000 0.00 0.00 44.95 3.67
5992 13699 2.158871 ACAATGGTGTTAGTGGTGACGT 60.159 45.455 0.00 0.00 32.58 4.34
5993 13700 2.163818 ATGGTGTTAGTGGTGACGTG 57.836 50.000 0.00 0.00 0.00 4.49
5994 13701 0.825410 TGGTGTTAGTGGTGACGTGT 59.175 50.000 0.00 0.00 0.00 4.49
5995 13702 1.214367 GGTGTTAGTGGTGACGTGTG 58.786 55.000 0.00 0.00 0.00 3.82
5997 13704 2.124903 GTGTTAGTGGTGACGTGTGAG 58.875 52.381 0.00 0.00 0.00 3.51
5998 13705 1.752498 TGTTAGTGGTGACGTGTGAGT 59.248 47.619 0.00 0.00 0.00 3.41
6000 13707 3.004002 TGTTAGTGGTGACGTGTGAGTAG 59.996 47.826 0.00 0.00 0.00 2.57
6001 13708 1.977056 AGTGGTGACGTGTGAGTAGA 58.023 50.000 0.00 0.00 0.00 2.59
6002 13709 1.607628 AGTGGTGACGTGTGAGTAGAC 59.392 52.381 0.00 0.00 0.00 2.59
6003 13710 1.335810 GTGGTGACGTGTGAGTAGACA 59.664 52.381 0.00 0.00 0.00 3.41
6004 13711 2.025898 TGGTGACGTGTGAGTAGACAA 58.974 47.619 0.00 0.00 0.00 3.18
6005 13712 2.626266 TGGTGACGTGTGAGTAGACAAT 59.374 45.455 0.00 0.00 0.00 2.71
6006 13713 3.069016 TGGTGACGTGTGAGTAGACAATT 59.931 43.478 0.00 0.00 0.00 2.32
6007 13714 4.278919 TGGTGACGTGTGAGTAGACAATTA 59.721 41.667 0.00 0.00 0.00 1.40
6008 13715 4.620184 GGTGACGTGTGAGTAGACAATTAC 59.380 45.833 0.00 0.00 0.00 1.89
6009 13716 4.320164 GTGACGTGTGAGTAGACAATTACG 59.680 45.833 0.00 0.00 36.48 3.18
6010 13717 3.240069 ACGTGTGAGTAGACAATTACGC 58.760 45.455 0.00 0.00 34.01 4.42
6011 13718 2.597305 CGTGTGAGTAGACAATTACGCC 59.403 50.000 0.00 0.00 0.00 5.68
6012 13719 3.581755 GTGTGAGTAGACAATTACGCCA 58.418 45.455 0.00 0.00 0.00 5.69
6014 13721 3.006003 TGTGAGTAGACAATTACGCCACA 59.994 43.478 0.00 0.00 38.44 4.17
6015 13722 3.991773 GTGAGTAGACAATTACGCCACAA 59.008 43.478 0.00 0.00 34.82 3.33
6016 13723 3.991773 TGAGTAGACAATTACGCCACAAC 59.008 43.478 0.00 0.00 0.00 3.32
6017 13724 3.332034 AGTAGACAATTACGCCACAACC 58.668 45.455 0.00 0.00 0.00 3.77
6018 13725 2.264005 AGACAATTACGCCACAACCA 57.736 45.000 0.00 0.00 0.00 3.67
6029 13736 3.854856 ACAACCATGTGTGTGGGC 58.145 55.556 0.00 0.00 43.77 5.36
6030 13737 1.832167 ACAACCATGTGTGTGGGCC 60.832 57.895 0.00 0.00 43.77 5.80
6031 13738 2.203625 AACCATGTGTGTGGGCCC 60.204 61.111 17.59 17.59 43.77 5.80
6032 13739 3.080158 AACCATGTGTGTGGGCCCA 62.080 57.895 24.45 24.45 43.77 5.36
6033 13740 2.203611 CCATGTGTGTGGGCCCAA 60.204 61.111 30.64 11.78 35.55 4.12
6034 13741 2.573083 CCATGTGTGTGGGCCCAAC 61.573 63.158 30.64 25.67 35.55 3.77
6035 13742 1.831726 CATGTGTGTGGGCCCAACA 60.832 57.895 30.64 28.02 0.00 3.33
6036 13743 1.531365 ATGTGTGTGGGCCCAACAG 60.531 57.895 30.64 0.00 0.00 3.16
6037 13744 3.605664 GTGTGTGGGCCCAACAGC 61.606 66.667 30.64 20.53 0.00 4.40
6046 13753 2.297937 GCCCAACAGCCTACCTAGT 58.702 57.895 0.00 0.00 0.00 2.57
6047 13754 0.178301 GCCCAACAGCCTACCTAGTC 59.822 60.000 0.00 0.00 0.00 2.59
6048 13755 0.460311 CCCAACAGCCTACCTAGTCG 59.540 60.000 0.00 0.00 0.00 4.18
6049 13756 0.179108 CCAACAGCCTACCTAGTCGC 60.179 60.000 0.00 0.00 0.00 5.19
6051 13758 0.679002 AACAGCCTACCTAGTCGCGA 60.679 55.000 3.71 3.71 0.00 5.87
6053 13760 0.248539 CAGCCTACCTAGTCGCGAAC 60.249 60.000 12.06 5.35 0.00 3.95
6055 13762 0.384669 GCCTACCTAGTCGCGAACAT 59.615 55.000 12.06 2.05 0.00 2.71
6056 13763 1.202382 GCCTACCTAGTCGCGAACATT 60.202 52.381 12.06 0.00 0.00 2.71
6058 13765 3.305199 GCCTACCTAGTCGCGAACATTAT 60.305 47.826 12.06 0.00 0.00 1.28
6059 13766 4.795308 GCCTACCTAGTCGCGAACATTATT 60.795 45.833 12.06 0.00 0.00 1.40
6060 13767 4.680110 CCTACCTAGTCGCGAACATTATTG 59.320 45.833 12.06 0.00 0.00 1.90
6063 13770 3.245284 CCTAGTCGCGAACATTATTGGTG 59.755 47.826 12.06 0.00 0.00 4.17
6064 13771 1.396996 AGTCGCGAACATTATTGGTGC 59.603 47.619 12.06 0.00 0.00 5.01
6065 13772 0.730265 TCGCGAACATTATTGGTGCC 59.270 50.000 6.20 0.00 0.00 5.01
6066 13773 0.449786 CGCGAACATTATTGGTGCCA 59.550 50.000 0.00 0.00 0.00 4.92
6069 13877 2.462889 CGAACATTATTGGTGCCATGC 58.537 47.619 0.00 0.00 0.00 4.06
6084 13892 1.511850 CATGCCAAAGACTCGACACA 58.488 50.000 0.00 0.00 0.00 3.72
6096 13904 0.031043 TCGACACACCACTGGTTACG 59.969 55.000 0.00 2.74 31.02 3.18
6109 13917 2.573941 GGTTACGTACCTAGCTGTGG 57.426 55.000 0.00 0.42 44.10 4.17
6110 13918 1.470458 GGTTACGTACCTAGCTGTGGC 60.470 57.143 0.00 0.00 44.10 5.01
6112 13920 1.771565 TACGTACCTAGCTGTGGCAT 58.228 50.000 0.00 0.00 41.70 4.40
6113 13921 0.175760 ACGTACCTAGCTGTGGCATG 59.824 55.000 0.00 0.00 41.70 4.06
6114 13922 0.530650 CGTACCTAGCTGTGGCATGG 60.531 60.000 0.00 0.00 41.70 3.66
6115 13923 0.179045 GTACCTAGCTGTGGCATGGG 60.179 60.000 0.00 0.00 41.70 4.00
6116 13924 1.983119 TACCTAGCTGTGGCATGGGC 61.983 60.000 0.00 0.00 41.70 5.36
6117 13925 2.593978 CTAGCTGTGGCATGGGCT 59.406 61.111 14.17 14.17 41.70 5.19
6118 13926 1.699054 CCTAGCTGTGGCATGGGCTA 61.699 60.000 14.73 14.73 41.70 3.93
6119 13927 0.181114 CTAGCTGTGGCATGGGCTAA 59.819 55.000 15.76 5.19 41.70 3.09
6120 13928 0.623194 TAGCTGTGGCATGGGCTAAA 59.377 50.000 13.68 0.00 41.70 1.85
6121 13929 0.032813 AGCTGTGGCATGGGCTAAAT 60.033 50.000 9.41 0.00 41.70 1.40
6122 13930 0.103572 GCTGTGGCATGGGCTAAATG 59.896 55.000 0.00 0.00 40.87 2.32
6128 13936 1.473258 GCATGGGCTAAATGGACACA 58.527 50.000 0.00 0.00 36.96 3.72
6132 13940 3.343941 TGGGCTAAATGGACACACTAC 57.656 47.619 0.00 0.00 0.00 2.73
6137 13945 4.324267 GCTAAATGGACACACTACTGGTT 58.676 43.478 0.00 0.00 0.00 3.67
6145 13953 7.266922 TGGACACACTACTGGTTTATTTTTC 57.733 36.000 0.00 0.00 0.00 2.29
6150 13958 7.066043 ACACACTACTGGTTTATTTTTCGTCAA 59.934 33.333 0.00 0.00 0.00 3.18
6154 13962 8.073768 ACTACTGGTTTATTTTTCGTCAATGTG 58.926 33.333 0.00 0.00 0.00 3.21
6158 13999 8.121167 TGGTTTATTTTTCGTCAATGTGTTTC 57.879 30.769 0.00 0.00 0.00 2.78
6161 14002 4.617808 TTTTTCGTCAATGTGTTTCGGA 57.382 36.364 0.00 0.00 0.00 4.55
6165 14006 1.600023 GTCAATGTGTTTCGGACCCA 58.400 50.000 0.00 0.00 0.00 4.51
6177 14018 3.443145 TCGGACCCAAATATTTGTGGT 57.557 42.857 27.58 27.58 41.34 4.16
6179 14020 3.085533 CGGACCCAAATATTTGTGGTGA 58.914 45.455 30.20 0.00 39.88 4.02
6183 14024 3.076785 ACCCAAATATTTGTGGTGAGGGA 59.923 43.478 27.06 0.00 39.01 4.20
6185 14026 4.099881 CCCAAATATTTGTGGTGAGGGATG 59.900 45.833 23.24 6.57 36.45 3.51
6186 14027 4.441913 CCAAATATTTGTGGTGAGGGATGC 60.442 45.833 23.24 0.00 36.45 3.91
6188 14029 0.327924 ATTTGTGGTGAGGGATGCGA 59.672 50.000 0.00 0.00 0.00 5.10
6189 14030 0.321564 TTTGTGGTGAGGGATGCGAG 60.322 55.000 0.00 0.00 0.00 5.03
6190 14031 1.480212 TTGTGGTGAGGGATGCGAGT 61.480 55.000 0.00 0.00 0.00 4.18
6191 14032 1.153549 GTGGTGAGGGATGCGAGTC 60.154 63.158 0.00 0.00 0.00 3.36
6194 14035 1.591703 GTGAGGGATGCGAGTCACA 59.408 57.895 7.75 0.00 39.33 3.58
6196 14037 1.184970 TGAGGGATGCGAGTCACACA 61.185 55.000 0.00 0.00 0.00 3.72
6197 14038 0.737715 GAGGGATGCGAGTCACACAC 60.738 60.000 0.00 0.00 0.00 3.82
6199 14040 1.005037 GGATGCGAGTCACACACCA 60.005 57.895 0.00 0.00 0.00 4.17
6200 14041 1.291877 GGATGCGAGTCACACACCAC 61.292 60.000 0.00 0.00 0.00 4.16
6201 14042 0.319900 GATGCGAGTCACACACCACT 60.320 55.000 0.00 0.00 0.00 4.00
6202 14043 0.966179 ATGCGAGTCACACACCACTA 59.034 50.000 0.00 0.00 0.00 2.74
6205 14046 1.202582 GCGAGTCACACACCACTATCT 59.797 52.381 0.00 0.00 0.00 1.98
6206 14047 2.868662 CGAGTCACACACCACTATCTG 58.131 52.381 0.00 0.00 0.00 2.90
6224 14065 9.394477 CACTATCTGGTTTTTGTTTTACTTAGC 57.606 33.333 0.00 0.00 0.00 3.09
6251 14092 6.378564 AGAAAGCTAGCACATACTCTGTCTAA 59.621 38.462 18.83 0.00 35.29 2.10
6252 14093 5.766150 AGCTAGCACATACTCTGTCTAAG 57.234 43.478 18.83 0.00 35.29 2.18
6255 14096 5.298276 GCTAGCACATACTCTGTCTAAGTCT 59.702 44.000 10.63 0.00 35.29 3.24
6257 14098 6.935741 AGCACATACTCTGTCTAAGTCTAG 57.064 41.667 0.00 0.00 35.29 2.43
6261 14102 7.677747 GCACATACTCTGTCTAAGTCTAGTCAC 60.678 44.444 0.00 0.00 35.29 3.67
6265 14106 3.025262 CTGTCTAAGTCTAGTCACCCCC 58.975 54.545 0.00 0.00 0.00 5.40
6269 14110 3.596956 TCTAAGTCTAGTCACCCCCTCTT 59.403 47.826 0.00 0.00 0.00 2.85
6274 14115 1.289530 CTAGTCACCCCCTCTTCCTCT 59.710 57.143 0.00 0.00 0.00 3.69
6276 14117 1.000486 TCACCCCCTCTTCCTCTCG 60.000 63.158 0.00 0.00 0.00 4.04
6281 14122 0.753848 CCCCTCTTCCTCTCGAGACC 60.754 65.000 12.08 0.00 0.00 3.85
6287 14128 2.438614 CCTCTCGAGACCAGCCGA 60.439 66.667 12.08 0.00 0.00 5.54
6299 14140 3.786656 CAGCCGATGGATCTGGAAA 57.213 52.632 0.00 0.00 0.00 3.13
6300 14141 2.042686 CAGCCGATGGATCTGGAAAA 57.957 50.000 0.00 0.00 0.00 2.29
6306 14154 4.718961 CCGATGGATCTGGAAAATAAGGT 58.281 43.478 0.00 0.00 0.00 3.50
6308 14156 5.009010 CCGATGGATCTGGAAAATAAGGTTG 59.991 44.000 0.00 0.00 0.00 3.77
6315 14163 2.108168 GGAAAATAAGGTTGCCCCCTC 58.892 52.381 0.00 0.00 32.13 4.30
6316 14164 2.108168 GAAAATAAGGTTGCCCCCTCC 58.892 52.381 0.00 0.00 32.13 4.30
6328 14176 4.227134 CCCTCCTCGCCACCATCG 62.227 72.222 0.00 0.00 0.00 3.84
6332 14180 4.899239 CCTCGCCACCATCGGAGC 62.899 72.222 0.00 0.00 0.00 4.70
6335 14183 3.842923 CGCCACCATCGGAGCTCT 61.843 66.667 14.64 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.683708 CGGTAAAATATACGTTCGTGCATTTT 59.316 34.615 22.14 22.14 32.69 1.82
24 25 5.235616 ACTCCATGTTGCGGTAAAATATACG 59.764 40.000 0.00 0.00 0.00 3.06
47 48 6.128902 CGTGTTAGGATTCACACTACAGAAAC 60.129 42.308 1.31 0.00 41.07 2.78
219 223 5.938125 TCGAAACTGGCTAGCTAATCTTTTT 59.062 36.000 15.72 4.89 0.00 1.94
229 233 1.922570 TTCGATCGAAACTGGCTAGC 58.077 50.000 27.36 6.04 0.00 3.42
241 245 6.249893 TGACGAATGTAGTTTAGTTTCGATCG 59.750 38.462 9.36 9.36 41.09 3.69
245 249 6.361481 TCTGTGACGAATGTAGTTTAGTTTCG 59.639 38.462 0.00 0.00 43.43 3.46
392 450 5.703592 ACATAAATCAACAAGGCTAACGTGA 59.296 36.000 0.00 0.00 32.54 4.35
456 514 1.137282 GACTAGTAGAGTGGCCCAAGC 59.863 57.143 3.59 0.00 39.06 4.01
457 515 1.757699 GGACTAGTAGAGTGGCCCAAG 59.242 57.143 3.59 0.00 39.06 3.61
460 518 0.262285 AGGGACTAGTAGAGTGGCCC 59.738 60.000 3.59 5.58 40.97 5.80
461 519 1.063867 TGAGGGACTAGTAGAGTGGCC 60.064 57.143 3.59 0.00 41.55 5.36
462 520 2.438800 TGAGGGACTAGTAGAGTGGC 57.561 55.000 3.59 0.00 41.55 5.01
463 521 4.087182 TGTTTGAGGGACTAGTAGAGTGG 58.913 47.826 3.59 0.00 41.55 4.00
464 522 4.158764 CCTGTTTGAGGGACTAGTAGAGTG 59.841 50.000 3.59 0.00 41.55 3.51
465 523 4.044317 TCCTGTTTGAGGGACTAGTAGAGT 59.956 45.833 3.59 0.00 41.55 3.24
466 524 4.601084 TCCTGTTTGAGGGACTAGTAGAG 58.399 47.826 3.59 0.00 41.55 2.43
467 525 4.669866 TCCTGTTTGAGGGACTAGTAGA 57.330 45.455 3.59 0.00 41.55 2.59
468 526 5.017490 TCTTCCTGTTTGAGGGACTAGTAG 58.983 45.833 0.00 0.00 41.55 2.57
479 578 1.333619 GCGCAGTTTCTTCCTGTTTGA 59.666 47.619 0.30 0.00 32.41 2.69
496 595 2.088969 CGACAAAATTTTGCAGTAGCGC 59.911 45.455 26.94 0.00 46.23 5.92
532 631 1.512926 CCGTTGGAAAGTGAGGTCAG 58.487 55.000 0.00 0.00 0.00 3.51
601 700 6.620949 GCCTCTCTCCGAAGTTTTCAAAATAC 60.621 42.308 0.00 0.00 0.00 1.89
623 722 3.521126 AGTCTAAGTCAACATCCATGCCT 59.479 43.478 0.00 0.00 0.00 4.75
629 728 4.352887 GCGACTAGTCTAAGTCAACATCC 58.647 47.826 20.34 0.00 45.13 3.51
709 808 5.980715 GGAACCATAAAAACGTGTCATGTTT 59.019 36.000 15.95 15.95 38.84 2.83
712 811 4.155449 CGGAACCATAAAAACGTGTCATG 58.845 43.478 0.00 0.00 0.00 3.07
738 845 7.888021 ACCATATCAACACAGAGGATTGTTAAA 59.112 33.333 0.00 0.00 34.12 1.52
757 864 8.912787 ACGATATTTACGAAGATGACCATATC 57.087 34.615 0.00 0.00 34.70 1.63
784 891 4.141711 ACCAGGAATATGTGACAAGCGTAT 60.142 41.667 0.00 0.00 0.00 3.06
788 895 3.609853 TGACCAGGAATATGTGACAAGC 58.390 45.455 0.00 0.00 0.00 4.01
794 901 6.767423 TGTATGACATTGACCAGGAATATGTG 59.233 38.462 0.00 0.00 30.14 3.21
804 911 7.730332 AGTATAGATCCTGTATGACATTGACCA 59.270 37.037 0.00 0.00 0.00 4.02
1067 1174 6.419791 TCTTTGTTTCTCCCTCTTGTGTTAA 58.580 36.000 0.00 0.00 0.00 2.01
1106 1213 1.931841 CAGTGAATGTCAGCATCCTCG 59.068 52.381 0.00 0.00 33.50 4.63
1456 1597 8.891671 ATTTAAAATTGTCAACTCAAGCACAT 57.108 26.923 0.00 0.00 0.00 3.21
1597 1744 2.663602 GTGCGTTGTCTGTACTCATCAG 59.336 50.000 0.00 0.00 0.00 2.90
1958 2113 2.795329 TCTTGGACCATGAAGAAAGCC 58.205 47.619 7.59 0.00 0.00 4.35
2006 2161 0.249868 TCCAAGACTTCACTGCCACG 60.250 55.000 0.00 0.00 0.00 4.94
2297 2464 6.205658 GCATATATCTCTTCCAAAACAGGGTC 59.794 42.308 0.00 0.00 0.00 4.46
3192 3779 1.299976 GAGACGGAAACCCATGGCT 59.700 57.895 6.09 0.00 0.00 4.75
3278 3985 5.193936 CGCTTCTCAAATTTCGAATCTAGC 58.806 41.667 0.00 0.00 0.00 3.42
3526 4283 6.385766 AGGATTGTCTCTCTTGAAGGAATT 57.614 37.500 0.00 0.00 0.00 2.17
3687 7098 3.879295 CCGACCTGATTTTGCATGTAGAT 59.121 43.478 0.00 0.00 0.00 1.98
3889 7302 7.454380 TCTCAAATTATCCCAAAAGGTCAACAT 59.546 33.333 0.00 0.00 36.75 2.71
3896 7309 6.224665 TGCATCTCAAATTATCCCAAAAGG 57.775 37.500 0.00 0.00 0.00 3.11
3951 7364 5.255687 TCAATGTATGTCACTTTGCTGGAT 58.744 37.500 0.00 0.00 40.43 3.41
3991 7929 6.493115 TCCTGAATTTAAACTGCTTTCATGGA 59.507 34.615 11.52 11.52 0.00 3.41
4252 11607 4.018050 ACTTACTTTCTGAGGCCATTCCAT 60.018 41.667 5.01 0.00 37.29 3.41
4337 11819 7.566879 ACTCCCAAGTCTCATGTAAGAATCTAT 59.433 37.037 0.00 0.00 0.00 1.98
4359 11885 4.891992 ATACCACCTGTGCATATACTCC 57.108 45.455 0.00 0.00 0.00 3.85
4875 12539 0.816018 ATGGTGCGGACGAACAACAA 60.816 50.000 5.08 0.00 36.99 2.83
4936 12600 4.035675 GCTGAGAATAATCCCAAAGGTTCG 59.964 45.833 0.00 0.00 0.00 3.95
5191 12898 1.303317 AACCCTGATGAACACGCCC 60.303 57.895 0.00 0.00 0.00 6.13
5222 12929 5.417580 AGAAATGTCTGTCTGGTCTCTCTAC 59.582 44.000 0.00 0.00 30.83 2.59
5467 13174 8.193953 TCTATATATTCATGTGCAGTCCTTGA 57.806 34.615 0.00 0.00 0.00 3.02
5642 13349 8.288208 CGGATGTACGTAGACATATTTTAGAGT 58.712 37.037 3.97 0.00 40.18 3.24
5643 13350 8.288208 ACGGATGTACGTAGACATATTTTAGAG 58.712 37.037 3.97 0.00 46.58 2.43
5644 13351 8.158169 ACGGATGTACGTAGACATATTTTAGA 57.842 34.615 3.97 0.00 46.58 2.10
5668 13375 9.167311 AGACATTTCAAATGGACTAGAACATAC 57.833 33.333 14.70 0.00 0.00 2.39
5713 13420 4.321750 CGTGTACATGTACTCCCTCTGTTT 60.322 45.833 30.69 0.00 37.00 2.83
5716 13423 2.479730 GCGTGTACATGTACTCCCTCTG 60.480 54.545 30.69 17.47 37.00 3.35
5717 13424 1.749634 GCGTGTACATGTACTCCCTCT 59.250 52.381 30.69 0.00 37.00 3.69
5739 13446 7.463431 TGTATTTTCCCATTGTAGGTTACAGT 58.537 34.615 0.00 0.00 40.24 3.55
5752 13459 9.111613 CATGTTATTTGCATTGTATTTTCCCAT 57.888 29.630 0.00 0.00 0.00 4.00
5790 13497 3.018598 AGATCGATCTATTGCCACACG 57.981 47.619 26.27 0.00 34.85 4.49
5799 13506 6.717289 ACTTACTCTGGCTAGATCGATCTAT 58.283 40.000 30.25 18.37 38.60 1.98
5800 13507 6.116711 ACTTACTCTGGCTAGATCGATCTA 57.883 41.667 28.71 28.71 38.32 1.98
5801 13508 4.980573 ACTTACTCTGGCTAGATCGATCT 58.019 43.478 29.58 29.58 40.86 2.75
5802 13509 5.335348 GGAACTTACTCTGGCTAGATCGATC 60.335 48.000 17.91 17.91 31.21 3.69
5803 13510 4.521256 GGAACTTACTCTGGCTAGATCGAT 59.479 45.833 0.00 0.00 31.21 3.59
5804 13511 3.884091 GGAACTTACTCTGGCTAGATCGA 59.116 47.826 0.00 0.00 31.21 3.59
5805 13512 3.004944 GGGAACTTACTCTGGCTAGATCG 59.995 52.174 0.00 0.00 31.21 3.69
5806 13513 4.038642 CAGGGAACTTACTCTGGCTAGATC 59.961 50.000 0.00 0.00 40.21 2.75
5807 13514 3.964031 CAGGGAACTTACTCTGGCTAGAT 59.036 47.826 0.00 0.00 40.21 1.98
5808 13515 3.245658 ACAGGGAACTTACTCTGGCTAGA 60.246 47.826 0.00 0.00 42.10 2.43
5809 13516 3.100671 ACAGGGAACTTACTCTGGCTAG 58.899 50.000 0.00 0.00 42.10 3.42
5810 13517 3.185880 ACAGGGAACTTACTCTGGCTA 57.814 47.619 0.00 0.00 42.10 3.93
5811 13518 2.031495 ACAGGGAACTTACTCTGGCT 57.969 50.000 0.00 0.00 42.10 4.75
5812 13519 2.861147 AACAGGGAACTTACTCTGGC 57.139 50.000 0.00 0.00 42.10 4.85
5813 13520 5.880887 GGAATAAACAGGGAACTTACTCTGG 59.119 44.000 0.00 0.00 42.10 3.86
5814 13521 5.880887 GGGAATAAACAGGGAACTTACTCTG 59.119 44.000 0.00 0.00 43.29 3.35
5815 13522 5.791141 AGGGAATAAACAGGGAACTTACTCT 59.209 40.000 0.00 0.00 40.21 3.24
5816 13523 6.063496 AGGGAATAAACAGGGAACTTACTC 57.937 41.667 0.00 0.00 40.21 2.59
5817 13524 6.464530 AAGGGAATAAACAGGGAACTTACT 57.535 37.500 0.00 0.00 40.21 2.24
5818 13525 6.946583 AGAAAGGGAATAAACAGGGAACTTAC 59.053 38.462 0.00 0.00 40.21 2.34
5819 13526 7.098845 AGAAAGGGAATAAACAGGGAACTTA 57.901 36.000 0.00 0.00 40.21 2.24
5820 13527 5.965486 AGAAAGGGAATAAACAGGGAACTT 58.035 37.500 0.00 0.00 40.21 2.66
5821 13528 5.600669 AGAAAGGGAATAAACAGGGAACT 57.399 39.130 0.00 0.00 46.44 3.01
5822 13529 6.295123 GGAAAGAAAGGGAATAAACAGGGAAC 60.295 42.308 0.00 0.00 0.00 3.62
5823 13530 5.778241 GGAAAGAAAGGGAATAAACAGGGAA 59.222 40.000 0.00 0.00 0.00 3.97
5824 13531 5.330233 GGAAAGAAAGGGAATAAACAGGGA 58.670 41.667 0.00 0.00 0.00 4.20
5825 13532 4.466370 GGGAAAGAAAGGGAATAAACAGGG 59.534 45.833 0.00 0.00 0.00 4.45
5826 13533 5.333581 AGGGAAAGAAAGGGAATAAACAGG 58.666 41.667 0.00 0.00 0.00 4.00
5827 13534 6.918067 AAGGGAAAGAAAGGGAATAAACAG 57.082 37.500 0.00 0.00 0.00 3.16
5828 13535 7.126573 ACAAAAGGGAAAGAAAGGGAATAAACA 59.873 33.333 0.00 0.00 0.00 2.83
5829 13536 7.506114 ACAAAAGGGAAAGAAAGGGAATAAAC 58.494 34.615 0.00 0.00 0.00 2.01
5830 13537 7.684317 ACAAAAGGGAAAGAAAGGGAATAAA 57.316 32.000 0.00 0.00 0.00 1.40
5831 13538 7.039293 GCTACAAAAGGGAAAGAAAGGGAATAA 60.039 37.037 0.00 0.00 0.00 1.40
5832 13539 6.436218 GCTACAAAAGGGAAAGAAAGGGAATA 59.564 38.462 0.00 0.00 0.00 1.75
5833 13540 5.246203 GCTACAAAAGGGAAAGAAAGGGAAT 59.754 40.000 0.00 0.00 0.00 3.01
5834 13541 4.587262 GCTACAAAAGGGAAAGAAAGGGAA 59.413 41.667 0.00 0.00 0.00 3.97
5835 13542 4.149598 GCTACAAAAGGGAAAGAAAGGGA 58.850 43.478 0.00 0.00 0.00 4.20
5836 13543 3.895041 TGCTACAAAAGGGAAAGAAAGGG 59.105 43.478 0.00 0.00 0.00 3.95
5837 13544 4.584743 AGTGCTACAAAAGGGAAAGAAAGG 59.415 41.667 0.00 0.00 0.00 3.11
5838 13545 5.774498 AGTGCTACAAAAGGGAAAGAAAG 57.226 39.130 0.00 0.00 0.00 2.62
5839 13546 6.262273 CACTAGTGCTACAAAAGGGAAAGAAA 59.738 38.462 10.54 0.00 0.00 2.52
5840 13547 5.763204 CACTAGTGCTACAAAAGGGAAAGAA 59.237 40.000 10.54 0.00 0.00 2.52
5841 13548 5.305585 CACTAGTGCTACAAAAGGGAAAGA 58.694 41.667 10.54 0.00 0.00 2.52
5842 13549 5.613358 CACTAGTGCTACAAAAGGGAAAG 57.387 43.478 10.54 0.00 0.00 2.62
5857 13564 3.906008 GCGTAAACATTTGTGCACTAGTG 59.094 43.478 18.93 18.93 0.00 2.74
5858 13565 3.562141 TGCGTAAACATTTGTGCACTAGT 59.438 39.130 19.41 4.14 30.30 2.57
5878 13585 2.731968 CGTGCCATCAATTAAGGTGTGC 60.732 50.000 0.00 0.00 0.00 4.57
5883 13590 3.009723 AGTGACGTGCCATCAATTAAGG 58.990 45.455 0.00 0.00 0.00 2.69
5893 13600 1.234821 GGATTGAAAGTGACGTGCCA 58.765 50.000 0.00 0.00 0.00 4.92
5896 13603 2.032030 GGTGTGGATTGAAAGTGACGTG 60.032 50.000 0.00 0.00 0.00 4.49
5897 13604 2.218603 GGTGTGGATTGAAAGTGACGT 58.781 47.619 0.00 0.00 0.00 4.34
5900 13607 3.073678 CGATGGTGTGGATTGAAAGTGA 58.926 45.455 0.00 0.00 0.00 3.41
5932 13639 2.882229 GCCCATGCCACCAGTAGTTTAA 60.882 50.000 0.00 0.00 0.00 1.52
5933 13640 1.340600 GCCCATGCCACCAGTAGTTTA 60.341 52.381 0.00 0.00 0.00 2.01
5936 13643 2.677228 GCCCATGCCACCAGTAGT 59.323 61.111 0.00 0.00 0.00 2.73
5937 13644 1.966901 TACGCCCATGCCACCAGTAG 61.967 60.000 0.00 0.00 0.00 2.57
5938 13645 1.341913 ATACGCCCATGCCACCAGTA 61.342 55.000 0.00 0.00 0.00 2.74
5939 13646 2.210144 AATACGCCCATGCCACCAGT 62.210 55.000 0.00 0.00 0.00 4.00
5940 13647 1.037030 AAATACGCCCATGCCACCAG 61.037 55.000 0.00 0.00 0.00 4.00
5941 13648 1.000270 AAATACGCCCATGCCACCA 60.000 52.632 0.00 0.00 0.00 4.17
5942 13649 1.733526 GAAATACGCCCATGCCACC 59.266 57.895 0.00 0.00 0.00 4.61
5944 13651 0.840617 TAGGAAATACGCCCATGCCA 59.159 50.000 0.00 0.00 0.00 4.92
5945 13652 1.235724 GTAGGAAATACGCCCATGCC 58.764 55.000 0.00 0.00 0.00 4.40
5955 13662 0.249676 TTGTGGCGGCGTAGGAAATA 59.750 50.000 9.37 0.00 0.00 1.40
5957 13664 1.003112 ATTGTGGCGGCGTAGGAAA 60.003 52.632 9.37 0.00 0.00 3.13
5958 13665 1.743623 CATTGTGGCGGCGTAGGAA 60.744 57.895 9.37 0.00 0.00 3.36
5959 13666 2.125310 CATTGTGGCGGCGTAGGA 60.125 61.111 9.37 0.00 0.00 2.94
5960 13667 3.202001 CCATTGTGGCGGCGTAGG 61.202 66.667 9.37 0.00 0.00 3.18
5961 13668 2.435938 ACCATTGTGGCGGCGTAG 60.436 61.111 9.37 0.00 42.67 3.51
5962 13669 2.744318 CACCATTGTGGCGGCGTA 60.744 61.111 9.37 0.00 42.67 4.42
5971 13678 2.158871 ACGTCACCACTAACACCATTGT 60.159 45.455 0.00 0.00 37.67 2.71
5972 13679 2.223144 CACGTCACCACTAACACCATTG 59.777 50.000 0.00 0.00 0.00 2.82
5974 13681 1.414919 ACACGTCACCACTAACACCAT 59.585 47.619 0.00 0.00 0.00 3.55
5977 13684 2.124903 CTCACACGTCACCACTAACAC 58.875 52.381 0.00 0.00 0.00 3.32
5978 13685 1.752498 ACTCACACGTCACCACTAACA 59.248 47.619 0.00 0.00 0.00 2.41
5979 13686 2.503920 ACTCACACGTCACCACTAAC 57.496 50.000 0.00 0.00 0.00 2.34
5981 13688 2.810274 GTCTACTCACACGTCACCACTA 59.190 50.000 0.00 0.00 0.00 2.74
5983 13690 1.335810 TGTCTACTCACACGTCACCAC 59.664 52.381 0.00 0.00 0.00 4.16
5984 13691 1.682740 TGTCTACTCACACGTCACCA 58.317 50.000 0.00 0.00 0.00 4.17
5985 13692 2.787601 TTGTCTACTCACACGTCACC 57.212 50.000 0.00 0.00 0.00 4.02
5986 13693 4.320164 CGTAATTGTCTACTCACACGTCAC 59.680 45.833 0.00 0.00 0.00 3.67
5987 13694 4.469552 CGTAATTGTCTACTCACACGTCA 58.530 43.478 0.00 0.00 0.00 4.35
5988 13695 3.300066 GCGTAATTGTCTACTCACACGTC 59.700 47.826 0.00 0.00 0.00 4.34
5989 13696 3.240069 GCGTAATTGTCTACTCACACGT 58.760 45.455 0.00 0.00 0.00 4.49
5990 13697 2.597305 GGCGTAATTGTCTACTCACACG 59.403 50.000 0.00 0.00 0.00 4.49
5992 13699 3.006003 TGTGGCGTAATTGTCTACTCACA 59.994 43.478 0.00 0.00 34.36 3.58
5993 13700 3.581755 TGTGGCGTAATTGTCTACTCAC 58.418 45.455 0.00 0.00 0.00 3.51
5994 13701 3.945981 TGTGGCGTAATTGTCTACTCA 57.054 42.857 0.00 0.00 0.00 3.41
5995 13702 3.370061 GGTTGTGGCGTAATTGTCTACTC 59.630 47.826 0.00 0.00 0.00 2.59
5997 13704 3.068560 TGGTTGTGGCGTAATTGTCTAC 58.931 45.455 0.00 0.00 0.00 2.59
5998 13705 3.404224 TGGTTGTGGCGTAATTGTCTA 57.596 42.857 0.00 0.00 0.00 2.59
6000 13707 2.227865 ACATGGTTGTGGCGTAATTGTC 59.772 45.455 0.00 0.00 33.85 3.18
6001 13708 2.235016 ACATGGTTGTGGCGTAATTGT 58.765 42.857 0.00 0.00 33.85 2.71
6012 13719 1.832167 GGCCCACACACATGGTTGT 60.832 57.895 0.00 0.00 38.16 3.32
6014 13721 2.203625 GGGCCCACACACATGGTT 60.204 61.111 19.95 0.00 38.16 3.67
6015 13722 3.080158 TTGGGCCCACACACATGGT 62.080 57.895 28.70 0.00 38.16 3.55
6016 13723 2.203611 TTGGGCCCACACACATGG 60.204 61.111 28.70 0.00 39.71 3.66
6017 13724 1.808531 CTGTTGGGCCCACACACATG 61.809 60.000 28.70 15.79 0.00 3.21
6018 13725 1.531365 CTGTTGGGCCCACACACAT 60.531 57.895 28.70 0.00 0.00 3.21
6028 13735 0.178301 GACTAGGTAGGCTGTTGGGC 59.822 60.000 0.00 0.00 41.20 5.36
6029 13736 0.460311 CGACTAGGTAGGCTGTTGGG 59.540 60.000 0.00 0.00 0.00 4.12
6030 13737 0.179108 GCGACTAGGTAGGCTGTTGG 60.179 60.000 0.00 0.00 0.00 3.77
6031 13738 0.525668 CGCGACTAGGTAGGCTGTTG 60.526 60.000 0.00 0.00 0.00 3.33
6032 13739 0.679002 TCGCGACTAGGTAGGCTGTT 60.679 55.000 3.71 0.00 0.00 3.16
6033 13740 0.679002 TTCGCGACTAGGTAGGCTGT 60.679 55.000 9.15 0.00 0.00 4.40
6034 13741 0.248539 GTTCGCGACTAGGTAGGCTG 60.249 60.000 9.15 0.00 0.00 4.85
6035 13742 0.679002 TGTTCGCGACTAGGTAGGCT 60.679 55.000 9.15 0.00 0.00 4.58
6036 13743 0.384669 ATGTTCGCGACTAGGTAGGC 59.615 55.000 9.15 0.00 0.00 3.93
6037 13744 2.865343 AATGTTCGCGACTAGGTAGG 57.135 50.000 9.15 0.00 0.00 3.18
6039 13746 4.098349 ACCAATAATGTTCGCGACTAGGTA 59.902 41.667 9.15 0.00 0.00 3.08
6040 13747 3.118884 ACCAATAATGTTCGCGACTAGGT 60.119 43.478 9.15 5.81 0.00 3.08
6041 13748 3.245284 CACCAATAATGTTCGCGACTAGG 59.755 47.826 9.15 5.13 0.00 3.02
6042 13749 3.302480 GCACCAATAATGTTCGCGACTAG 60.302 47.826 9.15 0.00 0.00 2.57
6043 13750 2.605818 GCACCAATAATGTTCGCGACTA 59.394 45.455 9.15 0.00 0.00 2.59
6045 13752 1.531058 GGCACCAATAATGTTCGCGAC 60.531 52.381 9.15 4.85 0.00 5.19
6046 13753 0.730265 GGCACCAATAATGTTCGCGA 59.270 50.000 3.71 3.71 0.00 5.87
6047 13754 0.449786 TGGCACCAATAATGTTCGCG 59.550 50.000 0.00 0.00 0.00 5.87
6048 13755 2.462889 CATGGCACCAATAATGTTCGC 58.537 47.619 0.00 0.00 0.00 4.70
6049 13756 2.462889 GCATGGCACCAATAATGTTCG 58.537 47.619 0.00 0.00 0.00 3.95
6051 13758 2.186243 TGGCATGGCACCAATAATGTT 58.814 42.857 19.43 0.00 33.12 2.71
6053 13760 2.983907 TTGGCATGGCACCAATAATG 57.016 45.000 23.26 0.00 42.23 1.90
6055 13762 2.233431 GTCTTTGGCATGGCACCAATAA 59.767 45.455 23.26 12.16 46.25 1.40
6056 13763 1.824230 GTCTTTGGCATGGCACCAATA 59.176 47.619 23.26 3.59 46.25 1.90
6058 13765 0.469705 AGTCTTTGGCATGGCACCAA 60.470 50.000 23.26 13.69 45.37 3.67
6059 13766 0.895100 GAGTCTTTGGCATGGCACCA 60.895 55.000 23.26 10.80 34.65 4.17
6060 13767 1.885871 GAGTCTTTGGCATGGCACC 59.114 57.895 23.26 10.15 0.00 5.01
6063 13770 0.955428 TGTCGAGTCTTTGGCATGGC 60.955 55.000 13.29 13.29 0.00 4.40
6064 13771 0.798776 GTGTCGAGTCTTTGGCATGG 59.201 55.000 0.00 0.00 0.00 3.66
6065 13772 1.195448 GTGTGTCGAGTCTTTGGCATG 59.805 52.381 0.00 0.00 0.00 4.06
6066 13773 1.512926 GTGTGTCGAGTCTTTGGCAT 58.487 50.000 0.00 0.00 0.00 4.40
6069 13877 1.202533 AGTGGTGTGTCGAGTCTTTGG 60.203 52.381 0.00 0.00 0.00 3.28
6096 13904 0.179045 CCCATGCCACAGCTAGGTAC 60.179 60.000 6.28 0.00 40.80 3.34
6100 13908 0.181114 TTAGCCCATGCCACAGCTAG 59.819 55.000 0.00 0.00 38.92 3.42
6101 13909 0.623194 TTTAGCCCATGCCACAGCTA 59.377 50.000 0.00 0.00 40.80 3.32
6102 13910 0.032813 ATTTAGCCCATGCCACAGCT 60.033 50.000 0.00 0.00 40.80 4.24
6104 13912 0.748450 CCATTTAGCCCATGCCACAG 59.252 55.000 0.00 0.00 38.69 3.66
6105 13913 0.334335 TCCATTTAGCCCATGCCACA 59.666 50.000 0.00 0.00 38.69 4.17
6107 13915 0.334335 TGTCCATTTAGCCCATGCCA 59.666 50.000 0.00 0.00 38.69 4.92
6109 13917 1.134946 GTGTGTCCATTTAGCCCATGC 59.865 52.381 0.00 0.00 37.95 4.06
6110 13918 2.726821 AGTGTGTCCATTTAGCCCATG 58.273 47.619 0.00 0.00 0.00 3.66
6112 13920 2.910319 AGTAGTGTGTCCATTTAGCCCA 59.090 45.455 0.00 0.00 0.00 5.36
6113 13921 3.270877 CAGTAGTGTGTCCATTTAGCCC 58.729 50.000 0.00 0.00 0.00 5.19
6114 13922 3.270877 CCAGTAGTGTGTCCATTTAGCC 58.729 50.000 0.00 0.00 0.00 3.93
6115 13923 3.939066 ACCAGTAGTGTGTCCATTTAGC 58.061 45.455 0.00 0.00 0.00 3.09
6116 13924 8.561738 AATAAACCAGTAGTGTGTCCATTTAG 57.438 34.615 0.00 0.00 0.00 1.85
6117 13925 8.927675 AAATAAACCAGTAGTGTGTCCATTTA 57.072 30.769 0.00 0.00 0.00 1.40
6118 13926 7.833285 AAATAAACCAGTAGTGTGTCCATTT 57.167 32.000 0.00 2.41 0.00 2.32
6119 13927 7.833285 AAAATAAACCAGTAGTGTGTCCATT 57.167 32.000 0.00 0.00 0.00 3.16
6120 13928 7.308348 CGAAAAATAAACCAGTAGTGTGTCCAT 60.308 37.037 0.00 0.00 0.00 3.41
6121 13929 6.017770 CGAAAAATAAACCAGTAGTGTGTCCA 60.018 38.462 0.00 0.00 0.00 4.02
6122 13930 6.017687 ACGAAAAATAAACCAGTAGTGTGTCC 60.018 38.462 0.00 0.00 0.00 4.02
6128 13936 8.073768 CACATTGACGAAAAATAAACCAGTAGT 58.926 33.333 0.00 0.00 0.00 2.73
6132 13940 7.692908 AACACATTGACGAAAAATAAACCAG 57.307 32.000 0.00 0.00 0.00 4.00
6137 13945 6.633634 GTCCGAAACACATTGACGAAAAATAA 59.366 34.615 0.00 0.00 0.00 1.40
6145 13953 0.515564 GGGTCCGAAACACATTGACG 59.484 55.000 0.00 0.00 0.00 4.35
6150 13958 5.245075 ACAAATATTTGGGTCCGAAACACAT 59.755 36.000 27.43 3.28 42.12 3.21
6154 13962 4.021807 ACCACAAATATTTGGGTCCGAAAC 60.022 41.667 27.43 0.00 39.92 2.78
6158 13999 3.085533 TCACCACAAATATTTGGGTCCG 58.914 45.455 27.43 19.51 39.92 4.79
6161 14002 3.076785 TCCCTCACCACAAATATTTGGGT 59.923 43.478 27.43 25.71 39.92 4.51
6165 14006 3.381272 CGCATCCCTCACCACAAATATTT 59.619 43.478 0.00 0.00 0.00 1.40
6177 14018 1.184970 TGTGTGACTCGCATCCCTCA 61.185 55.000 0.00 0.00 0.00 3.86
6179 14020 1.293498 GTGTGTGACTCGCATCCCT 59.707 57.895 0.00 0.00 38.85 4.20
6183 14024 0.966179 TAGTGGTGTGTGACTCGCAT 59.034 50.000 0.52 0.00 38.85 4.73
6185 14026 1.202582 AGATAGTGGTGTGTGACTCGC 59.797 52.381 0.00 0.00 0.00 5.03
6186 14027 2.416027 CCAGATAGTGGTGTGTGACTCG 60.416 54.545 0.00 0.00 42.17 4.18
6199 14040 9.350951 AGCTAAGTAAAACAAAAACCAGATAGT 57.649 29.630 0.00 0.00 0.00 2.12
6202 14043 9.569122 TCTAGCTAAGTAAAACAAAAACCAGAT 57.431 29.630 0.00 0.00 0.00 2.90
6206 14047 8.965172 GCTTTCTAGCTAAGTAAAACAAAAACC 58.035 33.333 0.00 0.00 44.27 3.27
6224 14065 6.039270 AGACAGAGTATGTGCTAGCTTTCTAG 59.961 42.308 17.23 6.39 44.17 2.43
6231 14072 5.298276 AGACTTAGACAGAGTATGTGCTAGC 59.702 44.000 8.10 8.10 44.17 3.42
6244 14085 3.025262 GGGGGTGACTAGACTTAGACAG 58.975 54.545 0.00 0.00 33.36 3.51
6251 14092 1.007359 GGAAGAGGGGGTGACTAGACT 59.993 57.143 0.00 0.00 0.00 3.24
6252 14093 1.007359 AGGAAGAGGGGGTGACTAGAC 59.993 57.143 0.00 0.00 0.00 2.59
6255 14096 1.288335 GAGAGGAAGAGGGGGTGACTA 59.712 57.143 0.00 0.00 0.00 2.59
6257 14098 1.324005 CGAGAGGAAGAGGGGGTGAC 61.324 65.000 0.00 0.00 0.00 3.67
6261 14102 0.753848 GTCTCGAGAGGAAGAGGGGG 60.754 65.000 17.22 0.00 35.34 5.40
6265 14106 0.738389 GCTGGTCTCGAGAGGAAGAG 59.262 60.000 17.22 8.38 35.91 2.85
6269 14110 2.272230 ATCGGCTGGTCTCGAGAGGA 62.272 60.000 17.22 4.12 38.83 3.71
6274 14115 1.455773 ATCCATCGGCTGGTCTCGA 60.456 57.895 0.00 0.00 46.08 4.04
6276 14117 0.033228 CAGATCCATCGGCTGGTCTC 59.967 60.000 0.00 0.00 46.08 3.36
6281 14122 2.042686 TTTTCCAGATCCATCGGCTG 57.957 50.000 0.00 0.00 0.00 4.85
6287 14128 4.651045 GGCAACCTTATTTTCCAGATCCAT 59.349 41.667 0.00 0.00 0.00 3.41
6315 14163 4.899239 GCTCCGATGGTGGCGAGG 62.899 72.222 0.00 0.00 0.00 4.63
6316 14164 3.781770 GAGCTCCGATGGTGGCGAG 62.782 68.421 0.87 0.00 0.00 5.03
6320 14168 2.818132 GGAGAGCTCCGATGGTGG 59.182 66.667 10.93 0.00 40.36 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.