Multiple sequence alignment - TraesCS2D01G027800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G027800 chr2D 100.000 2843 0 0 1 2843 11497544 11494702 0.000000e+00 5251.0
1 TraesCS2D01G027800 chr2D 92.857 616 37 3 1790 2398 13422098 13422713 0.000000e+00 887.0
2 TraesCS2D01G027800 chr2D 92.045 616 42 3 1790 2398 11509268 11508653 0.000000e+00 859.0
3 TraesCS2D01G027800 chr2D 89.967 608 54 3 1790 2390 617053033 617053640 0.000000e+00 778.0
4 TraesCS2D01G027800 chr2D 92.373 472 36 0 1331 1802 11477781 11477310 0.000000e+00 673.0
5 TraesCS2D01G027800 chr2D 93.735 431 27 0 1372 1802 11509647 11509217 0.000000e+00 647.0
6 TraesCS2D01G027800 chr2D 90.714 420 38 1 1384 1802 617052665 617053084 2.470000e-155 558.0
7 TraesCS2D01G027800 chr2D 84.574 551 56 20 726 1255 11510188 11509646 1.170000e-143 520.0
8 TraesCS2D01G027800 chr2D 95.238 273 13 0 993 1265 11478055 11477783 1.560000e-117 433.0
9 TraesCS2D01G027800 chr2D 93.534 232 12 1 981 1209 13421424 13421655 2.710000e-90 342.0
10 TraesCS2D01G027800 chr2D 80.556 504 49 31 730 1194 617051065 617051558 2.710000e-90 342.0
11 TraesCS2D01G027800 chr2D 87.059 85 7 2 730 810 11478305 11478221 3.020000e-15 93.5
12 TraesCS2D01G027800 chr2A 95.158 1074 31 6 1790 2843 12102660 12101588 0.000000e+00 1676.0
13 TraesCS2D01G027800 chr2A 90.278 1080 74 14 1790 2843 12072843 12071769 0.000000e+00 1384.0
14 TraesCS2D01G027800 chr2A 92.370 616 40 3 1790 2398 15395522 15396137 0.000000e+00 870.0
15 TraesCS2D01G027800 chr2A 92.208 616 41 3 1790 2398 12047952 12047337 0.000000e+00 865.0
16 TraesCS2D01G027800 chr2A 93.735 431 27 0 1372 1802 12103039 12102609 0.000000e+00 647.0
17 TraesCS2D01G027800 chr2A 93.488 430 28 0 1373 1802 12048330 12047901 8.590000e-180 640.0
18 TraesCS2D01G027800 chr2A 93.039 431 30 0 1372 1802 12073222 12072792 5.170000e-177 630.0
19 TraesCS2D01G027800 chr2A 82.783 697 75 25 593 1255 12103723 12103038 5.280000e-162 580.0
20 TraesCS2D01G027800 chr2A 89.631 434 40 1 1374 1802 15395140 15395573 5.350000e-152 547.0
21 TraesCS2D01G027800 chr2A 91.638 287 18 2 974 1255 12073506 12073221 2.660000e-105 392.0
22 TraesCS2D01G027800 chr2A 81.096 529 57 30 730 1246 12048839 12048342 1.600000e-102 383.0
23 TraesCS2D01G027800 chr2A 90.272 257 17 6 995 1246 15394873 15395126 2.110000e-86 329.0
24 TraesCS2D01G027800 chr2A 79.572 514 47 36 730 1194 747086781 747087285 5.910000e-82 315.0
25 TraesCS2D01G027800 chr2A 93.878 49 1 2 546 593 12103810 12103763 3.930000e-09 73.1
26 TraesCS2D01G027800 chr2B 93.209 1075 41 7 1790 2843 17882545 17881482 0.000000e+00 1552.0
27 TraesCS2D01G027800 chr2B 93.218 811 53 1 994 1802 17883304 17882494 0.000000e+00 1192.0
28 TraesCS2D01G027800 chr2B 93.344 616 34 3 1790 2398 17873383 17872768 0.000000e+00 904.0
29 TraesCS2D01G027800 chr2B 91.396 616 46 3 1790 2398 24090194 24090809 0.000000e+00 837.0
30 TraesCS2D01G027800 chr2B 92.162 421 33 0 1382 1802 17873752 17873332 1.890000e-166 595.0
31 TraesCS2D01G027800 chr2B 93.284 268 15 3 991 1255 17874038 17873771 2.660000e-105 392.0
32 TraesCS2D01G027800 chr2B 78.161 348 42 18 568 892 17883713 17883377 1.040000e-44 191.0
33 TraesCS2D01G027800 chr2B 79.310 174 18 11 730 894 752784883 752785047 3.870000e-19 106.0
34 TraesCS2D01G027800 chr2B 89.873 79 7 1 507 584 17874426 17874348 1.800000e-17 100.0
35 TraesCS2D01G027800 chr2B 83.721 86 3 4 518 593 17883803 17883719 1.410000e-08 71.3
36 TraesCS2D01G027800 chr3D 89.333 75 8 0 1254 1328 192596913 192596839 8.380000e-16 95.3
37 TraesCS2D01G027800 chr7B 90.323 62 6 0 1268 1329 185465318 185465257 6.530000e-12 82.4
38 TraesCS2D01G027800 chr5B 97.297 37 1 0 1328 1364 342215635 342215671 2.360000e-06 63.9
39 TraesCS2D01G027800 chr6B 100.000 32 0 0 1333 1364 678330057 678330026 3.060000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G027800 chr2D 11494702 11497544 2842 True 5251.000000 5251 100.000000 1 2843 1 chr2D.!!$R1 2842
1 TraesCS2D01G027800 chr2D 11508653 11510188 1535 True 675.333333 859 90.118000 726 2398 3 chr2D.!!$R3 1672
2 TraesCS2D01G027800 chr2D 13421424 13422713 1289 False 614.500000 887 93.195500 981 2398 2 chr2D.!!$F1 1417
3 TraesCS2D01G027800 chr2D 617051065 617053640 2575 False 559.333333 778 87.079000 730 2390 3 chr2D.!!$F2 1660
4 TraesCS2D01G027800 chr2D 11477310 11478305 995 True 399.833333 673 91.556667 730 1802 3 chr2D.!!$R2 1072
5 TraesCS2D01G027800 chr2A 12071769 12073506 1737 True 802.000000 1384 91.651667 974 2843 3 chr2A.!!$R2 1869
6 TraesCS2D01G027800 chr2A 12101588 12103810 2222 True 744.025000 1676 91.388500 546 2843 4 chr2A.!!$R3 2297
7 TraesCS2D01G027800 chr2A 12047337 12048839 1502 True 629.333333 865 88.930667 730 2398 3 chr2A.!!$R1 1668
8 TraesCS2D01G027800 chr2A 15394873 15396137 1264 False 582.000000 870 90.757667 995 2398 3 chr2A.!!$F2 1403
9 TraesCS2D01G027800 chr2A 747086781 747087285 504 False 315.000000 315 79.572000 730 1194 1 chr2A.!!$F1 464
10 TraesCS2D01G027800 chr2B 24090194 24090809 615 False 837.000000 837 91.396000 1790 2398 1 chr2B.!!$F1 608
11 TraesCS2D01G027800 chr2B 17881482 17883803 2321 True 751.575000 1552 87.077250 518 2843 4 chr2B.!!$R2 2325
12 TraesCS2D01G027800 chr2B 17872768 17874426 1658 True 497.750000 904 92.165750 507 2398 4 chr2B.!!$R1 1891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.032416 AGTATACGCCACTCCACCCT 60.032 55.0 0.00 0.0 0.00 4.34 F
449 450 0.034337 GCTTTACACACCCGGACTGA 59.966 55.0 0.73 0.0 0.00 3.41 F
476 477 0.037232 CCTCTCAAAGGTCACCGTCC 60.037 60.0 0.00 0.0 40.67 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 2716 0.398381 AGGCACACATGTTGGGGTTT 60.398 50.000 0.00 0.0 0.00 3.27 R
1494 2758 1.150536 AACCACAATGTCCTGGCGT 59.849 52.632 0.00 0.0 0.00 5.68 R
1985 3249 1.895798 TCTGAGTCTGGCAGAATCGTT 59.104 47.619 32.01 12.2 41.81 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.815308 GGACGCGTCCTCCATGAT 59.185 61.111 43.32 4.36 46.16 2.45
28 29 1.592669 GGACGCGTCCTCCATGATG 60.593 63.158 43.32 0.00 46.16 3.07
29 30 1.592669 GACGCGTCCTCCATGATGG 60.593 63.158 28.61 4.74 39.43 3.51
30 31 2.016393 GACGCGTCCTCCATGATGGA 62.016 60.000 28.61 14.42 45.98 3.41
38 39 2.452116 TCCATGATGGATCCGGTCC 58.548 57.895 10.75 14.17 42.67 4.46
54 55 2.699954 GGTCCACGATAGCCCATATTG 58.300 52.381 0.00 0.00 42.67 1.90
55 56 2.301870 GGTCCACGATAGCCCATATTGA 59.698 50.000 0.00 0.00 42.67 2.57
56 57 3.326747 GTCCACGATAGCCCATATTGAC 58.673 50.000 0.00 0.00 42.67 3.18
57 58 2.301870 TCCACGATAGCCCATATTGACC 59.698 50.000 0.00 0.00 42.67 4.02
58 59 2.337583 CACGATAGCCCATATTGACCG 58.662 52.381 0.00 0.00 42.67 4.79
59 60 1.337823 ACGATAGCCCATATTGACCGC 60.338 52.381 0.00 0.00 42.67 5.68
60 61 1.337728 CGATAGCCCATATTGACCGCA 60.338 52.381 0.00 0.00 0.00 5.69
61 62 2.677902 CGATAGCCCATATTGACCGCAT 60.678 50.000 0.00 0.00 0.00 4.73
62 63 3.430236 CGATAGCCCATATTGACCGCATA 60.430 47.826 0.00 0.00 0.00 3.14
63 64 2.949177 AGCCCATATTGACCGCATAA 57.051 45.000 0.00 0.00 0.00 1.90
64 65 3.222173 AGCCCATATTGACCGCATAAA 57.778 42.857 0.00 0.00 0.00 1.40
65 66 3.766545 AGCCCATATTGACCGCATAAAT 58.233 40.909 0.00 0.00 0.00 1.40
66 67 4.917385 AGCCCATATTGACCGCATAAATA 58.083 39.130 0.00 0.00 0.00 1.40
67 68 5.509498 AGCCCATATTGACCGCATAAATAT 58.491 37.500 0.00 0.00 0.00 1.28
68 69 5.590259 AGCCCATATTGACCGCATAAATATC 59.410 40.000 0.00 0.00 0.00 1.63
69 70 5.590259 GCCCATATTGACCGCATAAATATCT 59.410 40.000 0.00 0.00 0.00 1.98
70 71 6.238484 GCCCATATTGACCGCATAAATATCTC 60.238 42.308 0.00 0.00 0.00 2.75
71 72 6.260936 CCCATATTGACCGCATAAATATCTCC 59.739 42.308 0.00 0.00 0.00 3.71
72 73 6.823182 CCATATTGACCGCATAAATATCTCCA 59.177 38.462 0.00 0.00 0.00 3.86
73 74 7.500227 CCATATTGACCGCATAAATATCTCCAT 59.500 37.037 0.00 0.00 0.00 3.41
74 75 8.896744 CATATTGACCGCATAAATATCTCCATT 58.103 33.333 0.00 0.00 0.00 3.16
75 76 6.801539 TTGACCGCATAAATATCTCCATTC 57.198 37.500 0.00 0.00 0.00 2.67
76 77 6.114187 TGACCGCATAAATATCTCCATTCT 57.886 37.500 0.00 0.00 0.00 2.40
77 78 7.239763 TGACCGCATAAATATCTCCATTCTA 57.760 36.000 0.00 0.00 0.00 2.10
78 79 7.851228 TGACCGCATAAATATCTCCATTCTAT 58.149 34.615 0.00 0.00 0.00 1.98
79 80 7.981789 TGACCGCATAAATATCTCCATTCTATC 59.018 37.037 0.00 0.00 0.00 2.08
80 81 7.275920 ACCGCATAAATATCTCCATTCTATCC 58.724 38.462 0.00 0.00 0.00 2.59
81 82 7.092891 ACCGCATAAATATCTCCATTCTATCCA 60.093 37.037 0.00 0.00 0.00 3.41
82 83 7.225538 CCGCATAAATATCTCCATTCTATCCAC 59.774 40.741 0.00 0.00 0.00 4.02
83 84 7.765819 CGCATAAATATCTCCATTCTATCCACA 59.234 37.037 0.00 0.00 0.00 4.17
84 85 9.624373 GCATAAATATCTCCATTCTATCCACAT 57.376 33.333 0.00 0.00 0.00 3.21
88 89 5.758790 ATCTCCATTCTATCCACATCTGG 57.241 43.478 0.00 0.00 39.23 3.86
96 97 3.388497 TCCACATCTGGACAGAGCT 57.612 52.632 8.14 0.00 42.15 4.09
97 98 1.189752 TCCACATCTGGACAGAGCTC 58.810 55.000 5.27 5.27 42.15 4.09
98 99 1.193323 CCACATCTGGACAGAGCTCT 58.807 55.000 11.45 11.45 40.55 4.09
99 100 2.024941 TCCACATCTGGACAGAGCTCTA 60.025 50.000 17.75 0.00 42.15 2.43
100 101 2.361757 CCACATCTGGACAGAGCTCTAG 59.638 54.545 17.75 10.54 40.55 2.43
101 102 2.031120 ACATCTGGACAGAGCTCTAGC 58.969 52.381 17.75 11.14 41.33 3.42
102 103 1.340889 CATCTGGACAGAGCTCTAGCC 59.659 57.143 17.75 20.03 41.33 3.93
103 104 0.332972 TCTGGACAGAGCTCTAGCCA 59.667 55.000 26.36 26.36 43.38 4.75
104 105 0.459489 CTGGACAGAGCTCTAGCCAC 59.541 60.000 25.12 12.44 43.38 5.01
105 106 0.040351 TGGACAGAGCTCTAGCCACT 59.960 55.000 25.12 0.00 43.38 4.00
106 107 1.190643 GGACAGAGCTCTAGCCACTT 58.809 55.000 17.75 0.00 43.38 3.16
107 108 1.552792 GGACAGAGCTCTAGCCACTTT 59.447 52.381 17.75 0.00 43.38 2.66
108 109 2.418060 GGACAGAGCTCTAGCCACTTTC 60.418 54.545 17.75 3.75 43.38 2.62
109 110 1.552792 ACAGAGCTCTAGCCACTTTCC 59.447 52.381 17.75 0.00 43.38 3.13
110 111 1.552337 CAGAGCTCTAGCCACTTTCCA 59.448 52.381 17.75 0.00 43.38 3.53
111 112 1.552792 AGAGCTCTAGCCACTTTCCAC 59.447 52.381 16.50 0.00 43.38 4.02
112 113 1.552792 GAGCTCTAGCCACTTTCCACT 59.447 52.381 6.43 0.00 43.38 4.00
113 114 1.552792 AGCTCTAGCCACTTTCCACTC 59.447 52.381 0.00 0.00 43.38 3.51
114 115 1.406205 GCTCTAGCCACTTTCCACTCC 60.406 57.143 0.00 0.00 34.31 3.85
115 116 1.902508 CTCTAGCCACTTTCCACTCCA 59.097 52.381 0.00 0.00 0.00 3.86
116 117 1.623811 TCTAGCCACTTTCCACTCCAC 59.376 52.381 0.00 0.00 0.00 4.02
117 118 1.625818 CTAGCCACTTTCCACTCCACT 59.374 52.381 0.00 0.00 0.00 4.00
118 119 0.398318 AGCCACTTTCCACTCCACTC 59.602 55.000 0.00 0.00 0.00 3.51
119 120 0.951040 GCCACTTTCCACTCCACTCG 60.951 60.000 0.00 0.00 0.00 4.18
120 121 0.679505 CCACTTTCCACTCCACTCGA 59.320 55.000 0.00 0.00 0.00 4.04
121 122 1.605712 CCACTTTCCACTCCACTCGAC 60.606 57.143 0.00 0.00 0.00 4.20
122 123 1.341531 CACTTTCCACTCCACTCGACT 59.658 52.381 0.00 0.00 0.00 4.18
123 124 2.040178 ACTTTCCACTCCACTCGACTT 58.960 47.619 0.00 0.00 0.00 3.01
124 125 2.434702 ACTTTCCACTCCACTCGACTTT 59.565 45.455 0.00 0.00 0.00 2.66
125 126 3.640029 ACTTTCCACTCCACTCGACTTTA 59.360 43.478 0.00 0.00 0.00 1.85
126 127 4.100498 ACTTTCCACTCCACTCGACTTTAA 59.900 41.667 0.00 0.00 0.00 1.52
127 128 3.936372 TCCACTCCACTCGACTTTAAG 57.064 47.619 0.00 0.00 0.00 1.85
128 129 3.228453 TCCACTCCACTCGACTTTAAGT 58.772 45.455 0.00 0.00 0.00 2.24
129 130 4.401022 TCCACTCCACTCGACTTTAAGTA 58.599 43.478 0.00 0.00 0.00 2.24
130 131 5.014858 TCCACTCCACTCGACTTTAAGTAT 58.985 41.667 0.00 0.00 0.00 2.12
131 132 6.182627 TCCACTCCACTCGACTTTAAGTATA 58.817 40.000 0.00 0.00 0.00 1.47
132 133 6.094603 TCCACTCCACTCGACTTTAAGTATAC 59.905 42.308 0.00 0.00 0.00 1.47
133 134 5.964168 CACTCCACTCGACTTTAAGTATACG 59.036 44.000 0.00 0.00 0.00 3.06
134 135 4.913376 TCCACTCGACTTTAAGTATACGC 58.087 43.478 0.00 0.00 0.00 4.42
135 136 4.040376 CCACTCGACTTTAAGTATACGCC 58.960 47.826 0.00 0.00 0.00 5.68
136 137 4.439153 CCACTCGACTTTAAGTATACGCCA 60.439 45.833 0.00 0.00 0.00 5.69
137 138 4.498323 CACTCGACTTTAAGTATACGCCAC 59.502 45.833 0.00 0.00 0.00 5.01
138 139 4.397417 ACTCGACTTTAAGTATACGCCACT 59.603 41.667 0.00 0.00 0.00 4.00
139 140 4.913376 TCGACTTTAAGTATACGCCACTC 58.087 43.478 0.00 0.00 0.00 3.51
140 141 4.040376 CGACTTTAAGTATACGCCACTCC 58.960 47.826 0.00 0.00 0.00 3.85
141 142 4.439153 CGACTTTAAGTATACGCCACTCCA 60.439 45.833 0.00 0.00 0.00 3.86
142 143 4.752146 ACTTTAAGTATACGCCACTCCAC 58.248 43.478 0.00 0.00 0.00 4.02
143 144 3.806625 TTAAGTATACGCCACTCCACC 57.193 47.619 0.00 0.00 0.00 4.61
144 145 0.828677 AAGTATACGCCACTCCACCC 59.171 55.000 0.00 0.00 0.00 4.61
145 146 0.032416 AGTATACGCCACTCCACCCT 60.032 55.000 0.00 0.00 0.00 4.34
146 147 0.388294 GTATACGCCACTCCACCCTC 59.612 60.000 0.00 0.00 0.00 4.30
147 148 0.757935 TATACGCCACTCCACCCTCC 60.758 60.000 0.00 0.00 0.00 4.30
148 149 2.531483 ATACGCCACTCCACCCTCCT 62.531 60.000 0.00 0.00 0.00 3.69
149 150 3.775654 CGCCACTCCACCCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
150 151 2.284995 GCCACTCCACCCTCCTCT 60.285 66.667 0.00 0.00 0.00 3.69
151 152 2.664081 GCCACTCCACCCTCCTCTG 61.664 68.421 0.00 0.00 0.00 3.35
152 153 1.992277 CCACTCCACCCTCCTCTGG 60.992 68.421 0.00 0.00 0.00 3.86
153 154 2.284995 ACTCCACCCTCCTCTGGC 60.285 66.667 0.00 0.00 0.00 4.85
154 155 2.040278 CTCCACCCTCCTCTGGCT 59.960 66.667 0.00 0.00 0.00 4.75
155 156 2.039624 TCCACCCTCCTCTGGCTC 59.960 66.667 0.00 0.00 0.00 4.70
156 157 3.086600 CCACCCTCCTCTGGCTCC 61.087 72.222 0.00 0.00 0.00 4.70
157 158 2.040278 CACCCTCCTCTGGCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
158 159 2.063378 CACCCTCCTCTGGCTCCTC 61.063 68.421 0.00 0.00 0.00 3.71
159 160 2.252898 ACCCTCCTCTGGCTCCTCT 61.253 63.158 0.00 0.00 0.00 3.69
160 161 1.457455 CCCTCCTCTGGCTCCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
161 162 1.457455 CCTCCTCTGGCTCCTCTCC 60.457 68.421 0.00 0.00 0.00 3.71
162 163 1.827789 CTCCTCTGGCTCCTCTCCG 60.828 68.421 0.00 0.00 0.00 4.63
163 164 2.837291 CCTCTGGCTCCTCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
164 165 3.535962 CTCTGGCTCCTCTCCGGC 61.536 72.222 0.00 0.00 0.00 6.13
169 170 4.851214 GCTCCTCTCCGGCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
170 171 2.520741 CTCCTCTCCGGCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
171 172 4.144727 TCCTCTCCGGCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
187 188 3.000002 TCCGATAAGGAGGGCAACA 58.000 52.632 0.00 0.00 45.98 3.33
188 189 0.830648 TCCGATAAGGAGGGCAACAG 59.169 55.000 0.00 0.00 45.98 3.16
189 190 0.830648 CCGATAAGGAGGGCAACAGA 59.169 55.000 0.00 0.00 45.00 3.41
190 191 1.417890 CCGATAAGGAGGGCAACAGAT 59.582 52.381 0.00 0.00 45.00 2.90
191 192 2.548920 CCGATAAGGAGGGCAACAGATC 60.549 54.545 0.00 0.00 45.00 2.75
192 193 2.366916 CGATAAGGAGGGCAACAGATCT 59.633 50.000 0.00 0.00 39.74 2.75
193 194 3.737850 GATAAGGAGGGCAACAGATCTG 58.262 50.000 21.37 21.37 39.74 2.90
194 195 1.661463 AAGGAGGGCAACAGATCTGA 58.339 50.000 29.27 0.00 39.74 3.27
195 196 0.908198 AGGAGGGCAACAGATCTGAC 59.092 55.000 29.27 16.55 39.74 3.51
196 197 0.615331 GGAGGGCAACAGATCTGACA 59.385 55.000 29.27 0.00 39.74 3.58
197 198 1.677217 GGAGGGCAACAGATCTGACAC 60.677 57.143 29.27 17.75 39.74 3.67
198 199 1.277557 GAGGGCAACAGATCTGACACT 59.722 52.381 29.27 21.86 39.74 3.55
199 200 1.002888 AGGGCAACAGATCTGACACTG 59.997 52.381 29.27 18.81 39.65 3.66
200 201 1.446907 GGCAACAGATCTGACACTGG 58.553 55.000 29.27 5.39 38.30 4.00
201 202 0.801251 GCAACAGATCTGACACTGGC 59.199 55.000 29.27 12.00 38.30 4.85
202 203 1.073964 CAACAGATCTGACACTGGCG 58.926 55.000 29.27 0.00 38.30 5.69
203 204 0.671781 AACAGATCTGACACTGGCGC 60.672 55.000 29.27 0.00 38.30 6.53
204 205 2.163390 CAGATCTGACACTGGCGCG 61.163 63.158 18.34 0.00 0.00 6.86
205 206 2.125912 GATCTGACACTGGCGCGT 60.126 61.111 8.43 0.00 0.00 6.01
206 207 2.125912 ATCTGACACTGGCGCGTC 60.126 61.111 2.29 2.29 0.00 5.19
207 208 2.549611 GATCTGACACTGGCGCGTCT 62.550 60.000 13.81 0.00 33.18 4.18
208 209 2.825726 ATCTGACACTGGCGCGTCTG 62.826 60.000 16.45 16.45 33.18 3.51
209 210 3.558099 CTGACACTGGCGCGTCTGA 62.558 63.158 24.73 0.00 34.14 3.27
210 211 2.355837 GACACTGGCGCGTCTGAA 60.356 61.111 24.73 0.00 0.00 3.02
211 212 1.738099 GACACTGGCGCGTCTGAAT 60.738 57.895 24.73 11.13 0.00 2.57
212 213 0.457853 GACACTGGCGCGTCTGAATA 60.458 55.000 24.73 0.00 0.00 1.75
213 214 0.736325 ACACTGGCGCGTCTGAATAC 60.736 55.000 24.73 0.00 0.00 1.89
214 215 1.516386 ACTGGCGCGTCTGAATACG 60.516 57.895 24.73 0.28 45.58 3.06
215 216 1.516386 CTGGCGCGTCTGAATACGT 60.516 57.895 13.81 0.00 44.64 3.57
216 217 1.472276 CTGGCGCGTCTGAATACGTC 61.472 60.000 13.81 0.00 44.64 4.34
217 218 2.565394 GGCGCGTCTGAATACGTCG 61.565 63.158 8.43 0.00 44.64 5.12
218 219 1.581912 GCGCGTCTGAATACGTCGA 60.582 57.895 8.43 0.00 44.64 4.20
219 220 1.785720 GCGCGTCTGAATACGTCGAC 61.786 60.000 8.43 5.18 44.64 4.20
220 221 0.247576 CGCGTCTGAATACGTCGACT 60.248 55.000 14.70 3.37 44.64 4.18
221 222 1.181001 GCGTCTGAATACGTCGACTG 58.819 55.000 14.70 9.79 44.64 3.51
222 223 1.811428 CGTCTGAATACGTCGACTGG 58.189 55.000 14.70 0.96 38.07 4.00
223 224 1.395954 CGTCTGAATACGTCGACTGGA 59.604 52.381 14.70 4.29 38.07 3.86
224 225 2.159612 CGTCTGAATACGTCGACTGGAA 60.160 50.000 14.70 1.13 38.07 3.53
225 226 3.169733 GTCTGAATACGTCGACTGGAAC 58.830 50.000 14.70 3.21 31.31 3.62
226 227 2.815503 TCTGAATACGTCGACTGGAACA 59.184 45.455 14.70 7.59 0.00 3.18
227 228 3.442625 TCTGAATACGTCGACTGGAACAT 59.557 43.478 14.70 0.00 38.20 2.71
228 229 3.507786 TGAATACGTCGACTGGAACATG 58.492 45.455 14.70 0.00 38.20 3.21
229 230 2.579207 ATACGTCGACTGGAACATGG 57.421 50.000 14.70 0.00 38.20 3.66
230 231 1.250328 TACGTCGACTGGAACATGGT 58.750 50.000 14.70 3.12 38.20 3.55
231 232 0.038526 ACGTCGACTGGAACATGGTC 60.039 55.000 14.70 0.73 38.20 4.02
232 233 0.736325 CGTCGACTGGAACATGGTCC 60.736 60.000 23.74 23.74 38.20 4.46
233 234 0.391263 GTCGACTGGAACATGGTCCC 60.391 60.000 27.12 10.83 38.20 4.46
234 235 0.834261 TCGACTGGAACATGGTCCCA 60.834 55.000 27.12 13.82 38.20 4.37
235 236 0.036164 CGACTGGAACATGGTCCCAA 59.964 55.000 27.12 8.57 38.20 4.12
236 237 1.826385 GACTGGAACATGGTCCCAAG 58.174 55.000 27.12 20.13 38.20 3.61
237 238 0.251341 ACTGGAACATGGTCCCAAGC 60.251 55.000 27.12 1.88 38.20 4.01
238 239 0.251297 CTGGAACATGGTCCCAAGCA 60.251 55.000 27.12 6.97 38.20 3.91
239 240 0.187117 TGGAACATGGTCCCAAGCAA 59.813 50.000 27.12 4.01 36.80 3.91
240 241 0.890683 GGAACATGGTCCCAAGCAAG 59.109 55.000 19.95 0.00 36.29 4.01
241 242 0.890683 GAACATGGTCCCAAGCAAGG 59.109 55.000 0.00 0.00 36.29 3.61
242 243 1.187567 AACATGGTCCCAAGCAAGGC 61.188 55.000 0.00 0.00 36.29 4.35
243 244 2.037847 ATGGTCCCAAGCAAGGCC 59.962 61.111 0.00 0.00 36.29 5.19
244 245 3.944250 ATGGTCCCAAGCAAGGCCG 62.944 63.158 0.00 0.00 36.29 6.13
245 246 4.344865 GGTCCCAAGCAAGGCCGA 62.345 66.667 0.00 0.00 0.00 5.54
246 247 2.747855 GTCCCAAGCAAGGCCGAG 60.748 66.667 0.00 0.00 0.00 4.63
247 248 4.033776 TCCCAAGCAAGGCCGAGG 62.034 66.667 0.00 0.00 0.00 4.63
249 250 4.351054 CCAAGCAAGGCCGAGGGT 62.351 66.667 0.00 0.00 0.00 4.34
250 251 3.058160 CAAGCAAGGCCGAGGGTG 61.058 66.667 0.00 0.00 0.00 4.61
251 252 3.249189 AAGCAAGGCCGAGGGTGA 61.249 61.111 0.00 0.00 0.00 4.02
252 253 2.606587 AAGCAAGGCCGAGGGTGAT 61.607 57.895 0.00 0.00 0.00 3.06
253 254 1.271840 AAGCAAGGCCGAGGGTGATA 61.272 55.000 0.00 0.00 0.00 2.15
254 255 1.056700 AGCAAGGCCGAGGGTGATAT 61.057 55.000 0.00 0.00 0.00 1.63
255 256 0.886490 GCAAGGCCGAGGGTGATATG 60.886 60.000 0.00 0.00 0.00 1.78
256 257 0.250467 CAAGGCCGAGGGTGATATGG 60.250 60.000 0.00 0.00 0.00 2.74
257 258 2.032681 GGCCGAGGGTGATATGGC 59.967 66.667 0.00 0.00 44.98 4.40
258 259 2.032681 GCCGAGGGTGATATGGCC 59.967 66.667 0.00 0.00 39.83 5.36
259 260 2.343758 CCGAGGGTGATATGGCCG 59.656 66.667 0.00 0.00 0.00 6.13
260 261 2.507854 CCGAGGGTGATATGGCCGT 61.508 63.158 1.35 1.35 0.00 5.68
261 262 1.006102 CGAGGGTGATATGGCCGTC 60.006 63.158 0.00 0.00 36.59 4.79
262 263 1.371558 GAGGGTGATATGGCCGTCC 59.628 63.158 0.00 0.00 34.59 4.79
263 264 2.030562 GGGTGATATGGCCGTCCG 59.969 66.667 0.00 0.00 34.14 4.79
264 265 2.665185 GGTGATATGGCCGTCCGC 60.665 66.667 0.00 1.01 34.14 5.54
285 286 2.047179 GCTCTCCGCCGTTTCCTT 60.047 61.111 0.00 0.00 0.00 3.36
286 287 2.391389 GCTCTCCGCCGTTTCCTTG 61.391 63.158 0.00 0.00 0.00 3.61
287 288 1.741770 CTCTCCGCCGTTTCCTTGG 60.742 63.158 0.00 0.00 0.00 3.61
288 289 2.167398 CTCTCCGCCGTTTCCTTGGA 62.167 60.000 0.00 0.00 0.00 3.53
289 290 1.741770 CTCCGCCGTTTCCTTGGAG 60.742 63.158 0.00 0.00 40.19 3.86
290 291 2.746277 CCGCCGTTTCCTTGGAGG 60.746 66.667 0.00 0.00 38.91 4.30
291 292 2.345991 CGCCGTTTCCTTGGAGGA 59.654 61.111 0.00 0.00 44.10 3.71
309 310 0.383231 GAATCCAATTCCAGCTGGCG 59.617 55.000 28.91 15.22 33.17 5.69
310 311 1.039233 AATCCAATTCCAGCTGGCGG 61.039 55.000 28.91 22.97 32.33 6.13
311 312 1.925285 ATCCAATTCCAGCTGGCGGA 61.925 55.000 28.91 26.91 32.33 5.54
312 313 2.409870 CCAATTCCAGCTGGCGGAC 61.410 63.158 28.91 0.00 34.44 4.79
313 314 2.044946 AATTCCAGCTGGCGGACC 60.045 61.111 28.91 0.00 34.44 4.46
314 315 3.976701 AATTCCAGCTGGCGGACCG 62.977 63.158 28.91 10.29 39.70 4.79
327 328 4.570663 GACCGAGGCGATCCCGTG 62.571 72.222 0.00 0.00 39.21 4.94
339 340 2.880770 TCCCGTGGGAATTCATTGC 58.119 52.632 4.80 0.00 42.05 3.56
340 341 0.038890 TCCCGTGGGAATTCATTGCA 59.961 50.000 4.80 0.00 42.05 4.08
341 342 1.113788 CCCGTGGGAATTCATTGCAT 58.886 50.000 7.93 0.00 37.50 3.96
342 343 1.067516 CCCGTGGGAATTCATTGCATC 59.932 52.381 7.93 0.00 37.50 3.91
343 344 1.067516 CCGTGGGAATTCATTGCATCC 59.932 52.381 7.93 0.00 0.00 3.51
344 345 1.268692 CGTGGGAATTCATTGCATCCG 60.269 52.381 7.93 0.00 32.56 4.18
345 346 1.750778 GTGGGAATTCATTGCATCCGT 59.249 47.619 7.93 0.00 32.56 4.69
346 347 1.750206 TGGGAATTCATTGCATCCGTG 59.250 47.619 7.93 0.00 32.56 4.94
365 366 2.282391 AAGTGGCGCTTGGATGCA 60.282 55.556 13.37 0.00 35.80 3.96
366 367 2.629656 AAGTGGCGCTTGGATGCAC 61.630 57.895 13.37 4.81 35.80 4.57
367 368 4.120331 GTGGCGCTTGGATGCACC 62.120 66.667 7.64 0.00 35.85 5.01
368 369 4.349503 TGGCGCTTGGATGCACCT 62.350 61.111 7.64 0.00 36.24 4.00
369 370 3.818787 GGCGCTTGGATGCACCTG 61.819 66.667 7.64 0.00 39.86 4.00
370 371 4.487412 GCGCTTGGATGCACCTGC 62.487 66.667 0.00 1.48 39.86 4.85
372 373 3.058160 GCTTGGATGCACCTGCGT 61.058 61.111 0.00 0.00 45.83 5.24
377 378 2.183300 GATGCACCTGCGTCGGTA 59.817 61.111 3.78 0.00 45.68 4.02
378 379 1.878522 GATGCACCTGCGTCGGTAG 60.879 63.158 3.78 0.00 45.68 3.18
379 380 4.735132 TGCACCTGCGTCGGTAGC 62.735 66.667 0.00 5.45 45.83 3.58
380 381 4.436998 GCACCTGCGTCGGTAGCT 62.437 66.667 0.00 0.00 34.94 3.32
381 382 2.202623 CACCTGCGTCGGTAGCTC 60.203 66.667 0.00 0.00 34.94 4.09
382 383 3.812019 ACCTGCGTCGGTAGCTCG 61.812 66.667 0.00 0.00 34.94 5.03
383 384 3.506096 CCTGCGTCGGTAGCTCGA 61.506 66.667 9.78 0.00 36.76 4.04
414 415 4.280019 GGTGAACAGCCCCGGGTT 62.280 66.667 21.85 6.79 0.00 4.11
415 416 2.983592 GTGAACAGCCCCGGGTTG 60.984 66.667 21.85 18.35 39.83 3.77
416 417 3.172106 TGAACAGCCCCGGGTTGA 61.172 61.111 25.99 1.52 37.36 3.18
417 418 2.671963 GAACAGCCCCGGGTTGAC 60.672 66.667 25.99 15.05 37.36 3.18
418 419 4.636435 AACAGCCCCGGGTTGACG 62.636 66.667 25.99 9.13 37.36 4.35
429 430 2.457080 GGTTGACGGCAAGCTCTAC 58.543 57.895 25.54 2.49 46.26 2.59
430 431 1.352156 GGTTGACGGCAAGCTCTACG 61.352 60.000 25.54 0.00 46.26 3.51
431 432 1.736645 TTGACGGCAAGCTCTACGC 60.737 57.895 0.00 0.00 39.57 4.42
442 443 1.356938 GCTCTACGCTTTACACACCC 58.643 55.000 0.00 0.00 35.14 4.61
443 444 1.625616 CTCTACGCTTTACACACCCG 58.374 55.000 0.00 0.00 0.00 5.28
444 445 0.244450 TCTACGCTTTACACACCCGG 59.756 55.000 0.00 0.00 0.00 5.73
445 446 0.244450 CTACGCTTTACACACCCGGA 59.756 55.000 0.73 0.00 0.00 5.14
446 447 0.038343 TACGCTTTACACACCCGGAC 60.038 55.000 0.73 0.00 0.00 4.79
447 448 1.005394 CGCTTTACACACCCGGACT 60.005 57.895 0.73 0.00 0.00 3.85
448 449 1.289109 CGCTTTACACACCCGGACTG 61.289 60.000 0.73 0.00 0.00 3.51
449 450 0.034337 GCTTTACACACCCGGACTGA 59.966 55.000 0.73 0.00 0.00 3.41
450 451 1.792006 CTTTACACACCCGGACTGAC 58.208 55.000 0.73 0.00 0.00 3.51
451 452 0.393820 TTTACACACCCGGACTGACC 59.606 55.000 0.73 0.00 0.00 4.02
452 453 1.474332 TTACACACCCGGACTGACCC 61.474 60.000 0.73 0.00 34.64 4.46
459 460 2.989824 CGGACTGACCCGTCACCT 60.990 66.667 0.00 0.00 44.23 4.00
460 461 2.971452 GGACTGACCCGTCACCTC 59.029 66.667 0.00 0.00 35.63 3.85
461 462 1.606889 GGACTGACCCGTCACCTCT 60.607 63.158 0.00 0.00 35.63 3.69
462 463 1.596895 GGACTGACCCGTCACCTCTC 61.597 65.000 0.00 0.00 35.63 3.20
463 464 0.894184 GACTGACCCGTCACCTCTCA 60.894 60.000 0.00 0.00 35.46 3.27
464 465 0.469331 ACTGACCCGTCACCTCTCAA 60.469 55.000 0.00 0.00 35.46 3.02
465 466 0.679505 CTGACCCGTCACCTCTCAAA 59.320 55.000 0.00 0.00 35.46 2.69
466 467 0.679505 TGACCCGTCACCTCTCAAAG 59.320 55.000 0.00 0.00 34.14 2.77
475 476 3.516578 CCTCTCAAAGGTCACCGTC 57.483 57.895 0.00 0.00 40.67 4.79
476 477 0.037232 CCTCTCAAAGGTCACCGTCC 60.037 60.000 0.00 0.00 40.67 4.79
477 478 0.388649 CTCTCAAAGGTCACCGTCCG 60.389 60.000 0.00 0.00 0.00 4.79
478 479 2.027625 CTCAAAGGTCACCGTCCGC 61.028 63.158 0.00 0.00 0.00 5.54
479 480 3.411351 CAAAGGTCACCGTCCGCG 61.411 66.667 0.00 0.00 37.95 6.46
503 504 2.813908 CCCACGCAGCTTACGGTC 60.814 66.667 10.42 0.00 34.00 4.79
504 505 2.261671 CCACGCAGCTTACGGTCT 59.738 61.111 10.42 0.00 34.00 3.85
505 506 1.509463 CCACGCAGCTTACGGTCTA 59.491 57.895 10.42 0.00 34.00 2.59
511 512 2.415625 CGCAGCTTACGGTCTAGAAAGT 60.416 50.000 0.00 0.00 0.00 2.66
513 514 3.512680 CAGCTTACGGTCTAGAAAGTGG 58.487 50.000 10.59 5.79 0.00 4.00
526 527 7.439655 GGTCTAGAAAGTGGTAGAGCAAATATG 59.560 40.741 0.00 0.00 41.44 1.78
577 587 0.919710 GGCCACATCTTCCCCTTACT 59.080 55.000 0.00 0.00 0.00 2.24
578 588 2.124411 GGCCACATCTTCCCCTTACTA 58.876 52.381 0.00 0.00 0.00 1.82
579 589 2.158798 GGCCACATCTTCCCCTTACTAC 60.159 54.545 0.00 0.00 0.00 2.73
580 590 2.772515 GCCACATCTTCCCCTTACTACT 59.227 50.000 0.00 0.00 0.00 2.57
610 692 1.269831 CCTGGTAATAGCAGAGCGGTC 60.270 57.143 19.81 6.48 45.98 4.79
612 694 0.318784 GGTAATAGCAGAGCGGTCCG 60.319 60.000 11.73 6.99 0.00 4.79
648 730 1.174078 TGCAAGTGTGTGGGCAGATG 61.174 55.000 0.00 0.00 0.00 2.90
649 731 1.870055 GCAAGTGTGTGGGCAGATGG 61.870 60.000 0.00 0.00 0.00 3.51
663 745 0.452184 AGATGGAGCACACGAGTACG 59.548 55.000 0.00 0.00 45.75 3.67
678 760 2.589157 TACGTGCAACTGGGGAGGG 61.589 63.158 0.00 0.00 31.75 4.30
700 782 1.073199 AACGAACTCCCAAGGCCAG 59.927 57.895 5.01 0.00 0.00 4.85
713 795 3.670377 GCCAGGCGACCCAACAAC 61.670 66.667 0.00 0.00 0.00 3.32
714 796 2.203280 CCAGGCGACCCAACAACA 60.203 61.111 0.00 0.00 0.00 3.33
715 797 1.826054 CCAGGCGACCCAACAACAA 60.826 57.895 0.00 0.00 0.00 2.83
720 802 1.460273 GCGACCCAACAACAACCCAT 61.460 55.000 0.00 0.00 0.00 4.00
721 803 0.313672 CGACCCAACAACAACCCATG 59.686 55.000 0.00 0.00 0.00 3.66
722 804 1.698506 GACCCAACAACAACCCATGA 58.301 50.000 0.00 0.00 0.00 3.07
724 806 0.318120 CCCAACAACAACCCATGAGC 59.682 55.000 0.00 0.00 0.00 4.26
739 842 1.800315 GAGCACGTACGTGTCGCAT 60.800 57.895 39.56 24.61 46.90 4.73
741 844 2.084101 GCACGTACGTGTCGCATGA 61.084 57.895 39.56 0.00 46.90 3.07
760 868 1.692749 GCCACCCATCTCCTACCCA 60.693 63.158 0.00 0.00 0.00 4.51
840 954 0.251165 GCCAGCTTTCCCTACCAACA 60.251 55.000 0.00 0.00 0.00 3.33
880 999 3.396951 CCCCCACGTTCATATCACC 57.603 57.895 0.00 0.00 0.00 4.02
886 1005 1.658596 CACGTTCATATCACCACACCG 59.341 52.381 0.00 0.00 0.00 4.94
929 1064 1.474855 GCCATTCTTCTCTGCCTCCTC 60.475 57.143 0.00 0.00 0.00 3.71
930 1065 2.117865 CCATTCTTCTCTGCCTCCTCT 58.882 52.381 0.00 0.00 0.00 3.69
966 1105 1.080434 GACGTCACACAGAGCCTCC 60.080 63.158 11.55 0.00 0.00 4.30
967 1106 1.806461 GACGTCACACAGAGCCTCCA 61.806 60.000 11.55 0.00 0.00 3.86
969 1108 0.459237 CGTCACACAGAGCCTCCATC 60.459 60.000 0.00 0.00 0.00 3.51
972 1133 1.193323 CACACAGAGCCTCCATCTCT 58.807 55.000 0.00 0.00 41.28 3.10
977 1138 3.160047 AGCCTCCATCTCTGCCGG 61.160 66.667 0.00 0.00 0.00 6.13
1005 1220 3.570125 CGTAGAGGTAGAGATCAATGGCA 59.430 47.826 0.00 0.00 0.00 4.92
1008 1223 2.103771 GAGGTAGAGATCAATGGCAGCA 59.896 50.000 0.00 0.00 0.00 4.41
1020 1235 2.740714 GGCAGCAACGATGACGGTC 61.741 63.158 0.00 0.00 44.46 4.79
1117 1332 1.310933 CGTGTACCAGGCCGACTACT 61.311 60.000 0.00 0.00 0.00 2.57
1259 2509 1.357137 TGGACATGCAACCTACTCCA 58.643 50.000 0.00 0.00 0.00 3.86
1269 2519 4.263462 TGCAACCTACTCCATCTGTTTCAT 60.263 41.667 0.00 0.00 0.00 2.57
1328 2578 8.845227 TGCAAAAACTTCTTATATTGTGAGACA 58.155 29.630 0.00 0.00 0.00 3.41
1341 2591 2.064762 GTGAGACACACTAGCTTGCAG 58.935 52.381 0.00 0.00 45.13 4.41
1362 2612 8.575565 TGCAGAAACGTCTTATATTATGAGAC 57.424 34.615 15.28 15.28 41.11 3.36
1437 2701 3.704566 AGAGATACATGCACCTAACGGAA 59.295 43.478 0.00 0.00 0.00 4.30
1494 2758 4.742201 GCGCCTTCTCTGGACGCA 62.742 66.667 0.00 0.00 45.09 5.24
1509 2773 2.562912 GCACGCCAGGACATTGTG 59.437 61.111 0.00 0.00 0.00 3.33
1512 2776 1.150536 ACGCCAGGACATTGTGGTT 59.849 52.632 0.00 0.00 36.10 3.67
1527 2791 0.631753 TGGTTGTGGAGGTTCCCAAA 59.368 50.000 0.00 0.00 38.06 3.28
1599 2863 3.009143 GGTCTAAGATCACCCACCTTGTT 59.991 47.826 0.00 0.00 0.00 2.83
1629 2893 3.245346 TCCGGTGTGGACATGCCA 61.245 61.111 0.00 4.93 43.74 4.92
1788 3052 2.740055 GTGCTGGTGGTCTGCTCG 60.740 66.667 0.00 0.00 40.43 5.03
1793 3057 1.305297 TGGTGGTCTGCTCGGAGAT 60.305 57.895 9.69 0.00 33.89 2.75
1794 3058 1.323271 TGGTGGTCTGCTCGGAGATC 61.323 60.000 9.69 0.00 33.89 2.75
1925 3189 2.280119 GCAGCCGCGGTGATCATA 60.280 61.111 28.70 0.00 32.22 2.15
1985 3249 2.031012 CTGGTGTCTGCGAGCCAA 59.969 61.111 0.00 0.00 0.00 4.52
2361 3631 2.061848 TGGATTGGGGTGTTCTCTTCA 58.938 47.619 0.00 0.00 0.00 3.02
2465 3747 7.384115 GTCATGCAAAAATCTACTATACCGCTA 59.616 37.037 0.00 0.00 0.00 4.26
2579 3864 4.551702 TTGATTGAGAGGACGGATTTGA 57.448 40.909 0.00 0.00 0.00 2.69
2688 3973 0.656259 GCGGATTTACTTCCTTCGCC 59.344 55.000 0.00 0.00 36.35 5.54
2724 4009 1.334160 TGTCTTCCTTACGTGAGCCA 58.666 50.000 0.96 0.00 0.00 4.75
2725 4010 1.899814 TGTCTTCCTTACGTGAGCCAT 59.100 47.619 0.96 0.00 0.00 4.40
2726 4011 2.301870 TGTCTTCCTTACGTGAGCCATT 59.698 45.455 0.96 0.00 0.00 3.16
2727 4012 2.673368 GTCTTCCTTACGTGAGCCATTG 59.327 50.000 0.96 0.00 0.00 2.82
2728 4013 2.301870 TCTTCCTTACGTGAGCCATTGT 59.698 45.455 0.96 0.00 0.00 2.71
2729 4014 2.380084 TCCTTACGTGAGCCATTGTC 57.620 50.000 0.96 0.00 0.00 3.18
2730 4015 1.899814 TCCTTACGTGAGCCATTGTCT 59.100 47.619 0.96 0.00 0.00 3.41
2731 4016 2.094182 TCCTTACGTGAGCCATTGTCTC 60.094 50.000 0.96 0.00 0.00 3.36
2732 4017 2.271800 CTTACGTGAGCCATTGTCTCC 58.728 52.381 0.00 0.00 0.00 3.71
2733 4018 0.172578 TACGTGAGCCATTGTCTCCG 59.827 55.000 0.00 4.72 33.56 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.592669 CCATCATGGAGGACGCGTC 60.593 63.158 30.67 30.67 40.96 5.19
12 13 2.058001 TCCATCATGGAGGACGCGT 61.058 57.895 13.85 13.85 42.67 6.01
13 14 2.814604 TCCATCATGGAGGACGCG 59.185 61.111 0.66 3.53 42.67 6.01
29 30 1.289380 GGCTATCGTGGACCGGATC 59.711 63.158 9.46 1.18 37.11 3.36
30 31 2.207924 GGGCTATCGTGGACCGGAT 61.208 63.158 9.46 3.62 37.11 4.18
31 32 2.836360 GGGCTATCGTGGACCGGA 60.836 66.667 9.46 0.00 37.11 5.14
32 33 1.183030 TATGGGCTATCGTGGACCGG 61.183 60.000 0.00 0.00 33.80 5.28
33 34 0.895530 ATATGGGCTATCGTGGACCG 59.104 55.000 0.00 0.00 33.80 4.79
34 35 2.301870 TCAATATGGGCTATCGTGGACC 59.698 50.000 0.00 0.00 0.00 4.46
35 36 3.326747 GTCAATATGGGCTATCGTGGAC 58.673 50.000 0.00 0.00 0.00 4.02
36 37 2.301870 GGTCAATATGGGCTATCGTGGA 59.698 50.000 0.00 0.00 0.00 4.02
37 38 2.699954 GGTCAATATGGGCTATCGTGG 58.300 52.381 0.00 0.00 0.00 4.94
38 39 2.337583 CGGTCAATATGGGCTATCGTG 58.662 52.381 0.00 0.00 0.00 4.35
39 40 1.337823 GCGGTCAATATGGGCTATCGT 60.338 52.381 0.00 0.00 0.00 3.73
40 41 1.337728 TGCGGTCAATATGGGCTATCG 60.338 52.381 0.00 0.00 0.00 2.92
41 42 2.472695 TGCGGTCAATATGGGCTATC 57.527 50.000 0.00 0.00 0.00 2.08
42 43 4.568072 TTATGCGGTCAATATGGGCTAT 57.432 40.909 0.00 0.00 0.00 2.97
43 44 4.359434 TTTATGCGGTCAATATGGGCTA 57.641 40.909 0.00 0.00 0.00 3.93
44 45 2.949177 TTATGCGGTCAATATGGGCT 57.051 45.000 0.00 0.00 0.00 5.19
45 46 5.590259 AGATATTTATGCGGTCAATATGGGC 59.410 40.000 0.00 0.00 0.00 5.36
46 47 6.260936 GGAGATATTTATGCGGTCAATATGGG 59.739 42.308 0.00 0.00 0.00 4.00
47 48 6.823182 TGGAGATATTTATGCGGTCAATATGG 59.177 38.462 0.00 0.00 0.00 2.74
48 49 7.848223 TGGAGATATTTATGCGGTCAATATG 57.152 36.000 0.00 0.00 0.00 1.78
49 50 9.113838 GAATGGAGATATTTATGCGGTCAATAT 57.886 33.333 0.00 0.00 0.00 1.28
50 51 8.321353 AGAATGGAGATATTTATGCGGTCAATA 58.679 33.333 0.00 0.00 0.00 1.90
51 52 7.170965 AGAATGGAGATATTTATGCGGTCAAT 58.829 34.615 0.00 0.00 0.00 2.57
52 53 6.533730 AGAATGGAGATATTTATGCGGTCAA 58.466 36.000 0.00 0.00 0.00 3.18
53 54 6.114187 AGAATGGAGATATTTATGCGGTCA 57.886 37.500 0.00 0.00 0.00 4.02
54 55 7.439655 GGATAGAATGGAGATATTTATGCGGTC 59.560 40.741 0.00 0.00 0.00 4.79
55 56 7.092891 TGGATAGAATGGAGATATTTATGCGGT 60.093 37.037 0.00 0.00 0.00 5.68
56 57 7.225538 GTGGATAGAATGGAGATATTTATGCGG 59.774 40.741 0.00 0.00 0.00 5.69
57 58 7.765819 TGTGGATAGAATGGAGATATTTATGCG 59.234 37.037 0.00 0.00 0.00 4.73
58 59 9.624373 ATGTGGATAGAATGGAGATATTTATGC 57.376 33.333 0.00 0.00 0.00 3.14
79 80 1.193323 AGAGCTCTGTCCAGATGTGG 58.807 55.000 17.42 1.45 46.63 4.17
80 81 2.223782 GCTAGAGCTCTGTCCAGATGTG 60.224 54.545 26.78 4.54 36.76 3.21
81 82 2.031120 GCTAGAGCTCTGTCCAGATGT 58.969 52.381 26.78 0.00 36.76 3.06
82 83 1.340889 GGCTAGAGCTCTGTCCAGATG 59.659 57.143 26.78 6.92 41.70 2.90
83 84 1.063341 TGGCTAGAGCTCTGTCCAGAT 60.063 52.381 26.78 0.00 41.70 2.90
84 85 0.332972 TGGCTAGAGCTCTGTCCAGA 59.667 55.000 26.78 8.93 41.70 3.86
85 86 0.459489 GTGGCTAGAGCTCTGTCCAG 59.541 60.000 28.46 19.15 41.70 3.86
86 87 0.040351 AGTGGCTAGAGCTCTGTCCA 59.960 55.000 26.78 26.17 41.70 4.02
87 88 1.190643 AAGTGGCTAGAGCTCTGTCC 58.809 55.000 26.78 24.07 41.70 4.02
88 89 2.418060 GGAAAGTGGCTAGAGCTCTGTC 60.418 54.545 26.78 17.20 41.70 3.51
89 90 1.552792 GGAAAGTGGCTAGAGCTCTGT 59.447 52.381 26.78 3.24 41.70 3.41
90 91 1.552337 TGGAAAGTGGCTAGAGCTCTG 59.448 52.381 26.78 16.40 41.70 3.35
91 92 1.552792 GTGGAAAGTGGCTAGAGCTCT 59.447 52.381 22.17 22.17 41.70 4.09
92 93 1.552792 AGTGGAAAGTGGCTAGAGCTC 59.447 52.381 5.27 5.27 41.70 4.09
93 94 1.552792 GAGTGGAAAGTGGCTAGAGCT 59.447 52.381 0.81 0.00 41.70 4.09
94 95 1.406205 GGAGTGGAAAGTGGCTAGAGC 60.406 57.143 0.00 0.00 41.14 4.09
95 96 1.902508 TGGAGTGGAAAGTGGCTAGAG 59.097 52.381 0.00 0.00 0.00 2.43
96 97 1.623811 GTGGAGTGGAAAGTGGCTAGA 59.376 52.381 0.00 0.00 0.00 2.43
97 98 1.625818 AGTGGAGTGGAAAGTGGCTAG 59.374 52.381 0.00 0.00 0.00 3.42
98 99 1.623811 GAGTGGAGTGGAAAGTGGCTA 59.376 52.381 0.00 0.00 0.00 3.93
99 100 0.398318 GAGTGGAGTGGAAAGTGGCT 59.602 55.000 0.00 0.00 0.00 4.75
100 101 0.951040 CGAGTGGAGTGGAAAGTGGC 60.951 60.000 0.00 0.00 0.00 5.01
101 102 0.679505 TCGAGTGGAGTGGAAAGTGG 59.320 55.000 0.00 0.00 0.00 4.00
102 103 1.341531 AGTCGAGTGGAGTGGAAAGTG 59.658 52.381 0.00 0.00 0.00 3.16
103 104 1.705873 AGTCGAGTGGAGTGGAAAGT 58.294 50.000 0.00 0.00 0.00 2.66
104 105 2.821991 AAGTCGAGTGGAGTGGAAAG 57.178 50.000 0.00 0.00 0.00 2.62
105 106 4.100498 ACTTAAAGTCGAGTGGAGTGGAAA 59.900 41.667 0.00 0.00 0.00 3.13
106 107 3.640029 ACTTAAAGTCGAGTGGAGTGGAA 59.360 43.478 0.00 0.00 0.00 3.53
107 108 3.228453 ACTTAAAGTCGAGTGGAGTGGA 58.772 45.455 0.00 0.00 0.00 4.02
108 109 3.662247 ACTTAAAGTCGAGTGGAGTGG 57.338 47.619 0.00 0.00 0.00 4.00
109 110 5.964168 CGTATACTTAAAGTCGAGTGGAGTG 59.036 44.000 11.55 0.00 0.00 3.51
110 111 5.448360 GCGTATACTTAAAGTCGAGTGGAGT 60.448 44.000 0.56 1.22 0.00 3.85
111 112 4.968788 GCGTATACTTAAAGTCGAGTGGAG 59.031 45.833 0.56 0.00 0.00 3.86
112 113 4.201950 GGCGTATACTTAAAGTCGAGTGGA 60.202 45.833 0.56 0.00 0.00 4.02
113 114 4.040376 GGCGTATACTTAAAGTCGAGTGG 58.960 47.826 0.56 0.00 0.00 4.00
114 115 4.498323 GTGGCGTATACTTAAAGTCGAGTG 59.502 45.833 0.56 0.00 0.00 3.51
115 116 4.397417 AGTGGCGTATACTTAAAGTCGAGT 59.603 41.667 0.56 0.00 0.00 4.18
116 117 4.918037 AGTGGCGTATACTTAAAGTCGAG 58.082 43.478 0.56 0.00 0.00 4.04
117 118 4.201950 GGAGTGGCGTATACTTAAAGTCGA 60.202 45.833 0.56 0.00 0.00 4.20
118 119 4.040376 GGAGTGGCGTATACTTAAAGTCG 58.960 47.826 0.56 0.00 0.00 4.18
119 120 4.802563 GTGGAGTGGCGTATACTTAAAGTC 59.197 45.833 0.56 0.00 0.00 3.01
120 121 4.382362 GGTGGAGTGGCGTATACTTAAAGT 60.382 45.833 0.56 0.00 0.00 2.66
121 122 4.117685 GGTGGAGTGGCGTATACTTAAAG 58.882 47.826 0.56 0.00 0.00 1.85
122 123 3.118665 GGGTGGAGTGGCGTATACTTAAA 60.119 47.826 0.56 0.00 0.00 1.52
123 124 2.431782 GGGTGGAGTGGCGTATACTTAA 59.568 50.000 0.56 0.00 0.00 1.85
124 125 2.034124 GGGTGGAGTGGCGTATACTTA 58.966 52.381 0.56 0.00 0.00 2.24
125 126 0.828677 GGGTGGAGTGGCGTATACTT 59.171 55.000 0.56 0.00 0.00 2.24
126 127 0.032416 AGGGTGGAGTGGCGTATACT 60.032 55.000 0.56 0.00 0.00 2.12
127 128 0.388294 GAGGGTGGAGTGGCGTATAC 59.612 60.000 0.00 0.00 0.00 1.47
128 129 0.757935 GGAGGGTGGAGTGGCGTATA 60.758 60.000 0.00 0.00 0.00 1.47
129 130 2.064581 GGAGGGTGGAGTGGCGTAT 61.065 63.158 0.00 0.00 0.00 3.06
130 131 2.682494 GGAGGGTGGAGTGGCGTA 60.682 66.667 0.00 0.00 0.00 4.42
131 132 4.640690 AGGAGGGTGGAGTGGCGT 62.641 66.667 0.00 0.00 0.00 5.68
132 133 3.775654 GAGGAGGGTGGAGTGGCG 61.776 72.222 0.00 0.00 0.00 5.69
133 134 2.284995 AGAGGAGGGTGGAGTGGC 60.285 66.667 0.00 0.00 0.00 5.01
134 135 1.992277 CCAGAGGAGGGTGGAGTGG 60.992 68.421 0.00 0.00 35.67 4.00
135 136 2.664081 GCCAGAGGAGGGTGGAGTG 61.664 68.421 0.00 0.00 35.67 3.51
136 137 2.284995 GCCAGAGGAGGGTGGAGT 60.285 66.667 0.00 0.00 35.67 3.85
137 138 2.040278 AGCCAGAGGAGGGTGGAG 59.960 66.667 0.00 0.00 38.13 3.86
138 139 2.039624 GAGCCAGAGGAGGGTGGA 59.960 66.667 0.00 0.00 40.02 4.02
139 140 3.086600 GGAGCCAGAGGAGGGTGG 61.087 72.222 0.00 0.00 40.02 4.61
140 141 2.040278 AGGAGCCAGAGGAGGGTG 59.960 66.667 0.00 0.00 40.02 4.61
141 142 2.236959 GAGAGGAGCCAGAGGAGGGT 62.237 65.000 0.00 0.00 43.27 4.34
142 143 1.457455 GAGAGGAGCCAGAGGAGGG 60.457 68.421 0.00 0.00 0.00 4.30
143 144 1.457455 GGAGAGGAGCCAGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
144 145 1.827789 CGGAGAGGAGCCAGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
145 146 2.277072 CGGAGAGGAGCCAGAGGA 59.723 66.667 0.00 0.00 0.00 3.71
146 147 2.837291 CCGGAGAGGAGCCAGAGG 60.837 72.222 0.00 0.00 45.00 3.69
147 148 3.535962 GCCGGAGAGGAGCCAGAG 61.536 72.222 5.05 0.00 45.00 3.35
152 153 4.851214 AGGAGGCCGGAGAGGAGC 62.851 72.222 5.05 0.00 45.00 4.70
153 154 2.520741 GAGGAGGCCGGAGAGGAG 60.521 72.222 5.05 0.00 45.00 3.69
154 155 4.144727 GGAGGAGGCCGGAGAGGA 62.145 72.222 5.05 0.00 45.00 3.71
162 163 4.621269 TCCTTATCGGAGGAGGCC 57.379 61.111 0.00 0.00 40.87 5.19
169 170 0.830648 CTGTTGCCCTCCTTATCGGA 59.169 55.000 0.00 0.00 40.30 4.55
170 171 0.830648 TCTGTTGCCCTCCTTATCGG 59.169 55.000 0.00 0.00 0.00 4.18
171 172 2.366916 AGATCTGTTGCCCTCCTTATCG 59.633 50.000 0.00 0.00 0.00 2.92
172 173 3.389329 TCAGATCTGTTGCCCTCCTTATC 59.611 47.826 21.92 0.00 0.00 1.75
173 174 3.135530 GTCAGATCTGTTGCCCTCCTTAT 59.864 47.826 21.92 0.00 0.00 1.73
174 175 2.501723 GTCAGATCTGTTGCCCTCCTTA 59.498 50.000 21.92 0.00 0.00 2.69
175 176 1.280421 GTCAGATCTGTTGCCCTCCTT 59.720 52.381 21.92 0.00 0.00 3.36
176 177 0.908198 GTCAGATCTGTTGCCCTCCT 59.092 55.000 21.92 0.00 0.00 3.69
177 178 0.615331 TGTCAGATCTGTTGCCCTCC 59.385 55.000 21.92 2.87 0.00 4.30
178 179 1.277557 AGTGTCAGATCTGTTGCCCTC 59.722 52.381 21.92 7.44 0.00 4.30
179 180 1.002888 CAGTGTCAGATCTGTTGCCCT 59.997 52.381 21.92 9.39 0.00 5.19
180 181 1.446907 CAGTGTCAGATCTGTTGCCC 58.553 55.000 21.92 7.42 0.00 5.36
181 182 1.446907 CCAGTGTCAGATCTGTTGCC 58.553 55.000 21.92 9.49 0.00 4.52
182 183 0.801251 GCCAGTGTCAGATCTGTTGC 59.199 55.000 21.92 13.63 0.00 4.17
183 184 1.073964 CGCCAGTGTCAGATCTGTTG 58.926 55.000 21.92 15.00 0.00 3.33
184 185 0.671781 GCGCCAGTGTCAGATCTGTT 60.672 55.000 21.92 4.52 0.00 3.16
185 186 1.079543 GCGCCAGTGTCAGATCTGT 60.080 57.895 21.92 0.00 0.00 3.41
186 187 2.163390 CGCGCCAGTGTCAGATCTG 61.163 63.158 17.07 17.07 0.00 2.90
187 188 2.182791 CGCGCCAGTGTCAGATCT 59.817 61.111 0.00 0.00 0.00 2.75
188 189 2.125912 ACGCGCCAGTGTCAGATC 60.126 61.111 5.73 0.00 36.08 2.75
194 195 0.736325 GTATTCAGACGCGCCAGTGT 60.736 55.000 5.73 0.00 44.89 3.55
195 196 1.742900 CGTATTCAGACGCGCCAGTG 61.743 60.000 5.73 0.00 35.79 3.66
196 197 1.516386 CGTATTCAGACGCGCCAGT 60.516 57.895 5.73 0.00 35.79 4.00
197 198 1.472276 GACGTATTCAGACGCGCCAG 61.472 60.000 5.73 0.00 46.87 4.85
198 199 1.515519 GACGTATTCAGACGCGCCA 60.516 57.895 5.73 0.00 46.87 5.69
199 200 2.565394 CGACGTATTCAGACGCGCC 61.565 63.158 5.73 0.00 46.87 6.53
200 201 1.581912 TCGACGTATTCAGACGCGC 60.582 57.895 5.73 0.00 46.87 6.86
201 202 0.247576 AGTCGACGTATTCAGACGCG 60.248 55.000 10.46 3.53 46.87 6.01
202 203 1.181001 CAGTCGACGTATTCAGACGC 58.819 55.000 10.46 0.00 46.87 5.19
204 205 3.169733 GTTCCAGTCGACGTATTCAGAC 58.830 50.000 10.46 0.00 0.00 3.51
205 206 2.815503 TGTTCCAGTCGACGTATTCAGA 59.184 45.455 10.46 0.00 0.00 3.27
206 207 3.211803 TGTTCCAGTCGACGTATTCAG 57.788 47.619 10.46 0.00 0.00 3.02
207 208 3.507786 CATGTTCCAGTCGACGTATTCA 58.492 45.455 10.46 8.86 0.00 2.57
208 209 2.858344 CCATGTTCCAGTCGACGTATTC 59.142 50.000 10.46 3.22 0.00 1.75
209 210 2.232941 ACCATGTTCCAGTCGACGTATT 59.767 45.455 10.46 0.00 0.00 1.89
210 211 1.822990 ACCATGTTCCAGTCGACGTAT 59.177 47.619 10.46 0.00 0.00 3.06
211 212 1.200716 GACCATGTTCCAGTCGACGTA 59.799 52.381 10.46 0.00 0.00 3.57
212 213 0.038526 GACCATGTTCCAGTCGACGT 60.039 55.000 10.46 0.00 0.00 4.34
213 214 0.736325 GGACCATGTTCCAGTCGACG 60.736 60.000 10.46 5.16 35.49 5.12
214 215 0.391263 GGGACCATGTTCCAGTCGAC 60.391 60.000 11.86 7.70 37.40 4.20
215 216 0.834261 TGGGACCATGTTCCAGTCGA 60.834 55.000 11.86 0.00 36.07 4.20
216 217 0.036164 TTGGGACCATGTTCCAGTCG 59.964 55.000 11.86 0.00 42.81 4.18
217 218 1.826385 CTTGGGACCATGTTCCAGTC 58.174 55.000 11.86 1.05 42.81 3.51
218 219 0.251341 GCTTGGGACCATGTTCCAGT 60.251 55.000 11.86 0.00 42.81 4.00
219 220 0.251297 TGCTTGGGACCATGTTCCAG 60.251 55.000 11.86 1.96 42.81 3.86
220 221 0.187117 TTGCTTGGGACCATGTTCCA 59.813 50.000 11.86 3.31 39.83 3.53
221 222 0.890683 CTTGCTTGGGACCATGTTCC 59.109 55.000 0.00 0.00 34.52 3.62
222 223 0.890683 CCTTGCTTGGGACCATGTTC 59.109 55.000 6.17 0.00 0.00 3.18
223 224 1.187567 GCCTTGCTTGGGACCATGTT 61.188 55.000 6.17 0.00 0.00 2.71
224 225 1.607467 GCCTTGCTTGGGACCATGT 60.607 57.895 6.17 0.00 0.00 3.21
225 226 2.353610 GGCCTTGCTTGGGACCATG 61.354 63.158 0.00 0.00 0.00 3.66
226 227 2.037847 GGCCTTGCTTGGGACCAT 59.962 61.111 0.00 0.00 0.00 3.55
227 228 4.659172 CGGCCTTGCTTGGGACCA 62.659 66.667 0.00 0.00 0.00 4.02
228 229 4.344865 TCGGCCTTGCTTGGGACC 62.345 66.667 0.00 0.00 0.00 4.46
229 230 2.747855 CTCGGCCTTGCTTGGGAC 60.748 66.667 0.00 0.00 0.00 4.46
230 231 4.033776 CCTCGGCCTTGCTTGGGA 62.034 66.667 0.00 0.00 0.00 4.37
232 233 4.351054 ACCCTCGGCCTTGCTTGG 62.351 66.667 0.00 0.00 0.00 3.61
233 234 2.826777 ATCACCCTCGGCCTTGCTTG 62.827 60.000 0.00 0.00 0.00 4.01
234 235 1.271840 TATCACCCTCGGCCTTGCTT 61.272 55.000 0.00 0.00 0.00 3.91
235 236 1.056700 ATATCACCCTCGGCCTTGCT 61.057 55.000 0.00 0.00 0.00 3.91
236 237 0.886490 CATATCACCCTCGGCCTTGC 60.886 60.000 0.00 0.00 0.00 4.01
237 238 0.250467 CCATATCACCCTCGGCCTTG 60.250 60.000 0.00 0.00 0.00 3.61
238 239 2.056906 GCCATATCACCCTCGGCCTT 62.057 60.000 0.00 0.00 36.73 4.35
239 240 2.520536 GCCATATCACCCTCGGCCT 61.521 63.158 0.00 0.00 36.73 5.19
240 241 2.032681 GCCATATCACCCTCGGCC 59.967 66.667 0.00 0.00 36.73 6.13
241 242 2.032681 GGCCATATCACCCTCGGC 59.967 66.667 0.00 0.00 42.21 5.54
242 243 2.343758 CGGCCATATCACCCTCGG 59.656 66.667 2.24 0.00 0.00 4.63
243 244 1.006102 GACGGCCATATCACCCTCG 60.006 63.158 2.24 0.00 0.00 4.63
244 245 1.371558 GGACGGCCATATCACCCTC 59.628 63.158 0.00 0.00 0.00 4.30
245 246 2.507854 CGGACGGCCATATCACCCT 61.508 63.158 8.76 0.00 0.00 4.34
246 247 2.030562 CGGACGGCCATATCACCC 59.969 66.667 8.76 0.00 0.00 4.61
247 248 2.665185 GCGGACGGCCATATCACC 60.665 66.667 8.76 0.00 34.80 4.02
269 270 1.741770 CCAAGGAAACGGCGGAGAG 60.742 63.158 13.24 0.00 0.00 3.20
270 271 2.167398 CTCCAAGGAAACGGCGGAGA 62.167 60.000 13.24 0.00 43.46 3.71
271 272 1.741770 CTCCAAGGAAACGGCGGAG 60.742 63.158 13.24 1.02 38.15 4.63
272 273 2.345991 CTCCAAGGAAACGGCGGA 59.654 61.111 13.24 0.00 0.00 5.54
273 274 2.746277 CCTCCAAGGAAACGGCGG 60.746 66.667 13.24 0.00 37.67 6.13
274 275 2.345991 TCCTCCAAGGAAACGGCG 59.654 61.111 4.80 4.80 42.51 6.46
290 291 0.383231 CGCCAGCTGGAATTGGATTC 59.617 55.000 37.21 13.87 36.55 2.52
291 292 1.039233 CCGCCAGCTGGAATTGGATT 61.039 55.000 37.21 0.00 36.55 3.01
292 293 1.454479 CCGCCAGCTGGAATTGGAT 60.454 57.895 37.21 0.00 36.55 3.41
293 294 2.045045 CCGCCAGCTGGAATTGGA 60.045 61.111 37.21 0.00 36.55 3.53
294 295 2.045045 TCCGCCAGCTGGAATTGG 60.045 61.111 37.21 27.86 37.39 3.16
295 296 2.409870 GGTCCGCCAGCTGGAATTG 61.410 63.158 37.21 20.61 37.23 2.32
296 297 2.044946 GGTCCGCCAGCTGGAATT 60.045 61.111 37.21 0.00 37.23 2.17
297 298 4.473520 CGGTCCGCCAGCTGGAAT 62.474 66.667 37.21 0.00 37.23 3.01
310 311 4.570663 CACGGGATCGCCTCGGTC 62.571 72.222 3.90 0.00 40.63 4.79
314 315 2.325393 AATTCCCACGGGATCGCCTC 62.325 60.000 5.43 0.00 44.74 4.70
315 316 2.325393 GAATTCCCACGGGATCGCCT 62.325 60.000 5.43 0.00 44.74 5.52
316 317 1.892391 GAATTCCCACGGGATCGCC 60.892 63.158 5.43 0.00 44.74 5.54
317 318 0.535102 ATGAATTCCCACGGGATCGC 60.535 55.000 5.43 0.00 44.74 4.58
318 319 1.603802 CAATGAATTCCCACGGGATCG 59.396 52.381 5.43 0.00 44.74 3.69
319 320 1.338020 GCAATGAATTCCCACGGGATC 59.662 52.381 5.43 2.02 44.74 3.36
320 321 1.341877 TGCAATGAATTCCCACGGGAT 60.342 47.619 5.43 0.00 44.74 3.85
321 322 0.038890 TGCAATGAATTCCCACGGGA 59.961 50.000 0.00 0.00 43.52 5.14
322 323 1.067516 GATGCAATGAATTCCCACGGG 59.932 52.381 2.27 0.00 0.00 5.28
323 324 1.067516 GGATGCAATGAATTCCCACGG 59.932 52.381 2.27 0.00 0.00 4.94
324 325 1.268692 CGGATGCAATGAATTCCCACG 60.269 52.381 2.27 0.00 0.00 4.94
325 326 1.750778 ACGGATGCAATGAATTCCCAC 59.249 47.619 2.27 0.00 0.00 4.61
326 327 1.750206 CACGGATGCAATGAATTCCCA 59.250 47.619 2.27 0.00 0.00 4.37
327 328 2.497107 CACGGATGCAATGAATTCCC 57.503 50.000 2.27 0.00 0.00 3.97
339 340 4.465512 GCGCCACTTGCACGGATG 62.466 66.667 0.00 0.00 41.33 3.51
340 341 4.704833 AGCGCCACTTGCACGGAT 62.705 61.111 2.29 0.00 41.33 4.18
341 342 4.927782 AAGCGCCACTTGCACGGA 62.928 61.111 2.29 0.00 41.33 4.69
348 349 2.282391 TGCATCCAAGCGCCACTT 60.282 55.556 2.29 0.00 40.05 3.16
349 350 3.058160 GTGCATCCAAGCGCCACT 61.058 61.111 2.29 0.00 39.04 4.00
353 354 4.487412 GCAGGTGCATCCAAGCGC 62.487 66.667 0.00 0.00 44.00 5.92
355 356 3.044059 GACGCAGGTGCATCCAAGC 62.044 63.158 2.33 3.31 42.21 4.01
356 357 2.743752 CGACGCAGGTGCATCCAAG 61.744 63.158 2.33 0.00 42.21 3.61
357 358 2.741985 CGACGCAGGTGCATCCAA 60.742 61.111 2.33 0.00 42.21 3.53
358 359 4.758251 CCGACGCAGGTGCATCCA 62.758 66.667 2.33 0.00 42.21 3.41
359 360 3.365291 TACCGACGCAGGTGCATCC 62.365 63.158 12.10 0.00 45.54 3.51
360 361 1.878522 CTACCGACGCAGGTGCATC 60.879 63.158 12.10 0.00 45.54 3.91
361 362 2.184322 CTACCGACGCAGGTGCAT 59.816 61.111 12.10 0.00 45.54 3.96
362 363 4.735132 GCTACCGACGCAGGTGCA 62.735 66.667 12.10 0.00 45.54 4.57
363 364 4.436998 AGCTACCGACGCAGGTGC 62.437 66.667 12.10 12.48 45.54 5.01
364 365 2.202623 GAGCTACCGACGCAGGTG 60.203 66.667 12.10 4.37 45.54 4.00
366 367 3.506096 TCGAGCTACCGACGCAGG 61.506 66.667 0.00 0.00 33.14 4.85
397 398 4.280019 AACCCGGGGCTGTTCACC 62.280 66.667 27.92 0.00 0.00 4.02
398 399 2.983592 CAACCCGGGGCTGTTCAC 60.984 66.667 27.92 0.00 0.00 3.18
399 400 3.172106 TCAACCCGGGGCTGTTCA 61.172 61.111 27.92 2.90 0.00 3.18
400 401 2.671963 GTCAACCCGGGGCTGTTC 60.672 66.667 27.92 14.57 0.00 3.18
401 402 4.636435 CGTCAACCCGGGGCTGTT 62.636 66.667 27.92 6.89 0.00 3.16
409 410 2.501223 TAGAGCTTGCCGTCAACCCG 62.501 60.000 0.00 0.00 0.00 5.28
410 411 1.019805 GTAGAGCTTGCCGTCAACCC 61.020 60.000 0.00 0.00 0.00 4.11
411 412 1.352156 CGTAGAGCTTGCCGTCAACC 61.352 60.000 0.00 0.00 0.00 3.77
412 413 1.956620 GCGTAGAGCTTGCCGTCAAC 61.957 60.000 0.00 0.00 44.04 3.18
413 414 1.736645 GCGTAGAGCTTGCCGTCAA 60.737 57.895 0.00 0.00 44.04 3.18
414 415 2.126071 GCGTAGAGCTTGCCGTCA 60.126 61.111 0.00 0.00 44.04 4.35
424 425 1.625616 CGGGTGTGTAAAGCGTAGAG 58.374 55.000 0.00 0.00 0.00 2.43
425 426 0.244450 CCGGGTGTGTAAAGCGTAGA 59.756 55.000 0.00 0.00 0.00 2.59
426 427 0.244450 TCCGGGTGTGTAAAGCGTAG 59.756 55.000 0.00 0.00 0.00 3.51
427 428 0.038343 GTCCGGGTGTGTAAAGCGTA 60.038 55.000 0.00 0.00 0.00 4.42
428 429 1.301165 GTCCGGGTGTGTAAAGCGT 60.301 57.895 0.00 0.00 0.00 5.07
429 430 1.005394 AGTCCGGGTGTGTAAAGCG 60.005 57.895 0.00 0.00 0.00 4.68
430 431 0.034337 TCAGTCCGGGTGTGTAAAGC 59.966 55.000 0.00 0.00 0.00 3.51
431 432 1.607251 GGTCAGTCCGGGTGTGTAAAG 60.607 57.143 0.00 0.00 0.00 1.85
432 433 0.393820 GGTCAGTCCGGGTGTGTAAA 59.606 55.000 0.00 0.00 0.00 2.01
433 434 1.474332 GGGTCAGTCCGGGTGTGTAA 61.474 60.000 0.00 0.00 37.00 2.41
434 435 1.909781 GGGTCAGTCCGGGTGTGTA 60.910 63.158 0.00 0.00 37.00 2.90
435 436 3.239253 GGGTCAGTCCGGGTGTGT 61.239 66.667 0.00 0.00 37.00 3.72
436 437 4.373116 CGGGTCAGTCCGGGTGTG 62.373 72.222 0.00 0.00 45.78 3.82
443 444 1.596895 GAGAGGTGACGGGTCAGTCC 61.597 65.000 0.94 1.16 40.75 3.85
444 445 0.894184 TGAGAGGTGACGGGTCAGTC 60.894 60.000 0.94 2.71 40.75 3.51
445 446 0.469331 TTGAGAGGTGACGGGTCAGT 60.469 55.000 0.94 0.00 40.75 3.41
446 447 0.679505 TTTGAGAGGTGACGGGTCAG 59.320 55.000 0.94 0.00 40.75 3.51
447 448 0.679505 CTTTGAGAGGTGACGGGTCA 59.320 55.000 0.00 0.00 37.24 4.02
448 449 0.037232 CCTTTGAGAGGTGACGGGTC 60.037 60.000 0.00 0.00 40.95 4.46
449 450 2.058675 CCTTTGAGAGGTGACGGGT 58.941 57.895 0.00 0.00 40.95 5.28
458 459 0.388649 CGGACGGTGACCTTTGAGAG 60.389 60.000 0.00 0.00 0.00 3.20
459 460 1.663739 CGGACGGTGACCTTTGAGA 59.336 57.895 0.00 0.00 0.00 3.27
460 461 2.027625 GCGGACGGTGACCTTTGAG 61.028 63.158 0.00 0.00 0.00 3.02
461 462 2.029964 GCGGACGGTGACCTTTGA 59.970 61.111 0.00 0.00 0.00 2.69
462 463 3.411351 CGCGGACGGTGACCTTTG 61.411 66.667 0.00 0.00 34.97 2.77
486 487 1.940883 TAGACCGTAAGCTGCGTGGG 61.941 60.000 9.58 2.27 0.00 4.61
487 488 0.525668 CTAGACCGTAAGCTGCGTGG 60.526 60.000 9.58 0.00 0.00 4.94
488 489 0.450583 TCTAGACCGTAAGCTGCGTG 59.549 55.000 9.58 4.65 0.00 5.34
489 490 1.171308 TTCTAGACCGTAAGCTGCGT 58.829 50.000 9.58 0.00 0.00 5.24
490 491 2.186076 CTTTCTAGACCGTAAGCTGCG 58.814 52.381 0.00 4.20 0.00 5.18
491 492 2.924290 CACTTTCTAGACCGTAAGCTGC 59.076 50.000 0.00 0.00 0.00 5.25
492 493 3.056749 ACCACTTTCTAGACCGTAAGCTG 60.057 47.826 0.00 0.00 0.00 4.24
493 494 3.163467 ACCACTTTCTAGACCGTAAGCT 58.837 45.455 0.00 0.00 0.00 3.74
494 495 3.589495 ACCACTTTCTAGACCGTAAGC 57.411 47.619 0.00 0.00 0.00 3.09
495 496 5.448904 GCTCTACCACTTTCTAGACCGTAAG 60.449 48.000 0.00 0.00 0.00 2.34
496 497 4.397417 GCTCTACCACTTTCTAGACCGTAA 59.603 45.833 0.00 0.00 0.00 3.18
497 498 3.944015 GCTCTACCACTTTCTAGACCGTA 59.056 47.826 0.00 0.00 0.00 4.02
498 499 2.754002 GCTCTACCACTTTCTAGACCGT 59.246 50.000 0.00 0.00 0.00 4.83
499 500 2.753452 TGCTCTACCACTTTCTAGACCG 59.247 50.000 0.00 0.00 0.00 4.79
500 501 4.803098 TTGCTCTACCACTTTCTAGACC 57.197 45.455 0.00 0.00 0.00 3.85
501 502 7.439655 CCATATTTGCTCTACCACTTTCTAGAC 59.560 40.741 0.00 0.00 0.00 2.59
502 503 7.344612 TCCATATTTGCTCTACCACTTTCTAGA 59.655 37.037 0.00 0.00 0.00 2.43
503 504 7.500992 TCCATATTTGCTCTACCACTTTCTAG 58.499 38.462 0.00 0.00 0.00 2.43
504 505 7.432148 TCCATATTTGCTCTACCACTTTCTA 57.568 36.000 0.00 0.00 0.00 2.10
505 506 6.313519 TCCATATTTGCTCTACCACTTTCT 57.686 37.500 0.00 0.00 0.00 2.52
511 512 6.663093 ACAATTGTTCCATATTTGCTCTACCA 59.337 34.615 4.92 0.00 0.00 3.25
513 514 6.907212 CGACAATTGTTCCATATTTGCTCTAC 59.093 38.462 13.36 0.00 0.00 2.59
526 527 4.032331 CACCAACAAAACGACAATTGTTCC 59.968 41.667 13.36 0.00 45.31 3.62
610 692 2.099831 GGACTCGTACGTGCTCGG 59.900 66.667 16.05 2.86 41.85 4.63
634 716 2.042831 GCTCCATCTGCCCACACAC 61.043 63.158 0.00 0.00 0.00 3.82
637 719 2.352422 GTGCTCCATCTGCCCACA 59.648 61.111 0.00 0.00 0.00 4.17
678 760 1.971695 CCTTGGGAGTTCGTTGGGC 60.972 63.158 0.00 0.00 0.00 5.36
679 761 1.971695 GCCTTGGGAGTTCGTTGGG 60.972 63.158 0.00 0.00 0.00 4.12
680 762 1.971695 GGCCTTGGGAGTTCGTTGG 60.972 63.158 0.00 0.00 0.00 3.77
681 763 1.228124 TGGCCTTGGGAGTTCGTTG 60.228 57.895 3.32 0.00 0.00 4.10
682 764 1.073199 CTGGCCTTGGGAGTTCGTT 59.927 57.895 3.32 0.00 0.00 3.85
683 765 2.750350 CTGGCCTTGGGAGTTCGT 59.250 61.111 3.32 0.00 0.00 3.85
684 766 2.045926 CCTGGCCTTGGGAGTTCG 60.046 66.667 3.32 0.00 0.00 3.95
685 767 2.361737 GCCTGGCCTTGGGAGTTC 60.362 66.667 7.66 0.00 0.00 3.01
686 768 4.351054 CGCCTGGCCTTGGGAGTT 62.351 66.667 14.12 0.00 0.00 3.01
688 770 4.785453 GTCGCCTGGCCTTGGGAG 62.785 72.222 14.12 11.26 0.00 4.30
700 782 2.725641 GGTTGTTGTTGGGTCGCC 59.274 61.111 0.00 0.00 0.00 5.54
711 793 1.519408 GTACGTGCTCATGGGTTGTT 58.481 50.000 0.00 0.00 0.00 2.83
713 795 0.669318 ACGTACGTGCTCATGGGTTG 60.669 55.000 22.14 0.00 0.00 3.77
714 796 0.669318 CACGTACGTGCTCATGGGTT 60.669 55.000 32.93 0.00 39.39 4.11
715 797 1.080093 CACGTACGTGCTCATGGGT 60.080 57.895 32.93 0.00 39.39 4.51
739 842 0.691078 GGTAGGAGATGGGTGGCTCA 60.691 60.000 0.00 0.00 32.83 4.26
741 844 1.384643 GGGTAGGAGATGGGTGGCT 60.385 63.158 0.00 0.00 0.00 4.75
760 868 2.676608 TGGATGGCCACGAATGCT 59.323 55.556 8.16 0.00 39.92 3.79
840 954 1.891450 CGGGAGATATAGGCGGGAAGT 60.891 57.143 0.00 0.00 0.00 3.01
869 983 1.396996 GTGCGGTGTGGTGATATGAAC 59.603 52.381 0.00 0.00 0.00 3.18
870 984 1.002544 TGTGCGGTGTGGTGATATGAA 59.997 47.619 0.00 0.00 0.00 2.57
874 988 1.004320 GGTGTGCGGTGTGGTGATA 60.004 57.895 0.00 0.00 0.00 2.15
876 995 3.748660 CTGGTGTGCGGTGTGGTGA 62.749 63.158 0.00 0.00 0.00 4.02
880 999 0.602638 ATGTACTGGTGTGCGGTGTG 60.603 55.000 0.00 0.00 0.00 3.82
886 1005 1.236616 TGCTGCATGTACTGGTGTGC 61.237 55.000 0.00 0.00 38.05 4.57
966 1105 1.226974 CGTACCACCGGCAGAGATG 60.227 63.158 0.00 0.00 0.00 2.90
967 1106 0.394762 TACGTACCACCGGCAGAGAT 60.395 55.000 0.00 0.00 0.00 2.75
969 1108 1.028330 TCTACGTACCACCGGCAGAG 61.028 60.000 0.00 0.00 0.00 3.35
972 1133 2.048023 CCTCTACGTACCACCGGCA 61.048 63.158 0.00 0.00 0.00 5.69
977 1138 4.701765 TGATCTCTACCTCTACGTACCAC 58.298 47.826 0.00 0.00 0.00 4.16
1005 1220 1.154016 CTCGACCGTCATCGTTGCT 60.154 57.895 0.00 0.00 42.80 3.91
1008 1223 1.654954 CCTCCTCGACCGTCATCGTT 61.655 60.000 0.00 0.00 42.80 3.85
1020 1235 2.896443 GCCTTCCTCACCTCCTCG 59.104 66.667 0.00 0.00 0.00 4.63
1117 1332 4.639310 GGTGATCTTGAAGTAGTAGTCCGA 59.361 45.833 0.00 0.00 0.00 4.55
1311 2561 8.067751 AGCTAGTGTGTCTCACAATATAAGAA 57.932 34.615 9.76 0.00 46.28 2.52
1328 2578 2.135933 GACGTTTCTGCAAGCTAGTGT 58.864 47.619 0.00 0.00 0.00 3.55
1362 2612 6.581919 TGAAGCATTGTTTGTTATTGTCATCG 59.418 34.615 0.00 0.00 0.00 3.84
1365 2615 8.659925 AAATGAAGCATTGTTTGTTATTGTCA 57.340 26.923 0.00 0.00 34.04 3.58
1368 2618 8.225107 CCTGAAATGAAGCATTGTTTGTTATTG 58.775 33.333 0.00 0.00 34.04 1.90
1437 2701 3.116174 GGGGTTTTCCTGTAGGATCTCT 58.884 50.000 0.66 0.00 44.98 3.10
1452 2716 0.398381 AGGCACACATGTTGGGGTTT 60.398 50.000 0.00 0.00 0.00 3.27
1482 2746 3.611674 TGGCGTGCGTCCAGAGAA 61.612 61.111 4.22 0.00 0.00 2.87
1494 2758 1.150536 AACCACAATGTCCTGGCGT 59.849 52.632 0.00 0.00 0.00 5.68
1635 2899 3.369471 GCATCTTGGTTAGCTGGTAGTCA 60.369 47.826 0.00 0.00 0.00 3.41
1770 3034 2.740055 GAGCAGACCACCAGCACG 60.740 66.667 0.00 0.00 0.00 5.34
1985 3249 1.895798 TCTGAGTCTGGCAGAATCGTT 59.104 47.619 32.01 12.20 41.81 3.85
2237 3507 3.134623 ACATGTTGCCATATTCGGAGAGA 59.865 43.478 0.00 0.00 38.43 3.10
2465 3747 6.699575 AGAGCAAACTTAATTGAGTGTTGT 57.300 33.333 17.84 10.41 31.84 3.32
2497 3779 6.129414 ACACATACAAACCACATAGGGTAA 57.871 37.500 0.00 0.00 41.32 2.85
2672 3957 1.296727 CCGGGCGAAGGAAGTAAATC 58.703 55.000 0.00 0.00 0.00 2.17
2688 3973 0.673437 ACAATGCTGAAACAACCCGG 59.327 50.000 0.00 0.00 0.00 5.73
2724 4009 1.237285 GCCAACACTGCGGAGACAAT 61.237 55.000 12.26 0.00 0.00 2.71
2725 4010 1.891919 GCCAACACTGCGGAGACAA 60.892 57.895 12.26 0.00 0.00 3.18
2726 4011 1.468506 TAGCCAACACTGCGGAGACA 61.469 55.000 12.26 0.00 0.00 3.41
2727 4012 0.737715 CTAGCCAACACTGCGGAGAC 60.738 60.000 12.26 0.00 0.00 3.36
2728 4013 0.898326 TCTAGCCAACACTGCGGAGA 60.898 55.000 12.26 0.00 0.00 3.71
2729 4014 0.176680 ATCTAGCCAACACTGCGGAG 59.823 55.000 0.85 0.85 0.00 4.63
2730 4015 0.175760 GATCTAGCCAACACTGCGGA 59.824 55.000 0.00 0.00 0.00 5.54
2731 4016 0.176680 AGATCTAGCCAACACTGCGG 59.823 55.000 0.00 0.00 0.00 5.69
2732 4017 1.134995 TGAGATCTAGCCAACACTGCG 60.135 52.381 0.00 0.00 0.00 5.18
2733 4018 2.680312 TGAGATCTAGCCAACACTGC 57.320 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.