Multiple sequence alignment - TraesCS2D01G028300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G028300 chr2D 100.000 7165 0 0 1 7165 11582087 11574923 0.000000e+00 13232.0
1 TraesCS2D01G028300 chr2D 90.438 1119 84 13 991 2087 11555102 11553985 0.000000e+00 1452.0
2 TraesCS2D01G028300 chr2D 75.873 1977 389 66 4020 5949 11552435 11550500 0.000000e+00 928.0
3 TraesCS2D01G028300 chr2D 79.424 243 29 15 6759 6984 2262312 2262550 1.240000e-32 152.0
4 TraesCS2D01G028300 chrUn 88.117 2777 241 46 3990 6730 230602359 230605082 0.000000e+00 3217.0
5 TraesCS2D01G028300 chrUn 82.630 2274 324 40 3986 6217 1981176 1978932 0.000000e+00 1945.0
6 TraesCS2D01G028300 chrUn 85.601 1139 102 26 2081 3175 394896093 394897213 0.000000e+00 1138.0
7 TraesCS2D01G028300 chrUn 85.905 674 67 8 3177 3845 230601435 230602085 0.000000e+00 693.0
8 TraesCS2D01G028300 chrUn 83.793 580 66 18 6509 7068 1978459 1977888 6.370000e-145 525.0
9 TraesCS2D01G028300 chrUn 83.122 474 63 16 6604 7068 2055120 2054655 4.000000e-112 416.0
10 TraesCS2D01G028300 chrUn 83.028 218 17 12 6327 6538 1978666 1978463 5.710000e-41 180.0
11 TraesCS2D01G028300 chrUn 97.000 100 3 0 6737 6836 230605413 230605512 1.240000e-37 169.0
12 TraesCS2D01G028300 chrUn 95.833 48 2 0 6171 6218 2055218 2055171 2.140000e-10 78.7
13 TraesCS2D01G028300 chr2A 87.393 2221 238 22 4004 6217 12223490 12221305 0.000000e+00 2512.0
14 TraesCS2D01G028300 chr2A 88.135 1930 219 7 4020 5941 12201867 12199940 0.000000e+00 2287.0
15 TraesCS2D01G028300 chr2A 92.202 872 38 13 6203 7070 12221288 12220443 0.000000e+00 1206.0
16 TraesCS2D01G028300 chr2A 86.605 866 112 4 878 1741 12225487 12224624 0.000000e+00 953.0
17 TraesCS2D01G028300 chr2A 75.498 2008 397 68 3992 5949 12181077 12179115 0.000000e+00 894.0
18 TraesCS2D01G028300 chr2A 79.956 903 166 13 939 1830 12209778 12208880 0.000000e+00 651.0
19 TraesCS2D01G028300 chr2A 81.373 102 9 5 6886 6984 72938121 72938027 2.770000e-09 75.0
20 TraesCS2D01G028300 chr2B 88.894 2008 195 9 3990 5989 18124882 18122895 0.000000e+00 2447.0
21 TraesCS2D01G028300 chr2B 86.952 1985 248 10 4009 5988 18092661 18090683 0.000000e+00 2220.0
22 TraesCS2D01G028300 chr2B 93.701 1159 68 2 934 2087 18128056 18126898 0.000000e+00 1731.0
23 TraesCS2D01G028300 chr2B 85.051 1271 147 26 4889 6151 18069073 18067838 0.000000e+00 1254.0
24 TraesCS2D01G028300 chr2B 78.550 2028 345 62 3992 5950 17569083 17571089 0.000000e+00 1253.0
25 TraesCS2D01G028300 chr2B 87.464 1037 67 32 6055 7070 18090664 18089670 0.000000e+00 1136.0
26 TraesCS2D01G028300 chr2B 86.143 866 116 4 878 1741 18094606 18093743 0.000000e+00 931.0
27 TraesCS2D01G028300 chr2B 87.843 765 83 7 2759 3513 18126141 18125377 0.000000e+00 889.0
28 TraesCS2D01G028300 chr2B 82.456 855 129 11 903 1745 18074746 18073901 0.000000e+00 728.0
29 TraesCS2D01G028300 chr2B 85.106 705 54 23 2089 2763 18126848 18126165 0.000000e+00 673.0
30 TraesCS2D01G028300 chr2B 84.290 662 58 26 6173 6824 18042663 18042038 7.950000e-169 604.0
31 TraesCS2D01G028300 chr2B 88.690 504 36 7 292 775 18128620 18128118 4.780000e-166 595.0
32 TraesCS2D01G028300 chr2B 89.933 447 35 5 3548 3986 18125372 18124928 1.040000e-157 568.0
33 TraesCS2D01G028300 chr2B 84.909 550 62 17 6531 7068 18122358 18121818 2.940000e-148 536.0
34 TraesCS2D01G028300 chr2B 83.830 470 49 10 318 765 17931531 17931067 8.590000e-114 422.0
35 TraesCS2D01G028300 chr2B 80.859 512 50 29 6036 6526 18122897 18122413 6.830000e-95 359.0
36 TraesCS2D01G028300 chr2B 86.500 200 25 2 6870 7068 18042044 18041846 1.210000e-52 219.0
37 TraesCS2D01G028300 chr1A 77.794 1995 364 54 3997 5949 462393286 462395243 0.000000e+00 1157.0
38 TraesCS2D01G028300 chr1A 80.564 993 175 15 1001 1984 462390518 462391501 0.000000e+00 749.0
39 TraesCS2D01G028300 chr1A 100.000 28 0 0 85 112 5659771 5659744 1.300000e-02 52.8
40 TraesCS2D01G028300 chr1D 77.756 1996 363 57 3997 5949 363122738 363124695 0.000000e+00 1151.0
41 TraesCS2D01G028300 chr1D 89.583 48 3 2 3587 3633 331509755 331509709 7.760000e-05 60.2
42 TraesCS2D01G028300 chr1B 77.468 1975 381 45 4008 5949 486480462 486482405 0.000000e+00 1123.0
43 TraesCS2D01G028300 chr1B 80.962 977 174 11 1001 1971 486485123 486486093 0.000000e+00 763.0
44 TraesCS2D01G028300 chr1B 80.348 977 178 11 1001 1971 486477519 486478487 0.000000e+00 728.0
45 TraesCS2D01G028300 chr6A 81.538 195 21 8 44 237 4684174 4684354 5.790000e-31 147.0
46 TraesCS2D01G028300 chr4A 80.808 99 11 5 6878 6976 741820996 741821086 3.590000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G028300 chr2D 11574923 11582087 7164 True 13232.000000 13232 100.000000 1 7165 1 chr2D.!!$R1 7164
1 TraesCS2D01G028300 chr2D 11550500 11555102 4602 True 1190.000000 1452 83.155500 991 5949 2 chr2D.!!$R2 4958
2 TraesCS2D01G028300 chrUn 230601435 230605512 4077 False 1359.666667 3217 90.340667 3177 6836 3 chrUn.!!$F2 3659
3 TraesCS2D01G028300 chrUn 394896093 394897213 1120 False 1138.000000 1138 85.601000 2081 3175 1 chrUn.!!$F1 1094
4 TraesCS2D01G028300 chrUn 1977888 1981176 3288 True 883.333333 1945 83.150333 3986 7068 3 chrUn.!!$R1 3082
5 TraesCS2D01G028300 chrUn 2054655 2055218 563 True 247.350000 416 89.477500 6171 7068 2 chrUn.!!$R2 897
6 TraesCS2D01G028300 chr2A 12199940 12201867 1927 True 2287.000000 2287 88.135000 4020 5941 1 chr2A.!!$R2 1921
7 TraesCS2D01G028300 chr2A 12220443 12225487 5044 True 1557.000000 2512 88.733333 878 7070 3 chr2A.!!$R5 6192
8 TraesCS2D01G028300 chr2A 12179115 12181077 1962 True 894.000000 894 75.498000 3992 5949 1 chr2A.!!$R1 1957
9 TraesCS2D01G028300 chr2A 12208880 12209778 898 True 651.000000 651 79.956000 939 1830 1 chr2A.!!$R3 891
10 TraesCS2D01G028300 chr2B 18089670 18094606 4936 True 1429.000000 2220 86.853000 878 7070 3 chr2B.!!$R5 6192
11 TraesCS2D01G028300 chr2B 18067838 18069073 1235 True 1254.000000 1254 85.051000 4889 6151 1 chr2B.!!$R2 1262
12 TraesCS2D01G028300 chr2B 17569083 17571089 2006 False 1253.000000 1253 78.550000 3992 5950 1 chr2B.!!$F1 1958
13 TraesCS2D01G028300 chr2B 18121818 18128620 6802 True 974.750000 2447 87.491875 292 7068 8 chr2B.!!$R6 6776
14 TraesCS2D01G028300 chr2B 18073901 18074746 845 True 728.000000 728 82.456000 903 1745 1 chr2B.!!$R3 842
15 TraesCS2D01G028300 chr2B 18041846 18042663 817 True 411.500000 604 85.395000 6173 7068 2 chr2B.!!$R4 895
16 TraesCS2D01G028300 chr1A 462390518 462395243 4725 False 953.000000 1157 79.179000 1001 5949 2 chr1A.!!$F1 4948
17 TraesCS2D01G028300 chr1D 363122738 363124695 1957 False 1151.000000 1151 77.756000 3997 5949 1 chr1D.!!$F1 1952
18 TraesCS2D01G028300 chr1B 486477519 486486093 8574 False 871.333333 1123 79.592667 1001 5949 3 chr1B.!!$F1 4948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.249398 GGCTGACACTACGGGTTGAT 59.751 55.000 0.00 0.00 0.00 2.57 F
729 750 0.383124 GCACGAAGAGACAAACGCAC 60.383 55.000 0.00 0.00 0.00 5.34 F
1324 1355 0.391661 GCTCACGAAGAAGATGGCCA 60.392 55.000 8.56 8.56 0.00 5.36 F
2400 2631 0.923358 ATAGGAACCATTTCGGGGCA 59.077 50.000 0.00 0.00 40.22 5.36 F
3307 3877 1.227853 GACACCCGGGATGGCATAC 60.228 63.158 32.02 0.00 35.87 2.39 F
3523 4260 1.337541 TGTGTGCATGCTCAGAGAGAC 60.338 52.381 22.00 10.24 0.00 3.36 F
5190 7875 1.141053 GTAGTAATGGTGGGAGGCCTG 59.859 57.143 12.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 2419 0.178998 ATCTGACATGGCCCATGAGC 60.179 55.0 29.99 19.97 43.81 4.26 R
2230 2461 0.326264 GGCTGGATTGTCAGTCAGGT 59.674 55.0 0.00 0.00 39.06 4.00 R
3247 3817 0.914551 CGACGTCCAGATTTGTAGCG 59.085 55.0 10.58 0.00 0.00 4.26 R
3797 6248 0.843309 TCCCACTTCACCACACATGT 59.157 50.0 0.00 0.00 0.00 3.21 R
5043 7703 2.163815 ACTCAGTAATTCCGTGTCGAGG 59.836 50.0 0.00 0.00 0.00 4.63 R
5457 8166 0.821301 TTGCGCATGACAAACTCCCA 60.821 50.0 12.75 0.00 0.00 4.37 R
6861 12504 0.114168 CCCTCAAAATCCACCCACCA 59.886 55.0 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.445557 AGCTGAAGGAAGGAAGAAGTTT 57.554 40.909 0.00 0.00 0.00 2.66
22 23 4.140536 AGCTGAAGGAAGGAAGAAGTTTG 58.859 43.478 0.00 0.00 0.00 2.93
23 24 4.137543 GCTGAAGGAAGGAAGAAGTTTGA 58.862 43.478 0.00 0.00 0.00 2.69
24 25 4.215185 GCTGAAGGAAGGAAGAAGTTTGAG 59.785 45.833 0.00 0.00 0.00 3.02
25 26 4.137543 TGAAGGAAGGAAGAAGTTTGAGC 58.862 43.478 0.00 0.00 0.00 4.26
26 27 3.864789 AGGAAGGAAGAAGTTTGAGCA 57.135 42.857 0.00 0.00 0.00 4.26
27 28 4.379302 AGGAAGGAAGAAGTTTGAGCAT 57.621 40.909 0.00 0.00 0.00 3.79
28 29 4.077822 AGGAAGGAAGAAGTTTGAGCATG 58.922 43.478 0.00 0.00 0.00 4.06
29 30 3.823304 GGAAGGAAGAAGTTTGAGCATGT 59.177 43.478 0.00 0.00 0.00 3.21
30 31 4.083057 GGAAGGAAGAAGTTTGAGCATGTC 60.083 45.833 0.00 0.00 0.00 3.06
31 32 3.070018 AGGAAGAAGTTTGAGCATGTCG 58.930 45.455 0.00 0.00 0.00 4.35
32 33 2.160417 GGAAGAAGTTTGAGCATGTCGG 59.840 50.000 0.00 0.00 0.00 4.79
33 34 2.550830 AGAAGTTTGAGCATGTCGGT 57.449 45.000 0.00 0.00 0.00 4.69
34 35 3.678056 AGAAGTTTGAGCATGTCGGTA 57.322 42.857 0.00 0.00 0.00 4.02
35 36 3.589988 AGAAGTTTGAGCATGTCGGTAG 58.410 45.455 0.00 0.00 0.00 3.18
36 37 3.006967 AGAAGTTTGAGCATGTCGGTAGT 59.993 43.478 0.00 0.00 0.00 2.73
37 38 3.402628 AGTTTGAGCATGTCGGTAGTT 57.597 42.857 0.00 0.00 0.00 2.24
38 39 4.530710 AGTTTGAGCATGTCGGTAGTTA 57.469 40.909 0.00 0.00 0.00 2.24
39 40 4.890088 AGTTTGAGCATGTCGGTAGTTAA 58.110 39.130 0.00 0.00 0.00 2.01
40 41 5.302360 AGTTTGAGCATGTCGGTAGTTAAA 58.698 37.500 0.00 0.00 0.00 1.52
41 42 5.178809 AGTTTGAGCATGTCGGTAGTTAAAC 59.821 40.000 0.00 0.00 0.00 2.01
42 43 4.260139 TGAGCATGTCGGTAGTTAAACA 57.740 40.909 0.00 0.00 0.00 2.83
43 44 3.991773 TGAGCATGTCGGTAGTTAAACAC 59.008 43.478 0.00 0.00 0.00 3.32
44 45 3.991773 GAGCATGTCGGTAGTTAAACACA 59.008 43.478 0.00 0.00 0.00 3.72
45 46 4.382291 AGCATGTCGGTAGTTAAACACAA 58.618 39.130 0.00 0.00 0.00 3.33
46 47 4.451096 AGCATGTCGGTAGTTAAACACAAG 59.549 41.667 0.00 0.00 0.00 3.16
47 48 4.378046 GCATGTCGGTAGTTAAACACAAGG 60.378 45.833 0.00 0.00 0.00 3.61
48 49 4.669206 TGTCGGTAGTTAAACACAAGGA 57.331 40.909 0.00 0.00 0.00 3.36
49 50 4.624015 TGTCGGTAGTTAAACACAAGGAG 58.376 43.478 0.00 0.00 0.00 3.69
50 51 4.341806 TGTCGGTAGTTAAACACAAGGAGA 59.658 41.667 0.00 0.00 0.00 3.71
51 52 5.163426 TGTCGGTAGTTAAACACAAGGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
52 53 5.754890 GTCGGTAGTTAAACACAAGGAGAAA 59.245 40.000 0.00 0.00 0.00 2.52
53 54 6.258507 GTCGGTAGTTAAACACAAGGAGAAAA 59.741 38.462 0.00 0.00 0.00 2.29
54 55 6.822676 TCGGTAGTTAAACACAAGGAGAAAAA 59.177 34.615 0.00 0.00 0.00 1.94
55 56 7.499895 TCGGTAGTTAAACACAAGGAGAAAAAT 59.500 33.333 0.00 0.00 0.00 1.82
56 57 8.776470 CGGTAGTTAAACACAAGGAGAAAAATA 58.224 33.333 0.00 0.00 0.00 1.40
60 61 8.568794 AGTTAAACACAAGGAGAAAAATAGAGC 58.431 33.333 0.00 0.00 0.00 4.09
61 62 5.613358 AACACAAGGAGAAAAATAGAGCG 57.387 39.130 0.00 0.00 0.00 5.03
62 63 3.437049 ACACAAGGAGAAAAATAGAGCGC 59.563 43.478 0.00 0.00 0.00 5.92
63 64 3.686726 CACAAGGAGAAAAATAGAGCGCT 59.313 43.478 11.27 11.27 0.00 5.92
64 65 4.870426 CACAAGGAGAAAAATAGAGCGCTA 59.130 41.667 11.50 0.00 0.00 4.26
65 66 5.525378 CACAAGGAGAAAAATAGAGCGCTAT 59.475 40.000 11.50 10.93 38.98 2.97
66 67 6.701841 CACAAGGAGAAAAATAGAGCGCTATA 59.298 38.462 15.04 15.04 36.31 1.31
67 68 6.702282 ACAAGGAGAAAAATAGAGCGCTATAC 59.298 38.462 14.99 0.00 36.31 1.47
68 69 5.785243 AGGAGAAAAATAGAGCGCTATACC 58.215 41.667 14.99 9.12 36.31 2.73
69 70 5.304614 AGGAGAAAAATAGAGCGCTATACCA 59.695 40.000 14.99 0.00 36.31 3.25
70 71 5.989777 GGAGAAAAATAGAGCGCTATACCAA 59.010 40.000 14.99 0.00 36.31 3.67
71 72 6.482308 GGAGAAAAATAGAGCGCTATACCAAA 59.518 38.462 14.99 0.00 36.31 3.28
72 73 7.012044 GGAGAAAAATAGAGCGCTATACCAAAA 59.988 37.037 14.99 0.00 36.31 2.44
73 74 8.451908 AGAAAAATAGAGCGCTATACCAAAAT 57.548 30.769 14.99 0.00 36.31 1.82
74 75 9.555727 AGAAAAATAGAGCGCTATACCAAAATA 57.444 29.630 14.99 0.00 36.31 1.40
75 76 9.813080 GAAAAATAGAGCGCTATACCAAAATAG 57.187 33.333 14.99 0.00 36.31 1.73
76 77 8.904099 AAAATAGAGCGCTATACCAAAATAGT 57.096 30.769 14.99 0.00 36.31 2.12
77 78 7.891183 AATAGAGCGCTATACCAAAATAGTG 57.109 36.000 14.99 0.00 41.08 2.74
80 81 3.788434 CGCTATACCAAAATAGTGCCG 57.212 47.619 0.00 0.00 34.25 5.69
81 82 3.386486 CGCTATACCAAAATAGTGCCGA 58.614 45.455 0.00 0.00 34.25 5.54
82 83 3.183775 CGCTATACCAAAATAGTGCCGAC 59.816 47.826 0.00 0.00 34.25 4.79
83 84 4.124238 GCTATACCAAAATAGTGCCGACA 58.876 43.478 0.00 0.00 32.89 4.35
84 85 4.755123 GCTATACCAAAATAGTGCCGACAT 59.245 41.667 0.00 0.00 32.89 3.06
85 86 5.107065 GCTATACCAAAATAGTGCCGACATC 60.107 44.000 0.00 0.00 32.89 3.06
86 87 3.066291 ACCAAAATAGTGCCGACATCA 57.934 42.857 0.00 0.00 0.00 3.07
87 88 3.417101 ACCAAAATAGTGCCGACATCAA 58.583 40.909 0.00 0.00 0.00 2.57
88 89 3.823873 ACCAAAATAGTGCCGACATCAAA 59.176 39.130 0.00 0.00 0.00 2.69
89 90 4.279671 ACCAAAATAGTGCCGACATCAAAA 59.720 37.500 0.00 0.00 0.00 2.44
90 91 5.047377 ACCAAAATAGTGCCGACATCAAAAT 60.047 36.000 0.00 0.00 0.00 1.82
91 92 6.151985 ACCAAAATAGTGCCGACATCAAAATA 59.848 34.615 0.00 0.00 0.00 1.40
92 93 7.147915 ACCAAAATAGTGCCGACATCAAAATAT 60.148 33.333 0.00 0.00 0.00 1.28
93 94 7.167968 CCAAAATAGTGCCGACATCAAAATATG 59.832 37.037 0.00 0.00 0.00 1.78
94 95 6.942532 AATAGTGCCGACATCAAAATATGT 57.057 33.333 0.00 0.00 42.75 2.29
95 96 6.942532 ATAGTGCCGACATCAAAATATGTT 57.057 33.333 0.00 0.00 40.17 2.71
96 97 8.445275 AATAGTGCCGACATCAAAATATGTTA 57.555 30.769 0.00 0.00 40.17 2.41
97 98 6.942532 AGTGCCGACATCAAAATATGTTAT 57.057 33.333 0.00 0.00 40.17 1.89
98 99 7.333528 AGTGCCGACATCAAAATATGTTATT 57.666 32.000 0.00 0.00 40.17 1.40
99 100 8.445275 AGTGCCGACATCAAAATATGTTATTA 57.555 30.769 0.00 0.00 40.17 0.98
100 101 8.559536 AGTGCCGACATCAAAATATGTTATTAG 58.440 33.333 0.00 0.00 40.17 1.73
101 102 7.323656 GTGCCGACATCAAAATATGTTATTAGC 59.676 37.037 0.00 0.00 40.17 3.09
102 103 7.012799 TGCCGACATCAAAATATGTTATTAGCA 59.987 33.333 0.00 0.00 40.17 3.49
103 104 8.023128 GCCGACATCAAAATATGTTATTAGCAT 58.977 33.333 0.00 0.00 40.17 3.79
104 105 9.333497 CCGACATCAAAATATGTTATTAGCATG 57.667 33.333 3.52 0.00 40.17 4.06
105 106 8.843733 CGACATCAAAATATGTTATTAGCATGC 58.156 33.333 10.51 10.51 40.17 4.06
106 107 9.903682 GACATCAAAATATGTTATTAGCATGCT 57.096 29.630 25.99 25.99 40.17 3.79
122 123 8.932945 TTAGCATGCTATATCACACTAATAGC 57.067 34.615 27.35 6.61 45.37 2.97
128 129 7.840342 GCTATATCACACTAATAGCAATGCT 57.160 36.000 13.92 13.92 44.80 3.79
129 130 8.932945 GCTATATCACACTAATAGCAATGCTA 57.067 34.615 17.97 17.97 44.80 3.49
140 141 2.398498 AGCAATGCTATTAGCGAGACG 58.602 47.619 5.69 0.00 46.26 4.18
141 142 2.128035 GCAATGCTATTAGCGAGACGT 58.872 47.619 10.94 0.00 46.26 4.34
142 143 2.540101 GCAATGCTATTAGCGAGACGTT 59.460 45.455 10.94 0.00 46.26 3.99
143 144 3.602491 GCAATGCTATTAGCGAGACGTTG 60.602 47.826 10.94 9.28 46.26 4.10
144 145 2.933495 TGCTATTAGCGAGACGTTGT 57.067 45.000 10.94 0.00 46.26 3.32
145 146 4.563337 ATGCTATTAGCGAGACGTTGTA 57.437 40.909 10.94 0.00 46.26 2.41
146 147 3.688272 TGCTATTAGCGAGACGTTGTAC 58.312 45.455 10.94 0.00 46.26 2.90
147 148 3.127376 TGCTATTAGCGAGACGTTGTACA 59.873 43.478 10.94 0.00 46.26 2.90
148 149 3.481388 GCTATTAGCGAGACGTTGTACAC 59.519 47.826 0.00 0.00 0.00 2.90
149 150 3.844577 ATTAGCGAGACGTTGTACACT 57.155 42.857 0.00 0.00 0.00 3.55
150 151 4.952262 ATTAGCGAGACGTTGTACACTA 57.048 40.909 0.00 0.00 0.00 2.74
151 152 4.747540 TTAGCGAGACGTTGTACACTAA 57.252 40.909 0.00 0.00 0.00 2.24
152 153 3.844577 AGCGAGACGTTGTACACTAAT 57.155 42.857 0.00 0.00 0.00 1.73
153 154 4.952262 AGCGAGACGTTGTACACTAATA 57.048 40.909 0.00 0.00 0.00 0.98
154 155 5.496133 AGCGAGACGTTGTACACTAATAT 57.504 39.130 0.00 0.00 0.00 1.28
155 156 6.609237 AGCGAGACGTTGTACACTAATATA 57.391 37.500 0.00 0.00 0.00 0.86
156 157 7.199541 AGCGAGACGTTGTACACTAATATAT 57.800 36.000 0.00 0.00 0.00 0.86
157 158 7.646314 AGCGAGACGTTGTACACTAATATATT 58.354 34.615 2.97 2.97 0.00 1.28
158 159 8.133627 AGCGAGACGTTGTACACTAATATATTT 58.866 33.333 2.68 0.00 0.00 1.40
159 160 9.385902 GCGAGACGTTGTACACTAATATATTTA 57.614 33.333 2.68 0.00 0.00 1.40
178 179 8.894768 ATATTTAGTGAGGCAATTCTCAGTAC 57.105 34.615 9.96 0.00 44.61 2.73
179 180 3.238108 AGTGAGGCAATTCTCAGTACG 57.762 47.619 3.29 0.00 43.40 3.67
180 181 2.093973 AGTGAGGCAATTCTCAGTACGG 60.094 50.000 3.29 0.00 43.40 4.02
181 182 1.291132 GAGGCAATTCTCAGTACGGC 58.709 55.000 0.00 0.00 34.13 5.68
182 183 0.613260 AGGCAATTCTCAGTACGGCA 59.387 50.000 0.00 0.00 0.00 5.69
183 184 1.210478 AGGCAATTCTCAGTACGGCAT 59.790 47.619 0.00 0.00 0.00 4.40
184 185 2.434336 AGGCAATTCTCAGTACGGCATA 59.566 45.455 0.00 0.00 0.00 3.14
185 186 2.802816 GGCAATTCTCAGTACGGCATAG 59.197 50.000 0.00 0.00 0.00 2.23
186 187 2.221981 GCAATTCTCAGTACGGCATAGC 59.778 50.000 0.00 0.00 0.00 2.97
187 188 3.457234 CAATTCTCAGTACGGCATAGCA 58.543 45.455 0.00 0.00 0.00 3.49
188 189 4.060900 CAATTCTCAGTACGGCATAGCAT 58.939 43.478 0.00 0.00 0.00 3.79
189 190 2.800881 TCTCAGTACGGCATAGCATG 57.199 50.000 0.00 0.00 0.00 4.06
208 209 3.232213 TGCTATAGGCGTGCTATTAGC 57.768 47.619 8.80 8.80 45.43 3.09
209 210 2.186076 GCTATAGGCGTGCTATTAGCG 58.814 52.381 10.94 0.00 46.26 4.26
210 211 2.159421 GCTATAGGCGTGCTATTAGCGA 60.159 50.000 10.94 0.00 46.26 4.93
211 212 3.489398 GCTATAGGCGTGCTATTAGCGAT 60.489 47.826 10.94 0.00 46.26 4.58
212 213 2.347697 TAGGCGTGCTATTAGCGATG 57.652 50.000 10.94 6.98 46.26 3.84
213 214 0.946221 AGGCGTGCTATTAGCGATGC 60.946 55.000 17.07 17.07 46.26 3.91
214 215 0.946221 GGCGTGCTATTAGCGATGCT 60.946 55.000 21.13 0.00 46.26 3.79
215 216 1.668919 GGCGTGCTATTAGCGATGCTA 60.669 52.381 21.13 0.00 46.26 3.49
216 217 2.263077 GCGTGCTATTAGCGATGCTAT 58.737 47.619 17.62 0.00 46.26 2.97
217 218 3.435566 GCGTGCTATTAGCGATGCTATA 58.564 45.455 17.62 0.00 46.26 1.31
218 219 3.483922 GCGTGCTATTAGCGATGCTATAG 59.516 47.826 17.62 0.00 46.26 1.31
219 220 3.483922 CGTGCTATTAGCGATGCTATAGC 59.516 47.826 18.18 18.18 46.26 2.97
249 250 4.904253 TTTTCAGTGGTTAAACGAAGGG 57.096 40.909 0.00 0.00 0.00 3.95
250 251 3.564053 TTCAGTGGTTAAACGAAGGGT 57.436 42.857 0.00 0.00 0.00 4.34
251 252 4.686191 TTCAGTGGTTAAACGAAGGGTA 57.314 40.909 0.00 0.00 0.00 3.69
252 253 4.261578 TCAGTGGTTAAACGAAGGGTAG 57.738 45.455 0.00 0.00 0.00 3.18
253 254 3.642848 TCAGTGGTTAAACGAAGGGTAGT 59.357 43.478 0.00 0.00 0.00 2.73
254 255 3.744426 CAGTGGTTAAACGAAGGGTAGTG 59.256 47.826 0.00 0.00 0.00 2.74
255 256 2.481568 GTGGTTAAACGAAGGGTAGTGC 59.518 50.000 0.00 0.00 0.00 4.40
256 257 2.369532 TGGTTAAACGAAGGGTAGTGCT 59.630 45.455 0.00 0.00 0.00 4.40
257 258 3.577848 TGGTTAAACGAAGGGTAGTGCTA 59.422 43.478 0.00 0.00 0.00 3.49
258 259 3.928992 GGTTAAACGAAGGGTAGTGCTAC 59.071 47.826 0.00 0.95 35.40 3.58
259 260 4.559153 GTTAAACGAAGGGTAGTGCTACA 58.441 43.478 10.98 0.00 37.78 2.74
260 261 2.738013 AACGAAGGGTAGTGCTACAC 57.262 50.000 10.98 7.52 39.69 2.90
266 267 2.097825 AGGGTAGTGCTACACTTACGG 58.902 52.381 8.22 0.00 46.93 4.02
267 268 1.135721 GGGTAGTGCTACACTTACGGG 59.864 57.143 5.44 0.00 42.59 5.28
268 269 1.821136 GGTAGTGCTACACTTACGGGT 59.179 52.381 5.44 0.00 42.59 5.28
269 270 2.232208 GGTAGTGCTACACTTACGGGTT 59.768 50.000 5.44 0.00 42.59 4.11
270 271 3.306294 GGTAGTGCTACACTTACGGGTTT 60.306 47.826 5.44 0.00 42.59 3.27
271 272 2.762745 AGTGCTACACTTACGGGTTTG 58.237 47.619 0.00 0.00 42.59 2.93
272 273 1.802365 GTGCTACACTTACGGGTTTGG 59.198 52.381 0.00 0.00 0.00 3.28
273 274 0.800631 GCTACACTTACGGGTTTGGC 59.199 55.000 0.00 0.00 0.00 4.52
274 275 1.609841 GCTACACTTACGGGTTTGGCT 60.610 52.381 0.00 0.00 0.00 4.75
275 276 2.073816 CTACACTTACGGGTTTGGCTG 58.926 52.381 0.00 0.00 0.00 4.85
276 277 0.470766 ACACTTACGGGTTTGGCTGA 59.529 50.000 0.00 0.00 0.00 4.26
277 278 0.872388 CACTTACGGGTTTGGCTGAC 59.128 55.000 0.00 0.00 0.00 3.51
278 279 0.470766 ACTTACGGGTTTGGCTGACA 59.529 50.000 0.00 0.00 0.00 3.58
279 280 0.872388 CTTACGGGTTTGGCTGACAC 59.128 55.000 0.00 0.00 0.00 3.67
280 281 0.470766 TTACGGGTTTGGCTGACACT 59.529 50.000 0.00 0.00 0.00 3.55
281 282 1.340088 TACGGGTTTGGCTGACACTA 58.660 50.000 0.00 0.00 0.00 2.74
282 283 0.250166 ACGGGTTTGGCTGACACTAC 60.250 55.000 0.00 0.00 0.00 2.73
283 284 1.289109 CGGGTTTGGCTGACACTACG 61.289 60.000 0.00 0.00 0.00 3.51
284 285 0.953960 GGGTTTGGCTGACACTACGG 60.954 60.000 0.00 0.00 0.00 4.02
285 286 0.953960 GGTTTGGCTGACACTACGGG 60.954 60.000 0.00 0.00 0.00 5.28
286 287 0.250166 GTTTGGCTGACACTACGGGT 60.250 55.000 0.00 0.00 0.00 5.28
287 288 0.470766 TTTGGCTGACACTACGGGTT 59.529 50.000 0.00 0.00 0.00 4.11
288 289 0.250124 TTGGCTGACACTACGGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
289 290 1.116536 TGGCTGACACTACGGGTTGA 61.117 55.000 0.00 0.00 0.00 3.18
290 291 0.249398 GGCTGACACTACGGGTTGAT 59.751 55.000 0.00 0.00 0.00 2.57
360 363 3.775654 GAGCGGTGAGTGGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
365 368 3.249189 GTGAGTGGGAGGGGTGCA 61.249 66.667 0.00 0.00 0.00 4.57
422 425 7.067494 GCAAATTATCTAGCAGAGAAAGGGAAA 59.933 37.037 0.00 0.00 37.85 3.13
431 434 6.856895 AGCAGAGAAAGGGAAAATTTTATCG 58.143 36.000 2.75 0.00 31.65 2.92
466 469 9.740239 AGTTTCAATATATGTGCAGCTTTATTG 57.260 29.630 10.79 10.79 0.00 1.90
522 525 2.009051 TGCACTTGAATATCCGCTGTG 58.991 47.619 0.00 0.00 0.00 3.66
556 571 5.047660 GTCCTTATCATGCTGGAGTAGTAGG 60.048 48.000 0.00 0.00 0.00 3.18
561 576 1.320344 TGCTGGAGTAGTAGGCGTGG 61.320 60.000 0.00 0.00 0.00 4.94
566 581 3.634504 TGGAGTAGTAGGCGTGGATTTA 58.365 45.455 0.00 0.00 0.00 1.40
582 597 9.944663 GCGTGGATTTATTTTATCTGACAATAA 57.055 29.630 0.00 0.00 0.00 1.40
615 633 9.813446 AAAGAAATTGATTTGATCTTATCCTGC 57.187 29.630 0.00 0.00 0.00 4.85
629 647 6.516718 TCTTATCCTGCTGCTAAGTAATCAC 58.483 40.000 0.00 0.00 0.00 3.06
645 663 2.983907 TCACTCGTTGGGTGTTAACA 57.016 45.000 3.59 3.59 36.25 2.41
651 669 4.399934 ACTCGTTGGGTGTTAACAAAACAT 59.600 37.500 20.93 9.74 32.23 2.71
658 676 4.926832 GGGTGTTAACAAAACATGTATGGC 59.073 41.667 10.51 0.00 42.99 4.40
698 716 9.436957 CAAGTGGTACTCTTCTACATTAACAAT 57.563 33.333 0.00 0.00 40.43 2.71
712 733 9.838975 CTACATTAACAATTACACAATTCTGCA 57.161 29.630 0.00 0.00 31.82 4.41
714 735 7.325821 ACATTAACAATTACACAATTCTGCACG 59.674 33.333 0.00 0.00 31.82 5.34
728 749 0.808060 TGCACGAAGAGACAAACGCA 60.808 50.000 0.00 0.00 0.00 5.24
729 750 0.383124 GCACGAAGAGACAAACGCAC 60.383 55.000 0.00 0.00 0.00 5.34
772 793 4.165036 TGCGTTTACATGAATCAATGCAC 58.835 39.130 0.00 0.00 36.47 4.57
775 796 4.491942 CGTTTACATGAATCAATGCACGTC 59.508 41.667 0.00 0.00 30.22 4.34
777 798 5.816449 TTACATGAATCAATGCACGTCAT 57.184 34.783 0.00 0.00 36.87 3.06
789 810 2.925578 CACGTCATGCCATGTTCATT 57.074 45.000 4.31 0.00 0.00 2.57
790 811 3.220507 CACGTCATGCCATGTTCATTT 57.779 42.857 4.31 0.00 0.00 2.32
791 812 4.354071 CACGTCATGCCATGTTCATTTA 57.646 40.909 4.31 0.00 0.00 1.40
792 813 4.731720 CACGTCATGCCATGTTCATTTAA 58.268 39.130 4.31 0.00 0.00 1.52
793 814 4.558470 CACGTCATGCCATGTTCATTTAAC 59.442 41.667 4.31 0.00 38.67 2.01
794 815 3.785521 CGTCATGCCATGTTCATTTAACG 59.214 43.478 4.31 0.87 41.30 3.18
795 816 3.547468 GTCATGCCATGTTCATTTAACGC 59.453 43.478 4.31 0.00 41.30 4.84
796 817 2.645730 TGCCATGTTCATTTAACGCC 57.354 45.000 0.00 0.00 41.30 5.68
797 818 2.166829 TGCCATGTTCATTTAACGCCT 58.833 42.857 0.00 0.00 41.30 5.52
798 819 3.348119 TGCCATGTTCATTTAACGCCTA 58.652 40.909 0.00 0.00 41.30 3.93
799 820 3.376859 TGCCATGTTCATTTAACGCCTAG 59.623 43.478 0.00 0.00 41.30 3.02
800 821 3.625764 GCCATGTTCATTTAACGCCTAGA 59.374 43.478 0.00 0.00 41.30 2.43
801 822 4.275936 GCCATGTTCATTTAACGCCTAGAT 59.724 41.667 0.00 0.00 41.30 1.98
802 823 5.560953 GCCATGTTCATTTAACGCCTAGATC 60.561 44.000 0.00 0.00 41.30 2.75
803 824 5.527214 CCATGTTCATTTAACGCCTAGATCA 59.473 40.000 0.00 0.00 41.30 2.92
804 825 6.205464 CCATGTTCATTTAACGCCTAGATCAT 59.795 38.462 0.00 0.00 41.30 2.45
805 826 7.255242 CCATGTTCATTTAACGCCTAGATCATT 60.255 37.037 0.00 0.00 41.30 2.57
806 827 7.015226 TGTTCATTTAACGCCTAGATCATTG 57.985 36.000 0.00 0.00 41.30 2.82
807 828 6.597672 TGTTCATTTAACGCCTAGATCATTGT 59.402 34.615 0.00 0.00 41.30 2.71
808 829 6.603237 TCATTTAACGCCTAGATCATTGTG 57.397 37.500 0.00 0.00 0.00 3.33
809 830 6.345298 TCATTTAACGCCTAGATCATTGTGA 58.655 36.000 0.00 0.00 0.00 3.58
810 831 6.992123 TCATTTAACGCCTAGATCATTGTGAT 59.008 34.615 0.00 0.00 40.34 3.06
811 832 7.498900 TCATTTAACGCCTAGATCATTGTGATT 59.501 33.333 0.00 0.00 37.20 2.57
812 833 7.624360 TTTAACGCCTAGATCATTGTGATTT 57.376 32.000 0.00 0.00 37.20 2.17
813 834 8.725405 TTTAACGCCTAGATCATTGTGATTTA 57.275 30.769 0.00 0.00 37.20 1.40
814 835 8.902540 TTAACGCCTAGATCATTGTGATTTAT 57.097 30.769 0.00 0.00 37.20 1.40
815 836 9.990360 TTAACGCCTAGATCATTGTGATTTATA 57.010 29.630 0.00 0.00 37.20 0.98
838 859 6.706055 ATAACTGAATATTATGACCGCACG 57.294 37.500 0.00 0.00 0.00 5.34
839 860 4.054780 ACTGAATATTATGACCGCACGT 57.945 40.909 0.00 0.00 0.00 4.49
840 861 4.439057 ACTGAATATTATGACCGCACGTT 58.561 39.130 0.00 0.00 0.00 3.99
841 862 5.593968 ACTGAATATTATGACCGCACGTTA 58.406 37.500 0.00 0.00 0.00 3.18
842 863 5.461078 ACTGAATATTATGACCGCACGTTAC 59.539 40.000 0.00 0.00 0.00 2.50
843 864 4.441744 TGAATATTATGACCGCACGTTACG 59.558 41.667 2.19 2.19 0.00 3.18
852 873 4.430765 CACGTTACGGAGCGGCCT 62.431 66.667 9.24 0.00 0.00 5.19
853 874 4.430765 ACGTTACGGAGCGGCCTG 62.431 66.667 9.24 0.00 0.00 4.85
855 876 4.078516 GTTACGGAGCGGCCTGGT 62.079 66.667 0.00 0.00 0.00 4.00
856 877 2.362760 TTACGGAGCGGCCTGGTA 60.363 61.111 0.00 0.00 0.00 3.25
857 878 1.983481 TTACGGAGCGGCCTGGTAA 60.983 57.895 0.00 0.00 0.00 2.85
976 999 0.805614 CGTCCACCAAACAACACACA 59.194 50.000 0.00 0.00 0.00 3.72
977 1000 1.466697 CGTCCACCAAACAACACACAC 60.467 52.381 0.00 0.00 0.00 3.82
987 1010 6.931840 ACCAAACAACACACACAAAAATTACT 59.068 30.769 0.00 0.00 0.00 2.24
1095 1124 0.836400 AGAAAGGCGTCAGGGAAGGA 60.836 55.000 0.00 0.00 0.00 3.36
1173 1202 2.663196 GTACCACGGGAGCAGCTT 59.337 61.111 0.00 0.00 0.00 3.74
1260 1289 1.267806 GACAAGTTCCTGGTGCATGTG 59.732 52.381 0.00 0.00 0.00 3.21
1324 1355 0.391661 GCTCACGAAGAAGATGGCCA 60.392 55.000 8.56 8.56 0.00 5.36
1346 1377 0.930726 TTGTTCACCAAGGGGAAGGT 59.069 50.000 3.54 0.00 39.10 3.50
1692 1723 1.408702 GACTGCAAGGCTTTTGTTCCA 59.591 47.619 0.00 0.00 40.68 3.53
1752 1843 9.866655 ACAAATATCCTTCTTAATCTTGGCATA 57.133 29.630 0.00 0.00 0.00 3.14
1835 1926 4.082190 TCTCAAGAACAAGAGGTATCACCG 60.082 45.833 0.00 0.00 44.90 4.94
1869 1982 2.042464 TGATGGCCACTATCTCACTCC 58.958 52.381 8.16 0.00 0.00 3.85
1873 1987 2.027192 TGGCCACTATCTCACTCCAAAC 60.027 50.000 0.00 0.00 0.00 2.93
1911 2030 7.177041 TGGTATTTGGGGAATAGTGTGTAAAAC 59.823 37.037 0.00 0.00 31.01 2.43
2019 2185 7.826260 AGCGTTTAAAACCCATTATCATTTG 57.174 32.000 0.00 0.00 0.00 2.32
2051 2217 6.785488 TGTTCTAGCACTGTGATAACTTTG 57.215 37.500 12.86 0.00 0.00 2.77
2078 2244 8.264347 ACCTCATTTTATTGTTTGTTCCAAACT 58.736 29.630 17.72 4.66 0.00 2.66
2089 2255 4.090761 TGTTCCAAACTGAGAAGCTCAT 57.909 40.909 0.00 0.00 39.92 2.90
2119 2347 8.575565 TTTCAGACTTAGCATATTATGTCGAC 57.424 34.615 9.11 9.11 34.59 4.20
2122 2350 9.063615 TCAGACTTAGCATATTATGTCGACTTA 57.936 33.333 17.92 12.17 34.59 2.24
2136 2366 4.811158 TCGACTTAGCGACAATTTTACG 57.189 40.909 0.00 0.00 35.01 3.18
2183 2413 3.820557 ACTCAATTGCCACAACTACACT 58.179 40.909 0.00 0.00 0.00 3.55
2189 2419 6.593770 TCAATTGCCACAACTACACTATACTG 59.406 38.462 0.00 0.00 0.00 2.74
2269 2500 4.040461 AGCCAGGTGTAGCGTTATCATAAT 59.960 41.667 0.00 0.00 0.00 1.28
2289 2520 9.031537 TCATAATGGTCTGTCTTGTTAGTTCTA 57.968 33.333 0.00 0.00 0.00 2.10
2391 2622 9.629649 TGGGAGAACTTTATATATAGGAACCAT 57.370 33.333 5.36 0.00 0.00 3.55
2397 2628 9.734984 AACTTTATATATAGGAACCATTTCGGG 57.265 33.333 5.36 0.00 40.22 5.14
2398 2629 8.326529 ACTTTATATATAGGAACCATTTCGGGG 58.673 37.037 5.36 0.00 40.22 5.73
2399 2630 2.943036 TATAGGAACCATTTCGGGGC 57.057 50.000 0.00 0.00 40.22 5.80
2400 2631 0.923358 ATAGGAACCATTTCGGGGCA 59.077 50.000 0.00 0.00 40.22 5.36
2457 2710 7.182817 TCTAAATAGGAATATGCAGCGGTAT 57.817 36.000 0.00 0.00 0.00 2.73
2542 2801 6.142817 CGGCTATGCTTTTATGTACAAATCC 58.857 40.000 0.00 0.00 0.00 3.01
2611 2878 6.389091 TGCAATTTTCTTCATGTACATGGAC 58.611 36.000 30.56 12.01 39.24 4.02
2628 2895 5.707298 ACATGGACTTGTGGTATCTCAAAAG 59.293 40.000 0.00 0.00 37.83 2.27
2704 2971 3.446161 CACGGTAGTATTTGAGACCTGGA 59.554 47.826 0.00 0.00 0.00 3.86
2705 2972 3.700038 ACGGTAGTATTTGAGACCTGGAG 59.300 47.826 0.00 0.00 0.00 3.86
2706 2973 3.952323 CGGTAGTATTTGAGACCTGGAGA 59.048 47.826 0.00 0.00 0.00 3.71
2719 2986 2.573462 ACCTGGAGACTACTACCGTGTA 59.427 50.000 0.00 0.00 0.00 2.90
2792 3358 9.667107 ACTACATATATGTGGCATGGTATTTAC 57.333 33.333 25.48 0.00 42.25 2.01
2799 3365 4.769488 TGTGGCATGGTATTTACATGTGTT 59.231 37.500 9.11 0.00 45.68 3.32
2813 3379 9.709495 ATTTACATGTGTTTGTCTGCATTAATT 57.291 25.926 9.11 0.00 0.00 1.40
2885 3452 7.226523 TCTGATCTTTGATGTTTTTCGTTGAGA 59.773 33.333 0.00 0.00 0.00 3.27
2895 3462 3.585748 TTTCGTTGAGAAAGTTCGCAG 57.414 42.857 0.00 0.00 43.35 5.18
2908 3475 3.561503 AGTTCGCAGCGGTTTTTAATTC 58.438 40.909 16.42 0.00 0.00 2.17
3015 3582 9.856488 TCACTATTGTAGTACATCTTTCTTGAC 57.144 33.333 3.28 0.00 37.23 3.18
3109 3677 8.530311 ACTGGTTGCAATATGTATTTTGATGAA 58.470 29.630 0.59 0.00 0.00 2.57
3135 3703 8.679288 ATTTGATTGTCTCGAATTTGAACATC 57.321 30.769 9.90 9.89 34.81 3.06
3139 3707 6.859420 TTGTCTCGAATTTGAACATCAGAA 57.141 33.333 9.90 0.00 0.00 3.02
3151 3719 8.690203 TTTGAACATCAGAATGGAGACTAAAA 57.310 30.769 0.00 0.00 37.19 1.52
3152 3720 7.912056 TGAACATCAGAATGGAGACTAAAAG 57.088 36.000 0.00 0.00 37.19 2.27
3247 3817 9.832445 TTATGTGTTGATAGAGGTAAGGATTTC 57.168 33.333 0.00 0.00 0.00 2.17
3287 3857 8.026607 ACGTCGGATTTTTAATCATGACAAATT 58.973 29.630 0.00 0.00 0.00 1.82
3307 3877 1.227853 GACACCCGGGATGGCATAC 60.228 63.158 32.02 0.00 35.87 2.39
3308 3878 2.280797 CACCCGGGATGGCATACG 60.281 66.667 32.02 14.84 35.87 3.06
3317 3887 2.560504 GGATGGCATACGATGTTGTCA 58.439 47.619 0.00 0.00 0.00 3.58
3327 3897 1.726248 CGATGTTGTCACGAGCATGAA 59.274 47.619 0.00 0.00 0.00 2.57
3349 4080 6.431543 TGAAAATTTACTTCCGTAAGCATGGA 59.568 34.615 0.00 0.00 36.97 3.41
3367 4098 4.270245 TGGAAAATCCTTGCCATGTTTC 57.730 40.909 0.00 0.00 35.02 2.78
3368 4099 3.645212 TGGAAAATCCTTGCCATGTTTCA 59.355 39.130 0.00 0.00 35.02 2.69
3383 4118 5.474189 CCATGTTTCATTTTGCCAGGATTTT 59.526 36.000 0.00 0.00 0.00 1.82
3390 4125 3.681593 TTTGCCAGGATTTTCCATGTG 57.318 42.857 0.00 0.00 39.61 3.21
3413 4148 3.822167 TGCTGAAAGAAATGTGATGCTCA 59.178 39.130 0.00 0.00 34.07 4.26
3428 4163 3.251479 TGCTCACGACAGCATAATTCT 57.749 42.857 8.67 0.00 44.73 2.40
3446 4181 1.976404 TCTCATCCTGGGCATCAGATC 59.024 52.381 7.74 0.00 46.18 2.75
3468 4203 5.245531 TCTGTCATGCTTAAAAATCCGACT 58.754 37.500 0.00 0.00 0.00 4.18
3515 4252 3.686241 TGAAGTAGAATGTGTGCATGCTC 59.314 43.478 20.33 16.39 40.13 4.26
3521 4258 2.025589 ATGTGTGCATGCTCAGAGAG 57.974 50.000 22.00 0.00 33.37 3.20
3523 4260 1.337541 TGTGTGCATGCTCAGAGAGAC 60.338 52.381 22.00 10.24 0.00 3.36
3527 4264 1.622312 TGCATGCTCAGAGAGACAGTT 59.378 47.619 20.33 0.00 0.00 3.16
3703 4490 7.677747 GCATGTTGATCAAAATAAAATGGCAGG 60.678 37.037 10.35 2.89 0.00 4.85
3729 4639 4.157105 TGATGAAGTGAGATGTGCATTTGG 59.843 41.667 0.00 0.00 0.00 3.28
3790 6241 7.391554 TGAGAGAAATAGAAATTGTGAGGTTGG 59.608 37.037 0.00 0.00 0.00 3.77
3797 6248 5.630121 AGAAATTGTGAGGTTGGTGATGTA 58.370 37.500 0.00 0.00 0.00 2.29
3810 6262 3.181450 TGGTGATGTACATGTGTGGTGAA 60.181 43.478 14.43 0.00 0.00 3.18
3818 6270 2.158475 ACATGTGTGGTGAAGTGGGATT 60.158 45.455 0.00 0.00 0.00 3.01
3820 6272 2.582052 TGTGTGGTGAAGTGGGATTTC 58.418 47.619 0.00 0.00 0.00 2.17
3823 6275 2.441375 TGTGGTGAAGTGGGATTTCTGA 59.559 45.455 0.00 0.00 0.00 3.27
3949 6515 1.543802 TCTTATTGTTTGCCCCTTGCG 59.456 47.619 0.00 0.00 45.60 4.85
3964 6530 5.336610 GCCCCTTGCGGTTTAATTAAACTTA 60.337 40.000 30.37 18.71 43.73 2.24
4100 6738 7.667557 AGTGTGCATTCTCTAGTAGTAACAAA 58.332 34.615 0.00 0.00 0.00 2.83
4265 6903 1.754226 GAGAGTGGATGTCCTCCTGAC 59.246 57.143 0.09 0.00 45.21 3.51
4373 7011 3.067040 GTCAGCGGGTAAAACCAAAGAAA 59.933 43.478 0.00 0.00 41.02 2.52
4389 7027 5.111293 CAAAGAAAGAGTGGCATGTTTTGT 58.889 37.500 0.00 0.00 0.00 2.83
4394 7032 5.438761 AAGAGTGGCATGTTTTGTTAGAC 57.561 39.130 0.00 0.00 0.00 2.59
4426 7065 5.119743 GTCGTGGACTTACTGAAAACCATAC 59.880 44.000 0.00 0.00 0.00 2.39
4480 7119 2.553247 GCTATTATGACCTGCCTTCCCC 60.553 54.545 0.00 0.00 0.00 4.81
4570 7209 5.300034 TGATATGGATGTGGATTGCTGAAAC 59.700 40.000 0.00 0.00 0.00 2.78
4581 7220 4.442753 GGATTGCTGAAACCTTTGTCCAAA 60.443 41.667 0.00 0.00 0.00 3.28
4661 7300 3.244526 TGAACAGAAGCTTGATACAGCCA 60.245 43.478 2.10 0.00 41.12 4.75
4710 7352 6.144078 ATGCTTGTCATGTACACGATAGTA 57.856 37.500 0.00 0.00 40.35 1.82
4796 7438 4.780021 AGTGATAACATGTCTTCTCAGGGT 59.220 41.667 0.00 0.00 0.00 4.34
4855 7497 1.833630 AGAAGATCGAACCATGCCTCA 59.166 47.619 0.00 0.00 0.00 3.86
4860 7502 2.602257 TCGAACCATGCCTCACATAG 57.398 50.000 0.00 0.00 36.64 2.23
5043 7703 4.256920 TCACTTGAGGTACCTACGTCTAC 58.743 47.826 16.29 0.34 40.62 2.59
5190 7875 1.141053 GTAGTAATGGTGGGAGGCCTG 59.859 57.143 12.00 0.00 0.00 4.85
5228 7916 3.882444 TGGAAAGCTGAGATCAATGGAG 58.118 45.455 0.00 0.00 0.00 3.86
5434 8143 2.243221 CAATGGATCTCTTGGGGGAACT 59.757 50.000 0.00 0.00 0.00 3.01
5573 8306 1.153549 GGATGTGCGACAGGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
5751 8494 1.587043 GCCCAAGGCCGAAAGAGTTC 61.587 60.000 0.00 0.00 44.06 3.01
5821 8573 0.458370 GGCGATTGGTTTGACATGGC 60.458 55.000 0.00 0.00 0.00 4.40
5949 8704 2.772622 CCCATCCTAACCGCCCCT 60.773 66.667 0.00 0.00 0.00 4.79
6033 8799 2.442212 TGATGCTTGTCGTTTCCGTA 57.558 45.000 0.00 0.00 35.01 4.02
6034 8800 2.063266 TGATGCTTGTCGTTTCCGTAC 58.937 47.619 0.00 0.00 35.01 3.67
6035 8801 1.058695 GATGCTTGTCGTTTCCGTACG 59.941 52.381 8.69 8.69 42.68 3.67
6036 8802 0.248990 TGCTTGTCGTTTCCGTACGT 60.249 50.000 15.21 0.00 42.01 3.57
6039 8805 1.119635 TTGTCGTTTCCGTACGTTCG 58.880 50.000 15.21 7.68 42.01 3.95
6144 8917 2.541794 CGTGATGAGGATGTCTACACCG 60.542 54.545 0.00 0.00 32.32 4.94
6155 8953 1.130186 GTCTACACCGAGGACGAAGAC 59.870 57.143 0.00 0.19 42.66 3.01
6181 9015 3.492102 TTGAAGAAGCTGCAGGTTAGT 57.508 42.857 29.74 20.31 35.69 2.24
6186 9020 4.351874 AGAAGCTGCAGGTTAGTTACAA 57.648 40.909 29.74 0.00 35.69 2.41
6221 9097 8.495148 CCCGTTGAAAAGAAAATCATTTAAAGG 58.505 33.333 0.00 0.00 0.00 3.11
6308 10517 5.221145 CCTGCTATACCTTCTGACACTACTG 60.221 48.000 0.00 0.00 0.00 2.74
6434 11670 3.814504 ATTTCTTGGCTCAAAGAGGGA 57.185 42.857 0.00 0.00 37.48 4.20
6913 12557 1.261238 GGGAGCTCCGCCTATGCTAT 61.261 60.000 26.36 0.00 37.16 2.97
6976 12867 1.848886 GCCCGGAAAAAGGAGGAGGA 61.849 60.000 0.73 0.00 0.00 3.71
7064 13334 5.425217 TCCTATCTATTCTGCCTGTTGTTCA 59.575 40.000 0.00 0.00 0.00 3.18
7070 13340 4.836125 TTCTGCCTGTTGTTCATTTCTC 57.164 40.909 0.00 0.00 0.00 2.87
7071 13341 3.149196 TCTGCCTGTTGTTCATTTCTCC 58.851 45.455 0.00 0.00 0.00 3.71
7072 13342 1.879380 TGCCTGTTGTTCATTTCTCCG 59.121 47.619 0.00 0.00 0.00 4.63
7073 13343 1.401539 GCCTGTTGTTCATTTCTCCGC 60.402 52.381 0.00 0.00 0.00 5.54
7074 13344 1.879380 CCTGTTGTTCATTTCTCCGCA 59.121 47.619 0.00 0.00 0.00 5.69
7075 13345 2.489329 CCTGTTGTTCATTTCTCCGCAT 59.511 45.455 0.00 0.00 0.00 4.73
7076 13346 3.495193 CTGTTGTTCATTTCTCCGCATG 58.505 45.455 0.00 0.00 0.00 4.06
7077 13347 2.228582 TGTTGTTCATTTCTCCGCATGG 59.771 45.455 0.00 0.00 0.00 3.66
7078 13348 0.810648 TGTTCATTTCTCCGCATGGC 59.189 50.000 0.00 0.00 34.14 4.40
7079 13349 0.101219 GTTCATTTCTCCGCATGGCC 59.899 55.000 0.00 0.00 34.14 5.36
7080 13350 0.323269 TTCATTTCTCCGCATGGCCA 60.323 50.000 8.56 8.56 34.14 5.36
7081 13351 1.031571 TCATTTCTCCGCATGGCCAC 61.032 55.000 8.16 0.00 34.14 5.01
7082 13352 1.754234 ATTTCTCCGCATGGCCACC 60.754 57.895 8.16 0.10 34.14 4.61
7083 13353 4.776322 TTCTCCGCATGGCCACCG 62.776 66.667 8.16 14.72 34.14 4.94
7085 13355 4.552365 CTCCGCATGGCCACCGAT 62.552 66.667 24.61 0.00 34.14 4.18
7086 13356 4.545706 TCCGCATGGCCACCGATC 62.546 66.667 24.61 5.51 34.14 3.69
7088 13358 4.854924 CGCATGGCCACCGATCCA 62.855 66.667 19.83 0.00 36.70 3.41
7089 13359 3.211963 GCATGGCCACCGATCCAC 61.212 66.667 8.16 0.00 34.81 4.02
7090 13360 2.516930 CATGGCCACCGATCCACC 60.517 66.667 8.16 0.00 34.81 4.61
7091 13361 4.175337 ATGGCCACCGATCCACCG 62.175 66.667 8.16 0.00 34.81 4.94
7100 13370 3.846430 GATCCACCGGACGGGGAC 61.846 72.222 15.72 9.12 42.48 4.46
7124 13394 4.994471 CCGCACAGCTGCAGGTGA 62.994 66.667 43.33 0.00 44.50 4.02
7125 13395 3.420606 CGCACAGCTGCAGGTGAG 61.421 66.667 43.33 37.02 44.50 3.51
7126 13396 2.281345 GCACAGCTGCAGGTGAGT 60.281 61.111 43.33 25.16 45.66 3.41
7127 13397 2.323580 GCACAGCTGCAGGTGAGTC 61.324 63.158 43.33 28.73 45.66 3.36
7128 13398 1.670406 CACAGCTGCAGGTGAGTCC 60.670 63.158 43.33 14.56 45.66 3.85
7130 13400 1.079266 CAGCTGCAGGTGAGTCCTC 60.079 63.158 36.58 7.08 46.24 3.71
7131 13401 1.229145 AGCTGCAGGTGAGTCCTCT 60.229 57.895 19.45 0.00 46.24 3.69
7132 13402 0.835543 AGCTGCAGGTGAGTCCTCTT 60.836 55.000 19.45 0.00 46.24 2.85
7133 13403 0.390998 GCTGCAGGTGAGTCCTCTTC 60.391 60.000 17.12 0.00 46.24 2.87
7134 13404 0.972134 CTGCAGGTGAGTCCTCTTCA 59.028 55.000 5.57 0.00 46.24 3.02
7135 13405 0.972134 TGCAGGTGAGTCCTCTTCAG 59.028 55.000 0.00 0.00 46.24 3.02
7136 13406 0.248843 GCAGGTGAGTCCTCTTCAGG 59.751 60.000 0.00 0.00 46.24 3.86
7137 13407 1.638529 CAGGTGAGTCCTCTTCAGGT 58.361 55.000 0.00 0.00 46.24 4.00
7138 13408 1.974236 CAGGTGAGTCCTCTTCAGGTT 59.026 52.381 0.00 0.00 46.24 3.50
7139 13409 2.370189 CAGGTGAGTCCTCTTCAGGTTT 59.630 50.000 0.00 0.00 46.24 3.27
7140 13410 2.635427 AGGTGAGTCCTCTTCAGGTTTC 59.365 50.000 0.00 0.00 44.42 2.78
7141 13411 2.289756 GGTGAGTCCTCTTCAGGTTTCC 60.290 54.545 0.00 0.00 41.28 3.13
7142 13412 2.635427 GTGAGTCCTCTTCAGGTTTCCT 59.365 50.000 0.00 0.00 41.28 3.36
7158 13428 7.663043 AGGTTTCCTGACTCTAATTACTAGG 57.337 40.000 0.00 0.00 29.57 3.02
7159 13429 6.098552 AGGTTTCCTGACTCTAATTACTAGGC 59.901 42.308 0.00 0.00 29.57 3.93
7160 13430 6.282167 GTTTCCTGACTCTAATTACTAGGCC 58.718 44.000 0.00 0.00 0.00 5.19
7161 13431 5.405063 TCCTGACTCTAATTACTAGGCCT 57.595 43.478 11.78 11.78 0.00 5.19
7162 13432 6.526056 TCCTGACTCTAATTACTAGGCCTA 57.474 41.667 13.09 13.09 0.00 3.93
7163 13433 6.305411 TCCTGACTCTAATTACTAGGCCTAC 58.695 44.000 8.91 0.00 0.00 3.18
7164 13434 6.102910 TCCTGACTCTAATTACTAGGCCTACT 59.897 42.308 8.91 2.32 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.140536 CAAACTTCTTCCTTCCTTCAGCT 58.859 43.478 0.00 0.00 0.00 4.24
1 2 4.137543 TCAAACTTCTTCCTTCCTTCAGC 58.862 43.478 0.00 0.00 0.00 4.26
2 3 4.215185 GCTCAAACTTCTTCCTTCCTTCAG 59.785 45.833 0.00 0.00 0.00 3.02
3 4 4.137543 GCTCAAACTTCTTCCTTCCTTCA 58.862 43.478 0.00 0.00 0.00 3.02
4 5 4.137543 TGCTCAAACTTCTTCCTTCCTTC 58.862 43.478 0.00 0.00 0.00 3.46
5 6 4.170468 TGCTCAAACTTCTTCCTTCCTT 57.830 40.909 0.00 0.00 0.00 3.36
6 7 3.864789 TGCTCAAACTTCTTCCTTCCT 57.135 42.857 0.00 0.00 0.00 3.36
7 8 3.823304 ACATGCTCAAACTTCTTCCTTCC 59.177 43.478 0.00 0.00 0.00 3.46
8 9 4.377841 CGACATGCTCAAACTTCTTCCTTC 60.378 45.833 0.00 0.00 0.00 3.46
9 10 3.499918 CGACATGCTCAAACTTCTTCCTT 59.500 43.478 0.00 0.00 0.00 3.36
10 11 3.070018 CGACATGCTCAAACTTCTTCCT 58.930 45.455 0.00 0.00 0.00 3.36
11 12 2.160417 CCGACATGCTCAAACTTCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
12 13 2.808543 ACCGACATGCTCAAACTTCTTC 59.191 45.455 0.00 0.00 0.00 2.87
13 14 2.851195 ACCGACATGCTCAAACTTCTT 58.149 42.857 0.00 0.00 0.00 2.52
14 15 2.550830 ACCGACATGCTCAAACTTCT 57.449 45.000 0.00 0.00 0.00 2.85
15 16 3.326747 ACTACCGACATGCTCAAACTTC 58.673 45.455 0.00 0.00 0.00 3.01
16 17 3.402628 ACTACCGACATGCTCAAACTT 57.597 42.857 0.00 0.00 0.00 2.66
17 18 3.402628 AACTACCGACATGCTCAAACT 57.597 42.857 0.00 0.00 0.00 2.66
18 19 5.049954 TGTTTAACTACCGACATGCTCAAAC 60.050 40.000 0.00 0.00 0.00 2.93
19 20 5.049954 GTGTTTAACTACCGACATGCTCAAA 60.050 40.000 0.00 0.00 0.00 2.69
20 21 4.449743 GTGTTTAACTACCGACATGCTCAA 59.550 41.667 0.00 0.00 0.00 3.02
21 22 3.991773 GTGTTTAACTACCGACATGCTCA 59.008 43.478 0.00 0.00 0.00 4.26
22 23 3.991773 TGTGTTTAACTACCGACATGCTC 59.008 43.478 0.00 0.00 0.00 4.26
23 24 3.997762 TGTGTTTAACTACCGACATGCT 58.002 40.909 0.00 0.00 0.00 3.79
24 25 4.378046 CCTTGTGTTTAACTACCGACATGC 60.378 45.833 0.00 0.00 0.00 4.06
25 26 4.992319 TCCTTGTGTTTAACTACCGACATG 59.008 41.667 0.00 0.00 0.00 3.21
26 27 5.011329 TCTCCTTGTGTTTAACTACCGACAT 59.989 40.000 0.00 0.00 0.00 3.06
27 28 4.341806 TCTCCTTGTGTTTAACTACCGACA 59.658 41.667 0.00 0.00 0.00 4.35
28 29 4.874970 TCTCCTTGTGTTTAACTACCGAC 58.125 43.478 0.00 0.00 0.00 4.79
29 30 5.534207 TTCTCCTTGTGTTTAACTACCGA 57.466 39.130 0.00 0.00 0.00 4.69
30 31 6.607735 TTTTCTCCTTGTGTTTAACTACCG 57.392 37.500 0.00 0.00 0.00 4.02
34 35 8.568794 GCTCTATTTTTCTCCTTGTGTTTAACT 58.431 33.333 0.00 0.00 0.00 2.24
35 36 7.534239 CGCTCTATTTTTCTCCTTGTGTTTAAC 59.466 37.037 0.00 0.00 0.00 2.01
36 37 7.581476 CGCTCTATTTTTCTCCTTGTGTTTAA 58.419 34.615 0.00 0.00 0.00 1.52
37 38 6.348213 GCGCTCTATTTTTCTCCTTGTGTTTA 60.348 38.462 0.00 0.00 0.00 2.01
38 39 5.562890 GCGCTCTATTTTTCTCCTTGTGTTT 60.563 40.000 0.00 0.00 0.00 2.83
39 40 4.083271 GCGCTCTATTTTTCTCCTTGTGTT 60.083 41.667 0.00 0.00 0.00 3.32
40 41 3.437049 GCGCTCTATTTTTCTCCTTGTGT 59.563 43.478 0.00 0.00 0.00 3.72
41 42 3.686726 AGCGCTCTATTTTTCTCCTTGTG 59.313 43.478 2.64 0.00 0.00 3.33
42 43 3.944087 AGCGCTCTATTTTTCTCCTTGT 58.056 40.909 2.64 0.00 0.00 3.16
43 44 6.146347 GGTATAGCGCTCTATTTTTCTCCTTG 59.854 42.308 16.34 0.00 36.86 3.61
44 45 6.183360 TGGTATAGCGCTCTATTTTTCTCCTT 60.183 38.462 16.34 0.00 36.86 3.36
45 46 5.304614 TGGTATAGCGCTCTATTTTTCTCCT 59.695 40.000 16.34 0.00 36.86 3.69
46 47 5.539048 TGGTATAGCGCTCTATTTTTCTCC 58.461 41.667 16.34 4.76 36.86 3.71
47 48 7.478520 TTTGGTATAGCGCTCTATTTTTCTC 57.521 36.000 16.34 0.00 36.86 2.87
48 49 7.859325 TTTTGGTATAGCGCTCTATTTTTCT 57.141 32.000 16.34 0.00 36.86 2.52
49 50 9.813080 CTATTTTGGTATAGCGCTCTATTTTTC 57.187 33.333 16.34 0.00 36.86 2.29
50 51 9.338622 ACTATTTTGGTATAGCGCTCTATTTTT 57.661 29.630 16.34 0.00 36.86 1.94
51 52 8.774586 CACTATTTTGGTATAGCGCTCTATTTT 58.225 33.333 16.34 0.00 36.86 1.82
52 53 7.095187 GCACTATTTTGGTATAGCGCTCTATTT 60.095 37.037 16.34 0.00 36.86 1.40
53 54 6.369065 GCACTATTTTGGTATAGCGCTCTATT 59.631 38.462 16.34 0.00 36.86 1.73
54 55 5.869888 GCACTATTTTGGTATAGCGCTCTAT 59.130 40.000 16.34 5.31 38.89 1.98
55 56 5.227908 GCACTATTTTGGTATAGCGCTCTA 58.772 41.667 16.34 5.57 34.74 2.43
56 57 4.058817 GCACTATTTTGGTATAGCGCTCT 58.941 43.478 16.34 6.94 34.74 4.09
57 58 3.186613 GGCACTATTTTGGTATAGCGCTC 59.813 47.826 16.34 0.00 36.73 5.03
58 59 3.139077 GGCACTATTTTGGTATAGCGCT 58.861 45.455 17.26 17.26 36.73 5.92
59 60 2.096417 CGGCACTATTTTGGTATAGCGC 60.096 50.000 0.00 0.00 36.10 5.92
60 61 3.183775 GTCGGCACTATTTTGGTATAGCG 59.816 47.826 0.00 0.00 32.45 4.26
61 62 4.124238 TGTCGGCACTATTTTGGTATAGC 58.876 43.478 0.00 0.00 32.45 2.97
62 63 5.989168 TGATGTCGGCACTATTTTGGTATAG 59.011 40.000 0.00 0.00 34.85 1.31
63 64 5.919755 TGATGTCGGCACTATTTTGGTATA 58.080 37.500 0.00 0.00 0.00 1.47
64 65 4.776349 TGATGTCGGCACTATTTTGGTAT 58.224 39.130 0.00 0.00 0.00 2.73
65 66 4.209307 TGATGTCGGCACTATTTTGGTA 57.791 40.909 0.00 0.00 0.00 3.25
66 67 3.066291 TGATGTCGGCACTATTTTGGT 57.934 42.857 0.00 0.00 0.00 3.67
67 68 4.433186 TTTGATGTCGGCACTATTTTGG 57.567 40.909 0.00 0.00 0.00 3.28
68 69 7.701924 ACATATTTTGATGTCGGCACTATTTTG 59.298 33.333 0.00 0.00 34.97 2.44
69 70 7.771183 ACATATTTTGATGTCGGCACTATTTT 58.229 30.769 0.00 0.00 34.97 1.82
70 71 7.333528 ACATATTTTGATGTCGGCACTATTT 57.666 32.000 0.00 0.00 34.97 1.40
71 72 6.942532 ACATATTTTGATGTCGGCACTATT 57.057 33.333 0.00 0.00 34.97 1.73
72 73 6.942532 AACATATTTTGATGTCGGCACTAT 57.057 33.333 0.00 0.00 39.16 2.12
73 74 8.445275 AATAACATATTTTGATGTCGGCACTA 57.555 30.769 0.00 0.00 39.16 2.74
74 75 6.942532 ATAACATATTTTGATGTCGGCACT 57.057 33.333 0.00 0.00 39.16 4.40
75 76 7.323656 GCTAATAACATATTTTGATGTCGGCAC 59.676 37.037 0.00 0.00 39.16 5.01
76 77 7.012799 TGCTAATAACATATTTTGATGTCGGCA 59.987 33.333 0.00 0.00 39.16 5.69
77 78 7.359595 TGCTAATAACATATTTTGATGTCGGC 58.640 34.615 0.00 0.00 39.16 5.54
78 79 9.333497 CATGCTAATAACATATTTTGATGTCGG 57.667 33.333 0.00 0.00 39.16 4.79
79 80 8.843733 GCATGCTAATAACATATTTTGATGTCG 58.156 33.333 11.37 0.00 39.16 4.35
80 81 9.903682 AGCATGCTAATAACATATTTTGATGTC 57.096 29.630 21.21 0.00 39.16 3.06
96 97 9.539825 GCTATTAGTGTGATATAGCATGCTAAT 57.460 33.333 30.06 22.48 43.83 1.73
97 98 8.531146 TGCTATTAGTGTGATATAGCATGCTAA 58.469 33.333 30.06 19.16 47.00 3.09
98 99 8.066612 TGCTATTAGTGTGATATAGCATGCTA 57.933 34.615 28.72 28.72 47.00 3.49
99 100 6.939622 TGCTATTAGTGTGATATAGCATGCT 58.060 36.000 25.99 25.99 47.00 3.79
104 105 7.840342 AGCATTGCTATTAGTGTGATATAGC 57.160 36.000 10.00 0.00 44.36 2.97
119 120 3.004419 ACGTCTCGCTAATAGCATTGCTA 59.996 43.478 20.06 20.06 45.55 3.49
120 121 2.223829 ACGTCTCGCTAATAGCATTGCT 60.224 45.455 16.63 16.63 42.58 3.91
121 122 2.128035 ACGTCTCGCTAATAGCATTGC 58.872 47.619 13.15 0.00 42.58 3.56
122 123 3.551890 ACAACGTCTCGCTAATAGCATTG 59.448 43.478 13.15 8.46 42.58 2.82
123 124 3.782046 ACAACGTCTCGCTAATAGCATT 58.218 40.909 13.15 0.00 42.58 3.56
124 125 3.438297 ACAACGTCTCGCTAATAGCAT 57.562 42.857 13.15 0.00 42.58 3.79
125 126 2.933495 ACAACGTCTCGCTAATAGCA 57.067 45.000 13.15 0.00 42.58 3.49
126 127 3.481388 GTGTACAACGTCTCGCTAATAGC 59.519 47.826 1.41 1.41 38.02 2.97
127 128 4.906423 AGTGTACAACGTCTCGCTAATAG 58.094 43.478 0.00 0.00 0.00 1.73
128 129 4.952262 AGTGTACAACGTCTCGCTAATA 57.048 40.909 0.00 0.00 0.00 0.98
129 130 3.844577 AGTGTACAACGTCTCGCTAAT 57.155 42.857 0.00 0.00 0.00 1.73
130 131 4.747540 TTAGTGTACAACGTCTCGCTAA 57.252 40.909 0.00 0.09 32.80 3.09
131 132 4.952262 ATTAGTGTACAACGTCTCGCTA 57.048 40.909 0.00 0.00 0.00 4.26
132 133 3.844577 ATTAGTGTACAACGTCTCGCT 57.155 42.857 0.00 0.00 0.00 4.93
133 134 7.848716 AATATATTAGTGTACAACGTCTCGC 57.151 36.000 0.00 0.00 0.00 5.03
152 153 9.982651 GTACTGAGAATTGCCTCACTAAATATA 57.017 33.333 0.00 0.00 38.18 0.86
153 154 7.653713 CGTACTGAGAATTGCCTCACTAAATAT 59.346 37.037 0.00 0.00 38.18 1.28
154 155 6.978659 CGTACTGAGAATTGCCTCACTAAATA 59.021 38.462 0.00 0.00 38.18 1.40
155 156 5.812642 CGTACTGAGAATTGCCTCACTAAAT 59.187 40.000 0.00 0.00 38.18 1.40
156 157 5.168569 CGTACTGAGAATTGCCTCACTAAA 58.831 41.667 0.00 0.00 38.18 1.85
157 158 4.381612 CCGTACTGAGAATTGCCTCACTAA 60.382 45.833 0.00 0.00 38.18 2.24
158 159 3.130516 CCGTACTGAGAATTGCCTCACTA 59.869 47.826 0.00 0.00 38.18 2.74
159 160 2.093973 CCGTACTGAGAATTGCCTCACT 60.094 50.000 0.00 0.00 38.18 3.41
160 161 2.271800 CCGTACTGAGAATTGCCTCAC 58.728 52.381 0.00 0.00 38.18 3.51
161 162 1.405526 GCCGTACTGAGAATTGCCTCA 60.406 52.381 0.00 0.00 40.57 3.86
162 163 1.291132 GCCGTACTGAGAATTGCCTC 58.709 55.000 0.00 0.00 0.00 4.70
163 164 0.613260 TGCCGTACTGAGAATTGCCT 59.387 50.000 0.00 0.00 0.00 4.75
164 165 1.668419 ATGCCGTACTGAGAATTGCC 58.332 50.000 0.00 0.00 0.00 4.52
165 166 2.221981 GCTATGCCGTACTGAGAATTGC 59.778 50.000 0.00 0.00 0.00 3.56
166 167 3.457234 TGCTATGCCGTACTGAGAATTG 58.543 45.455 0.00 0.00 0.00 2.32
167 168 3.819564 TGCTATGCCGTACTGAGAATT 57.180 42.857 0.00 0.00 0.00 2.17
168 169 3.657634 CATGCTATGCCGTACTGAGAAT 58.342 45.455 0.00 0.00 0.00 2.40
169 170 3.097877 CATGCTATGCCGTACTGAGAA 57.902 47.619 0.00 0.00 0.00 2.87
170 171 2.800881 CATGCTATGCCGTACTGAGA 57.199 50.000 0.00 0.00 0.00 3.27
186 187 3.553511 GCTAATAGCACGCCTATAGCATG 59.446 47.826 7.49 0.00 40.96 4.06
187 188 3.735208 CGCTAATAGCACGCCTATAGCAT 60.735 47.826 13.15 0.00 42.58 3.79
188 189 2.415491 CGCTAATAGCACGCCTATAGCA 60.415 50.000 13.15 2.23 42.58 3.49
189 190 2.159421 TCGCTAATAGCACGCCTATAGC 60.159 50.000 13.15 7.23 42.58 2.97
190 191 3.759527 TCGCTAATAGCACGCCTATAG 57.240 47.619 13.15 0.00 42.58 1.31
191 192 3.733988 GCATCGCTAATAGCACGCCTATA 60.734 47.826 13.15 0.00 42.58 1.31
192 193 2.881074 CATCGCTAATAGCACGCCTAT 58.119 47.619 13.15 0.00 42.58 2.57
193 194 1.668919 GCATCGCTAATAGCACGCCTA 60.669 52.381 13.15 0.00 42.58 3.93
194 195 0.946221 GCATCGCTAATAGCACGCCT 60.946 55.000 13.15 0.00 42.58 5.52
195 196 0.946221 AGCATCGCTAATAGCACGCC 60.946 55.000 13.15 0.00 42.58 5.68
196 197 1.698165 TAGCATCGCTAATAGCACGC 58.302 50.000 13.15 10.73 42.58 5.34
197 198 3.483922 GCTATAGCATCGCTAATAGCACG 59.516 47.826 20.01 0.86 44.62 5.34
227 228 4.705991 ACCCTTCGTTTAACCACTGAAAAA 59.294 37.500 0.00 0.00 0.00 1.94
228 229 4.271661 ACCCTTCGTTTAACCACTGAAAA 58.728 39.130 0.00 0.00 0.00 2.29
229 230 3.888583 ACCCTTCGTTTAACCACTGAAA 58.111 40.909 0.00 0.00 0.00 2.69
230 231 3.564053 ACCCTTCGTTTAACCACTGAA 57.436 42.857 0.00 0.00 0.00 3.02
231 232 3.642848 ACTACCCTTCGTTTAACCACTGA 59.357 43.478 0.00 0.00 0.00 3.41
232 233 3.744426 CACTACCCTTCGTTTAACCACTG 59.256 47.826 0.00 0.00 0.00 3.66
233 234 3.804759 GCACTACCCTTCGTTTAACCACT 60.805 47.826 0.00 0.00 0.00 4.00
234 235 2.481568 GCACTACCCTTCGTTTAACCAC 59.518 50.000 0.00 0.00 0.00 4.16
235 236 2.369532 AGCACTACCCTTCGTTTAACCA 59.630 45.455 0.00 0.00 0.00 3.67
236 237 3.049708 AGCACTACCCTTCGTTTAACC 57.950 47.619 0.00 0.00 0.00 2.85
237 238 4.386954 GTGTAGCACTACCCTTCGTTTAAC 59.613 45.833 5.40 0.00 35.26 2.01
238 239 4.281688 AGTGTAGCACTACCCTTCGTTTAA 59.718 41.667 5.40 0.00 43.46 1.52
239 240 3.828451 AGTGTAGCACTACCCTTCGTTTA 59.172 43.478 5.40 0.00 43.46 2.01
240 241 2.631545 AGTGTAGCACTACCCTTCGTTT 59.368 45.455 5.40 0.00 43.46 3.60
241 242 2.245582 AGTGTAGCACTACCCTTCGTT 58.754 47.619 5.40 0.00 43.46 3.85
242 243 1.920610 AGTGTAGCACTACCCTTCGT 58.079 50.000 5.40 0.00 43.46 3.85
243 244 3.730061 CGTAAGTGTAGCACTACCCTTCG 60.730 52.174 8.53 8.75 44.62 3.79
244 245 3.428589 CCGTAAGTGTAGCACTACCCTTC 60.429 52.174 8.53 2.19 44.62 3.46
245 246 2.494870 CCGTAAGTGTAGCACTACCCTT 59.505 50.000 9.89 9.89 44.62 3.95
246 247 2.097825 CCGTAAGTGTAGCACTACCCT 58.902 52.381 5.40 0.00 44.62 4.34
247 248 1.135721 CCCGTAAGTGTAGCACTACCC 59.864 57.143 5.40 0.00 44.62 3.69
248 249 1.821136 ACCCGTAAGTGTAGCACTACC 59.179 52.381 5.40 0.00 44.62 3.18
249 250 3.582714 AACCCGTAAGTGTAGCACTAC 57.417 47.619 1.97 0.70 44.62 2.73
250 251 3.306225 CCAAACCCGTAAGTGTAGCACTA 60.306 47.826 1.97 0.00 44.62 2.74
252 253 1.802365 CCAAACCCGTAAGTGTAGCAC 59.198 52.381 0.00 0.00 34.10 4.40
253 254 1.878948 GCCAAACCCGTAAGTGTAGCA 60.879 52.381 0.00 0.00 0.00 3.49
254 255 0.800631 GCCAAACCCGTAAGTGTAGC 59.199 55.000 0.00 0.00 0.00 3.58
255 256 2.073816 CAGCCAAACCCGTAAGTGTAG 58.926 52.381 0.00 0.00 0.00 2.74
256 257 1.693062 TCAGCCAAACCCGTAAGTGTA 59.307 47.619 0.00 0.00 0.00 2.90
257 258 0.470766 TCAGCCAAACCCGTAAGTGT 59.529 50.000 0.00 0.00 0.00 3.55
258 259 0.872388 GTCAGCCAAACCCGTAAGTG 59.128 55.000 0.00 0.00 0.00 3.16
259 260 0.470766 TGTCAGCCAAACCCGTAAGT 59.529 50.000 0.00 0.00 0.00 2.24
260 261 0.872388 GTGTCAGCCAAACCCGTAAG 59.128 55.000 0.00 0.00 0.00 2.34
261 262 0.470766 AGTGTCAGCCAAACCCGTAA 59.529 50.000 0.00 0.00 0.00 3.18
262 263 1.001181 GTAGTGTCAGCCAAACCCGTA 59.999 52.381 0.00 0.00 0.00 4.02
263 264 0.250166 GTAGTGTCAGCCAAACCCGT 60.250 55.000 0.00 0.00 0.00 5.28
264 265 1.289109 CGTAGTGTCAGCCAAACCCG 61.289 60.000 0.00 0.00 0.00 5.28
265 266 0.953960 CCGTAGTGTCAGCCAAACCC 60.954 60.000 0.00 0.00 0.00 4.11
266 267 0.953960 CCCGTAGTGTCAGCCAAACC 60.954 60.000 0.00 0.00 0.00 3.27
267 268 0.250166 ACCCGTAGTGTCAGCCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
268 269 0.470766 AACCCGTAGTGTCAGCCAAA 59.529 50.000 0.00 0.00 0.00 3.28
269 270 0.250124 CAACCCGTAGTGTCAGCCAA 60.250 55.000 0.00 0.00 0.00 4.52
270 271 1.116536 TCAACCCGTAGTGTCAGCCA 61.117 55.000 0.00 0.00 0.00 4.75
271 272 0.249398 ATCAACCCGTAGTGTCAGCC 59.751 55.000 0.00 0.00 0.00 4.85
272 273 1.359848 CATCAACCCGTAGTGTCAGC 58.640 55.000 0.00 0.00 0.00 4.26
273 274 1.337728 TGCATCAACCCGTAGTGTCAG 60.338 52.381 0.00 0.00 0.00 3.51
274 275 0.682292 TGCATCAACCCGTAGTGTCA 59.318 50.000 0.00 0.00 0.00 3.58
275 276 1.463444 GTTGCATCAACCCGTAGTGTC 59.537 52.381 0.00 0.00 38.30 3.67
276 277 1.202710 TGTTGCATCAACCCGTAGTGT 60.203 47.619 7.17 0.00 42.96 3.55
277 278 1.518325 TGTTGCATCAACCCGTAGTG 58.482 50.000 7.17 0.00 42.96 2.74
278 279 2.290008 TGATGTTGCATCAACCCGTAGT 60.290 45.455 9.10 0.00 42.96 2.73
279 280 2.355197 TGATGTTGCATCAACCCGTAG 58.645 47.619 9.10 0.00 42.96 3.51
280 281 2.481289 TGATGTTGCATCAACCCGTA 57.519 45.000 9.10 0.00 42.96 4.02
281 282 1.745087 GATGATGTTGCATCAACCCGT 59.255 47.619 14.62 0.00 42.96 5.28
282 283 2.019249 AGATGATGTTGCATCAACCCG 58.981 47.619 14.62 0.00 45.52 5.28
283 284 4.202441 ACTAGATGATGTTGCATCAACCC 58.798 43.478 14.62 8.13 45.52 4.11
284 285 5.449588 CCAACTAGATGATGTTGCATCAACC 60.450 44.000 14.62 10.14 45.52 3.77
285 286 5.355071 TCCAACTAGATGATGTTGCATCAAC 59.645 40.000 14.62 12.27 45.52 3.18
286 287 5.499313 TCCAACTAGATGATGTTGCATCAA 58.501 37.500 14.62 0.00 45.52 2.57
287 288 5.101648 TCCAACTAGATGATGTTGCATCA 57.898 39.130 13.27 13.27 45.52 3.07
288 289 6.441093 TTTCCAACTAGATGATGTTGCATC 57.559 37.500 0.79 2.44 43.88 3.91
289 290 5.163581 GCTTTCCAACTAGATGATGTTGCAT 60.164 40.000 0.79 0.00 41.34 3.96
290 291 4.156556 GCTTTCCAACTAGATGATGTTGCA 59.843 41.667 0.79 0.00 41.34 4.08
347 348 4.035102 GCACCCCTCCCACTCACC 62.035 72.222 0.00 0.00 0.00 4.02
348 349 2.142292 AATGCACCCCTCCCACTCAC 62.142 60.000 0.00 0.00 0.00 3.51
390 393 5.052693 TCTGCTAGATAATTTGCCCACAT 57.947 39.130 0.00 0.00 0.00 3.21
395 398 5.240403 CCCTTTCTCTGCTAGATAATTTGCC 59.760 44.000 0.00 0.00 33.05 4.52
407 410 6.434340 ACGATAAAATTTTCCCTTTCTCTGCT 59.566 34.615 6.72 0.00 0.00 4.24
522 525 2.591715 ATAAGGACATGGCGCGCC 60.592 61.111 42.35 42.35 0.00 6.53
527 530 1.884579 CCAGCATGATAAGGACATGGC 59.115 52.381 0.00 0.00 43.39 4.40
556 571 9.944663 TTATTGTCAGATAAAATAAATCCACGC 57.055 29.630 0.00 0.00 0.00 5.34
615 633 3.865745 CCCAACGAGTGATTACTTAGCAG 59.134 47.826 0.00 0.00 37.25 4.24
629 647 4.358494 TGTTTTGTTAACACCCAACGAG 57.642 40.909 8.07 0.00 0.00 4.18
658 676 3.385193 CCACTTGGTTAAGGCCAAAAG 57.615 47.619 5.01 1.46 46.59 2.27
688 706 7.325821 CGTGCAGAATTGTGTAATTGTTAATGT 59.674 33.333 4.33 0.00 36.66 2.71
698 716 4.447724 GTCTCTTCGTGCAGAATTGTGTAA 59.552 41.667 4.33 0.00 38.34 2.41
705 726 2.476619 CGTTTGTCTCTTCGTGCAGAAT 59.523 45.455 0.00 0.00 38.34 2.40
712 733 0.526954 ACGTGCGTTTGTCTCTTCGT 60.527 50.000 0.00 0.00 0.00 3.85
714 735 3.784488 CTTAACGTGCGTTTGTCTCTTC 58.216 45.455 15.16 0.00 39.31 2.87
747 768 6.141211 GTGCATTGATTCATGTAAACGCATAG 59.859 38.462 0.00 0.00 0.00 2.23
755 776 5.571277 CATGACGTGCATTGATTCATGTAA 58.429 37.500 0.00 0.00 39.06 2.41
757 778 4.023739 CATGACGTGCATTGATTCATGT 57.976 40.909 0.00 0.00 39.06 3.21
772 793 3.785521 CGTTAAATGAACATGGCATGACG 59.214 43.478 32.74 23.39 37.99 4.35
775 796 2.859538 GGCGTTAAATGAACATGGCATG 59.140 45.455 25.31 25.31 37.99 4.06
777 798 2.166829 AGGCGTTAAATGAACATGGCA 58.833 42.857 0.00 0.00 37.99 4.92
780 801 6.603237 TGATCTAGGCGTTAAATGAACATG 57.397 37.500 0.00 0.00 37.99 3.21
781 802 7.283127 ACAATGATCTAGGCGTTAAATGAACAT 59.717 33.333 0.00 0.00 37.99 2.71
782 803 6.597672 ACAATGATCTAGGCGTTAAATGAACA 59.402 34.615 0.00 0.00 37.99 3.18
783 804 6.907212 CACAATGATCTAGGCGTTAAATGAAC 59.093 38.462 0.00 0.00 34.41 3.18
784 805 6.821160 TCACAATGATCTAGGCGTTAAATGAA 59.179 34.615 0.00 0.00 0.00 2.57
785 806 6.345298 TCACAATGATCTAGGCGTTAAATGA 58.655 36.000 0.00 0.00 0.00 2.57
786 807 6.603237 TCACAATGATCTAGGCGTTAAATG 57.397 37.500 0.00 0.00 0.00 2.32
787 808 7.807977 AATCACAATGATCTAGGCGTTAAAT 57.192 32.000 0.00 0.00 35.76 1.40
788 809 7.624360 AAATCACAATGATCTAGGCGTTAAA 57.376 32.000 0.00 0.00 35.76 1.52
789 810 8.902540 ATAAATCACAATGATCTAGGCGTTAA 57.097 30.769 0.00 0.00 35.76 2.01
812 833 9.511144 CGTGCGGTCATAATATTCAGTTATATA 57.489 33.333 0.00 0.00 0.00 0.86
813 834 8.033038 ACGTGCGGTCATAATATTCAGTTATAT 58.967 33.333 0.00 0.00 0.00 0.86
814 835 7.372714 ACGTGCGGTCATAATATTCAGTTATA 58.627 34.615 0.00 0.00 0.00 0.98
815 836 6.220930 ACGTGCGGTCATAATATTCAGTTAT 58.779 36.000 0.00 0.00 0.00 1.89
816 837 5.593968 ACGTGCGGTCATAATATTCAGTTA 58.406 37.500 0.00 0.00 0.00 2.24
817 838 4.439057 ACGTGCGGTCATAATATTCAGTT 58.561 39.130 0.00 0.00 0.00 3.16
818 839 4.054780 ACGTGCGGTCATAATATTCAGT 57.945 40.909 0.00 0.00 0.00 3.41
819 840 5.387035 CGTAACGTGCGGTCATAATATTCAG 60.387 44.000 5.06 0.00 0.00 3.02
820 841 4.441744 CGTAACGTGCGGTCATAATATTCA 59.558 41.667 5.06 0.00 0.00 2.57
821 842 4.143473 CCGTAACGTGCGGTCATAATATTC 60.143 45.833 19.73 0.00 43.84 1.75
822 843 3.737266 CCGTAACGTGCGGTCATAATATT 59.263 43.478 19.73 0.00 43.84 1.28
823 844 3.311106 CCGTAACGTGCGGTCATAATAT 58.689 45.455 19.73 0.00 43.84 1.28
824 845 2.730069 CCGTAACGTGCGGTCATAATA 58.270 47.619 19.73 0.00 43.84 0.98
825 846 1.563111 CCGTAACGTGCGGTCATAAT 58.437 50.000 19.73 0.00 43.84 1.28
826 847 3.033114 CCGTAACGTGCGGTCATAA 57.967 52.632 19.73 0.00 43.84 1.90
827 848 4.790051 CCGTAACGTGCGGTCATA 57.210 55.556 19.73 0.00 43.84 2.15
835 856 4.430765 AGGCCGCTCCGTAACGTG 62.431 66.667 0.00 0.00 40.77 4.49
836 857 4.430765 CAGGCCGCTCCGTAACGT 62.431 66.667 0.00 0.00 40.77 3.99
838 859 2.229690 TTACCAGGCCGCTCCGTAAC 62.230 60.000 0.00 0.00 40.77 2.50
839 860 1.543065 TTTACCAGGCCGCTCCGTAA 61.543 55.000 0.00 0.00 40.77 3.18
840 861 1.983481 TTTACCAGGCCGCTCCGTA 60.983 57.895 0.00 0.00 40.77 4.02
841 862 3.315949 TTTACCAGGCCGCTCCGT 61.316 61.111 0.00 0.00 40.77 4.69
842 863 2.818274 GTTTACCAGGCCGCTCCG 60.818 66.667 0.00 0.00 40.77 4.63
843 864 2.791501 TTCGTTTACCAGGCCGCTCC 62.792 60.000 0.00 0.00 0.00 4.70
844 865 0.952010 TTTCGTTTACCAGGCCGCTC 60.952 55.000 0.00 0.00 0.00 5.03
845 866 0.322187 ATTTCGTTTACCAGGCCGCT 60.322 50.000 0.00 0.00 0.00 5.52
846 867 0.179174 CATTTCGTTTACCAGGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
847 868 0.179174 GCATTTCGTTTACCAGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
848 869 0.885196 TGCATTTCGTTTACCAGGCC 59.115 50.000 0.00 0.00 0.00 5.19
849 870 2.939460 ATGCATTTCGTTTACCAGGC 57.061 45.000 0.00 0.00 0.00 4.85
850 871 7.644986 TTTTTAATGCATTTCGTTTACCAGG 57.355 32.000 18.75 0.00 0.00 4.45
926 949 1.068816 GGTTGATGTACGTTTGGGTGC 60.069 52.381 0.00 0.00 0.00 5.01
976 999 4.462834 GGCTCCCTTGCTAGTAATTTTTGT 59.537 41.667 0.00 0.00 0.00 2.83
977 1000 4.462483 TGGCTCCCTTGCTAGTAATTTTTG 59.538 41.667 0.00 0.00 0.00 2.44
987 1010 0.767375 GATCCATGGCTCCCTTGCTA 59.233 55.000 6.96 0.00 0.00 3.49
1095 1124 4.647611 TCTCTTTCTCGAGAGACTTGACT 58.352 43.478 15.94 0.00 45.39 3.41
1158 1187 3.241530 TCAAGCTGCTCCCGTGGT 61.242 61.111 1.00 0.00 0.00 4.16
1173 1202 1.290324 GAGCTTGACCTGCTCGTCA 59.710 57.895 2.74 2.74 45.73 4.35
1260 1289 1.985116 AGGCTCAGAACCCTCGTCC 60.985 63.158 0.00 0.00 0.00 4.79
1346 1377 0.390492 ATCAGCGATCTCATGGCGAA 59.610 50.000 0.00 0.00 39.14 4.70
1643 1674 3.117474 ACCTCCGATCTTCTCATAGACCA 60.117 47.826 0.00 0.00 0.00 4.02
1692 1723 1.587054 CTCAGCCTTTCGACCGACT 59.413 57.895 0.00 0.00 0.00 4.18
1752 1843 4.597004 ACATGATGAGCTCACTTCCATTT 58.403 39.130 20.97 10.27 36.48 2.32
1835 1926 2.029918 GGCCATCAAAAAGTGAGTGACC 60.030 50.000 0.00 0.00 40.43 4.02
1869 1982 8.558700 CCCAAATACCAATGAAAAGAAAGTTTG 58.441 33.333 0.00 0.00 0.00 2.93
1873 1987 7.003402 TCCCCAAATACCAATGAAAAGAAAG 57.997 36.000 0.00 0.00 0.00 2.62
2016 2182 5.294306 CAGTGCTAGAACAAAGAGTCACAAA 59.706 40.000 3.00 0.00 0.00 2.83
2017 2183 4.811024 CAGTGCTAGAACAAAGAGTCACAA 59.189 41.667 3.00 0.00 0.00 3.33
2019 2185 4.210120 CACAGTGCTAGAACAAAGAGTCAC 59.790 45.833 3.00 0.00 0.00 3.67
2100 2315 6.802348 CGCTAAGTCGACATAATATGCTAAGT 59.198 38.462 19.50 0.00 0.00 2.24
2119 2347 9.569212 GATAGATTTCGTAAAATTGTCGCTAAG 57.431 33.333 0.00 0.00 35.21 2.18
2122 2350 6.537301 TGGATAGATTTCGTAAAATTGTCGCT 59.463 34.615 0.00 0.00 35.21 4.93
2160 2390 4.644685 AGTGTAGTTGTGGCAATTGAGTTT 59.355 37.500 10.34 0.00 0.00 2.66
2183 2413 2.038952 GACATGGCCCATGAGCAGTATA 59.961 50.000 29.99 0.00 43.81 1.47
2189 2419 0.178998 ATCTGACATGGCCCATGAGC 60.179 55.000 29.99 19.97 43.81 4.26
2230 2461 0.326264 GGCTGGATTGTCAGTCAGGT 59.674 55.000 0.00 0.00 39.06 4.00
2269 2500 6.971726 TCTTAGAACTAACAAGACAGACCA 57.028 37.500 0.00 0.00 0.00 4.02
2312 2543 4.214119 CACTTAGTTGTGGTCTTGTGATGG 59.786 45.833 0.00 0.00 34.56 3.51
2398 2629 9.628746 TTCATATTGTATGAAATGCATATGTGC 57.371 29.630 7.61 7.61 39.17 4.57
2452 2705 7.226720 GGTGGCCTCATATATTTCATAATACCG 59.773 40.741 3.32 0.00 0.00 4.02
2457 2710 8.449423 ACTAGGTGGCCTCATATATTTCATAA 57.551 34.615 3.32 0.00 34.61 1.90
2611 2878 9.884465 CTTTTTCTACTTTTGAGATACCACAAG 57.116 33.333 0.00 0.00 31.94 3.16
2685 2952 4.957327 AGTCTCCAGGTCTCAAATACTACC 59.043 45.833 0.00 0.00 0.00 3.18
2769 3335 8.959548 CATGTAAATACCATGCCACATATATGT 58.040 33.333 12.75 12.75 42.84 2.29
2785 3351 9.619316 TTAATGCAGACAAACACATGTAAATAC 57.381 29.630 0.00 0.00 32.57 1.89
2873 3440 4.339429 CTGCGAACTTTCTCAACGAAAAA 58.661 39.130 0.00 0.00 40.87 1.94
2885 3452 3.423996 TTAAAAACCGCTGCGAACTTT 57.576 38.095 25.45 19.24 0.00 2.66
2895 3462 6.586082 AGTCATGTCATTGAATTAAAAACCGC 59.414 34.615 0.00 0.00 0.00 5.68
2908 3475 6.367695 TGAACCGTTAGTAAGTCATGTCATTG 59.632 38.462 0.00 0.00 0.00 2.82
3005 3572 1.766496 ACCTTCCACGGTCAAGAAAGA 59.234 47.619 0.00 0.00 29.14 2.52
3080 3647 8.531622 TCAAAATACATATTGCAACCAGTTTG 57.468 30.769 0.00 7.58 38.37 2.93
3109 3677 9.132521 GATGTTCAAATTCGAGACAATCAAATT 57.867 29.630 0.00 0.00 0.00 1.82
3222 3790 8.141909 CGAAATCCTTACCTCTATCAACACATA 58.858 37.037 0.00 0.00 0.00 2.29
3236 3806 5.007724 CCAGATTTGTAGCGAAATCCTTACC 59.992 44.000 12.52 0.00 41.45 2.85
3247 3817 0.914551 CGACGTCCAGATTTGTAGCG 59.085 55.000 10.58 0.00 0.00 4.26
3274 3844 4.321899 CCGGGTGTCAAATTTGTCATGATT 60.322 41.667 18.74 0.00 0.00 2.57
3287 3857 1.275421 TATGCCATCCCGGGTGTCAA 61.275 55.000 22.86 0.00 34.06 3.18
3307 3877 1.349234 TCATGCTCGTGACAACATCG 58.651 50.000 0.00 0.00 0.00 3.84
3308 3878 3.811722 TTTCATGCTCGTGACAACATC 57.188 42.857 0.00 0.00 0.00 3.06
3317 3887 4.454504 ACGGAAGTAAATTTTCATGCTCGT 59.545 37.500 0.00 0.00 46.88 4.18
3349 4080 6.515365 GCAAAATGAAACATGGCAAGGATTTT 60.515 34.615 0.00 0.00 0.00 1.82
3367 4098 4.393680 CACATGGAAAATCCTGGCAAAATG 59.606 41.667 0.00 0.00 37.46 2.32
3368 4099 4.041938 ACACATGGAAAATCCTGGCAAAAT 59.958 37.500 0.00 0.00 37.46 1.82
3383 4118 3.890756 ACATTTCTTTCAGCACACATGGA 59.109 39.130 0.00 0.00 0.00 3.41
3390 4125 4.164294 GAGCATCACATTTCTTTCAGCAC 58.836 43.478 0.00 0.00 33.17 4.40
3413 4148 4.375272 CAGGATGAGAATTATGCTGTCGT 58.625 43.478 0.00 0.00 39.69 4.34
3428 4163 1.697982 CAGATCTGATGCCCAGGATGA 59.302 52.381 18.34 0.00 43.12 2.92
3446 4181 5.551760 AGTCGGATTTTTAAGCATGACAG 57.448 39.130 0.00 0.00 0.00 3.51
3468 4203 9.179552 CATCAACGTGAATGTTAAAAATCTGAA 57.820 29.630 0.00 0.00 0.00 3.02
3499 4236 2.027469 TCTCTGAGCATGCACACATTCT 60.027 45.455 21.98 0.00 32.87 2.40
3515 4252 6.506500 AATGCCATTTAAACTGTCTCTCTG 57.493 37.500 0.00 0.00 0.00 3.35
3521 4258 6.873076 TCATGGAAAATGCCATTTAAACTGTC 59.127 34.615 2.54 0.00 46.29 3.51
3523 4260 7.520686 GTTCATGGAAAATGCCATTTAAACTG 58.479 34.615 2.54 0.54 46.29 3.16
3527 4264 5.788450 ACGTTCATGGAAAATGCCATTTAA 58.212 33.333 2.54 0.00 46.29 1.52
3675 4416 6.962678 GCCATTTTATTTTGATCAACATGCAC 59.037 34.615 15.79 1.88 0.00 4.57
3703 4490 3.076621 TGCACATCTCACTTCATCAACC 58.923 45.455 0.00 0.00 0.00 3.77
3790 6241 4.065088 ACTTCACCACACATGTACATCAC 58.935 43.478 5.07 0.00 0.00 3.06
3797 6248 0.843309 TCCCACTTCACCACACATGT 59.157 50.000 0.00 0.00 0.00 3.21
3810 6262 5.246981 TCTCAACATTCAGAAATCCCACT 57.753 39.130 0.00 0.00 0.00 4.00
4100 6738 2.418628 CGTGATTAACCGACTGCCAAAT 59.581 45.455 0.00 0.00 0.00 2.32
4155 6793 9.250624 GTAAATTGAATCATTAGTAGACGAGCT 57.749 33.333 0.00 0.00 0.00 4.09
4373 7011 4.718961 AGTCTAACAAAACATGCCACTCT 58.281 39.130 0.00 0.00 0.00 3.24
4389 7027 4.597004 AGTCCACGACCAATAGAGTCTAA 58.403 43.478 3.45 0.00 32.18 2.10
4394 7032 4.398358 TCAGTAAGTCCACGACCAATAGAG 59.602 45.833 0.00 0.00 32.18 2.43
4426 7065 4.637387 ATCCTTATCATCTCCTTGGCAG 57.363 45.455 0.00 0.00 0.00 4.85
4581 7220 7.010339 AGAGACTAGTATTTGCTTTTCCACT 57.990 36.000 0.00 0.00 0.00 4.00
4710 7352 8.049117 TGACAAGGAGCAAATTAGATCAAGTAT 58.951 33.333 0.00 0.00 0.00 2.12
4796 7438 2.922740 GGGATAACCTGCGGACATTA 57.077 50.000 0.00 0.00 35.85 1.90
4855 7497 6.264292 CACTTGTCCTATACTCTCAGCTATGT 59.736 42.308 0.00 0.00 0.00 2.29
4860 7502 4.037446 CCTCACTTGTCCTATACTCTCAGC 59.963 50.000 0.00 0.00 0.00 4.26
5043 7703 2.163815 ACTCAGTAATTCCGTGTCGAGG 59.836 50.000 0.00 0.00 0.00 4.63
5190 7875 3.845781 TCCAATACCATCTGGAAGCTC 57.154 47.619 2.55 0.00 38.81 4.09
5228 7916 5.863935 GCCAACTTTGATCTTATTCAACACC 59.136 40.000 0.00 0.00 35.42 4.16
5457 8166 0.821301 TTGCGCATGACAAACTCCCA 60.821 50.000 12.75 0.00 0.00 4.37
5751 8494 1.867233 CCGCAAACCGATATGGAGAAG 59.133 52.381 0.00 0.00 42.00 2.85
5821 8573 1.146263 GACGGCAGGTTCCCTATGG 59.854 63.158 0.00 0.00 29.64 2.74
5927 8679 1.223487 GCGGTTAGGATGGGCAAGA 59.777 57.895 0.00 0.00 0.00 3.02
5995 8761 7.352951 AGCATCATGGCTTTTAATGACGTAGT 61.353 38.462 0.00 0.00 44.26 2.73
5996 8762 5.008019 AGCATCATGGCTTTTAATGACGTAG 59.992 40.000 0.00 0.00 42.71 3.51
6033 8799 2.268298 CATAAAGGCACTAGCGAACGT 58.732 47.619 0.00 0.00 38.49 3.99
6034 8800 1.004927 GCATAAAGGCACTAGCGAACG 60.005 52.381 0.00 0.00 38.49 3.95
6035 8801 2.006888 TGCATAAAGGCACTAGCGAAC 58.993 47.619 0.00 0.00 38.49 3.95
6036 8802 2.394930 TGCATAAAGGCACTAGCGAA 57.605 45.000 0.00 0.00 38.49 4.70
6144 8917 4.156922 TCTTCAATCTGAGTCTTCGTCCTC 59.843 45.833 0.00 0.00 0.00 3.71
6155 8953 2.678836 CCTGCAGCTTCTTCAATCTGAG 59.321 50.000 8.66 0.00 28.56 3.35
6181 9015 7.817962 TCTTTTCAACGGGAAACAAAATTGTAA 59.182 29.630 0.00 0.00 44.89 2.41
6186 9020 7.674471 TTTTCTTTTCAACGGGAAACAAAAT 57.326 28.000 4.28 0.00 44.89 1.82
6308 10517 3.467803 ACGATGGCAGCCTATAGAAAAC 58.532 45.455 14.15 0.00 0.00 2.43
6538 11836 2.185663 TTATACACTCCCCTCCCCAC 57.814 55.000 0.00 0.00 0.00 4.61
6599 11900 7.572523 TGATCTTGAATGAGAAACAAACAGT 57.427 32.000 0.00 0.00 0.00 3.55
6600 11901 8.133627 AGTTGATCTTGAATGAGAAACAAACAG 58.866 33.333 0.00 0.00 32.34 3.16
6601 11902 7.999679 AGTTGATCTTGAATGAGAAACAAACA 58.000 30.769 0.00 0.00 32.34 2.83
6602 11903 8.862550 AAGTTGATCTTGAATGAGAAACAAAC 57.137 30.769 0.00 0.00 34.77 2.93
6737 12376 8.403236 ACGCTAGAAAGTAAACACAATCTTTTT 58.597 29.630 0.00 0.00 31.56 1.94
6738 12377 7.927048 ACGCTAGAAAGTAAACACAATCTTTT 58.073 30.769 0.00 0.00 31.56 2.27
6739 12378 7.441458 AGACGCTAGAAAGTAAACACAATCTTT 59.559 33.333 0.00 0.00 33.64 2.52
6846 12487 2.926838 CCCACCAACAGAAAACAAAACG 59.073 45.455 0.00 0.00 0.00 3.60
6853 12495 2.765689 ATCCACCCACCAACAGAAAA 57.234 45.000 0.00 0.00 0.00 2.29
6861 12504 0.114168 CCCTCAAAATCCACCCACCA 59.886 55.000 0.00 0.00 0.00 4.17
7064 13334 1.754234 GGTGGCCATGCGGAGAAAT 60.754 57.895 9.72 0.00 0.00 2.17
7071 13341 4.854924 TGGATCGGTGGCCATGCG 62.855 66.667 9.72 0.00 0.00 4.73
7072 13342 3.211963 GTGGATCGGTGGCCATGC 61.212 66.667 9.72 0.00 36.41 4.06
7073 13343 2.516930 GGTGGATCGGTGGCCATG 60.517 66.667 9.72 4.89 36.41 3.66
7074 13344 4.175337 CGGTGGATCGGTGGCCAT 62.175 66.667 9.72 0.00 36.41 4.40
7083 13353 3.846430 GTCCCCGTCCGGTGGATC 61.846 72.222 15.77 8.61 37.12 3.36
7110 13380 1.670406 GGACTCACCTGCAGCTGTG 60.670 63.158 16.64 12.46 35.41 3.66
7111 13381 2.746359 GGACTCACCTGCAGCTGT 59.254 61.111 16.64 0.00 35.41 4.40
7119 13389 6.799799 AGGAAACCTGAAGAGGACTCACCT 62.800 50.000 1.75 0.00 42.93 4.00
7120 13390 2.289756 GGAAACCTGAAGAGGACTCACC 60.290 54.545 1.75 0.00 42.93 4.02
7121 13391 2.635427 AGGAAACCTGAAGAGGACTCAC 59.365 50.000 1.75 0.00 42.93 3.51
7122 13392 2.977808 AGGAAACCTGAAGAGGACTCA 58.022 47.619 1.75 0.00 42.93 3.41
7134 13404 6.098552 GCCTAGTAATTAGAGTCAGGAAACCT 59.901 42.308 0.00 0.00 0.00 3.50
7135 13405 6.282167 GCCTAGTAATTAGAGTCAGGAAACC 58.718 44.000 0.00 0.00 0.00 3.27
7136 13406 6.098552 AGGCCTAGTAATTAGAGTCAGGAAAC 59.901 42.308 1.29 0.00 0.00 2.78
7137 13407 6.203072 AGGCCTAGTAATTAGAGTCAGGAAA 58.797 40.000 1.29 0.00 0.00 3.13
7138 13408 5.778542 AGGCCTAGTAATTAGAGTCAGGAA 58.221 41.667 1.29 0.00 0.00 3.36
7139 13409 5.405063 AGGCCTAGTAATTAGAGTCAGGA 57.595 43.478 1.29 0.00 0.00 3.86
7140 13410 6.308566 AGTAGGCCTAGTAATTAGAGTCAGG 58.691 44.000 19.05 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.