Multiple sequence alignment - TraesCS2D01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G029300 chr2D 100.000 3965 0 0 1 3965 11965712 11961748 0.000000e+00 7323
1 TraesCS2D01G029300 chr2D 81.158 950 161 13 968 1905 435072644 435071701 0.000000e+00 747
2 TraesCS2D01G029300 chr2D 83.333 756 114 6 2299 3054 435071112 435070369 0.000000e+00 688
3 TraesCS2D01G029300 chr2D 74.138 928 220 12 989 1900 3971956 3971033 2.250000e-97 366
4 TraesCS2D01G029300 chr2D 94.444 126 7 0 3840 3965 624373185 624373060 1.120000e-45 195
5 TraesCS2D01G029300 chr2A 97.017 2581 62 2 707 3285 12702623 12700056 0.000000e+00 4325
6 TraesCS2D01G029300 chr2A 94.496 1708 78 11 2062 3755 12577898 12576193 0.000000e+00 2619
7 TraesCS2D01G029300 chr2A 85.000 1180 149 21 2091 3263 12589056 12587898 0.000000e+00 1173
8 TraesCS2D01G029300 chr2A 86.004 1036 129 12 921 1946 12590240 12589211 0.000000e+00 1096
9 TraesCS2D01G029300 chr2A 79.550 1022 182 18 994 2002 551721513 551722520 0.000000e+00 704
10 TraesCS2D01G029300 chr2A 83.929 728 105 6 2328 3055 551722702 551723417 0.000000e+00 686
11 TraesCS2D01G029300 chr2A 89.262 447 40 4 3315 3757 12699866 12699424 1.610000e-153 553
12 TraesCS2D01G029300 chr2A 78.652 623 131 2 2331 2952 772219431 772218810 2.850000e-111 412
13 TraesCS2D01G029300 chr2A 87.083 240 14 9 686 924 12578113 12577890 5.080000e-64 255
14 TraesCS2D01G029300 chr2A 92.941 85 6 0 719 803 12580605 12580521 1.500000e-24 124
15 TraesCS2D01G029300 chr6D 95.595 613 22 2 30 641 8324050 8323442 0.000000e+00 977
16 TraesCS2D01G029300 chr6D 94.560 625 31 2 30 653 462436504 462437126 0.000000e+00 963
17 TraesCS2D01G029300 chr6D 93.701 127 8 0 3839 3965 130390302 130390176 1.450000e-44 191
18 TraesCS2D01G029300 chr6D 94.309 123 7 0 3841 3963 434815923 434815801 5.230000e-44 189
19 TraesCS2D01G029300 chr3D 95.277 614 26 3 30 641 603335763 603336375 0.000000e+00 970
20 TraesCS2D01G029300 chr3D 95.269 613 23 4 30 641 501950714 501951321 0.000000e+00 966
21 TraesCS2D01G029300 chr3D 95.552 607 21 3 30 635 591138290 591138891 0.000000e+00 966
22 TraesCS2D01G029300 chr3D 94.560 625 28 2 30 653 563672506 563671887 0.000000e+00 961
23 TraesCS2D01G029300 chr3D 76.972 469 92 15 2492 2952 73714149 73713689 1.830000e-63 254
24 TraesCS2D01G029300 chr1D 95.114 614 28 2 30 641 414330935 414331548 0.000000e+00 966
25 TraesCS2D01G029300 chr1D 93.701 127 8 0 3839 3965 266787224 266787098 1.450000e-44 191
26 TraesCS2D01G029300 chr7D 95.106 613 27 2 30 641 45678156 45678766 0.000000e+00 963
27 TraesCS2D01G029300 chrUn 95.106 613 25 5 30 641 95056468 95057076 0.000000e+00 961
28 TraesCS2D01G029300 chr5D 80.490 1061 187 13 877 1928 522761752 522760703 0.000000e+00 795
29 TraesCS2D01G029300 chr5D 85.167 627 91 2 2323 2948 522759648 522759023 3.340000e-180 641
30 TraesCS2D01G029300 chr5D 73.927 932 202 25 993 1899 441927052 441926137 1.770000e-88 337
31 TraesCS2D01G029300 chr2B 81.520 974 157 13 944 1905 513481274 513480312 0.000000e+00 780
32 TraesCS2D01G029300 chr2B 84.011 738 109 5 2299 3036 513480110 513479382 0.000000e+00 701
33 TraesCS2D01G029300 chr2B 73.797 935 221 17 989 1902 454694442 454693511 8.150000e-92 348
34 TraesCS2D01G029300 chr2B 73.252 815 184 19 989 1774 7643075 7643884 2.350000e-67 267
35 TraesCS2D01G029300 chr5B 75.306 818 173 18 1100 1902 537963957 537963154 8.100000e-97 364
36 TraesCS2D01G029300 chr4A 93.701 127 8 0 3839 3965 57176476 57176350 1.450000e-44 191
37 TraesCS2D01G029300 chr3A 93.701 127 8 0 3839 3965 108370298 108370424 1.450000e-44 191
38 TraesCS2D01G029300 chr7B 92.913 127 9 0 3839 3965 215392715 215392589 6.770000e-43 185
39 TraesCS2D01G029300 chr4B 92.913 127 9 0 3839 3965 131751834 131751708 6.770000e-43 185
40 TraesCS2D01G029300 chr6B 92.913 127 8 1 3839 3965 571709399 571709524 2.430000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G029300 chr2D 11961748 11965712 3964 True 7323.000000 7323 100.000000 1 3965 1 chr2D.!!$R2 3964
1 TraesCS2D01G029300 chr2D 435070369 435072644 2275 True 717.500000 747 82.245500 968 3054 2 chr2D.!!$R4 2086
2 TraesCS2D01G029300 chr2D 3971033 3971956 923 True 366.000000 366 74.138000 989 1900 1 chr2D.!!$R1 911
3 TraesCS2D01G029300 chr2A 12699424 12702623 3199 True 2439.000000 4325 93.139500 707 3757 2 chr2A.!!$R4 3050
4 TraesCS2D01G029300 chr2A 12587898 12590240 2342 True 1134.500000 1173 85.502000 921 3263 2 chr2A.!!$R3 2342
5 TraesCS2D01G029300 chr2A 12576193 12580605 4412 True 999.333333 2619 91.506667 686 3755 3 chr2A.!!$R2 3069
6 TraesCS2D01G029300 chr2A 551721513 551723417 1904 False 695.000000 704 81.739500 994 3055 2 chr2A.!!$F1 2061
7 TraesCS2D01G029300 chr2A 772218810 772219431 621 True 412.000000 412 78.652000 2331 2952 1 chr2A.!!$R1 621
8 TraesCS2D01G029300 chr6D 8323442 8324050 608 True 977.000000 977 95.595000 30 641 1 chr6D.!!$R1 611
9 TraesCS2D01G029300 chr6D 462436504 462437126 622 False 963.000000 963 94.560000 30 653 1 chr6D.!!$F1 623
10 TraesCS2D01G029300 chr3D 603335763 603336375 612 False 970.000000 970 95.277000 30 641 1 chr3D.!!$F3 611
11 TraesCS2D01G029300 chr3D 501950714 501951321 607 False 966.000000 966 95.269000 30 641 1 chr3D.!!$F1 611
12 TraesCS2D01G029300 chr3D 591138290 591138891 601 False 966.000000 966 95.552000 30 635 1 chr3D.!!$F2 605
13 TraesCS2D01G029300 chr3D 563671887 563672506 619 True 961.000000 961 94.560000 30 653 1 chr3D.!!$R2 623
14 TraesCS2D01G029300 chr1D 414330935 414331548 613 False 966.000000 966 95.114000 30 641 1 chr1D.!!$F1 611
15 TraesCS2D01G029300 chr7D 45678156 45678766 610 False 963.000000 963 95.106000 30 641 1 chr7D.!!$F1 611
16 TraesCS2D01G029300 chrUn 95056468 95057076 608 False 961.000000 961 95.106000 30 641 1 chrUn.!!$F1 611
17 TraesCS2D01G029300 chr5D 522759023 522761752 2729 True 718.000000 795 82.828500 877 2948 2 chr5D.!!$R2 2071
18 TraesCS2D01G029300 chr5D 441926137 441927052 915 True 337.000000 337 73.927000 993 1899 1 chr5D.!!$R1 906
19 TraesCS2D01G029300 chr2B 513479382 513481274 1892 True 740.500000 780 82.765500 944 3036 2 chr2B.!!$R2 2092
20 TraesCS2D01G029300 chr2B 454693511 454694442 931 True 348.000000 348 73.797000 989 1902 1 chr2B.!!$R1 913
21 TraesCS2D01G029300 chr2B 7643075 7643884 809 False 267.000000 267 73.252000 989 1774 1 chr2B.!!$F1 785
22 TraesCS2D01G029300 chr5B 537963154 537963957 803 True 364.000000 364 75.306000 1100 1902 1 chr5B.!!$R1 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 706 0.318441 ATACCGATGTGATGAGCCCG 59.682 55.0 0.00 0.00 0.00 6.13 F
824 2633 0.333652 TCTATCCACACGTGAGGGGA 59.666 55.0 28.38 25.54 40.46 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2642 5512 1.705186 CCCAATATTGAGGATCCCGGT 59.295 52.381 17.23 0.0 0.0 5.28 R
2996 5866 6.613755 AACATAAAGGTACAATATGCGACC 57.386 37.500 10.14 0.0 34.1 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.811497 TCATATGCGAGCAATTCAAGAGG 59.189 43.478 0.57 0.00 0.00 3.69
23 24 2.408271 ATGCGAGCAATTCAAGAGGA 57.592 45.000 0.57 0.00 0.00 3.71
24 25 1.730501 TGCGAGCAATTCAAGAGGAG 58.269 50.000 0.00 0.00 0.00 3.69
26 27 2.079925 GCGAGCAATTCAAGAGGAGTT 58.920 47.619 0.00 0.00 0.00 3.01
27 28 2.159599 GCGAGCAATTCAAGAGGAGTTG 60.160 50.000 0.00 0.00 43.82 3.16
28 29 2.417933 CGAGCAATTCAAGAGGAGTTGG 59.582 50.000 0.00 0.00 41.92 3.77
34 35 2.847327 TCAAGAGGAGTTGGCTTGAG 57.153 50.000 0.00 0.00 42.03 3.02
62 63 6.207213 GTCATCGATAAAGACGGACAATACT 58.793 40.000 0.00 0.00 31.82 2.12
63 64 6.142480 GTCATCGATAAAGACGGACAATACTG 59.858 42.308 0.00 0.00 31.82 2.74
76 77 4.385825 GACAATACTGTGTGGACCTTGAA 58.614 43.478 0.00 0.00 35.30 2.69
299 300 9.748708 GTCGAGTCCTCTCTATACGTATAATAT 57.251 37.037 15.80 0.00 38.45 1.28
637 645 2.099405 CAATAACCGGGACAAATGGCT 58.901 47.619 6.32 0.00 0.00 4.75
649 657 5.335976 GGGACAAATGGCTCTTTTTCTACTG 60.336 44.000 0.00 0.00 0.00 2.74
653 661 3.857157 TGGCTCTTTTTCTACTGGTGT 57.143 42.857 0.00 0.00 0.00 4.16
655 663 4.638304 TGGCTCTTTTTCTACTGGTGTAC 58.362 43.478 0.00 0.00 0.00 2.90
656 664 4.347000 TGGCTCTTTTTCTACTGGTGTACT 59.653 41.667 0.00 0.00 0.00 2.73
657 665 4.930405 GGCTCTTTTTCTACTGGTGTACTC 59.070 45.833 0.00 0.00 0.00 2.59
658 666 5.279556 GGCTCTTTTTCTACTGGTGTACTCT 60.280 44.000 0.00 0.00 0.00 3.24
660 668 7.376615 GCTCTTTTTCTACTGGTGTACTCTAA 58.623 38.462 0.00 0.00 0.00 2.10
661 669 8.035984 GCTCTTTTTCTACTGGTGTACTCTAAT 58.964 37.037 0.00 0.00 0.00 1.73
662 670 9.360093 CTCTTTTTCTACTGGTGTACTCTAATG 57.640 37.037 0.00 0.00 0.00 1.90
663 671 8.867097 TCTTTTTCTACTGGTGTACTCTAATGT 58.133 33.333 0.00 0.00 0.00 2.71
666 674 9.918630 TTTTCTACTGGTGTACTCTAATGTAAC 57.081 33.333 0.00 0.00 0.00 2.50
670 678 5.244626 ACTGGTGTACTCTAATGTAACGGTT 59.755 40.000 0.00 0.00 0.00 4.44
671 679 6.100404 TGGTGTACTCTAATGTAACGGTTT 57.900 37.500 0.00 0.00 0.00 3.27
672 680 6.158598 TGGTGTACTCTAATGTAACGGTTTC 58.841 40.000 0.00 0.00 0.00 2.78
673 681 5.578336 GGTGTACTCTAATGTAACGGTTTCC 59.422 44.000 0.00 0.00 0.00 3.13
674 682 6.393171 GTGTACTCTAATGTAACGGTTTCCT 58.607 40.000 0.00 0.00 0.00 3.36
675 683 6.309737 GTGTACTCTAATGTAACGGTTTCCTG 59.690 42.308 0.00 0.00 0.00 3.86
676 684 5.479124 ACTCTAATGTAACGGTTTCCTGT 57.521 39.130 0.00 0.00 0.00 4.00
677 685 5.235516 ACTCTAATGTAACGGTTTCCTGTG 58.764 41.667 0.00 0.00 0.00 3.66
678 686 5.011329 ACTCTAATGTAACGGTTTCCTGTGA 59.989 40.000 0.00 0.00 0.00 3.58
679 687 5.856156 TCTAATGTAACGGTTTCCTGTGAA 58.144 37.500 0.00 0.00 0.00 3.18
680 688 6.469410 TCTAATGTAACGGTTTCCTGTGAAT 58.531 36.000 0.00 0.00 0.00 2.57
682 690 6.490566 AATGTAACGGTTTCCTGTGAATAC 57.509 37.500 0.00 0.00 0.00 1.89
683 691 4.317488 TGTAACGGTTTCCTGTGAATACC 58.683 43.478 0.00 0.00 32.70 2.73
685 693 1.619827 ACGGTTTCCTGTGAATACCGA 59.380 47.619 23.08 0.00 46.44 4.69
686 694 2.235402 ACGGTTTCCTGTGAATACCGAT 59.765 45.455 23.08 12.42 46.44 4.18
687 695 2.607635 CGGTTTCCTGTGAATACCGATG 59.392 50.000 16.72 0.00 46.44 3.84
688 696 3.606687 GGTTTCCTGTGAATACCGATGT 58.393 45.455 0.00 0.00 0.00 3.06
690 698 4.250464 GTTTCCTGTGAATACCGATGTGA 58.750 43.478 0.00 0.00 0.00 3.58
691 699 4.753516 TTCCTGTGAATACCGATGTGAT 57.246 40.909 0.00 0.00 0.00 3.06
692 700 4.058721 TCCTGTGAATACCGATGTGATG 57.941 45.455 0.00 0.00 0.00 3.07
694 702 4.053983 CCTGTGAATACCGATGTGATGAG 58.946 47.826 0.00 0.00 0.00 2.90
695 703 3.457234 TGTGAATACCGATGTGATGAGC 58.543 45.455 0.00 0.00 0.00 4.26
696 704 2.802816 GTGAATACCGATGTGATGAGCC 59.197 50.000 0.00 0.00 0.00 4.70
697 705 2.224281 TGAATACCGATGTGATGAGCCC 60.224 50.000 0.00 0.00 0.00 5.19
698 706 0.318441 ATACCGATGTGATGAGCCCG 59.682 55.000 0.00 0.00 0.00 6.13
699 707 1.040893 TACCGATGTGATGAGCCCGT 61.041 55.000 0.00 0.00 0.00 5.28
700 708 1.040893 ACCGATGTGATGAGCCCGTA 61.041 55.000 0.00 0.00 0.00 4.02
807 2616 6.718454 CCATCAGGCAACCATATATTTCTTCT 59.282 38.462 0.00 0.00 37.17 2.85
816 2625 8.712363 CAACCATATATTTCTTCTATCCACACG 58.288 37.037 0.00 0.00 0.00 4.49
817 2626 7.963532 ACCATATATTTCTTCTATCCACACGT 58.036 34.615 0.00 0.00 0.00 4.49
818 2627 7.872993 ACCATATATTTCTTCTATCCACACGTG 59.127 37.037 15.48 15.48 0.00 4.49
819 2628 8.088365 CCATATATTTCTTCTATCCACACGTGA 58.912 37.037 25.01 0.00 0.00 4.35
820 2629 9.133627 CATATATTTCTTCTATCCACACGTGAG 57.866 37.037 25.01 15.20 0.00 3.51
821 2630 3.868757 TTCTTCTATCCACACGTGAGG 57.131 47.619 24.28 24.28 0.00 3.86
822 2631 2.100197 TCTTCTATCCACACGTGAGGG 58.900 52.381 28.38 24.04 43.28 4.30
823 2632 1.137086 CTTCTATCCACACGTGAGGGG 59.863 57.143 28.38 21.79 40.46 4.79
824 2633 0.333652 TCTATCCACACGTGAGGGGA 59.666 55.000 28.38 25.54 40.46 4.81
825 2634 1.191535 CTATCCACACGTGAGGGGAA 58.808 55.000 28.38 12.66 40.46 3.97
826 2635 1.137086 CTATCCACACGTGAGGGGAAG 59.863 57.143 28.38 19.32 40.46 3.46
827 2636 0.544357 ATCCACACGTGAGGGGAAGA 60.544 55.000 28.38 11.95 40.46 2.87
828 2637 0.544357 TCCACACGTGAGGGGAAGAT 60.544 55.000 28.38 0.00 40.46 2.40
1146 2995 1.691482 GGTAGCCTCCACCACATCCTA 60.691 57.143 0.00 0.00 36.01 2.94
1228 3077 4.862823 AGCTAGGCGAGGTCCCCC 62.863 72.222 0.00 0.00 0.00 5.40
1275 3124 3.365265 GCCCAGGTGTTCAAGGCG 61.365 66.667 0.00 0.00 33.18 5.52
1482 3331 1.135094 ACCTCATCCGCTCCATCAAT 58.865 50.000 0.00 0.00 0.00 2.57
2136 4689 2.744202 CCGTTCGTAGTAGGTACACTGT 59.256 50.000 0.00 0.00 0.00 3.55
2197 4751 6.091441 GCAACAGGTATGAGAGTACAGAAAAG 59.909 42.308 0.00 0.00 0.00 2.27
2416 5285 7.278868 CAGAACTCATAAGACACCCTAATGTTC 59.721 40.741 0.00 0.00 31.24 3.18
2641 5511 4.668576 TTCATCAATGTCTTCGCAACTC 57.331 40.909 0.00 0.00 0.00 3.01
2642 5512 3.663025 TCATCAATGTCTTCGCAACTCA 58.337 40.909 0.00 0.00 0.00 3.41
3055 5925 4.662179 AGAGGAGCTCATGGGATAATTTGA 59.338 41.667 17.19 0.00 32.06 2.69
3142 6012 4.735369 AGCAGCTACTATGTATCACCTCT 58.265 43.478 0.00 0.00 0.00 3.69
3369 6400 4.652421 TTCTTGCTTCTGATGTTTGCAA 57.348 36.364 0.00 0.00 40.65 4.08
3407 6439 7.933215 ACTACCAACTTTCTTAACACAAACT 57.067 32.000 0.00 0.00 0.00 2.66
3409 6441 9.623000 ACTACCAACTTTCTTAACACAAACTAT 57.377 29.630 0.00 0.00 0.00 2.12
3475 6513 6.236017 ACATACAACACAAACTATTGGTCG 57.764 37.500 0.00 0.00 41.01 4.79
3500 6538 2.289274 CGACAGGCAACAACACATTACA 59.711 45.455 0.00 0.00 41.41 2.41
3525 6563 1.734465 GGCTTGACATCTCAGAAACCG 59.266 52.381 0.00 0.00 0.00 4.44
3531 6569 2.737252 GACATCTCAGAAACCGGTGAAC 59.263 50.000 8.52 2.35 0.00 3.18
3629 6668 8.950210 CATGAATGCCCGAGTATAATTTTCTAT 58.050 33.333 0.00 0.00 0.00 1.98
3635 6674 9.706691 TGCCCGAGTATAATTTTCTATAGAAAG 57.293 33.333 23.41 11.55 43.90 2.62
3723 6765 3.295973 ACTTATCTCTCTCACTCTGGCC 58.704 50.000 0.00 0.00 0.00 5.36
3724 6766 1.974265 TATCTCTCTCACTCTGGCCG 58.026 55.000 0.00 0.00 0.00 6.13
3737 6779 1.486310 TCTGGCCGCATTAACTCATCT 59.514 47.619 0.00 0.00 0.00 2.90
3749 6791 6.094603 GCATTAACTCATCTTTGACCTCATGT 59.905 38.462 0.00 0.00 0.00 3.21
3758 6800 9.177608 TCATCTTTGACCTCATGTAAAATAAGG 57.822 33.333 0.00 0.00 0.00 2.69
3759 6801 7.391148 TCTTTGACCTCATGTAAAATAAGGC 57.609 36.000 0.00 0.00 0.00 4.35
3760 6802 5.811399 TTGACCTCATGTAAAATAAGGCG 57.189 39.130 0.00 0.00 0.00 5.52
3761 6803 4.839121 TGACCTCATGTAAAATAAGGCGT 58.161 39.130 0.00 0.00 0.00 5.68
3762 6804 4.873827 TGACCTCATGTAAAATAAGGCGTC 59.126 41.667 0.00 0.00 0.00 5.19
3763 6805 5.099042 ACCTCATGTAAAATAAGGCGTCT 57.901 39.130 0.00 0.00 0.00 4.18
3764 6806 5.116882 ACCTCATGTAAAATAAGGCGTCTC 58.883 41.667 0.00 0.00 0.00 3.36
3765 6807 4.209288 CCTCATGTAAAATAAGGCGTCTCG 59.791 45.833 0.00 0.00 0.00 4.04
3766 6808 5.001237 TCATGTAAAATAAGGCGTCTCGA 57.999 39.130 0.00 0.00 0.00 4.04
3767 6809 4.802039 TCATGTAAAATAAGGCGTCTCGAC 59.198 41.667 0.00 0.00 33.59 4.20
3768 6810 3.514645 TGTAAAATAAGGCGTCTCGACC 58.485 45.455 0.00 0.00 34.11 4.79
3769 6811 2.754946 AAAATAAGGCGTCTCGACCA 57.245 45.000 0.00 0.00 34.11 4.02
3770 6812 2.981859 AAATAAGGCGTCTCGACCAT 57.018 45.000 0.00 0.00 34.11 3.55
3771 6813 2.225068 AATAAGGCGTCTCGACCATG 57.775 50.000 0.00 0.00 34.11 3.66
3772 6814 1.399714 ATAAGGCGTCTCGACCATGA 58.600 50.000 0.00 0.00 34.11 3.07
3773 6815 0.738975 TAAGGCGTCTCGACCATGAG 59.261 55.000 0.00 0.00 34.11 2.90
3774 6816 0.965866 AAGGCGTCTCGACCATGAGA 60.966 55.000 0.00 0.00 42.56 3.27
3775 6817 0.753479 AGGCGTCTCGACCATGAGAT 60.753 55.000 0.00 0.00 46.07 2.75
3776 6818 0.318275 GGCGTCTCGACCATGAGATC 60.318 60.000 0.00 0.00 46.07 2.75
3777 6819 0.382158 GCGTCTCGACCATGAGATCA 59.618 55.000 0.00 0.00 46.07 2.92
3778 6820 1.000827 GCGTCTCGACCATGAGATCAT 60.001 52.381 0.00 0.00 46.07 2.45
3790 6832 5.602458 CATGAGATCATGTAACAATCCCG 57.398 43.478 13.55 0.00 46.40 5.14
3791 6833 4.753516 TGAGATCATGTAACAATCCCGT 57.246 40.909 0.00 0.00 0.00 5.28
3792 6834 5.862678 TGAGATCATGTAACAATCCCGTA 57.137 39.130 0.00 0.00 0.00 4.02
3793 6835 5.597806 TGAGATCATGTAACAATCCCGTAC 58.402 41.667 0.00 0.00 0.00 3.67
3794 6836 4.957296 AGATCATGTAACAATCCCGTACC 58.043 43.478 0.00 0.00 0.00 3.34
3795 6837 3.167921 TCATGTAACAATCCCGTACCG 57.832 47.619 0.00 0.00 0.00 4.02
3797 6839 1.265236 TGTAACAATCCCGTACCGGT 58.735 50.000 13.98 13.98 46.80 5.28
3798 6840 1.204467 TGTAACAATCCCGTACCGGTC 59.796 52.381 12.40 1.44 46.80 4.79
3799 6841 1.478105 GTAACAATCCCGTACCGGTCT 59.522 52.381 12.40 0.00 46.80 3.85
3800 6842 0.978907 AACAATCCCGTACCGGTCTT 59.021 50.000 12.40 0.00 46.80 3.01
3801 6843 1.851304 ACAATCCCGTACCGGTCTTA 58.149 50.000 12.40 0.00 46.80 2.10
3802 6844 1.753073 ACAATCCCGTACCGGTCTTAG 59.247 52.381 12.40 0.14 46.80 2.18
3803 6845 2.026641 CAATCCCGTACCGGTCTTAGA 58.973 52.381 12.40 4.85 46.80 2.10
3804 6846 2.428171 CAATCCCGTACCGGTCTTAGAA 59.572 50.000 12.40 0.00 46.80 2.10
3805 6847 1.463674 TCCCGTACCGGTCTTAGAAC 58.536 55.000 12.40 0.35 46.80 3.01
3806 6848 1.004745 TCCCGTACCGGTCTTAGAACT 59.995 52.381 12.40 0.00 46.80 3.01
3807 6849 1.403323 CCCGTACCGGTCTTAGAACTC 59.597 57.143 12.40 0.00 46.80 3.01
3808 6850 2.086869 CCGTACCGGTCTTAGAACTCA 58.913 52.381 12.40 0.00 42.73 3.41
3809 6851 2.686915 CCGTACCGGTCTTAGAACTCAT 59.313 50.000 12.40 0.00 42.73 2.90
3810 6852 3.129988 CCGTACCGGTCTTAGAACTCATT 59.870 47.826 12.40 0.00 42.73 2.57
3811 6853 4.103357 CGTACCGGTCTTAGAACTCATTG 58.897 47.826 12.40 0.00 0.00 2.82
3812 6854 4.142534 CGTACCGGTCTTAGAACTCATTGA 60.143 45.833 12.40 0.00 0.00 2.57
3813 6855 4.189639 ACCGGTCTTAGAACTCATTGAC 57.810 45.455 0.00 0.00 0.00 3.18
3814 6856 3.056035 ACCGGTCTTAGAACTCATTGACC 60.056 47.826 0.00 0.00 40.16 4.02
3816 6858 4.189639 GGTCTTAGAACTCATTGACCGT 57.810 45.455 0.00 0.00 35.34 4.83
3817 6859 4.174762 GGTCTTAGAACTCATTGACCGTC 58.825 47.826 0.00 0.00 35.34 4.79
3818 6860 4.174762 GTCTTAGAACTCATTGACCGTCC 58.825 47.826 0.00 0.00 0.00 4.79
3819 6861 2.933495 TAGAACTCATTGACCGTCCG 57.067 50.000 0.00 0.00 0.00 4.79
3820 6862 1.254026 AGAACTCATTGACCGTCCGA 58.746 50.000 0.00 0.00 0.00 4.55
3821 6863 1.202582 AGAACTCATTGACCGTCCGAG 59.797 52.381 0.00 2.53 0.00 4.63
3822 6864 0.389948 AACTCATTGACCGTCCGAGC 60.390 55.000 8.78 0.00 0.00 5.03
3823 6865 1.874019 CTCATTGACCGTCCGAGCG 60.874 63.158 0.00 0.00 0.00 5.03
3824 6866 2.180769 CATTGACCGTCCGAGCGA 59.819 61.111 0.00 0.00 0.00 4.93
3825 6867 1.226974 CATTGACCGTCCGAGCGAT 60.227 57.895 0.00 0.00 0.00 4.58
3826 6868 1.065928 ATTGACCGTCCGAGCGATC 59.934 57.895 0.00 0.00 0.00 3.69
3827 6869 1.663379 ATTGACCGTCCGAGCGATCA 61.663 55.000 0.00 0.00 31.77 2.92
3828 6870 2.024871 GACCGTCCGAGCGATCAG 59.975 66.667 0.00 0.00 0.00 2.90
3829 6871 3.471244 GACCGTCCGAGCGATCAGG 62.471 68.421 0.00 3.17 0.00 3.86
3830 6872 4.933064 CCGTCCGAGCGATCAGGC 62.933 72.222 0.00 0.00 0.00 4.85
3831 6873 4.193334 CGTCCGAGCGATCAGGCA 62.193 66.667 0.00 0.00 34.64 4.75
3832 6874 2.279120 GTCCGAGCGATCAGGCAG 60.279 66.667 0.00 0.00 34.64 4.85
3833 6875 3.531207 TCCGAGCGATCAGGCAGG 61.531 66.667 0.00 0.00 35.27 4.85
3834 6876 4.598894 CCGAGCGATCAGGCAGGG 62.599 72.222 0.00 0.00 34.64 4.45
3836 6878 3.859414 GAGCGATCAGGCAGGGCT 61.859 66.667 0.00 0.00 36.51 5.19
3837 6879 3.805891 GAGCGATCAGGCAGGGCTC 62.806 68.421 0.00 1.55 42.68 4.70
3838 6880 4.925861 GCGATCAGGCAGGGCTCC 62.926 72.222 0.00 0.00 0.00 4.70
3839 6881 3.160047 CGATCAGGCAGGGCTCCT 61.160 66.667 0.00 0.00 0.00 3.69
3840 6882 2.739996 CGATCAGGCAGGGCTCCTT 61.740 63.158 0.00 0.00 0.00 3.36
3841 6883 1.153005 GATCAGGCAGGGCTCCTTG 60.153 63.158 0.00 0.00 0.00 3.61
3842 6884 1.617536 ATCAGGCAGGGCTCCTTGA 60.618 57.895 1.90 0.00 0.00 3.02
3843 6885 0.992431 ATCAGGCAGGGCTCCTTGAT 60.992 55.000 1.90 0.00 0.00 2.57
3844 6886 0.326522 TCAGGCAGGGCTCCTTGATA 60.327 55.000 1.90 0.00 0.00 2.15
3845 6887 0.548031 CAGGCAGGGCTCCTTGATAA 59.452 55.000 1.90 0.00 0.00 1.75
3846 6888 0.548510 AGGCAGGGCTCCTTGATAAC 59.451 55.000 1.90 0.00 0.00 1.89
3847 6889 0.466372 GGCAGGGCTCCTTGATAACC 60.466 60.000 1.90 0.00 0.00 2.85
3848 6890 0.466372 GCAGGGCTCCTTGATAACCC 60.466 60.000 1.90 0.00 41.17 4.11
3849 6891 0.918983 CAGGGCTCCTTGATAACCCA 59.081 55.000 0.00 0.00 43.47 4.51
3850 6892 0.919710 AGGGCTCCTTGATAACCCAC 59.080 55.000 0.00 0.00 43.47 4.61
3851 6893 0.623723 GGGCTCCTTGATAACCCACA 59.376 55.000 0.00 0.00 40.52 4.17
3852 6894 1.005450 GGGCTCCTTGATAACCCACAA 59.995 52.381 0.00 0.00 40.52 3.33
3853 6895 2.556559 GGGCTCCTTGATAACCCACAAA 60.557 50.000 0.00 0.00 40.52 2.83
3854 6896 3.365472 GGCTCCTTGATAACCCACAAAT 58.635 45.455 0.00 0.00 0.00 2.32
3855 6897 4.532834 GGCTCCTTGATAACCCACAAATA 58.467 43.478 0.00 0.00 0.00 1.40
3856 6898 5.140454 GGCTCCTTGATAACCCACAAATAT 58.860 41.667 0.00 0.00 0.00 1.28
3857 6899 5.598417 GGCTCCTTGATAACCCACAAATATT 59.402 40.000 0.00 0.00 0.00 1.28
3858 6900 6.461509 GGCTCCTTGATAACCCACAAATATTG 60.462 42.308 0.00 0.00 0.00 1.90
3859 6901 6.461509 GCTCCTTGATAACCCACAAATATTGG 60.462 42.308 0.00 0.00 34.12 3.16
3867 6909 2.686558 CACAAATATTGGGGATCGCG 57.313 50.000 0.00 0.00 34.12 5.87
3868 6910 2.217750 CACAAATATTGGGGATCGCGA 58.782 47.619 13.09 13.09 34.12 5.87
3869 6911 2.813754 CACAAATATTGGGGATCGCGAT 59.186 45.455 23.97 23.97 34.12 4.58
3870 6912 4.000325 CACAAATATTGGGGATCGCGATA 59.000 43.478 23.76 6.23 34.12 2.92
3871 6913 4.093408 CACAAATATTGGGGATCGCGATAG 59.907 45.833 23.76 3.05 34.12 2.08
3872 6914 4.253685 CAAATATTGGGGATCGCGATAGT 58.746 43.478 23.76 5.68 39.35 2.12
3873 6915 3.802948 ATATTGGGGATCGCGATAGTC 57.197 47.619 23.76 10.95 39.35 2.59
3874 6916 1.633774 ATTGGGGATCGCGATAGTCT 58.366 50.000 23.76 0.00 39.35 3.24
3875 6917 1.410004 TTGGGGATCGCGATAGTCTT 58.590 50.000 23.76 0.00 39.35 3.01
3876 6918 0.959553 TGGGGATCGCGATAGTCTTC 59.040 55.000 23.76 9.28 39.35 2.87
3877 6919 0.109689 GGGGATCGCGATAGTCTTCG 60.110 60.000 23.76 0.00 41.99 3.79
3878 6920 0.873054 GGGATCGCGATAGTCTTCGA 59.127 55.000 23.76 0.00 41.62 3.71
3879 6921 1.135916 GGGATCGCGATAGTCTTCGAG 60.136 57.143 23.76 5.59 41.62 4.04
3880 6922 1.135916 GGATCGCGATAGTCTTCGAGG 60.136 57.143 23.76 0.00 41.62 4.63
3881 6923 0.875728 ATCGCGATAGTCTTCGAGGG 59.124 55.000 22.33 0.00 41.62 4.30
3882 6924 0.463295 TCGCGATAGTCTTCGAGGGT 60.463 55.000 3.71 0.00 41.62 4.34
3883 6925 1.202568 TCGCGATAGTCTTCGAGGGTA 60.203 52.381 3.71 0.00 41.62 3.69
3884 6926 1.194997 CGCGATAGTCTTCGAGGGTAG 59.805 57.143 0.00 0.00 41.62 3.18
3885 6927 2.220313 GCGATAGTCTTCGAGGGTAGT 58.780 52.381 0.00 0.00 41.62 2.73
3886 6928 3.397482 GCGATAGTCTTCGAGGGTAGTA 58.603 50.000 0.00 0.00 41.62 1.82
3887 6929 4.002316 GCGATAGTCTTCGAGGGTAGTAT 58.998 47.826 0.00 0.00 41.62 2.12
3888 6930 4.455190 GCGATAGTCTTCGAGGGTAGTATT 59.545 45.833 0.00 0.00 41.62 1.89
3889 6931 5.048852 GCGATAGTCTTCGAGGGTAGTATTT 60.049 44.000 0.00 0.00 41.62 1.40
3890 6932 6.601264 CGATAGTCTTCGAGGGTAGTATTTC 58.399 44.000 0.00 0.00 41.62 2.17
3891 6933 6.204301 CGATAGTCTTCGAGGGTAGTATTTCA 59.796 42.308 0.00 0.00 41.62 2.69
3892 6934 5.579564 AGTCTTCGAGGGTAGTATTTCAC 57.420 43.478 0.00 0.00 0.00 3.18
3893 6935 4.401837 AGTCTTCGAGGGTAGTATTTCACC 59.598 45.833 0.00 0.00 0.00 4.02
3909 6951 9.801873 AGTATTTCACCCAAATTTATTGATTCG 57.198 29.630 0.00 0.00 36.09 3.34
3910 6952 9.796120 GTATTTCACCCAAATTTATTGATTCGA 57.204 29.630 0.00 0.00 36.09 3.71
3911 6953 8.702163 ATTTCACCCAAATTTATTGATTCGAC 57.298 30.769 0.00 0.00 29.60 4.20
3912 6954 6.825944 TCACCCAAATTTATTGATTCGACA 57.174 33.333 0.00 0.00 0.00 4.35
3913 6955 6.616947 TCACCCAAATTTATTGATTCGACAC 58.383 36.000 0.00 0.00 0.00 3.67
3914 6956 6.432783 TCACCCAAATTTATTGATTCGACACT 59.567 34.615 0.00 0.00 0.00 3.55
3915 6957 7.608376 TCACCCAAATTTATTGATTCGACACTA 59.392 33.333 0.00 0.00 0.00 2.74
3916 6958 7.910162 CACCCAAATTTATTGATTCGACACTAG 59.090 37.037 0.00 0.00 0.00 2.57
3917 6959 7.067008 ACCCAAATTTATTGATTCGACACTAGG 59.933 37.037 0.00 0.00 0.00 3.02
3918 6960 7.417612 CCAAATTTATTGATTCGACACTAGGG 58.582 38.462 0.00 0.00 0.00 3.53
3919 6961 7.417612 CAAATTTATTGATTCGACACTAGGGG 58.582 38.462 0.00 0.00 0.00 4.79
3920 6962 5.943349 TTTATTGATTCGACACTAGGGGA 57.057 39.130 0.00 0.00 0.00 4.81
3921 6963 5.531122 TTATTGATTCGACACTAGGGGAG 57.469 43.478 0.00 0.00 0.00 4.30
3922 6964 2.526888 TGATTCGACACTAGGGGAGT 57.473 50.000 0.00 0.00 39.82 3.85
3923 6965 2.376109 TGATTCGACACTAGGGGAGTC 58.624 52.381 0.00 0.00 35.64 3.36
3924 6966 2.291346 TGATTCGACACTAGGGGAGTCA 60.291 50.000 0.00 0.00 35.64 3.41
3925 6967 2.297698 TTCGACACTAGGGGAGTCAA 57.702 50.000 0.00 0.00 35.64 3.18
3926 6968 2.297698 TCGACACTAGGGGAGTCAAA 57.702 50.000 0.00 0.00 35.64 2.69
3927 6969 2.168496 TCGACACTAGGGGAGTCAAAG 58.832 52.381 0.00 0.00 35.64 2.77
3928 6970 2.168496 CGACACTAGGGGAGTCAAAGA 58.832 52.381 0.00 0.00 35.64 2.52
3929 6971 2.561419 CGACACTAGGGGAGTCAAAGAA 59.439 50.000 0.00 0.00 35.64 2.52
3930 6972 3.195825 CGACACTAGGGGAGTCAAAGAAT 59.804 47.826 0.00 0.00 35.64 2.40
3931 6973 4.401519 CGACACTAGGGGAGTCAAAGAATA 59.598 45.833 0.00 0.00 35.64 1.75
3932 6974 5.069251 CGACACTAGGGGAGTCAAAGAATAT 59.931 44.000 0.00 0.00 35.64 1.28
3933 6975 6.407074 CGACACTAGGGGAGTCAAAGAATATT 60.407 42.308 0.00 0.00 35.64 1.28
3934 6976 7.272144 ACACTAGGGGAGTCAAAGAATATTT 57.728 36.000 0.00 0.00 35.64 1.40
3935 6977 8.388656 ACACTAGGGGAGTCAAAGAATATTTA 57.611 34.615 0.00 0.00 35.64 1.40
3936 6978 9.004231 ACACTAGGGGAGTCAAAGAATATTTAT 57.996 33.333 0.00 0.00 35.64 1.40
3937 6979 9.277783 CACTAGGGGAGTCAAAGAATATTTATG 57.722 37.037 0.00 0.00 35.64 1.90
3938 6980 9.225682 ACTAGGGGAGTCAAAGAATATTTATGA 57.774 33.333 0.00 0.00 29.95 2.15
3939 6981 9.717942 CTAGGGGAGTCAAAGAATATTTATGAG 57.282 37.037 0.00 0.00 0.00 2.90
3940 6982 8.107196 AGGGGAGTCAAAGAATATTTATGAGT 57.893 34.615 0.00 6.27 0.00 3.41
3941 6983 8.214364 AGGGGAGTCAAAGAATATTTATGAGTC 58.786 37.037 17.27 17.27 38.92 3.36
3942 6984 8.214364 GGGGAGTCAAAGAATATTTATGAGTCT 58.786 37.037 21.06 9.46 39.37 3.24
3943 6985 9.620259 GGGAGTCAAAGAATATTTATGAGTCTT 57.380 33.333 21.06 6.04 39.37 3.01
3957 6999 9.726438 ATTTATGAGTCTTAGCAGTTTAGTTGT 57.274 29.630 0.00 0.00 0.00 3.32
3958 7000 8.758633 TTATGAGTCTTAGCAGTTTAGTTGTC 57.241 34.615 0.00 0.00 0.00 3.18
3959 7001 6.156748 TGAGTCTTAGCAGTTTAGTTGTCA 57.843 37.500 0.00 0.00 0.00 3.58
3960 7002 6.578944 TGAGTCTTAGCAGTTTAGTTGTCAA 58.421 36.000 0.00 0.00 0.00 3.18
3961 7003 7.217200 TGAGTCTTAGCAGTTTAGTTGTCAAT 58.783 34.615 0.00 0.00 0.00 2.57
3962 7004 7.715249 TGAGTCTTAGCAGTTTAGTTGTCAATT 59.285 33.333 0.00 0.00 0.00 2.32
3963 7005 8.089115 AGTCTTAGCAGTTTAGTTGTCAATTC 57.911 34.615 0.00 0.00 0.00 2.17
3964 7006 7.715249 AGTCTTAGCAGTTTAGTTGTCAATTCA 59.285 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.811497 CCTCTTGAATTGCTCGCATATGA 59.189 43.478 6.97 0.00 0.00 2.15
1 2 3.811497 TCCTCTTGAATTGCTCGCATATG 59.189 43.478 0.00 0.00 0.00 1.78
2 3 4.063689 CTCCTCTTGAATTGCTCGCATAT 58.936 43.478 0.00 0.00 0.00 1.78
4 5 2.286872 CTCCTCTTGAATTGCTCGCAT 58.713 47.619 0.00 0.00 0.00 4.73
7 8 2.417933 CCAACTCCTCTTGAATTGCTCG 59.582 50.000 0.00 0.00 0.00 5.03
8 9 2.163211 GCCAACTCCTCTTGAATTGCTC 59.837 50.000 0.00 0.00 0.00 4.26
9 10 2.165998 GCCAACTCCTCTTGAATTGCT 58.834 47.619 0.00 0.00 0.00 3.91
10 11 2.165998 AGCCAACTCCTCTTGAATTGC 58.834 47.619 0.00 0.00 0.00 3.56
11 12 3.822735 TCAAGCCAACTCCTCTTGAATTG 59.177 43.478 1.88 0.00 42.00 2.32
12 13 4.077822 CTCAAGCCAACTCCTCTTGAATT 58.922 43.478 5.57 0.00 43.60 2.17
13 14 3.683802 CTCAAGCCAACTCCTCTTGAAT 58.316 45.455 5.57 0.00 43.60 2.57
14 15 2.811873 GCTCAAGCCAACTCCTCTTGAA 60.812 50.000 5.57 0.00 43.60 2.69
15 16 1.271054 GCTCAAGCCAACTCCTCTTGA 60.271 52.381 0.00 0.00 42.51 3.02
17 18 0.767375 TGCTCAAGCCAACTCCTCTT 59.233 50.000 0.00 0.00 41.18 2.85
18 19 0.036022 GTGCTCAAGCCAACTCCTCT 59.964 55.000 0.00 0.00 41.18 3.69
19 20 1.294659 CGTGCTCAAGCCAACTCCTC 61.295 60.000 0.00 0.00 41.18 3.71
20 21 1.302033 CGTGCTCAAGCCAACTCCT 60.302 57.895 0.00 0.00 41.18 3.69
21 22 1.569479 GACGTGCTCAAGCCAACTCC 61.569 60.000 0.00 0.00 41.18 3.85
22 23 0.880278 TGACGTGCTCAAGCCAACTC 60.880 55.000 0.00 0.00 41.18 3.01
23 24 0.250467 ATGACGTGCTCAAGCCAACT 60.250 50.000 0.00 0.00 41.18 3.16
24 25 0.166814 GATGACGTGCTCAAGCCAAC 59.833 55.000 0.00 0.00 41.18 3.77
26 27 1.737735 CGATGACGTGCTCAAGCCA 60.738 57.895 0.00 0.00 41.18 4.75
27 28 0.807667 ATCGATGACGTGCTCAAGCC 60.808 55.000 0.00 0.00 40.69 4.35
28 29 1.840181 TATCGATGACGTGCTCAAGC 58.160 50.000 8.54 0.00 40.69 4.01
34 35 2.886324 CGTCTTTATCGATGACGTGC 57.114 50.000 21.93 5.27 45.57 5.34
56 57 5.473162 TGAATTCAAGGTCCACACAGTATTG 59.527 40.000 5.45 0.00 0.00 1.90
299 300 0.166597 CTTGGTCGACGTACGCTACA 59.833 55.000 16.72 4.90 42.26 2.74
459 466 0.528901 CGGGATCAATACGCGTCCAA 60.529 55.000 18.63 0.00 38.51 3.53
467 474 1.021968 GCACCAACCGGGATCAATAC 58.978 55.000 6.32 0.00 41.15 1.89
473 480 4.360405 GGTGGCACCAACCGGGAT 62.360 66.667 31.26 0.00 38.42 3.85
637 645 8.867097 ACATTAGAGTACACCAGTAGAAAAAGA 58.133 33.333 0.00 0.00 0.00 2.52
649 657 5.578336 GGAAACCGTTACATTAGAGTACACC 59.422 44.000 0.00 0.00 0.00 4.16
653 661 6.209192 TCACAGGAAACCGTTACATTAGAGTA 59.791 38.462 0.00 0.00 0.00 2.59
655 663 5.475719 TCACAGGAAACCGTTACATTAGAG 58.524 41.667 0.00 0.00 0.00 2.43
656 664 5.471556 TCACAGGAAACCGTTACATTAGA 57.528 39.130 0.00 0.00 0.00 2.10
657 665 6.737254 ATTCACAGGAAACCGTTACATTAG 57.263 37.500 0.00 0.00 36.43 1.73
658 666 6.594937 GGTATTCACAGGAAACCGTTACATTA 59.405 38.462 0.00 0.00 36.43 1.90
660 668 4.939439 GGTATTCACAGGAAACCGTTACAT 59.061 41.667 0.00 0.00 36.43 2.29
661 669 4.317488 GGTATTCACAGGAAACCGTTACA 58.683 43.478 0.00 0.00 36.43 2.41
662 670 3.368843 CGGTATTCACAGGAAACCGTTAC 59.631 47.826 16.08 1.93 44.02 2.50
663 671 3.257873 TCGGTATTCACAGGAAACCGTTA 59.742 43.478 20.01 8.47 46.23 3.18
664 672 2.037511 TCGGTATTCACAGGAAACCGTT 59.962 45.455 20.01 0.00 46.23 4.44
665 673 1.619827 TCGGTATTCACAGGAAACCGT 59.380 47.619 20.01 0.00 46.23 4.83
666 674 2.373540 TCGGTATTCACAGGAAACCG 57.626 50.000 17.24 17.24 46.79 4.44
670 678 4.161377 TCATCACATCGGTATTCACAGGAA 59.839 41.667 0.00 0.00 37.45 3.36
671 679 3.704061 TCATCACATCGGTATTCACAGGA 59.296 43.478 0.00 0.00 0.00 3.86
672 680 4.053983 CTCATCACATCGGTATTCACAGG 58.946 47.826 0.00 0.00 0.00 4.00
673 681 3.492383 GCTCATCACATCGGTATTCACAG 59.508 47.826 0.00 0.00 0.00 3.66
674 682 3.457234 GCTCATCACATCGGTATTCACA 58.543 45.455 0.00 0.00 0.00 3.58
675 683 2.802816 GGCTCATCACATCGGTATTCAC 59.197 50.000 0.00 0.00 0.00 3.18
676 684 2.224281 GGGCTCATCACATCGGTATTCA 60.224 50.000 0.00 0.00 0.00 2.57
677 685 2.417719 GGGCTCATCACATCGGTATTC 58.582 52.381 0.00 0.00 0.00 1.75
678 686 1.270305 CGGGCTCATCACATCGGTATT 60.270 52.381 0.00 0.00 0.00 1.89
679 687 0.318441 CGGGCTCATCACATCGGTAT 59.682 55.000 0.00 0.00 0.00 2.73
680 688 1.040893 ACGGGCTCATCACATCGGTA 61.041 55.000 0.00 0.00 0.00 4.02
682 690 0.318441 ATACGGGCTCATCACATCGG 59.682 55.000 0.00 0.00 0.00 4.18
683 691 1.270826 AGATACGGGCTCATCACATCG 59.729 52.381 0.00 0.00 0.00 3.84
684 692 3.062763 CAAGATACGGGCTCATCACATC 58.937 50.000 0.00 0.00 0.00 3.06
685 693 2.224378 CCAAGATACGGGCTCATCACAT 60.224 50.000 0.00 0.00 0.00 3.21
686 694 1.138859 CCAAGATACGGGCTCATCACA 59.861 52.381 0.00 0.00 0.00 3.58
687 695 1.139058 ACCAAGATACGGGCTCATCAC 59.861 52.381 0.00 0.00 0.00 3.06
688 696 1.138859 CACCAAGATACGGGCTCATCA 59.861 52.381 0.00 0.00 0.00 3.07
690 698 1.496060 TCACCAAGATACGGGCTCAT 58.504 50.000 0.00 0.00 0.00 2.90
691 699 1.271856 TTCACCAAGATACGGGCTCA 58.728 50.000 0.00 0.00 0.00 4.26
692 700 2.213499 CATTCACCAAGATACGGGCTC 58.787 52.381 0.00 0.00 0.00 4.70
694 702 1.670811 CACATTCACCAAGATACGGGC 59.329 52.381 0.00 0.00 0.00 6.13
695 703 2.936498 GACACATTCACCAAGATACGGG 59.064 50.000 0.00 0.00 0.00 5.28
696 704 3.618594 CAGACACATTCACCAAGATACGG 59.381 47.826 0.00 0.00 0.00 4.02
697 705 4.245660 ACAGACACATTCACCAAGATACG 58.754 43.478 0.00 0.00 0.00 3.06
698 706 4.327357 CGACAGACACATTCACCAAGATAC 59.673 45.833 0.00 0.00 0.00 2.24
699 707 4.494484 CGACAGACACATTCACCAAGATA 58.506 43.478 0.00 0.00 0.00 1.98
700 708 3.329386 CGACAGACACATTCACCAAGAT 58.671 45.455 0.00 0.00 0.00 2.40
807 2616 1.191535 CTTCCCCTCACGTGTGGATA 58.808 55.000 32.66 19.32 0.00 2.59
816 2625 0.615331 TCAGCACATCTTCCCCTCAC 59.385 55.000 0.00 0.00 0.00 3.51
817 2626 1.361204 TTCAGCACATCTTCCCCTCA 58.639 50.000 0.00 0.00 0.00 3.86
818 2627 2.489722 GTTTTCAGCACATCTTCCCCTC 59.510 50.000 0.00 0.00 0.00 4.30
819 2628 2.519013 GTTTTCAGCACATCTTCCCCT 58.481 47.619 0.00 0.00 0.00 4.79
820 2629 1.200020 CGTTTTCAGCACATCTTCCCC 59.800 52.381 0.00 0.00 0.00 4.81
821 2630 1.880027 ACGTTTTCAGCACATCTTCCC 59.120 47.619 0.00 0.00 0.00 3.97
822 2631 2.548057 TCACGTTTTCAGCACATCTTCC 59.452 45.455 0.00 0.00 0.00 3.46
823 2632 3.002246 TGTCACGTTTTCAGCACATCTTC 59.998 43.478 0.00 0.00 0.00 2.87
824 2633 2.942376 TGTCACGTTTTCAGCACATCTT 59.058 40.909 0.00 0.00 0.00 2.40
825 2634 2.545526 CTGTCACGTTTTCAGCACATCT 59.454 45.455 0.00 0.00 0.00 2.90
826 2635 2.349817 CCTGTCACGTTTTCAGCACATC 60.350 50.000 0.00 0.00 0.00 3.06
827 2636 1.603802 CCTGTCACGTTTTCAGCACAT 59.396 47.619 0.00 0.00 0.00 3.21
828 2637 1.013596 CCTGTCACGTTTTCAGCACA 58.986 50.000 0.00 0.00 0.00 4.57
1228 3077 1.226802 CGCTGGAGATCACCACGAG 60.227 63.158 20.79 9.51 36.96 4.18
1275 3124 0.179111 TCGACAGGGCGACATCATTC 60.179 55.000 0.00 0.00 35.01 2.67
1566 3433 3.276091 CGTGCGAACTTGCCACCA 61.276 61.111 0.00 0.00 0.00 4.17
2088 4620 5.670899 TCTGGTCCCATATCCCATATAACA 58.329 41.667 0.00 0.00 0.00 2.41
2136 4689 9.210329 TGTTCGCTATTTGTCTAATTAACTGAA 57.790 29.630 0.00 0.00 0.00 3.02
2416 5285 2.682893 CTAAGTGCGCCTTAGCCAG 58.317 57.895 23.58 10.53 44.56 4.85
2641 5511 2.553028 CCCAATATTGAGGATCCCGGTG 60.553 54.545 17.23 0.00 0.00 4.94
2642 5512 1.705186 CCCAATATTGAGGATCCCGGT 59.295 52.381 17.23 0.00 0.00 5.28
2996 5866 6.613755 AACATAAAGGTACAATATGCGACC 57.386 37.500 10.14 0.00 34.10 4.79
3142 6012 3.030291 GCATCCCCATAATTGGACACAA 58.970 45.455 0.00 0.00 46.92 3.33
3233 6104 4.746611 CCAAAAGAAAGAGTTGCATTGGTC 59.253 41.667 0.00 0.00 33.18 4.02
3438 6476 3.685836 TGTATGTCGTCGTGTAGATGG 57.314 47.619 0.00 0.00 36.53 3.51
3447 6485 5.756950 ATAGTTTGTGTTGTATGTCGTCG 57.243 39.130 0.00 0.00 0.00 5.12
3475 6513 2.331451 GTTGTTGCCTGTCGTGCC 59.669 61.111 0.00 0.00 0.00 5.01
3482 6520 3.706802 TGTGTAATGTGTTGTTGCCTG 57.293 42.857 0.00 0.00 0.00 4.85
3485 6523 3.233578 CCGATGTGTAATGTGTTGTTGC 58.766 45.455 0.00 0.00 0.00 4.17
3488 6526 2.778299 AGCCGATGTGTAATGTGTTGT 58.222 42.857 0.00 0.00 0.00 3.32
3500 6538 1.827344 TCTGAGATGTCAAGCCGATGT 59.173 47.619 0.00 0.00 30.14 3.06
3525 6563 1.009829 GATGTGGCGATGAGTTCACC 58.990 55.000 0.00 0.00 0.00 4.02
3531 6569 1.012086 CCAACAGATGTGGCGATGAG 58.988 55.000 0.00 0.00 0.00 2.90
3538 6576 0.883833 GGAGTTGCCAACAGATGTGG 59.116 55.000 10.69 0.00 36.34 4.17
3554 6592 4.944619 TGATGCAGGTAAGTAGATGGAG 57.055 45.455 0.00 0.00 0.00 3.86
3629 6668 5.001232 GTGCTGTTGTAATGGACCTTTCTA 58.999 41.667 0.00 0.00 0.00 2.10
3635 6674 1.519408 ACGTGCTGTTGTAATGGACC 58.481 50.000 0.00 0.00 0.00 4.46
3720 6762 2.682856 TCAAAGATGAGTTAATGCGGCC 59.317 45.455 0.00 0.00 0.00 6.13
3723 6765 4.631377 TGAGGTCAAAGATGAGTTAATGCG 59.369 41.667 0.00 0.00 35.88 4.73
3724 6766 6.094603 ACATGAGGTCAAAGATGAGTTAATGC 59.905 38.462 0.00 0.00 35.88 3.56
3737 6779 5.708230 ACGCCTTATTTTACATGAGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
3749 6791 3.872511 TGGTCGAGACGCCTTATTTTA 57.127 42.857 0.00 0.00 0.00 1.52
3757 6799 0.318275 GATCTCATGGTCGAGACGCC 60.318 60.000 0.00 0.00 44.59 5.68
3758 6800 0.382158 TGATCTCATGGTCGAGACGC 59.618 55.000 0.00 0.00 44.59 5.19
3769 6811 5.296151 ACGGGATTGTTACATGATCTCAT 57.704 39.130 0.00 0.00 36.96 2.90
3770 6812 4.753516 ACGGGATTGTTACATGATCTCA 57.246 40.909 0.00 0.00 0.00 3.27
3771 6813 4.989168 GGTACGGGATTGTTACATGATCTC 59.011 45.833 0.00 0.00 0.00 2.75
3772 6814 4.957296 GGTACGGGATTGTTACATGATCT 58.043 43.478 0.00 0.00 0.00 2.75
3790 6832 5.100943 GTCAATGAGTTCTAAGACCGGTAC 58.899 45.833 7.34 0.00 0.00 3.34
3791 6833 4.159135 GGTCAATGAGTTCTAAGACCGGTA 59.841 45.833 7.34 0.00 36.55 4.02
3792 6834 3.056035 GGTCAATGAGTTCTAAGACCGGT 60.056 47.826 6.92 6.92 36.55 5.28
3793 6835 3.522553 GGTCAATGAGTTCTAAGACCGG 58.477 50.000 0.00 0.00 36.55 5.28
3795 6837 4.174762 GACGGTCAATGAGTTCTAAGACC 58.825 47.826 2.62 0.00 41.53 3.85
3796 6838 4.174762 GGACGGTCAATGAGTTCTAAGAC 58.825 47.826 10.76 0.00 0.00 3.01
3797 6839 3.119602 CGGACGGTCAATGAGTTCTAAGA 60.120 47.826 10.76 0.00 0.00 2.10
3798 6840 3.119602 TCGGACGGTCAATGAGTTCTAAG 60.120 47.826 10.76 0.00 0.00 2.18
3799 6841 2.821378 TCGGACGGTCAATGAGTTCTAA 59.179 45.455 10.76 0.00 0.00 2.10
3800 6842 2.422479 CTCGGACGGTCAATGAGTTCTA 59.578 50.000 10.76 0.00 0.00 2.10
3801 6843 1.202582 CTCGGACGGTCAATGAGTTCT 59.797 52.381 10.76 0.00 0.00 3.01
3802 6844 1.630148 CTCGGACGGTCAATGAGTTC 58.370 55.000 10.76 0.00 0.00 3.01
3803 6845 0.389948 GCTCGGACGGTCAATGAGTT 60.390 55.000 18.94 0.00 0.00 3.01
3804 6846 1.215647 GCTCGGACGGTCAATGAGT 59.784 57.895 18.94 0.00 0.00 3.41
3805 6847 1.874019 CGCTCGGACGGTCAATGAG 60.874 63.158 10.76 13.75 0.00 2.90
3806 6848 1.663379 ATCGCTCGGACGGTCAATGA 61.663 55.000 10.76 3.84 0.00 2.57
3807 6849 1.209275 GATCGCTCGGACGGTCAATG 61.209 60.000 10.76 0.00 42.75 2.82
3808 6850 1.065928 GATCGCTCGGACGGTCAAT 59.934 57.895 10.76 0.00 42.75 2.57
3809 6851 2.488355 GATCGCTCGGACGGTCAA 59.512 61.111 10.76 0.00 42.75 3.18
3811 6853 2.024871 CTGATCGCTCGGACGGTC 59.975 66.667 0.00 0.00 43.52 4.79
3812 6854 3.518998 CCTGATCGCTCGGACGGT 61.519 66.667 0.00 0.00 0.00 4.83
3813 6855 4.933064 GCCTGATCGCTCGGACGG 62.933 72.222 0.00 0.00 0.00 4.79
3814 6856 4.193334 TGCCTGATCGCTCGGACG 62.193 66.667 0.00 0.00 0.00 4.79
3815 6857 2.279120 CTGCCTGATCGCTCGGAC 60.279 66.667 0.00 0.00 0.00 4.79
3816 6858 3.531207 CCTGCCTGATCGCTCGGA 61.531 66.667 0.00 0.00 0.00 4.55
3817 6859 4.598894 CCCTGCCTGATCGCTCGG 62.599 72.222 0.00 0.00 0.00 4.63
3819 6861 3.805891 GAGCCCTGCCTGATCGCTC 62.806 68.421 1.55 1.55 39.21 5.03
3820 6862 3.859414 GAGCCCTGCCTGATCGCT 61.859 66.667 0.00 0.00 0.00 4.93
3821 6863 4.925861 GGAGCCCTGCCTGATCGC 62.926 72.222 0.00 0.00 0.00 4.58
3822 6864 2.739996 AAGGAGCCCTGCCTGATCG 61.740 63.158 0.00 0.00 35.50 3.69
3823 6865 1.153005 CAAGGAGCCCTGCCTGATC 60.153 63.158 0.00 0.00 35.50 2.92
3824 6866 0.992431 ATCAAGGAGCCCTGCCTGAT 60.992 55.000 0.00 0.00 35.50 2.90
3825 6867 0.326522 TATCAAGGAGCCCTGCCTGA 60.327 55.000 0.00 0.00 35.50 3.86
3826 6868 0.548031 TTATCAAGGAGCCCTGCCTG 59.452 55.000 0.00 0.00 35.50 4.85
3827 6869 0.548510 GTTATCAAGGAGCCCTGCCT 59.451 55.000 0.00 0.00 37.35 4.75
3828 6870 0.466372 GGTTATCAAGGAGCCCTGCC 60.466 60.000 0.00 0.00 32.13 4.85
3829 6871 0.466372 GGGTTATCAAGGAGCCCTGC 60.466 60.000 0.00 0.00 36.49 4.85
3830 6872 0.918983 TGGGTTATCAAGGAGCCCTG 59.081 55.000 0.00 0.00 39.97 4.45
3831 6873 0.919710 GTGGGTTATCAAGGAGCCCT 59.080 55.000 0.00 0.00 39.97 5.19
3832 6874 0.623723 TGTGGGTTATCAAGGAGCCC 59.376 55.000 0.00 0.00 39.73 5.19
3833 6875 2.507407 TTGTGGGTTATCAAGGAGCC 57.493 50.000 0.00 0.00 0.00 4.70
3834 6876 6.461509 CCAATATTTGTGGGTTATCAAGGAGC 60.462 42.308 0.00 0.00 32.03 4.70
3835 6877 7.042797 CCAATATTTGTGGGTTATCAAGGAG 57.957 40.000 0.00 0.00 32.03 3.69
3847 6889 1.266718 CGCGATCCCCAATATTTGTGG 59.733 52.381 0.00 0.00 35.77 4.17
3848 6890 2.217750 TCGCGATCCCCAATATTTGTG 58.782 47.619 3.71 0.00 0.00 3.33
3849 6891 2.631160 TCGCGATCCCCAATATTTGT 57.369 45.000 3.71 0.00 0.00 2.83
3850 6892 4.253685 ACTATCGCGATCCCCAATATTTG 58.746 43.478 27.45 1.64 0.00 2.32
3851 6893 4.223032 AGACTATCGCGATCCCCAATATTT 59.777 41.667 27.45 0.00 0.00 1.40
3852 6894 3.769844 AGACTATCGCGATCCCCAATATT 59.230 43.478 27.45 0.00 0.00 1.28
3853 6895 3.366396 AGACTATCGCGATCCCCAATAT 58.634 45.455 27.45 0.71 0.00 1.28
3854 6896 2.803956 AGACTATCGCGATCCCCAATA 58.196 47.619 27.45 4.93 0.00 1.90
3855 6897 1.633774 AGACTATCGCGATCCCCAAT 58.366 50.000 27.45 2.48 0.00 3.16
3856 6898 1.340248 GAAGACTATCGCGATCCCCAA 59.660 52.381 27.45 6.61 0.00 4.12
3857 6899 0.959553 GAAGACTATCGCGATCCCCA 59.040 55.000 27.45 7.04 0.00 4.96
3858 6900 0.109689 CGAAGACTATCGCGATCCCC 60.110 60.000 27.45 15.02 35.85 4.81
3859 6901 0.873054 TCGAAGACTATCGCGATCCC 59.127 55.000 27.45 15.39 42.44 3.85
3860 6902 1.135916 CCTCGAAGACTATCGCGATCC 60.136 57.143 27.45 15.76 42.44 3.36
3861 6903 1.135916 CCCTCGAAGACTATCGCGATC 60.136 57.143 27.45 12.99 42.44 3.69
3862 6904 0.875728 CCCTCGAAGACTATCGCGAT 59.124 55.000 26.78 26.78 42.44 4.58
3863 6905 0.463295 ACCCTCGAAGACTATCGCGA 60.463 55.000 13.09 13.09 42.44 5.87
3864 6906 1.194997 CTACCCTCGAAGACTATCGCG 59.805 57.143 0.00 0.00 42.44 5.87
3865 6907 2.220313 ACTACCCTCGAAGACTATCGC 58.780 52.381 0.00 0.00 42.44 4.58
3866 6908 6.204301 TGAAATACTACCCTCGAAGACTATCG 59.796 42.308 0.00 0.00 44.04 2.92
3867 6909 7.361894 GTGAAATACTACCCTCGAAGACTATC 58.638 42.308 0.00 0.00 0.00 2.08
3868 6910 6.264970 GGTGAAATACTACCCTCGAAGACTAT 59.735 42.308 0.00 0.00 0.00 2.12
3869 6911 5.591877 GGTGAAATACTACCCTCGAAGACTA 59.408 44.000 0.00 0.00 0.00 2.59
3870 6912 4.401837 GGTGAAATACTACCCTCGAAGACT 59.598 45.833 0.00 0.00 0.00 3.24
3871 6913 4.680702 GGTGAAATACTACCCTCGAAGAC 58.319 47.826 0.00 0.00 0.00 3.01
3872 6914 4.996788 GGTGAAATACTACCCTCGAAGA 57.003 45.455 0.00 0.00 0.00 2.87
3883 6925 9.801873 CGAATCAATAAATTTGGGTGAAATACT 57.198 29.630 0.00 0.00 32.76 2.12
3884 6926 9.796120 TCGAATCAATAAATTTGGGTGAAATAC 57.204 29.630 0.00 0.00 32.76 1.89
3885 6927 9.796120 GTCGAATCAATAAATTTGGGTGAAATA 57.204 29.630 0.00 0.00 32.76 1.40
3886 6928 8.310382 TGTCGAATCAATAAATTTGGGTGAAAT 58.690 29.630 0.00 0.00 35.65 2.17
3887 6929 7.596995 GTGTCGAATCAATAAATTTGGGTGAAA 59.403 33.333 0.00 0.00 0.00 2.69
3888 6930 7.040062 AGTGTCGAATCAATAAATTTGGGTGAA 60.040 33.333 0.00 0.00 0.00 3.18
3889 6931 6.432783 AGTGTCGAATCAATAAATTTGGGTGA 59.567 34.615 0.00 2.06 0.00 4.02
3890 6932 6.620678 AGTGTCGAATCAATAAATTTGGGTG 58.379 36.000 0.00 0.00 0.00 4.61
3891 6933 6.834168 AGTGTCGAATCAATAAATTTGGGT 57.166 33.333 0.00 0.00 0.00 4.51
3892 6934 7.417612 CCTAGTGTCGAATCAATAAATTTGGG 58.582 38.462 0.00 0.00 0.00 4.12
3893 6935 7.417612 CCCTAGTGTCGAATCAATAAATTTGG 58.582 38.462 0.00 0.00 0.00 3.28
3894 6936 7.282224 TCCCCTAGTGTCGAATCAATAAATTTG 59.718 37.037 0.00 0.00 0.00 2.32
3895 6937 7.343357 TCCCCTAGTGTCGAATCAATAAATTT 58.657 34.615 0.00 0.00 0.00 1.82
3896 6938 6.895782 TCCCCTAGTGTCGAATCAATAAATT 58.104 36.000 0.00 0.00 0.00 1.82
3897 6939 6.099845 ACTCCCCTAGTGTCGAATCAATAAAT 59.900 38.462 0.00 0.00 36.93 1.40
3898 6940 5.424252 ACTCCCCTAGTGTCGAATCAATAAA 59.576 40.000 0.00 0.00 36.93 1.40
3899 6941 4.960469 ACTCCCCTAGTGTCGAATCAATAA 59.040 41.667 0.00 0.00 36.93 1.40
3900 6942 4.543689 ACTCCCCTAGTGTCGAATCAATA 58.456 43.478 0.00 0.00 36.93 1.90
3901 6943 3.375699 ACTCCCCTAGTGTCGAATCAAT 58.624 45.455 0.00 0.00 36.93 2.57
3902 6944 2.758979 GACTCCCCTAGTGTCGAATCAA 59.241 50.000 0.00 0.00 39.07 2.57
3903 6945 2.291346 TGACTCCCCTAGTGTCGAATCA 60.291 50.000 0.00 0.00 41.04 2.57
3904 6946 2.376109 TGACTCCCCTAGTGTCGAATC 58.624 52.381 0.00 0.00 41.04 2.52
3905 6947 2.526888 TGACTCCCCTAGTGTCGAAT 57.473 50.000 0.00 0.00 41.04 3.34
3906 6948 2.297698 TTGACTCCCCTAGTGTCGAA 57.702 50.000 0.00 0.00 41.04 3.71
3907 6949 2.168496 CTTTGACTCCCCTAGTGTCGA 58.832 52.381 0.00 0.00 41.04 4.20
3908 6950 2.168496 TCTTTGACTCCCCTAGTGTCG 58.832 52.381 0.00 0.00 41.04 4.35
3909 6951 4.828072 ATTCTTTGACTCCCCTAGTGTC 57.172 45.455 0.00 0.00 39.07 3.67
3910 6952 6.893020 AATATTCTTTGACTCCCCTAGTGT 57.107 37.500 0.00 0.00 39.07 3.55
3911 6953 9.277783 CATAAATATTCTTTGACTCCCCTAGTG 57.722 37.037 0.00 0.00 39.07 2.74
3912 6954 9.225682 TCATAAATATTCTTTGACTCCCCTAGT 57.774 33.333 0.00 0.00 42.80 2.57
3913 6955 9.717942 CTCATAAATATTCTTTGACTCCCCTAG 57.282 37.037 0.00 0.00 0.00 3.02
3914 6956 9.225682 ACTCATAAATATTCTTTGACTCCCCTA 57.774 33.333 0.00 0.00 0.00 3.53
3915 6957 8.107196 ACTCATAAATATTCTTTGACTCCCCT 57.893 34.615 0.00 0.00 0.00 4.79
3916 6958 8.214364 AGACTCATAAATATTCTTTGACTCCCC 58.786 37.037 0.00 0.00 0.00 4.81
3917 6959 9.620259 AAGACTCATAAATATTCTTTGACTCCC 57.380 33.333 0.00 0.00 0.00 4.30
3931 6973 9.726438 ACAACTAAACTGCTAAGACTCATAAAT 57.274 29.630 0.00 0.00 0.00 1.40
3932 6974 9.204570 GACAACTAAACTGCTAAGACTCATAAA 57.795 33.333 0.00 0.00 0.00 1.40
3933 6975 8.364894 TGACAACTAAACTGCTAAGACTCATAA 58.635 33.333 0.00 0.00 0.00 1.90
3934 6976 7.892609 TGACAACTAAACTGCTAAGACTCATA 58.107 34.615 0.00 0.00 0.00 2.15
3935 6977 6.759272 TGACAACTAAACTGCTAAGACTCAT 58.241 36.000 0.00 0.00 0.00 2.90
3936 6978 6.156748 TGACAACTAAACTGCTAAGACTCA 57.843 37.500 0.00 0.00 0.00 3.41
3937 6979 7.659652 ATTGACAACTAAACTGCTAAGACTC 57.340 36.000 0.00 0.00 0.00 3.36
3938 6980 7.715249 TGAATTGACAACTAAACTGCTAAGACT 59.285 33.333 0.00 0.00 0.00 3.24
3939 6981 7.861630 TGAATTGACAACTAAACTGCTAAGAC 58.138 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.