Multiple sequence alignment - TraesCS2D01G027500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G027500 chr2D 100.000 5303 0 0 1 5303 11427606 11422304 0.000000e+00 9793.0
1 TraesCS2D01G027500 chr2D 82.023 1819 321 6 2051 3866 2342223 2344038 0.000000e+00 1543.0
2 TraesCS2D01G027500 chr2D 81.201 1798 328 10 2068 3860 5395977 5397769 0.000000e+00 1439.0
3 TraesCS2D01G027500 chr2D 78.385 1263 221 34 561 1809 5388582 5389806 0.000000e+00 773.0
4 TraesCS2D01G027500 chr2D 92.715 302 17 5 4442 4738 11460986 11460685 1.060000e-116 431.0
5 TraesCS2D01G027500 chr2D 83.758 314 28 12 4442 4738 11432974 11432667 5.230000e-70 276.0
6 TraesCS2D01G027500 chr2D 81.288 326 23 18 4740 5039 11459941 11459628 4.130000e-56 230.0
7 TraesCS2D01G027500 chr2D 73.881 536 128 11 1445 1974 12774247 12773718 2.500000e-48 204.0
8 TraesCS2D01G027500 chr2D 88.667 150 14 3 268 414 5388270 5388419 4.220000e-41 180.0
9 TraesCS2D01G027500 chr2D 72.291 563 152 4 1459 2019 12774665 12774105 7.060000e-39 172.0
10 TraesCS2D01G027500 chr2B 93.434 4249 195 25 539 4734 17831340 17827123 0.000000e+00 6224.0
11 TraesCS2D01G027500 chr2B 82.524 3067 512 19 817 3868 6159819 6156762 0.000000e+00 2673.0
12 TraesCS2D01G027500 chr2B 83.793 1814 285 7 2051 3861 6058048 6056241 0.000000e+00 1712.0
13 TraesCS2D01G027500 chr2B 78.990 1347 237 34 561 1888 6040498 6039179 0.000000e+00 878.0
14 TraesCS2D01G027500 chr2B 79.403 1272 214 36 561 1812 6140160 6138917 0.000000e+00 854.0
15 TraesCS2D01G027500 chr2B 93.836 146 6 2 4739 4881 17826821 17826676 3.220000e-52 217.0
16 TraesCS2D01G027500 chr2B 76.855 337 76 2 1638 1973 6139235 6138900 7.010000e-44 189.0
17 TraesCS2D01G027500 chr2B 80.169 237 44 3 1335 1570 6058907 6058673 1.960000e-39 174.0
18 TraesCS2D01G027500 chr2B 86.503 163 12 2 5145 5303 17826636 17826480 2.540000e-38 171.0
19 TraesCS2D01G027500 chr2B 76.573 286 63 4 1749 2032 6159028 6158745 2.560000e-33 154.0
20 TraesCS2D01G027500 chr2B 93.478 46 3 0 199 244 163430860 163430815 9.530000e-08 69.4
21 TraesCS2D01G027500 chr2B 92.857 42 3 0 203 244 66768773 66768814 1.590000e-05 62.1
22 TraesCS2D01G027500 chr2A 83.754 1982 304 16 1890 3866 3975981 3977949 0.000000e+00 1860.0
23 TraesCS2D01G027500 chr2A 81.728 1817 325 7 2051 3864 2334832 2336644 0.000000e+00 1509.0
24 TraesCS2D01G027500 chr2A 79.096 1349 241 28 561 1888 4037525 4038853 0.000000e+00 891.0
25 TraesCS2D01G027500 chr2A 81.287 1010 170 16 814 1812 3974975 3975976 0.000000e+00 800.0
26 TraesCS2D01G027500 chr2A 94.156 308 10 7 5002 5303 12022595 12022290 3.740000e-126 462.0
27 TraesCS2D01G027500 chr2A 85.479 303 33 7 4442 4738 12035282 12034985 6.670000e-79 305.0
28 TraesCS2D01G027500 chr2A 82.353 323 24 9 4742 5039 12034239 12033925 3.170000e-62 250.0
29 TraesCS2D01G027500 chr2A 89.157 166 11 3 4761 4925 12022753 12022594 3.240000e-47 200.0
30 TraesCS2D01G027500 chr2A 89.333 150 13 3 268 414 4037213 4037362 9.070000e-43 185.0
31 TraesCS2D01G027500 chr2A 72.308 520 136 7 1459 1974 14921509 14920994 7.110000e-34 156.0
32 TraesCS2D01G027500 chr2A 91.954 87 4 3 4443 4526 12026607 12026521 9.330000e-23 119.0
33 TraesCS2D01G027500 chr3B 81.693 1819 327 6 2051 3866 52892521 52890706 0.000000e+00 1509.0
34 TraesCS2D01G027500 chr3B 100.000 28 0 0 200 227 484331639 484331612 1.000000e-02 52.8
35 TraesCS2D01G027500 chr4D 80.684 1843 340 15 2051 3887 3714231 3716063 0.000000e+00 1417.0
36 TraesCS2D01G027500 chr7D 83.904 584 44 27 4743 5303 430993409 430992853 3.660000e-141 512.0
37 TraesCS2D01G027500 chr7D 96.335 191 7 0 1 191 61178295 61178485 1.110000e-81 315.0
38 TraesCS2D01G027500 chr7D 94.764 191 10 0 1 191 61185778 61185968 1.120000e-76 298.0
39 TraesCS2D01G027500 chr4B 75.508 837 190 12 1186 2013 6039481 6040311 3.850000e-106 396.0
40 TraesCS2D01G027500 chr5D 80.789 583 36 34 4777 5303 526714930 526714368 2.320000e-103 387.0
41 TraesCS2D01G027500 chr5D 95.812 191 8 0 1 191 482551114 482550924 5.160000e-80 309.0
42 TraesCS2D01G027500 chr5D 95.288 191 9 0 1 191 384367134 384367324 2.400000e-78 303.0
43 TraesCS2D01G027500 chr6D 96.335 191 7 0 1 191 464794419 464794609 1.110000e-81 315.0
44 TraesCS2D01G027500 chr1D 95.812 191 8 0 1 191 295936509 295936699 5.160000e-80 309.0
45 TraesCS2D01G027500 chrUn 85.479 303 33 7 4442 4738 276512468 276512171 6.670000e-79 305.0
46 TraesCS2D01G027500 chrUn 95.288 191 9 0 1 191 91452424 91452614 2.400000e-78 303.0
47 TraesCS2D01G027500 chrUn 82.353 323 24 9 4742 5039 276511425 276511111 3.170000e-62 250.0
48 TraesCS2D01G027500 chr4A 94.764 191 10 0 1 191 210194537 210194347 1.120000e-76 298.0
49 TraesCS2D01G027500 chr4A 72.321 336 79 14 1025 1353 741045679 741046007 5.650000e-15 93.5
50 TraesCS2D01G027500 chr3A 94.764 191 10 0 1 191 298150327 298150517 1.120000e-76 298.0
51 TraesCS2D01G027500 chr6B 92.157 51 2 1 199 247 153564673 153564723 2.650000e-08 71.3
52 TraesCS2D01G027500 chr7B 90.385 52 2 3 199 247 195649207 195649258 1.230000e-06 65.8
53 TraesCS2D01G027500 chr5A 86.207 58 7 1 199 256 690430222 690430166 1.590000e-05 62.1
54 TraesCS2D01G027500 chr7A 100.000 28 0 0 200 227 547280649 547280622 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G027500 chr2D 11422304 11427606 5302 True 9793.000000 9793 100.000000 1 5303 1 chr2D.!!$R1 5302
1 TraesCS2D01G027500 chr2D 2342223 2344038 1815 False 1543.000000 1543 82.023000 2051 3866 1 chr2D.!!$F1 1815
2 TraesCS2D01G027500 chr2D 5395977 5397769 1792 False 1439.000000 1439 81.201000 2068 3860 1 chr2D.!!$F2 1792
3 TraesCS2D01G027500 chr2D 5388270 5389806 1536 False 476.500000 773 83.526000 268 1809 2 chr2D.!!$F3 1541
4 TraesCS2D01G027500 chr2D 11459628 11460986 1358 True 330.500000 431 87.001500 4442 5039 2 chr2D.!!$R3 597
5 TraesCS2D01G027500 chr2B 17826480 17831340 4860 True 2204.000000 6224 91.257667 539 5303 3 chr2B.!!$R6 4764
6 TraesCS2D01G027500 chr2B 6156762 6159819 3057 True 1413.500000 2673 79.548500 817 3868 2 chr2B.!!$R5 3051
7 TraesCS2D01G027500 chr2B 6056241 6058907 2666 True 943.000000 1712 81.981000 1335 3861 2 chr2B.!!$R3 2526
8 TraesCS2D01G027500 chr2B 6039179 6040498 1319 True 878.000000 878 78.990000 561 1888 1 chr2B.!!$R1 1327
9 TraesCS2D01G027500 chr2B 6138900 6140160 1260 True 521.500000 854 78.129000 561 1973 2 chr2B.!!$R4 1412
10 TraesCS2D01G027500 chr2A 2334832 2336644 1812 False 1509.000000 1509 81.728000 2051 3864 1 chr2A.!!$F1 1813
11 TraesCS2D01G027500 chr2A 3974975 3977949 2974 False 1330.000000 1860 82.520500 814 3866 2 chr2A.!!$F2 3052
12 TraesCS2D01G027500 chr2A 4037213 4038853 1640 False 538.000000 891 84.214500 268 1888 2 chr2A.!!$F3 1620
13 TraesCS2D01G027500 chr2A 12033925 12035282 1357 True 277.500000 305 83.916000 4442 5039 2 chr2A.!!$R3 597
14 TraesCS2D01G027500 chr2A 12022290 12026607 4317 True 260.333333 462 91.755667 4443 5303 3 chr2A.!!$R2 860
15 TraesCS2D01G027500 chr3B 52890706 52892521 1815 True 1509.000000 1509 81.693000 2051 3866 1 chr3B.!!$R1 1815
16 TraesCS2D01G027500 chr4D 3714231 3716063 1832 False 1417.000000 1417 80.684000 2051 3887 1 chr4D.!!$F1 1836
17 TraesCS2D01G027500 chr7D 430992853 430993409 556 True 512.000000 512 83.904000 4743 5303 1 chr7D.!!$R1 560
18 TraesCS2D01G027500 chr4B 6039481 6040311 830 False 396.000000 396 75.508000 1186 2013 1 chr4B.!!$F1 827
19 TraesCS2D01G027500 chr5D 526714368 526714930 562 True 387.000000 387 80.789000 4777 5303 1 chr5D.!!$R2 526
20 TraesCS2D01G027500 chrUn 276511111 276512468 1357 True 277.500000 305 83.916000 4442 5039 2 chrUn.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.024619 GGCGATTTTGCGTCGTAGTC 59.975 55.000 0.00 0.00 40.98 2.59 F
181 182 0.024619 GCGATTTTGCGTCGTAGTCC 59.975 55.000 0.00 0.00 40.98 3.85 F
554 581 0.175760 ATGCTAACACGAGGCGACAT 59.824 50.000 0.00 0.00 0.00 3.06 F
704 756 0.559699 ACGGTATACCTACCTGGGCT 59.440 55.000 19.68 0.00 44.63 5.19 F
960 1033 0.969917 GGCACCACAATACATGGCCA 60.970 55.000 8.56 8.56 41.31 5.36 F
1932 2151 1.206371 CTTTCCGGGTGTATTCCTCGT 59.794 52.381 0.00 0.00 0.00 4.18 F
3468 3835 1.153349 GGGGTCACTCTTCCATCGC 60.153 63.158 0.00 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1654 0.548031 TGAGGTTGATCATGCCTCCC 59.452 55.000 29.06 16.10 46.05 4.30 R
1904 2123 1.530323 ACACCCGGAAAGTGTATTGC 58.470 50.000 12.60 0.00 46.37 3.56 R
2284 2647 2.554032 AGTGTAGCAAACTTGATGGCAC 59.446 45.455 0.00 8.29 35.55 5.01 R
3159 3525 1.002888 ACAAGAGACATCAGCACAGGG 59.997 52.381 0.00 0.00 0.00 4.45 R
3396 3763 6.375455 ACATCTTCTTCACCGCAAATATTTCT 59.625 34.615 0.00 0.00 0.00 2.52 R
3595 3962 0.259938 ACTGCCCTTCCATTGATCCC 59.740 55.000 0.00 0.00 0.00 3.85 R
4314 4682 2.934887 TGGCACGAATTCATCATCCAT 58.065 42.857 6.22 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.361610 CCAAGCGTGGGCCTTGAT 60.362 61.111 11.31 0.00 41.77 2.57
20 21 2.409870 CCAAGCGTGGGCCTTGATC 61.410 63.158 11.31 0.00 41.77 2.92
21 22 2.436646 AAGCGTGGGCCTTGATCG 60.437 61.111 4.53 3.28 41.24 3.69
24 25 3.197790 CGTGGGCCTTGATCGCTG 61.198 66.667 4.53 0.00 0.00 5.18
25 26 2.825836 GTGGGCCTTGATCGCTGG 60.826 66.667 4.53 0.00 0.00 4.85
26 27 3.329889 TGGGCCTTGATCGCTGGT 61.330 61.111 4.53 0.00 0.00 4.00
27 28 2.514824 GGGCCTTGATCGCTGGTC 60.515 66.667 0.84 0.00 0.00 4.02
28 29 2.586792 GGCCTTGATCGCTGGTCT 59.413 61.111 0.00 0.00 0.00 3.85
29 30 1.817099 GGCCTTGATCGCTGGTCTG 60.817 63.158 0.00 0.00 0.00 3.51
30 31 1.219124 GCCTTGATCGCTGGTCTGA 59.781 57.895 0.00 0.00 0.00 3.27
31 32 1.086634 GCCTTGATCGCTGGTCTGAC 61.087 60.000 0.00 0.00 0.00 3.51
32 33 0.803768 CCTTGATCGCTGGTCTGACG 60.804 60.000 1.07 0.00 0.00 4.35
33 34 0.109086 CTTGATCGCTGGTCTGACGT 60.109 55.000 1.07 0.00 0.00 4.34
34 35 0.109272 TTGATCGCTGGTCTGACGTC 60.109 55.000 9.11 9.11 0.00 4.34
35 36 1.583967 GATCGCTGGTCTGACGTCG 60.584 63.158 11.62 6.07 0.00 5.12
36 37 2.921538 GATCGCTGGTCTGACGTCGG 62.922 65.000 18.66 18.66 0.00 4.79
38 39 4.357947 GCTGGTCTGACGTCGGCA 62.358 66.667 19.89 11.61 33.35 5.69
39 40 2.430921 CTGGTCTGACGTCGGCAC 60.431 66.667 19.89 16.82 0.00 5.01
58 59 4.796231 GTGGCGGATGCGTCTCGT 62.796 66.667 13.64 0.00 44.10 4.18
59 60 4.492160 TGGCGGATGCGTCTCGTC 62.492 66.667 13.64 12.60 44.10 4.20
63 64 4.492160 GGATGCGTCTCGTCGGCA 62.492 66.667 5.77 0.00 0.00 5.69
64 65 2.951745 GATGCGTCTCGTCGGCAG 60.952 66.667 0.00 0.00 0.00 4.85
69 70 4.803426 GTCTCGTCGGCAGCTGGG 62.803 72.222 17.12 0.00 0.00 4.45
74 75 4.479993 GTCGGCAGCTGGGCAGAT 62.480 66.667 17.12 0.00 43.60 2.90
75 76 4.166888 TCGGCAGCTGGGCAGATC 62.167 66.667 17.12 0.00 43.60 2.75
91 92 2.841044 TCCGCCGGGATTCTACCC 60.841 66.667 1.90 0.00 45.92 3.69
100 101 2.197465 GGGATTCTACCCTTGTCTGGT 58.803 52.381 0.00 0.00 45.90 4.00
101 102 2.170817 GGGATTCTACCCTTGTCTGGTC 59.829 54.545 0.00 0.00 45.90 4.02
102 103 2.170817 GGATTCTACCCTTGTCTGGTCC 59.829 54.545 0.00 0.00 37.31 4.46
103 104 2.715763 TTCTACCCTTGTCTGGTCCT 57.284 50.000 0.00 0.00 37.31 3.85
104 105 2.715763 TCTACCCTTGTCTGGTCCTT 57.284 50.000 0.00 0.00 37.31 3.36
105 106 2.257207 TCTACCCTTGTCTGGTCCTTG 58.743 52.381 0.00 0.00 37.31 3.61
106 107 2.158219 TCTACCCTTGTCTGGTCCTTGA 60.158 50.000 0.00 0.00 37.31 3.02
107 108 0.765510 ACCCTTGTCTGGTCCTTGAC 59.234 55.000 8.15 8.15 0.00 3.18
108 109 0.764890 CCCTTGTCTGGTCCTTGACA 59.235 55.000 12.26 12.26 40.86 3.58
109 110 1.271054 CCCTTGTCTGGTCCTTGACAG 60.271 57.143 14.69 10.67 42.98 3.51
110 111 1.517242 CTTGTCTGGTCCTTGACAGC 58.483 55.000 14.69 0.00 42.98 4.40
111 112 0.249868 TTGTCTGGTCCTTGACAGCG 60.250 55.000 14.69 0.00 42.98 5.18
112 113 2.029844 GTCTGGTCCTTGACAGCGC 61.030 63.158 0.00 0.00 33.68 5.92
113 114 3.114616 CTGGTCCTTGACAGCGCG 61.115 66.667 0.00 0.00 33.68 6.86
114 115 4.680237 TGGTCCTTGACAGCGCGG 62.680 66.667 8.83 5.83 33.68 6.46
119 120 4.389576 CTTGACAGCGCGGGCAAC 62.390 66.667 25.38 16.45 43.41 4.17
120 121 4.927782 TTGACAGCGCGGGCAACT 62.928 61.111 25.38 7.77 43.41 3.16
129 130 3.646715 CGGGCAACTCCAGGGGAA 61.647 66.667 0.00 0.00 36.21 3.97
130 131 2.851045 GGGCAACTCCAGGGGAAA 59.149 61.111 0.00 0.00 36.21 3.13
131 132 1.606601 GGGCAACTCCAGGGGAAAC 60.607 63.158 0.00 0.00 36.21 2.78
132 133 1.606601 GGCAACTCCAGGGGAAACC 60.607 63.158 0.00 0.00 42.41 3.27
145 146 2.426842 GGAAACCCTGGATCTCCTTG 57.573 55.000 0.00 0.00 36.82 3.61
146 147 1.064389 GGAAACCCTGGATCTCCTTGG 60.064 57.143 0.00 0.93 36.82 3.61
148 149 0.121197 AACCCTGGATCTCCTTGGGA 59.879 55.000 24.68 0.00 46.20 4.37
149 150 0.348370 ACCCTGGATCTCCTTGGGAT 59.652 55.000 24.68 12.49 46.20 3.85
150 151 1.063183 CCCTGGATCTCCTTGGGATC 58.937 60.000 17.48 1.45 46.20 3.36
151 152 0.683973 CCTGGATCTCCTTGGGATCG 59.316 60.000 0.00 0.00 40.11 3.69
152 153 1.709578 CTGGATCTCCTTGGGATCGA 58.290 55.000 0.00 0.00 40.11 3.59
153 154 1.617850 CTGGATCTCCTTGGGATCGAG 59.382 57.143 2.23 2.23 40.11 4.04
154 155 0.320050 GGATCTCCTTGGGATCGAGC 59.680 60.000 0.00 0.00 40.11 5.03
155 156 0.038709 GATCTCCTTGGGATCGAGCG 60.039 60.000 0.00 0.00 31.79 5.03
156 157 0.468214 ATCTCCTTGGGATCGAGCGA 60.468 55.000 0.00 0.00 0.00 4.93
157 158 0.468214 TCTCCTTGGGATCGAGCGAT 60.468 55.000 4.89 4.89 37.59 4.58
158 159 0.319383 CTCCTTGGGATCGAGCGATG 60.319 60.000 10.42 0.00 34.60 3.84
159 160 0.755327 TCCTTGGGATCGAGCGATGA 60.755 55.000 10.42 0.00 34.60 2.92
160 161 0.319728 CCTTGGGATCGAGCGATGAT 59.680 55.000 10.42 0.00 34.60 2.45
161 162 1.426423 CTTGGGATCGAGCGATGATG 58.574 55.000 10.42 0.00 34.60 3.07
162 163 0.033920 TTGGGATCGAGCGATGATGG 59.966 55.000 10.42 0.00 34.60 3.51
163 164 1.739562 GGGATCGAGCGATGATGGC 60.740 63.158 10.42 0.00 34.60 4.40
164 165 2.091112 GGATCGAGCGATGATGGCG 61.091 63.158 10.42 0.00 34.60 5.69
165 166 1.081175 GATCGAGCGATGATGGCGA 60.081 57.895 10.42 0.00 34.60 5.54
166 167 0.457509 GATCGAGCGATGATGGCGAT 60.458 55.000 10.42 0.00 43.48 4.58
167 168 0.037882 ATCGAGCGATGATGGCGATT 60.038 50.000 4.37 0.00 38.40 3.34
168 169 0.249447 TCGAGCGATGATGGCGATTT 60.249 50.000 0.00 0.00 35.00 2.17
169 170 0.583438 CGAGCGATGATGGCGATTTT 59.417 50.000 0.00 0.00 35.00 1.82
170 171 1.658373 CGAGCGATGATGGCGATTTTG 60.658 52.381 0.00 0.00 35.00 2.44
171 172 0.029834 AGCGATGATGGCGATTTTGC 59.970 50.000 0.00 0.00 35.00 3.68
172 173 1.264141 GCGATGATGGCGATTTTGCG 61.264 55.000 0.00 0.00 35.06 4.85
173 174 0.027979 CGATGATGGCGATTTTGCGT 59.972 50.000 0.00 0.00 35.06 5.24
174 175 1.746760 GATGATGGCGATTTTGCGTC 58.253 50.000 0.00 0.00 36.22 5.19
175 176 0.027979 ATGATGGCGATTTTGCGTCG 59.972 50.000 0.00 0.00 39.05 5.12
176 177 1.295357 TGATGGCGATTTTGCGTCGT 61.295 50.000 0.00 0.00 39.05 4.34
177 178 0.648441 GATGGCGATTTTGCGTCGTA 59.352 50.000 0.00 0.00 39.05 3.43
178 179 0.650512 ATGGCGATTTTGCGTCGTAG 59.349 50.000 0.00 0.00 39.05 3.51
179 180 0.668096 TGGCGATTTTGCGTCGTAGT 60.668 50.000 0.00 0.00 39.05 2.73
180 181 0.024619 GGCGATTTTGCGTCGTAGTC 59.975 55.000 0.00 0.00 40.98 2.59
181 182 0.024619 GCGATTTTGCGTCGTAGTCC 59.975 55.000 0.00 0.00 40.98 3.85
182 183 0.643820 CGATTTTGCGTCGTAGTCCC 59.356 55.000 0.00 0.00 34.56 4.46
183 184 1.734707 CGATTTTGCGTCGTAGTCCCT 60.735 52.381 0.00 0.00 34.56 4.20
184 185 1.925185 GATTTTGCGTCGTAGTCCCTC 59.075 52.381 0.00 0.00 0.00 4.30
185 186 0.963962 TTTTGCGTCGTAGTCCCTCT 59.036 50.000 0.00 0.00 0.00 3.69
186 187 0.963962 TTTGCGTCGTAGTCCCTCTT 59.036 50.000 0.00 0.00 0.00 2.85
187 188 0.963962 TTGCGTCGTAGTCCCTCTTT 59.036 50.000 0.00 0.00 0.00 2.52
188 189 1.825090 TGCGTCGTAGTCCCTCTTTA 58.175 50.000 0.00 0.00 0.00 1.85
189 190 1.741706 TGCGTCGTAGTCCCTCTTTAG 59.258 52.381 0.00 0.00 0.00 1.85
190 191 1.065251 GCGTCGTAGTCCCTCTTTAGG 59.935 57.143 0.00 0.00 43.25 2.69
191 192 1.065251 CGTCGTAGTCCCTCTTTAGGC 59.935 57.143 0.00 0.00 42.14 3.93
192 193 1.408340 GTCGTAGTCCCTCTTTAGGCC 59.592 57.143 0.00 0.00 42.14 5.19
193 194 0.384669 CGTAGTCCCTCTTTAGGCCG 59.615 60.000 0.00 0.00 42.14 6.13
194 195 0.751452 GTAGTCCCTCTTTAGGCCGG 59.249 60.000 0.00 0.00 42.14 6.13
195 196 0.632835 TAGTCCCTCTTTAGGCCGGA 59.367 55.000 5.05 0.00 42.14 5.14
196 197 0.688087 AGTCCCTCTTTAGGCCGGAG 60.688 60.000 5.05 4.10 42.14 4.63
208 209 3.543537 CCGGAGGTCTCCCAGATG 58.456 66.667 11.08 0.00 46.96 2.90
209 210 2.801631 CCGGAGGTCTCCCAGATGC 61.802 68.421 11.08 0.00 46.96 3.91
210 211 2.060383 CGGAGGTCTCCCAGATGCA 61.060 63.158 11.08 0.00 46.96 3.96
211 212 1.828768 GGAGGTCTCCCAGATGCAG 59.171 63.158 5.73 0.00 43.94 4.41
212 213 0.689080 GGAGGTCTCCCAGATGCAGA 60.689 60.000 5.73 0.00 43.94 4.26
213 214 0.752054 GAGGTCTCCCAGATGCAGAG 59.248 60.000 0.00 0.00 0.00 3.35
214 215 0.690411 AGGTCTCCCAGATGCAGAGG 60.690 60.000 0.00 0.00 0.00 3.69
215 216 1.145819 GTCTCCCAGATGCAGAGGC 59.854 63.158 0.00 0.00 41.68 4.70
216 217 2.068821 TCTCCCAGATGCAGAGGCC 61.069 63.158 0.00 0.00 40.13 5.19
217 218 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
218 219 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
219 220 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
220 221 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
226 227 3.787001 CAGAGGCCGGGGGTCTTC 61.787 72.222 2.18 0.00 38.01 2.87
289 290 3.554129 CGGTCAACATGAGGTCACAGTTA 60.554 47.826 0.00 0.00 0.00 2.24
306 307 1.529152 TTAGGGACGAGCGCACTCAA 61.529 55.000 11.47 0.00 43.66 3.02
311 312 0.582005 GACGAGCGCACTCAAGTTTT 59.418 50.000 11.47 0.00 43.66 2.43
312 313 0.304705 ACGAGCGCACTCAAGTTTTG 59.695 50.000 11.47 0.00 43.66 2.44
315 317 2.410262 CGAGCGCACTCAAGTTTTGTAG 60.410 50.000 11.47 0.00 43.66 2.74
345 347 3.138304 CAAGCTTAGTGCACTTGTACCA 58.862 45.455 27.06 1.88 45.94 3.25
352 354 3.141398 AGTGCACTTGTACCAGTCATTG 58.859 45.455 15.25 0.00 0.00 2.82
353 355 1.879380 TGCACTTGTACCAGTCATTGC 59.121 47.619 0.00 0.00 0.00 3.56
372 375 3.197664 CCCCCTTGAAATGAGGAGC 57.802 57.895 0.00 0.00 36.33 4.70
373 376 0.332632 CCCCCTTGAAATGAGGAGCA 59.667 55.000 0.00 0.00 36.33 4.26
374 377 1.467920 CCCCTTGAAATGAGGAGCAC 58.532 55.000 0.00 0.00 36.33 4.40
375 378 1.089920 CCCTTGAAATGAGGAGCACG 58.910 55.000 0.00 0.00 36.33 5.34
376 379 1.089920 CCTTGAAATGAGGAGCACGG 58.910 55.000 0.00 0.00 36.33 4.94
377 380 1.339055 CCTTGAAATGAGGAGCACGGA 60.339 52.381 0.00 0.00 36.33 4.69
384 388 0.537188 TGAGGAGCACGGAAAGATCC 59.463 55.000 0.00 0.00 42.80 3.36
398 402 4.096532 GGAAAGATCCTTTCGTTGAATCCC 59.903 45.833 11.79 0.00 42.93 3.85
414 418 2.496899 TCCCATGCTCACCTTTTCTC 57.503 50.000 0.00 0.00 0.00 2.87
415 419 1.704628 TCCCATGCTCACCTTTTCTCA 59.295 47.619 0.00 0.00 0.00 3.27
417 421 1.815003 CCATGCTCACCTTTTCTCACC 59.185 52.381 0.00 0.00 0.00 4.02
418 422 2.507484 CATGCTCACCTTTTCTCACCA 58.493 47.619 0.00 0.00 0.00 4.17
419 423 2.260844 TGCTCACCTTTTCTCACCAG 57.739 50.000 0.00 0.00 0.00 4.00
420 424 1.490490 TGCTCACCTTTTCTCACCAGT 59.510 47.619 0.00 0.00 0.00 4.00
421 425 2.147150 GCTCACCTTTTCTCACCAGTC 58.853 52.381 0.00 0.00 0.00 3.51
422 426 2.485479 GCTCACCTTTTCTCACCAGTCA 60.485 50.000 0.00 0.00 0.00 3.41
423 427 3.808728 CTCACCTTTTCTCACCAGTCAA 58.191 45.455 0.00 0.00 0.00 3.18
424 428 4.392940 CTCACCTTTTCTCACCAGTCAAT 58.607 43.478 0.00 0.00 0.00 2.57
428 445 3.187227 CCTTTTCTCACCAGTCAATGACG 59.813 47.826 7.83 3.22 37.67 4.35
436 453 2.104111 ACCAGTCAATGACGACAAAGGA 59.896 45.455 7.83 0.00 38.43 3.36
450 477 4.348656 GACAAAGGAAAAGGAAACACGTC 58.651 43.478 0.00 0.00 0.00 4.34
452 479 2.721425 AGGAAAAGGAAACACGTCCA 57.279 45.000 0.00 0.00 40.48 4.02
462 489 1.314730 AACACGTCCATCGCCTTTTT 58.685 45.000 0.00 0.00 44.19 1.94
498 525 5.717119 ATATAAACTCCCCAAAGCTCACT 57.283 39.130 0.00 0.00 0.00 3.41
499 526 1.986882 AAACTCCCCAAAGCTCACTG 58.013 50.000 0.00 0.00 0.00 3.66
500 527 0.538287 AACTCCCCAAAGCTCACTGC 60.538 55.000 0.00 0.00 43.29 4.40
530 557 1.172180 TTTGCAGACCTTTGCCTCGG 61.172 55.000 0.00 0.00 43.43 4.63
531 558 2.032681 GCAGACCTTTGCCTCGGT 59.967 61.111 0.00 0.00 38.13 4.69
532 559 1.600916 GCAGACCTTTGCCTCGGTT 60.601 57.895 0.00 0.00 38.13 4.44
533 560 1.578206 GCAGACCTTTGCCTCGGTTC 61.578 60.000 0.00 0.00 38.13 3.62
534 561 0.955919 CAGACCTTTGCCTCGGTTCC 60.956 60.000 0.00 0.00 32.62 3.62
535 562 1.072505 GACCTTTGCCTCGGTTCCA 59.927 57.895 0.00 0.00 32.62 3.53
536 563 0.322546 GACCTTTGCCTCGGTTCCAT 60.323 55.000 0.00 0.00 32.62 3.41
537 564 0.609131 ACCTTTGCCTCGGTTCCATG 60.609 55.000 0.00 0.00 0.00 3.66
538 565 1.508088 CTTTGCCTCGGTTCCATGC 59.492 57.895 0.00 0.00 0.00 4.06
539 566 0.962356 CTTTGCCTCGGTTCCATGCT 60.962 55.000 0.00 0.00 0.00 3.79
542 569 0.392461 TGCCTCGGTTCCATGCTAAC 60.392 55.000 0.00 0.00 0.00 2.34
543 570 0.392461 GCCTCGGTTCCATGCTAACA 60.392 55.000 10.28 0.00 0.00 2.41
544 571 1.369625 CCTCGGTTCCATGCTAACAC 58.630 55.000 10.28 1.58 0.00 3.32
545 572 0.999406 CTCGGTTCCATGCTAACACG 59.001 55.000 10.28 10.55 0.00 4.49
547 574 0.999406 CGGTTCCATGCTAACACGAG 59.001 55.000 10.28 0.00 0.00 4.18
548 575 1.369625 GGTTCCATGCTAACACGAGG 58.630 55.000 10.28 0.00 0.00 4.63
549 576 0.727398 GTTCCATGCTAACACGAGGC 59.273 55.000 0.00 0.00 0.00 4.70
550 577 0.739462 TTCCATGCTAACACGAGGCG 60.739 55.000 0.00 0.00 0.00 5.52
551 578 1.153647 CCATGCTAACACGAGGCGA 60.154 57.895 0.00 0.00 0.00 5.54
552 579 1.421410 CCATGCTAACACGAGGCGAC 61.421 60.000 0.00 0.00 0.00 5.19
553 580 0.735978 CATGCTAACACGAGGCGACA 60.736 55.000 0.00 0.00 0.00 4.35
554 581 0.175760 ATGCTAACACGAGGCGACAT 59.824 50.000 0.00 0.00 0.00 3.06
556 583 1.202817 TGCTAACACGAGGCGACATAA 59.797 47.619 0.00 0.00 0.00 1.90
573 615 9.562583 GGCGACATAAATTATTTACAAAGAACA 57.437 29.630 0.00 0.00 0.00 3.18
624 670 1.736586 CAGGCTAGAACGAGGCGAT 59.263 57.895 0.00 0.00 46.31 4.58
631 680 5.651139 AGGCTAGAACGAGGCGATATTATTA 59.349 40.000 0.00 0.00 46.31 0.98
632 681 5.742926 GGCTAGAACGAGGCGATATTATTAC 59.257 44.000 0.00 0.00 31.65 1.89
633 682 6.320171 GCTAGAACGAGGCGATATTATTACA 58.680 40.000 0.00 0.00 0.00 2.41
634 683 6.973474 GCTAGAACGAGGCGATATTATTACAT 59.027 38.462 0.00 0.00 0.00 2.29
635 684 8.127327 GCTAGAACGAGGCGATATTATTACATA 58.873 37.037 0.00 0.00 0.00 2.29
638 687 9.871238 AGAACGAGGCGATATTATTACATATTT 57.129 29.630 0.00 0.00 0.00 1.40
677 729 2.203972 TTTCCAGTCGTACGCGGAGG 62.204 60.000 12.47 8.23 38.89 4.30
699 751 4.443881 GGCAAATGAACGGTATACCTACCT 60.444 45.833 19.68 1.23 44.63 3.08
700 752 4.510340 GCAAATGAACGGTATACCTACCTG 59.490 45.833 19.68 6.29 44.63 4.00
702 754 2.669781 TGAACGGTATACCTACCTGGG 58.330 52.381 19.68 4.86 44.63 4.45
703 755 1.342496 GAACGGTATACCTACCTGGGC 59.658 57.143 19.68 0.00 44.63 5.36
704 756 0.559699 ACGGTATACCTACCTGGGCT 59.440 55.000 19.68 0.00 44.63 5.19
706 758 1.479942 CGGTATACCTACCTGGGCTGA 60.480 57.143 19.68 0.00 44.63 4.26
707 759 2.249139 GGTATACCTACCTGGGCTGAG 58.751 57.143 15.09 0.00 43.62 3.35
708 760 2.158355 GGTATACCTACCTGGGCTGAGA 60.158 54.545 15.09 0.00 43.62 3.27
709 761 2.390225 ATACCTACCTGGGCTGAGAG 57.610 55.000 0.00 0.00 41.11 3.20
731 785 8.108551 AGAGTTACCAACTTAGCGTATATAGG 57.891 38.462 0.00 0.00 43.03 2.57
733 787 7.655490 AGTTACCAACTTAGCGTATATAGGTG 58.345 38.462 4.47 0.00 39.04 4.00
734 788 7.503566 AGTTACCAACTTAGCGTATATAGGTGA 59.496 37.037 4.47 0.00 39.04 4.02
739 802 6.704289 ACTTAGCGTATATAGGTGAACACA 57.296 37.500 7.25 0.00 0.00 3.72
740 803 6.501781 ACTTAGCGTATATAGGTGAACACAC 58.498 40.000 7.25 0.00 0.00 3.82
765 829 1.281867 CCAAGATCCTACCACAGCCAA 59.718 52.381 0.00 0.00 0.00 4.52
766 830 2.636830 CAAGATCCTACCACAGCCAAG 58.363 52.381 0.00 0.00 0.00 3.61
769 833 1.559682 GATCCTACCACAGCCAAGGAA 59.440 52.381 0.00 0.00 41.33 3.36
815 879 1.554160 ACCCTTCATCTCACTCTGCAG 59.446 52.381 7.63 7.63 0.00 4.41
822 886 1.543607 TCTCACTCTGCAGTCTCCTG 58.456 55.000 14.67 3.33 41.91 3.86
907 977 1.363744 CTGGAAAGCCACGCTAGAAG 58.636 55.000 0.00 0.00 39.92 2.85
942 1012 3.489513 GGATCGTGGGGAAGGGGG 61.490 72.222 0.00 0.00 0.00 5.40
960 1033 0.969917 GGCACCACAATACATGGCCA 60.970 55.000 8.56 8.56 41.31 5.36
1001 1074 2.123428 GCGGCAAGGATGGAGCAAT 61.123 57.895 0.00 0.00 0.00 3.56
1301 1377 3.378427 CCAAGCCAAATAGGACAACTAGC 59.622 47.826 0.00 0.00 41.22 3.42
1355 1431 1.550130 TTGTCTGGTCCCATCCCGAC 61.550 60.000 0.00 0.00 40.48 4.79
1390 1466 2.481289 AAAGAAGCTGCTCAGGGTAC 57.519 50.000 1.00 0.00 0.00 3.34
1535 1611 5.163088 ACCTTGTGAATCTAAAGGAGTTGGT 60.163 40.000 17.38 0.00 42.65 3.67
1578 1654 1.680860 GGTTTCATCCCCGGTACCTTG 60.681 57.143 10.90 0.44 0.00 3.61
1725 1873 6.689561 TGATTCCATCCCTAGTACCTTCTTA 58.310 40.000 0.00 0.00 0.00 2.10
1812 1960 7.259088 AGAACTAGGTTACATGGTGAATCTT 57.741 36.000 0.00 0.00 0.00 2.40
1823 1971 6.223120 ACATGGTGAATCTTAAAAAGTTGGC 58.777 36.000 0.00 0.00 0.00 4.52
1904 2123 5.072329 ACCTCACTGAATTGTATCTATGGGG 59.928 44.000 0.00 0.00 33.91 4.96
1905 2124 4.973168 TCACTGAATTGTATCTATGGGGC 58.027 43.478 0.00 0.00 0.00 5.80
1932 2151 1.206371 CTTTCCGGGTGTATTCCTCGT 59.794 52.381 0.00 0.00 0.00 4.18
1961 2180 6.301169 AGGTTACCTAGTGAATCTTGAAGG 57.699 41.667 0.15 0.00 28.47 3.46
1975 2338 5.165961 TCTTGAAGGGTTGGATCTTAGTG 57.834 43.478 0.00 0.00 0.00 2.74
1976 2339 4.597507 TCTTGAAGGGTTGGATCTTAGTGT 59.402 41.667 0.00 0.00 0.00 3.55
1977 2340 5.783360 TCTTGAAGGGTTGGATCTTAGTGTA 59.217 40.000 0.00 0.00 0.00 2.90
2019 2382 4.864704 TCCCAATAACTTTGGCAGTTTC 57.135 40.909 0.00 0.00 43.89 2.78
2035 2398 5.816258 GGCAGTTTCAGTAACCTAACTATCC 59.184 44.000 0.00 0.00 37.46 2.59
2039 2402 6.729569 AGTTTCAGTAACCTAACTATCCTGGT 59.270 38.462 0.00 0.00 37.46 4.00
2246 2609 1.449956 GCTCTGGAGGCAAGCTCAG 60.450 63.158 0.00 0.00 33.23 3.35
2682 3045 8.852135 GGAGCACTATCTAGTCTACAGTTATTT 58.148 37.037 0.00 0.00 33.46 1.40
3159 3525 3.662247 ACACTTGTACTAGCAGTGGTC 57.338 47.619 0.00 0.00 35.07 4.02
3396 3763 1.289160 AGGCTAGGCTTCCAACATCA 58.711 50.000 14.10 0.00 0.00 3.07
3446 3813 4.582459 GTTATTGAAGATGAGAGTTGCGC 58.418 43.478 0.00 0.00 0.00 6.09
3468 3835 1.153349 GGGGTCACTCTTCCATCGC 60.153 63.158 0.00 0.00 0.00 4.58
3513 3880 1.257936 CGGCATCGGAACATCGTAAAG 59.742 52.381 0.00 0.00 0.00 1.85
3595 3962 1.239968 GGACTTGGCAGAAGCACTGG 61.240 60.000 11.72 0.01 45.82 4.00
3917 4285 2.869233 AAATGCACATTATGGGACGC 57.131 45.000 0.00 0.00 0.00 5.19
3977 4345 7.414429 GCTTGCATATACAGAAAATGTGACAGA 60.414 37.037 0.00 0.00 43.80 3.41
4029 4397 3.114606 TGTCATGGAGCTCTTTATGGGA 58.885 45.455 14.64 4.36 0.00 4.37
4057 4425 0.179034 AGGCGAATTGCTCTCATCCC 60.179 55.000 0.00 0.00 45.43 3.85
4085 4453 4.640201 TGAGGCCAACAAGAATAATACTGC 59.360 41.667 5.01 0.00 0.00 4.40
4125 4493 2.283894 TCAAGGCTCGAGCTCCCA 60.284 61.111 34.46 15.42 41.70 4.37
4140 4508 2.753966 CCCAGATGCTGAAACCGCG 61.754 63.158 0.00 0.00 32.44 6.46
4163 4531 4.999950 GGGAGAAATATACCACATGCTCAG 59.000 45.833 0.00 0.00 0.00 3.35
4212 4580 0.034756 CATCACGGAGACCCACAACA 59.965 55.000 0.00 0.00 0.00 3.33
4227 4595 0.776451 CAACACGACGTGCTAGTGAC 59.224 55.000 27.11 0.00 39.04 3.67
4231 4599 1.226686 ACGACGTGCTAGTGACGAGT 61.227 55.000 19.32 15.43 39.21 4.18
4242 4610 4.273969 GCTAGTGACGAGTTATCTGCTAGT 59.726 45.833 0.00 0.00 31.27 2.57
4245 4613 6.366315 AGTGACGAGTTATCTGCTAGTAAG 57.634 41.667 0.00 0.00 0.00 2.34
4256 4624 5.420725 TCTGCTAGTAAGGCATTTGAAGA 57.579 39.130 0.00 0.00 39.07 2.87
4314 4682 0.888619 CTCACTAGTTCTCGTGGCCA 59.111 55.000 0.00 0.00 0.00 5.36
4355 4723 6.542370 TGCCATATAGTTTCTTCTTTGCTACC 59.458 38.462 0.00 0.00 0.00 3.18
4356 4724 6.768381 GCCATATAGTTTCTTCTTTGCTACCT 59.232 38.462 0.00 0.00 0.00 3.08
4357 4725 7.931948 GCCATATAGTTTCTTCTTTGCTACCTA 59.068 37.037 0.00 0.00 0.00 3.08
4358 4726 9.262358 CCATATAGTTTCTTCTTTGCTACCTAC 57.738 37.037 0.00 0.00 0.00 3.18
4735 5136 6.522625 TTTGTTGTGAACATTCAGGAAAGA 57.477 33.333 0.00 0.00 41.79 2.52
4866 8861 8.567948 GCAGTACAAGTGCCATTATATTGTATT 58.432 33.333 0.00 0.00 38.58 1.89
4909 8958 9.739276 CAGGGGTGATTATATTGTATACATGTT 57.261 33.333 2.30 0.00 0.00 2.71
4939 8988 3.725754 CACTAGTTTGGTGCCCTGT 57.274 52.632 0.00 0.00 0.00 4.00
5049 9107 1.148273 TTGATCTATGCACCGGGGC 59.852 57.895 25.59 25.59 0.00 5.80
5086 9144 3.181510 CCGAATTTCTTTTCGCCGATTCT 60.182 43.478 0.00 0.00 45.42 2.40
5129 9192 6.916360 TTCCTGTAAAATTCTTGATTGCCT 57.084 33.333 0.00 0.00 0.00 4.75
5211 9305 1.066358 TGACAGAGCTGCTTCTCCATG 60.066 52.381 2.53 0.00 33.66 3.66
5260 9354 3.270962 GGCGAAGACGATCCTAGTTAG 57.729 52.381 0.00 0.00 42.66 2.34
5261 9355 2.605097 GGCGAAGACGATCCTAGTTAGC 60.605 54.545 0.00 0.00 42.66 3.09
5262 9356 2.291190 GCGAAGACGATCCTAGTTAGCT 59.709 50.000 0.00 0.00 42.66 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.361610 ATCAAGGCCCACGCTTGG 60.362 61.111 1.29 1.29 43.50 3.61
3 4 2.753966 CGATCAAGGCCCACGCTTG 61.754 63.158 0.00 0.00 34.44 4.01
4 5 2.436646 CGATCAAGGCCCACGCTT 60.437 61.111 0.00 0.00 34.44 4.68
7 8 3.197790 CAGCGATCAAGGCCCACG 61.198 66.667 0.00 0.00 0.00 4.94
8 9 2.825836 CCAGCGATCAAGGCCCAC 60.826 66.667 0.00 0.00 0.00 4.61
9 10 3.329542 GACCAGCGATCAAGGCCCA 62.330 63.158 0.00 0.00 0.00 5.36
11 12 1.817099 CAGACCAGCGATCAAGGCC 60.817 63.158 0.00 0.00 0.00 5.19
13 14 0.803768 CGTCAGACCAGCGATCAAGG 60.804 60.000 0.00 0.00 0.00 3.61
14 15 0.109086 ACGTCAGACCAGCGATCAAG 60.109 55.000 0.00 0.00 0.00 3.02
15 16 0.109272 GACGTCAGACCAGCGATCAA 60.109 55.000 11.55 0.00 0.00 2.57
17 18 1.583967 CGACGTCAGACCAGCGATC 60.584 63.158 17.16 0.00 0.00 3.69
18 19 2.485582 CGACGTCAGACCAGCGAT 59.514 61.111 17.16 0.00 0.00 4.58
19 20 3.733960 CCGACGTCAGACCAGCGA 61.734 66.667 17.16 0.00 0.00 4.93
21 22 4.357947 TGCCGACGTCAGACCAGC 62.358 66.667 17.16 8.36 0.00 4.85
22 23 2.430921 GTGCCGACGTCAGACCAG 60.431 66.667 17.16 0.00 0.00 4.00
23 24 4.337060 CGTGCCGACGTCAGACCA 62.337 66.667 17.16 3.40 40.91 4.02
25 26 4.338539 ACCGTGCCGACGTCAGAC 62.339 66.667 17.16 7.41 44.54 3.51
26 27 4.337060 CACCGTGCCGACGTCAGA 62.337 66.667 17.16 0.00 44.54 3.27
41 42 4.796231 ACGAGACGCATCCGCCAC 62.796 66.667 0.00 0.00 38.22 5.01
42 43 4.492160 GACGAGACGCATCCGCCA 62.492 66.667 0.00 0.00 38.22 5.69
46 47 4.492160 TGCCGACGAGACGCATCC 62.492 66.667 0.00 0.00 0.00 3.51
47 48 2.951745 CTGCCGACGAGACGCATC 60.952 66.667 0.00 0.00 0.00 3.91
52 53 4.803426 CCCAGCTGCCGACGAGAC 62.803 72.222 8.66 0.00 0.00 3.36
57 58 4.479993 ATCTGCCCAGCTGCCGAC 62.480 66.667 8.66 0.00 0.00 4.79
58 59 4.166888 GATCTGCCCAGCTGCCGA 62.167 66.667 8.66 0.00 0.00 5.54
74 75 2.841044 GGGTAGAATCCCGGCGGA 60.841 66.667 30.79 14.42 44.33 5.54
81 82 2.170817 GGACCAGACAAGGGTAGAATCC 59.829 54.545 0.00 0.00 39.19 3.01
82 83 3.108376 AGGACCAGACAAGGGTAGAATC 58.892 50.000 0.00 0.00 39.19 2.52
83 84 3.207044 AGGACCAGACAAGGGTAGAAT 57.793 47.619 0.00 0.00 39.19 2.40
84 85 2.637872 CAAGGACCAGACAAGGGTAGAA 59.362 50.000 0.00 0.00 39.19 2.10
85 86 2.158219 TCAAGGACCAGACAAGGGTAGA 60.158 50.000 0.00 0.00 39.19 2.59
86 87 2.028020 GTCAAGGACCAGACAAGGGTAG 60.028 54.545 11.10 0.00 39.19 3.18
87 88 1.975680 GTCAAGGACCAGACAAGGGTA 59.024 52.381 11.10 0.00 39.19 3.69
88 89 0.765510 GTCAAGGACCAGACAAGGGT 59.234 55.000 11.10 0.00 42.61 4.34
89 90 0.764890 TGTCAAGGACCAGACAAGGG 59.235 55.000 15.12 0.00 41.42 3.95
90 91 1.879796 GCTGTCAAGGACCAGACAAGG 60.880 57.143 17.31 10.16 43.48 3.61
91 92 1.517242 GCTGTCAAGGACCAGACAAG 58.483 55.000 17.31 13.16 43.48 3.16
92 93 0.249868 CGCTGTCAAGGACCAGACAA 60.250 55.000 17.31 5.58 43.48 3.18
93 94 1.367471 CGCTGTCAAGGACCAGACA 59.633 57.895 16.18 16.18 42.06 3.41
94 95 2.029844 GCGCTGTCAAGGACCAGAC 61.030 63.158 0.00 9.50 35.37 3.51
95 96 2.343758 GCGCTGTCAAGGACCAGA 59.656 61.111 0.00 0.00 0.00 3.86
96 97 3.114616 CGCGCTGTCAAGGACCAG 61.115 66.667 5.56 0.00 0.00 4.00
97 98 4.680237 CCGCGCTGTCAAGGACCA 62.680 66.667 5.56 0.00 0.00 4.02
102 103 4.389576 GTTGCCCGCGCTGTCAAG 62.390 66.667 5.56 0.00 35.36 3.02
103 104 4.927782 AGTTGCCCGCGCTGTCAA 62.928 61.111 5.56 0.00 35.36 3.18
112 113 3.204467 TTTCCCCTGGAGTTGCCCG 62.204 63.158 0.00 0.00 34.97 6.13
113 114 1.606601 GTTTCCCCTGGAGTTGCCC 60.607 63.158 0.00 0.00 34.97 5.36
114 115 1.606601 GGTTTCCCCTGGAGTTGCC 60.607 63.158 0.00 0.00 31.21 4.52
115 116 4.097218 GGTTTCCCCTGGAGTTGC 57.903 61.111 0.00 0.00 31.21 4.17
125 126 1.064389 CAAGGAGATCCAGGGTTTCCC 60.064 57.143 5.60 0.00 45.90 3.97
126 127 1.064389 CCAAGGAGATCCAGGGTTTCC 60.064 57.143 0.39 0.39 38.89 3.13
127 128 1.064389 CCCAAGGAGATCCAGGGTTTC 60.064 57.143 17.15 0.00 44.15 2.78
128 129 1.002857 CCCAAGGAGATCCAGGGTTT 58.997 55.000 17.15 0.00 44.15 3.27
129 130 2.715295 CCCAAGGAGATCCAGGGTT 58.285 57.895 17.15 0.00 44.15 4.11
130 131 4.508065 CCCAAGGAGATCCAGGGT 57.492 61.111 17.15 0.00 44.15 4.34
132 133 0.683973 CGATCCCAAGGAGATCCAGG 59.316 60.000 0.92 2.69 37.45 4.45
133 134 1.617850 CTCGATCCCAAGGAGATCCAG 59.382 57.143 0.92 5.46 37.45 3.86
134 135 1.709578 CTCGATCCCAAGGAGATCCA 58.290 55.000 0.92 0.78 37.45 3.41
135 136 0.320050 GCTCGATCCCAAGGAGATCC 59.680 60.000 10.18 0.00 37.45 3.36
136 137 0.038709 CGCTCGATCCCAAGGAGATC 60.039 60.000 0.00 7.23 34.05 2.75
137 138 0.468214 TCGCTCGATCCCAAGGAGAT 60.468 55.000 0.00 0.00 34.05 2.75
138 139 0.468214 ATCGCTCGATCCCAAGGAGA 60.468 55.000 0.00 0.00 34.05 3.71
139 140 0.319383 CATCGCTCGATCCCAAGGAG 60.319 60.000 1.30 0.00 34.05 3.69
140 141 0.755327 TCATCGCTCGATCCCAAGGA 60.755 55.000 1.30 0.00 35.55 3.36
141 142 0.319728 ATCATCGCTCGATCCCAAGG 59.680 55.000 1.30 0.00 31.62 3.61
142 143 1.426423 CATCATCGCTCGATCCCAAG 58.574 55.000 1.30 0.00 31.62 3.61
143 144 0.033920 CCATCATCGCTCGATCCCAA 59.966 55.000 1.30 0.00 31.62 4.12
144 145 1.667722 CCATCATCGCTCGATCCCA 59.332 57.895 1.30 0.00 31.62 4.37
145 146 1.739562 GCCATCATCGCTCGATCCC 60.740 63.158 1.30 0.00 31.62 3.85
146 147 2.091112 CGCCATCATCGCTCGATCC 61.091 63.158 1.30 0.00 31.62 3.36
147 148 0.457509 ATCGCCATCATCGCTCGATC 60.458 55.000 1.30 0.00 35.28 3.69
148 149 0.037882 AATCGCCATCATCGCTCGAT 60.038 50.000 0.00 0.00 41.00 3.59
149 150 0.249447 AAATCGCCATCATCGCTCGA 60.249 50.000 0.00 0.00 0.00 4.04
150 151 0.583438 AAAATCGCCATCATCGCTCG 59.417 50.000 0.00 0.00 0.00 5.03
151 152 1.923316 GCAAAATCGCCATCATCGCTC 60.923 52.381 0.00 0.00 0.00 5.03
152 153 0.029834 GCAAAATCGCCATCATCGCT 59.970 50.000 0.00 0.00 0.00 4.93
153 154 1.264141 CGCAAAATCGCCATCATCGC 61.264 55.000 0.00 0.00 0.00 4.58
154 155 0.027979 ACGCAAAATCGCCATCATCG 59.972 50.000 0.00 0.00 0.00 3.84
155 156 1.746760 GACGCAAAATCGCCATCATC 58.253 50.000 0.00 0.00 0.00 2.92
156 157 0.027979 CGACGCAAAATCGCCATCAT 59.972 50.000 0.00 0.00 31.96 2.45
157 158 1.295357 ACGACGCAAAATCGCCATCA 61.295 50.000 0.00 0.00 43.46 3.07
158 159 0.648441 TACGACGCAAAATCGCCATC 59.352 50.000 0.00 0.00 43.46 3.51
159 160 0.650512 CTACGACGCAAAATCGCCAT 59.349 50.000 0.00 0.00 43.46 4.40
160 161 0.668096 ACTACGACGCAAAATCGCCA 60.668 50.000 0.00 0.00 43.46 5.69
161 162 0.024619 GACTACGACGCAAAATCGCC 59.975 55.000 0.00 0.00 43.46 5.54
162 163 0.024619 GGACTACGACGCAAAATCGC 59.975 55.000 0.00 0.00 43.46 4.58
163 164 0.643820 GGGACTACGACGCAAAATCG 59.356 55.000 0.00 0.00 45.17 3.34
164 165 1.925185 GAGGGACTACGACGCAAAATC 59.075 52.381 0.00 0.00 41.55 2.17
165 166 1.549170 AGAGGGACTACGACGCAAAAT 59.451 47.619 0.00 0.00 41.55 1.82
166 167 0.963962 AGAGGGACTACGACGCAAAA 59.036 50.000 0.00 0.00 41.55 2.44
167 168 0.963962 AAGAGGGACTACGACGCAAA 59.036 50.000 0.00 0.00 41.55 3.68
168 169 0.963962 AAAGAGGGACTACGACGCAA 59.036 50.000 0.00 0.00 41.55 4.85
169 170 1.741706 CTAAAGAGGGACTACGACGCA 59.258 52.381 0.00 0.00 41.55 5.24
170 171 1.065251 CCTAAAGAGGGACTACGACGC 59.935 57.143 0.00 0.00 41.55 5.19
171 172 1.065251 GCCTAAAGAGGGACTACGACG 59.935 57.143 0.00 0.00 43.97 5.12
172 173 1.408340 GGCCTAAAGAGGGACTACGAC 59.592 57.143 0.00 0.00 43.97 4.34
173 174 1.772836 GGCCTAAAGAGGGACTACGA 58.227 55.000 0.00 0.00 43.97 3.43
174 175 0.384669 CGGCCTAAAGAGGGACTACG 59.615 60.000 0.00 0.00 43.97 3.51
175 176 0.751452 CCGGCCTAAAGAGGGACTAC 59.249 60.000 0.00 0.00 43.97 2.73
176 177 0.632835 TCCGGCCTAAAGAGGGACTA 59.367 55.000 0.00 0.00 43.97 2.59
177 178 0.688087 CTCCGGCCTAAAGAGGGACT 60.688 60.000 0.00 0.00 43.97 3.85
178 179 1.687297 CCTCCGGCCTAAAGAGGGAC 61.687 65.000 16.35 0.00 43.97 4.46
179 180 1.382695 CCTCCGGCCTAAAGAGGGA 60.383 63.158 16.35 6.60 43.97 4.20
180 181 3.231298 CCTCCGGCCTAAAGAGGG 58.769 66.667 16.35 2.60 43.97 4.30
182 183 0.747852 GAGACCTCCGGCCTAAAGAG 59.252 60.000 0.00 1.34 0.00 2.85
183 184 0.686769 GGAGACCTCCGGCCTAAAGA 60.687 60.000 0.00 0.00 40.36 2.52
184 185 1.823976 GGAGACCTCCGGCCTAAAG 59.176 63.158 0.00 0.00 40.36 1.85
185 186 4.045469 GGAGACCTCCGGCCTAAA 57.955 61.111 0.00 0.00 40.36 1.85
196 197 2.322638 GCCTCTGCATCTGGGAGACC 62.323 65.000 1.66 0.00 44.94 3.85
197 198 1.145819 GCCTCTGCATCTGGGAGAC 59.854 63.158 1.66 0.00 39.28 3.36
198 199 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
199 200 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
200 201 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
201 202 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
202 203 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
203 204 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
209 210 3.787001 GAAGACCCCCGGCCTCTG 61.787 72.222 0.00 0.00 0.00 3.35
253 254 3.027170 GACCGCACCGCACTTGATG 62.027 63.158 0.00 0.00 0.00 3.07
254 255 2.742372 GACCGCACCGCACTTGAT 60.742 61.111 0.00 0.00 0.00 2.57
255 256 3.741830 TTGACCGCACCGCACTTGA 62.742 57.895 0.00 0.00 0.00 3.02
256 257 3.276091 TTGACCGCACCGCACTTG 61.276 61.111 0.00 0.00 0.00 3.16
257 258 3.276846 GTTGACCGCACCGCACTT 61.277 61.111 0.00 0.00 0.00 3.16
258 259 3.825160 ATGTTGACCGCACCGCACT 62.825 57.895 0.00 0.00 0.00 4.40
259 260 3.353836 ATGTTGACCGCACCGCAC 61.354 61.111 0.00 0.00 0.00 5.34
260 261 3.353029 CATGTTGACCGCACCGCA 61.353 61.111 0.00 0.00 0.00 5.69
261 262 3.027170 CTCATGTTGACCGCACCGC 62.027 63.158 0.00 0.00 0.00 5.68
262 263 2.390599 CCTCATGTTGACCGCACCG 61.391 63.158 0.00 0.00 0.00 4.94
263 264 1.298859 GACCTCATGTTGACCGCACC 61.299 60.000 0.00 0.00 0.00 5.01
264 265 0.602638 TGACCTCATGTTGACCGCAC 60.603 55.000 0.00 0.00 0.00 5.34
265 266 0.602638 GTGACCTCATGTTGACCGCA 60.603 55.000 0.00 0.00 0.00 5.69
266 267 0.602638 TGTGACCTCATGTTGACCGC 60.603 55.000 0.00 0.00 0.00 5.68
289 290 3.288308 CTTGAGTGCGCTCGTCCCT 62.288 63.158 21.66 0.00 44.48 4.20
306 307 5.625150 AGCTTGAACCATCTCTACAAAACT 58.375 37.500 0.00 0.00 0.00 2.66
311 312 5.724328 CACTAAGCTTGAACCATCTCTACA 58.276 41.667 9.86 0.00 0.00 2.74
312 313 4.568760 GCACTAAGCTTGAACCATCTCTAC 59.431 45.833 9.86 0.00 41.15 2.59
315 317 3.126000 GTGCACTAAGCTTGAACCATCTC 59.874 47.826 10.32 0.00 45.94 2.75
365 368 0.537188 GGATCTTTCCGTGCTCCTCA 59.463 55.000 0.00 0.00 30.72 3.86
366 369 3.371087 GGATCTTTCCGTGCTCCTC 57.629 57.895 0.00 0.00 30.72 3.71
375 378 4.096532 GGGATTCAACGAAAGGATCTTTCC 59.903 45.833 12.91 0.16 42.96 3.13
376 379 4.700213 TGGGATTCAACGAAAGGATCTTTC 59.300 41.667 9.60 9.60 0.00 2.62
377 380 4.662278 TGGGATTCAACGAAAGGATCTTT 58.338 39.130 0.00 0.00 0.00 2.52
384 388 2.749076 TGAGCATGGGATTCAACGAAAG 59.251 45.455 0.00 0.00 0.00 2.62
398 402 2.486982 CTGGTGAGAAAAGGTGAGCATG 59.513 50.000 0.00 0.00 0.00 4.06
414 418 2.224079 CCTTTGTCGTCATTGACTGGTG 59.776 50.000 14.54 0.00 39.64 4.17
415 419 2.104111 TCCTTTGTCGTCATTGACTGGT 59.896 45.455 14.54 0.00 39.64 4.00
417 421 4.811555 TTTCCTTTGTCGTCATTGACTG 57.188 40.909 14.54 8.42 39.64 3.51
418 422 4.275936 CCTTTTCCTTTGTCGTCATTGACT 59.724 41.667 14.54 0.00 39.64 3.41
419 423 4.274950 TCCTTTTCCTTTGTCGTCATTGAC 59.725 41.667 6.73 6.73 39.37 3.18
420 424 4.456535 TCCTTTTCCTTTGTCGTCATTGA 58.543 39.130 0.00 0.00 0.00 2.57
421 425 4.829064 TCCTTTTCCTTTGTCGTCATTG 57.171 40.909 0.00 0.00 0.00 2.82
422 426 5.126384 TGTTTCCTTTTCCTTTGTCGTCATT 59.874 36.000 0.00 0.00 0.00 2.57
423 427 4.642885 TGTTTCCTTTTCCTTTGTCGTCAT 59.357 37.500 0.00 0.00 0.00 3.06
424 428 4.011023 TGTTTCCTTTTCCTTTGTCGTCA 58.989 39.130 0.00 0.00 0.00 4.35
428 445 4.348656 GACGTGTTTCCTTTTCCTTTGTC 58.651 43.478 0.00 0.00 0.00 3.18
436 453 1.265905 GCGATGGACGTGTTTCCTTTT 59.734 47.619 0.00 0.00 44.60 2.27
471 498 9.569122 GTGAGCTTTGGGGAGTTTATATATAAA 57.431 33.333 12.90 12.90 0.00 1.40
472 499 8.945193 AGTGAGCTTTGGGGAGTTTATATATAA 58.055 33.333 0.81 0.81 0.00 0.98
473 500 8.375506 CAGTGAGCTTTGGGGAGTTTATATATA 58.624 37.037 0.00 0.00 0.00 0.86
474 501 7.227156 CAGTGAGCTTTGGGGAGTTTATATAT 58.773 38.462 0.00 0.00 0.00 0.86
475 502 6.591935 CAGTGAGCTTTGGGGAGTTTATATA 58.408 40.000 0.00 0.00 0.00 0.86
476 503 5.440610 CAGTGAGCTTTGGGGAGTTTATAT 58.559 41.667 0.00 0.00 0.00 0.86
477 504 4.843728 CAGTGAGCTTTGGGGAGTTTATA 58.156 43.478 0.00 0.00 0.00 0.98
478 505 3.690460 CAGTGAGCTTTGGGGAGTTTAT 58.310 45.455 0.00 0.00 0.00 1.40
503 530 3.490761 GCAAAGGTCTGCAAAGTAAAGCA 60.491 43.478 0.00 0.00 42.17 3.91
504 531 3.052745 GCAAAGGTCTGCAAAGTAAAGC 58.947 45.455 0.00 0.00 42.17 3.51
505 532 3.319122 AGGCAAAGGTCTGCAAAGTAAAG 59.681 43.478 0.00 0.00 44.52 1.85
506 533 3.295973 AGGCAAAGGTCTGCAAAGTAAA 58.704 40.909 0.00 0.00 44.52 2.01
507 534 2.884639 GAGGCAAAGGTCTGCAAAGTAA 59.115 45.455 0.00 0.00 44.52 2.24
530 557 0.727398 GCCTCGTGTTAGCATGGAAC 59.273 55.000 0.00 0.00 32.65 3.62
531 558 0.739462 CGCCTCGTGTTAGCATGGAA 60.739 55.000 0.00 0.00 32.65 3.53
532 559 1.153647 CGCCTCGTGTTAGCATGGA 60.154 57.895 0.00 0.00 32.65 3.41
533 560 1.153647 TCGCCTCGTGTTAGCATGG 60.154 57.895 0.00 0.00 32.65 3.66
534 561 0.735978 TGTCGCCTCGTGTTAGCATG 60.736 55.000 0.00 0.00 0.00 4.06
535 562 0.175760 ATGTCGCCTCGTGTTAGCAT 59.824 50.000 0.00 0.00 0.00 3.79
536 563 0.812549 TATGTCGCCTCGTGTTAGCA 59.187 50.000 0.00 0.00 0.00 3.49
537 564 1.917273 TTATGTCGCCTCGTGTTAGC 58.083 50.000 0.00 0.00 0.00 3.09
538 565 6.764877 ATAATTTATGTCGCCTCGTGTTAG 57.235 37.500 0.00 0.00 0.00 2.34
539 566 7.542534 AAATAATTTATGTCGCCTCGTGTTA 57.457 32.000 0.00 0.00 0.00 2.41
542 569 6.939627 TGTAAATAATTTATGTCGCCTCGTG 58.060 36.000 0.00 0.00 0.00 4.35
543 570 7.542534 TTGTAAATAATTTATGTCGCCTCGT 57.457 32.000 0.00 0.00 0.00 4.18
544 571 8.332464 TCTTTGTAAATAATTTATGTCGCCTCG 58.668 33.333 0.00 0.00 0.00 4.63
545 572 9.997482 TTCTTTGTAAATAATTTATGTCGCCTC 57.003 29.630 0.00 0.00 0.00 4.70
547 574 9.562583 TGTTCTTTGTAAATAATTTATGTCGCC 57.437 29.630 0.00 0.00 0.00 5.54
573 615 6.070995 TGTCCACGTAAATTCTGGTTCTAGAT 60.071 38.462 0.00 0.00 0.00 1.98
608 654 2.726832 AATATCGCCTCGTTCTAGCC 57.273 50.000 0.00 0.00 0.00 3.93
636 685 8.644216 GGAAAGGGTCCTAATTTTAGTGAAAAA 58.356 33.333 0.00 0.00 43.98 1.94
637 686 8.185506 GGAAAGGGTCCTAATTTTAGTGAAAA 57.814 34.615 0.00 0.00 43.98 2.29
638 687 7.770366 GGAAAGGGTCCTAATTTTAGTGAAA 57.230 36.000 0.00 0.00 43.98 2.69
699 751 1.729586 AGTTGGTAACTCTCAGCCCA 58.270 50.000 0.00 0.00 37.02 5.36
700 752 2.861147 AAGTTGGTAACTCTCAGCCC 57.139 50.000 0.00 0.00 41.91 5.19
702 754 2.924290 CGCTAAGTTGGTAACTCTCAGC 59.076 50.000 10.43 10.43 41.91 4.26
703 755 4.175787 ACGCTAAGTTGGTAACTCTCAG 57.824 45.455 0.00 0.00 41.91 3.35
704 756 5.909621 ATACGCTAAGTTGGTAACTCTCA 57.090 39.130 0.00 0.00 41.91 3.27
706 758 7.723172 ACCTATATACGCTAAGTTGGTAACTCT 59.277 37.037 0.00 0.00 41.91 3.24
707 759 7.806960 CACCTATATACGCTAAGTTGGTAACTC 59.193 40.741 0.00 0.00 41.91 3.01
708 760 7.503566 TCACCTATATACGCTAAGTTGGTAACT 59.496 37.037 0.00 0.00 45.46 2.24
709 761 7.651808 TCACCTATATACGCTAAGTTGGTAAC 58.348 38.462 0.00 0.00 0.00 2.50
731 785 1.953559 TCTTGGCTCTGTGTGTTCAC 58.046 50.000 0.00 0.00 44.08 3.18
733 787 2.079925 GGATCTTGGCTCTGTGTGTTC 58.920 52.381 0.00 0.00 0.00 3.18
734 788 1.701847 AGGATCTTGGCTCTGTGTGTT 59.298 47.619 0.00 0.00 0.00 3.32
739 802 1.834263 GTGGTAGGATCTTGGCTCTGT 59.166 52.381 0.00 0.00 0.00 3.41
740 803 1.833630 TGTGGTAGGATCTTGGCTCTG 59.166 52.381 0.00 0.00 0.00 3.35
815 879 0.037232 AAACGTGGCTAGCAGGAGAC 60.037 55.000 18.24 3.71 0.00 3.36
925 995 3.489513 CCCCCTTCCCCACGATCC 61.490 72.222 0.00 0.00 0.00 3.36
942 1012 1.113788 ATGGCCATGTATTGTGGTGC 58.886 50.000 20.04 0.00 39.01 5.01
950 1023 0.826256 CCAGCTGCATGGCCATGTAT 60.826 55.000 39.08 23.14 40.80 2.29
1112 1185 4.329545 TCCCGGTGAGCCTGTTGC 62.330 66.667 0.00 0.00 41.71 4.17
1138 1211 1.657751 CTGAGTGACCCGATGCTCGA 61.658 60.000 7.07 0.00 43.74 4.04
1148 1221 1.662438 CCGGAGCTCTCTGAGTGACC 61.662 65.000 14.64 10.82 38.21 4.02
1284 1360 2.169769 TCCCGCTAGTTGTCCTATTTGG 59.830 50.000 0.00 0.00 37.10 3.28
1301 1377 0.951040 GTCCAGCTTCACAAGTCCCG 60.951 60.000 0.00 0.00 0.00 5.14
1355 1431 5.128008 AGCTTCTTTAGGTAGCCTAGTTCAG 59.872 44.000 0.00 0.00 37.42 3.02
1390 1466 4.236935 GTGAGGTTGTTGTTGGCAATATG 58.763 43.478 1.92 0.00 36.92 1.78
1535 1611 2.857483 TCAATTTGTTGCGGGAGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
1578 1654 0.548031 TGAGGTTGATCATGCCTCCC 59.452 55.000 29.06 16.10 46.05 4.30
1725 1873 8.007405 ACAAGCTAGTGAGGTTTGTTAAATTT 57.993 30.769 0.00 0.00 41.49 1.82
1812 1960 4.980573 TGGAGCTAAGAGCCAACTTTTTA 58.019 39.130 0.00 0.00 43.77 1.52
1823 1971 5.385617 CGTTGAAATTGTTGGAGCTAAGAG 58.614 41.667 0.00 0.00 0.00 2.85
1904 2123 1.530323 ACACCCGGAAAGTGTATTGC 58.470 50.000 12.60 0.00 46.37 3.56
1961 2180 7.506328 AGTTTGTTTACACTAAGATCCAACC 57.494 36.000 0.00 0.00 0.00 3.77
1977 2340 8.927675 TGGGAATAGTACACATTAGTTTGTTT 57.072 30.769 0.00 0.00 0.00 2.83
2019 2382 5.209659 AGGACCAGGATAGTTAGGTTACTG 58.790 45.833 0.00 0.00 33.77 2.74
2035 2398 3.000727 GTTGGTTATCACGAAGGACCAG 58.999 50.000 0.00 0.00 41.06 4.00
2039 2402 3.921677 GTGAGTTGGTTATCACGAAGGA 58.078 45.455 0.00 0.00 36.76 3.36
2246 2609 7.707104 ACTGTTATTAGATGCAGTTAAATGCC 58.293 34.615 23.74 10.39 45.91 4.40
2284 2647 2.554032 AGTGTAGCAAACTTGATGGCAC 59.446 45.455 0.00 8.29 35.55 5.01
3159 3525 1.002888 ACAAGAGACATCAGCACAGGG 59.997 52.381 0.00 0.00 0.00 4.45
3396 3763 6.375455 ACATCTTCTTCACCGCAAATATTTCT 59.625 34.615 0.00 0.00 0.00 2.52
3446 3813 0.905357 ATGGAAGAGTGACCCCTTCG 59.095 55.000 8.54 0.00 39.60 3.79
3468 3835 1.632422 GCACCAATGCCTCAATTTCG 58.368 50.000 0.00 0.00 46.97 3.46
3513 3880 5.008712 GCTACAGGAACAATACCCAAATAGC 59.991 44.000 0.00 0.00 0.00 2.97
3576 3943 1.239968 CCAGTGCTTCTGCCAAGTCC 61.240 60.000 4.40 0.00 42.38 3.85
3595 3962 0.259938 ACTGCCCTTCCATTGATCCC 59.740 55.000 0.00 0.00 0.00 3.85
3906 4274 1.692519 GTACTCCCTGCGTCCCATAAT 59.307 52.381 0.00 0.00 0.00 1.28
3977 4345 5.351465 CCAAAGCTGTATACGTCACATTTCT 59.649 40.000 0.00 0.00 0.00 2.52
4029 4397 1.142465 AGCAATTCGCCTGGATGAGAT 59.858 47.619 0.00 0.00 44.04 2.75
4057 4425 2.847327 TTCTTGTTGGCCTCAGAGAG 57.153 50.000 3.32 0.00 0.00 3.20
4070 4438 4.122776 CAGGCTCGCAGTATTATTCTTGT 58.877 43.478 0.00 0.00 0.00 3.16
4125 4493 2.436646 CCCGCGGTTTCAGCATCT 60.437 61.111 26.12 0.00 34.19 2.90
4140 4508 4.973168 TGAGCATGTGGTATATTTCTCCC 58.027 43.478 0.00 0.00 0.00 4.30
4163 4531 2.408333 AGGCACTGAACTGCAACAC 58.592 52.632 0.00 0.00 39.08 3.32
4206 4574 0.502695 CACTAGCACGTCGTGTTGTG 59.497 55.000 25.18 23.53 39.10 3.33
4212 4580 1.226686 ACTCGTCACTAGCACGTCGT 61.227 55.000 13.04 0.00 38.45 4.34
4227 4595 4.569761 TGCCTTACTAGCAGATAACTCG 57.430 45.455 0.00 0.00 34.69 4.18
4231 4599 7.564793 TCTTCAAATGCCTTACTAGCAGATAA 58.435 34.615 0.00 0.00 44.90 1.75
4242 4610 7.649533 ATGAACATGATCTTCAAATGCCTTA 57.350 32.000 0.00 0.00 31.48 2.69
4245 4613 8.358148 AGATAATGAACATGATCTTCAAATGCC 58.642 33.333 0.00 0.00 35.89 4.40
4256 4624 5.048013 CCAGCATGCAGATAATGAACATGAT 60.048 40.000 21.98 0.00 40.39 2.45
4314 4682 2.934887 TGGCACGAATTCATCATCCAT 58.065 42.857 6.22 0.00 0.00 3.41
4356 4724 9.774071 ACTTTTATTCAACTAGGTAGGTAGGTA 57.226 33.333 0.00 0.00 0.00 3.08
4357 4725 8.537858 CACTTTTATTCAACTAGGTAGGTAGGT 58.462 37.037 0.00 0.00 0.00 3.08
4358 4726 8.537858 ACACTTTTATTCAACTAGGTAGGTAGG 58.462 37.037 0.00 0.00 0.00 3.18
4610 5008 9.381038 ACACTAACAATACATCCTCCATATAGT 57.619 33.333 0.00 0.00 0.00 2.12
4735 5136 6.418101 AGTATGCTATCAGGACACAAACAAT 58.582 36.000 0.00 0.00 0.00 2.71
4786 8775 3.519107 TGCTCAAGTATCCATGTTCCAGA 59.481 43.478 0.00 0.00 0.00 3.86
4830 8825 5.121221 GCACTTGTACTGCCATTTTACTT 57.879 39.130 0.00 0.00 0.00 2.24
4866 8861 6.616137 TCACCCCTGTACCAAATGTATATACA 59.384 38.462 17.65 17.65 40.98 2.29
4909 8958 3.244078 CCAAACTAGTGCCACTCTGTACA 60.244 47.826 0.00 0.00 0.00 2.90
4939 8988 7.106439 TCTTTTCTGTTCCAGTAAAATGCAA 57.894 32.000 0.00 0.00 32.21 4.08
5049 9107 4.856801 CGGCATTCCAGACGGGGG 62.857 72.222 0.00 0.00 36.07 5.40
5086 9144 3.978193 AGTTTGATGCCGCCCCCA 61.978 61.111 0.00 0.00 0.00 4.96
5129 9192 4.141981 TGAACAGCTCAAGCCAAAATGAAA 60.142 37.500 0.00 0.00 43.38 2.69
5211 9305 9.474920 GCTCTCTCCTGATTTATGTATATATGC 57.525 37.037 0.00 0.00 0.00 3.14
5259 9353 6.924060 CACTGCCTAATAATAACTAACGAGCT 59.076 38.462 0.00 0.00 0.00 4.09
5260 9354 6.145696 CCACTGCCTAATAATAACTAACGAGC 59.854 42.308 0.00 0.00 0.00 5.03
5261 9355 7.208080 ACCACTGCCTAATAATAACTAACGAG 58.792 38.462 0.00 0.00 0.00 4.18
5262 9356 7.116075 ACCACTGCCTAATAATAACTAACGA 57.884 36.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.