Multiple sequence alignment - TraesCS2D01G025800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G025800 chr2D 100.000 3839 0 0 1 3839 11080966 11084804 0.000000e+00 7090.0
1 TraesCS2D01G025800 chr2D 94.913 747 19 4 3097 3839 155541881 155542612 0.000000e+00 1151.0
2 TraesCS2D01G025800 chr2D 94.758 744 22 4 3097 3839 632017285 632018012 0.000000e+00 1142.0
3 TraesCS2D01G025800 chr2D 94.008 751 37 7 3096 3839 25162362 25161613 0.000000e+00 1131.0
4 TraesCS2D01G025800 chrUn 87.946 1261 106 24 613 1852 248329649 248330884 0.000000e+00 1445.0
5 TraesCS2D01G025800 chrUn 91.810 757 61 1 2108 2863 248330896 248331652 0.000000e+00 1053.0
6 TraesCS2D01G025800 chrUn 86.187 876 84 24 705 1579 397846300 397845461 0.000000e+00 913.0
7 TraesCS2D01G025800 chrUn 90.604 596 45 5 2309 2898 307584984 307584394 0.000000e+00 780.0
8 TraesCS2D01G025800 chrUn 90.604 596 45 5 2309 2898 307589127 307588537 0.000000e+00 780.0
9 TraesCS2D01G025800 chrUn 90.604 596 45 5 2309 2898 318417431 318416841 0.000000e+00 780.0
10 TraesCS2D01G025800 chrUn 78.505 856 141 28 994 1833 267776216 267777044 4.390000e-144 521.0
11 TraesCS2D01G025800 chrUn 78.505 856 141 28 994 1833 324119871 324119043 4.390000e-144 521.0
12 TraesCS2D01G025800 chrUn 80.000 655 105 17 2180 2819 239336579 239337222 9.720000e-126 460.0
13 TraesCS2D01G025800 chrUn 80.000 655 105 17 2180 2819 267860318 267860961 9.720000e-126 460.0
14 TraesCS2D01G025800 chrUn 79.372 669 108 23 2169 2819 267777109 267777765 9.790000e-121 444.0
15 TraesCS2D01G025800 chrUn 80.106 377 54 13 155 525 257522816 257523177 1.060000e-65 261.0
16 TraesCS2D01G025800 chrUn 80.106 377 54 13 155 525 366986759 366987120 1.060000e-65 261.0
17 TraesCS2D01G025800 chrUn 89.899 99 10 0 1734 1832 463789185 463789087 1.120000e-25 128.0
18 TraesCS2D01G025800 chrUn 89.899 99 10 0 1734 1832 474273443 474273345 1.120000e-25 128.0
19 TraesCS2D01G025800 chr4D 96.237 744 25 3 3097 3839 414628278 414629019 0.000000e+00 1216.0
20 TraesCS2D01G025800 chr4D 86.207 174 23 1 1843 2016 310621569 310621741 1.820000e-43 187.0
21 TraesCS2D01G025800 chr4D 84.444 180 26 2 1835 2014 389503391 389503568 3.940000e-40 176.0
22 TraesCS2D01G025800 chr1D 95.448 747 18 3 3094 3839 276505330 276506061 0.000000e+00 1177.0
23 TraesCS2D01G025800 chr1D 88.136 177 20 1 1844 2019 409179909 409179733 3.890000e-50 209.0
24 TraesCS2D01G025800 chr1D 87.647 170 21 0 1847 2016 191217595 191217764 8.410000e-47 198.0
25 TraesCS2D01G025800 chr6D 94.920 748 26 4 3097 3839 445334427 445333687 0.000000e+00 1160.0
26 TraesCS2D01G025800 chr6D 85.542 83 8 1 2021 2099 360592047 360591965 2.460000e-12 84.2
27 TraesCS2D01G025800 chr5D 95.027 744 21 3 3097 3839 384193315 384192587 0.000000e+00 1155.0
28 TraesCS2D01G025800 chr5D 89.937 159 15 1 1 159 503635382 503635539 1.810000e-48 204.0
29 TraesCS2D01G025800 chr1A 94.906 746 22 3 3095 3839 1334611 1333881 0.000000e+00 1153.0
30 TraesCS2D01G025800 chr1A 88.889 54 4 2 2048 2101 354308492 354308543 8.900000e-07 65.8
31 TraesCS2D01G025800 chr7A 93.867 750 24 9 3097 3839 2780812 2780078 0.000000e+00 1110.0
32 TraesCS2D01G025800 chr7A 92.473 744 39 9 3097 3839 652942090 652941363 0.000000e+00 1048.0
33 TraesCS2D01G025800 chr7A 86.207 58 6 2 2043 2099 424977771 424977827 1.150000e-05 62.1
34 TraesCS2D01G025800 chr2A 92.737 771 50 3 2188 2952 11902755 11901985 0.000000e+00 1109.0
35 TraesCS2D01G025800 chr2A 87.813 919 73 21 926 1834 11904274 11903385 0.000000e+00 1040.0
36 TraesCS2D01G025800 chr2A 79.319 764 90 35 155 879 11905005 11904271 1.250000e-129 473.0
37 TraesCS2D01G025800 chr2A 86.207 58 6 2 2043 2099 250813670 250813614 1.150000e-05 62.1
38 TraesCS2D01G025800 chr2B 89.266 885 69 15 953 1834 16891701 16892562 0.000000e+00 1085.0
39 TraesCS2D01G025800 chr2B 90.601 766 66 4 2188 2952 16893190 16893950 0.000000e+00 1011.0
40 TraesCS2D01G025800 chr2B 88.318 856 74 15 982 1834 17351261 17350429 0.000000e+00 1003.0
41 TraesCS2D01G025800 chr2B 88.536 724 50 11 2188 2910 17349799 17349108 0.000000e+00 846.0
42 TraesCS2D01G025800 chr2B 83.667 649 59 22 662 1297 17266576 17265962 5.570000e-158 568.0
43 TraesCS2D01G025800 chr2B 90.043 231 20 3 2858 3087 17264958 17264730 2.900000e-76 296.0
44 TraesCS2D01G025800 chr2B 86.224 196 17 6 654 845 16891459 16891648 1.810000e-48 204.0
45 TraesCS2D01G025800 chr2B 86.782 174 22 1 1847 2019 728387744 728387571 3.910000e-45 193.0
46 TraesCS2D01G025800 chr2B 85.246 61 3 6 2043 2100 620198457 620198514 1.490000e-04 58.4
47 TraesCS2D01G025800 chr7B 94.162 668 32 6 3099 3762 641592907 641592243 0.000000e+00 1011.0
48 TraesCS2D01G025800 chr7B 91.613 155 12 1 1 155 643298257 643298104 3.000000e-51 213.0
49 TraesCS2D01G025800 chr7B 89.937 159 15 1 1 159 11898272 11898115 1.810000e-48 204.0
50 TraesCS2D01G025800 chr7B 86.517 178 22 2 1838 2013 370002917 370002740 1.090000e-45 195.0
51 TraesCS2D01G025800 chr7B 91.304 46 4 0 2054 2099 148011515 148011560 3.200000e-06 63.9
52 TraesCS2D01G025800 chr5B 94.457 451 10 6 3390 3839 74657298 74656862 0.000000e+00 680.0
53 TraesCS2D01G025800 chr5B 91.139 158 13 1 1 158 233815167 233815011 3.000000e-51 213.0
54 TraesCS2D01G025800 chr5B 90.506 158 14 1 1 158 625133343 625133187 1.400000e-49 207.0
55 TraesCS2D01G025800 chr5B 88.235 170 20 0 1847 2016 152230542 152230711 1.810000e-48 204.0
56 TraesCS2D01G025800 chr6A 94.545 440 9 2 3401 3839 555212894 555213319 0.000000e+00 665.0
57 TraesCS2D01G025800 chr3D 91.765 170 14 0 1843 2012 169549701 169549532 1.780000e-58 237.0
58 TraesCS2D01G025800 chr3D 86.207 58 6 2 2043 2099 290971952 290971896 1.150000e-05 62.1
59 TraesCS2D01G025800 chr3B 88.950 181 16 4 1088 1266 176636621 176636443 1.800000e-53 220.0
60 TraesCS2D01G025800 chr4B 89.474 171 18 0 1844 2014 443942450 443942280 2.320000e-52 217.0
61 TraesCS2D01G025800 chr4B 91.613 155 12 1 4 158 434599724 434599877 3.000000e-51 213.0
62 TraesCS2D01G025800 chr4B 96.970 33 1 0 3068 3100 654723052 654723020 5.360000e-04 56.5
63 TraesCS2D01G025800 chr6B 91.139 158 13 1 1 158 655773387 655773231 3.000000e-51 213.0
64 TraesCS2D01G025800 chr7D 89.937 159 15 1 1 159 2078551 2078394 1.810000e-48 204.0
65 TraesCS2D01G025800 chr4A 88.166 169 17 3 1 168 649016523 649016689 8.410000e-47 198.0
66 TraesCS2D01G025800 chr1B 93.478 46 3 0 2054 2099 503870522 503870567 6.880000e-08 69.4
67 TraesCS2D01G025800 chr5A 85.965 57 6 2 2044 2099 205034663 205034718 4.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G025800 chr2D 11080966 11084804 3838 False 7090.000000 7090 100.0000 1 3839 1 chr2D.!!$F1 3838
1 TraesCS2D01G025800 chr2D 155541881 155542612 731 False 1151.000000 1151 94.9130 3097 3839 1 chr2D.!!$F2 742
2 TraesCS2D01G025800 chr2D 632017285 632018012 727 False 1142.000000 1142 94.7580 3097 3839 1 chr2D.!!$F3 742
3 TraesCS2D01G025800 chr2D 25161613 25162362 749 True 1131.000000 1131 94.0080 3096 3839 1 chr2D.!!$R1 743
4 TraesCS2D01G025800 chrUn 248329649 248331652 2003 False 1249.000000 1445 89.8780 613 2863 2 chrUn.!!$F5 2250
5 TraesCS2D01G025800 chrUn 397845461 397846300 839 True 913.000000 913 86.1870 705 1579 1 chrUn.!!$R3 874
6 TraesCS2D01G025800 chrUn 307584394 307589127 4733 True 780.000000 780 90.6040 2309 2898 2 chrUn.!!$R6 589
7 TraesCS2D01G025800 chrUn 318416841 318417431 590 True 780.000000 780 90.6040 2309 2898 1 chrUn.!!$R1 589
8 TraesCS2D01G025800 chrUn 324119043 324119871 828 True 521.000000 521 78.5050 994 1833 1 chrUn.!!$R2 839
9 TraesCS2D01G025800 chrUn 267776216 267777765 1549 False 482.500000 521 78.9385 994 2819 2 chrUn.!!$F6 1825
10 TraesCS2D01G025800 chrUn 239336579 239337222 643 False 460.000000 460 80.0000 2180 2819 1 chrUn.!!$F1 639
11 TraesCS2D01G025800 chrUn 267860318 267860961 643 False 460.000000 460 80.0000 2180 2819 1 chrUn.!!$F3 639
12 TraesCS2D01G025800 chr4D 414628278 414629019 741 False 1216.000000 1216 96.2370 3097 3839 1 chr4D.!!$F3 742
13 TraesCS2D01G025800 chr1D 276505330 276506061 731 False 1177.000000 1177 95.4480 3094 3839 1 chr1D.!!$F2 745
14 TraesCS2D01G025800 chr6D 445333687 445334427 740 True 1160.000000 1160 94.9200 3097 3839 1 chr6D.!!$R2 742
15 TraesCS2D01G025800 chr5D 384192587 384193315 728 True 1155.000000 1155 95.0270 3097 3839 1 chr5D.!!$R1 742
16 TraesCS2D01G025800 chr1A 1333881 1334611 730 True 1153.000000 1153 94.9060 3095 3839 1 chr1A.!!$R1 744
17 TraesCS2D01G025800 chr7A 2780078 2780812 734 True 1110.000000 1110 93.8670 3097 3839 1 chr7A.!!$R1 742
18 TraesCS2D01G025800 chr7A 652941363 652942090 727 True 1048.000000 1048 92.4730 3097 3839 1 chr7A.!!$R2 742
19 TraesCS2D01G025800 chr2A 11901985 11905005 3020 True 874.000000 1109 86.6230 155 2952 3 chr2A.!!$R2 2797
20 TraesCS2D01G025800 chr2B 17349108 17351261 2153 True 924.500000 1003 88.4270 982 2910 2 chr2B.!!$R3 1928
21 TraesCS2D01G025800 chr2B 16891459 16893950 2491 False 766.666667 1085 88.6970 654 2952 3 chr2B.!!$F2 2298
22 TraesCS2D01G025800 chr2B 17264730 17266576 1846 True 432.000000 568 86.8550 662 3087 2 chr2B.!!$R2 2425
23 TraesCS2D01G025800 chr7B 641592243 641592907 664 True 1011.000000 1011 94.1620 3099 3762 1 chr7B.!!$R3 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.032540 GGACTTTTGCAGCAACTGGG 59.967 55.0 7.54 0.96 31.21 4.45 F
147 148 0.393537 GCAGCAACTGGGTAGAGCAT 60.394 55.0 0.00 0.00 33.23 3.79 F
1939 2054 0.119358 AAGTAAGGGGAGTGGGCTCT 59.881 55.0 0.00 0.00 41.38 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2046 0.108945 GCTTTTGCATGAGAGCCCAC 60.109 55.0 0.00 0.0 46.58 4.61 R
1963 2078 0.253044 TTGCATCTACCCTGGAGCAC 59.747 55.0 0.00 0.0 0.00 4.40 R
3044 5925 0.179156 GAAATCTCACCGCGTACCGA 60.179 55.0 4.92 0.0 40.02 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.389570 AGTATTAAATAAAAACGATTATGCGGC 57.610 29.630 0.00 0.00 35.12 6.53
33 34 7.631915 ATTAAATAAAAACGATTATGCGGCC 57.368 32.000 0.00 0.00 35.12 6.13
34 35 4.911514 AATAAAAACGATTATGCGGCCT 57.088 36.364 0.00 0.00 35.12 5.19
35 36 6.380095 AAATAAAAACGATTATGCGGCCTA 57.620 33.333 0.00 0.00 35.12 3.93
36 37 3.685836 AAAAACGATTATGCGGCCTAC 57.314 42.857 0.00 0.00 35.12 3.18
37 38 2.319136 AAACGATTATGCGGCCTACA 57.681 45.000 0.00 0.00 35.12 2.74
39 40 2.080286 ACGATTATGCGGCCTACATC 57.920 50.000 11.09 0.12 35.12 3.06
40 41 0.992072 CGATTATGCGGCCTACATCG 59.008 55.000 11.09 8.06 0.00 3.84
42 43 2.735444 CGATTATGCGGCCTACATCGAT 60.735 50.000 11.09 7.52 36.47 3.59
44 45 0.530744 TATGCGGCCTACATCGATCC 59.469 55.000 11.09 0.00 0.00 3.36
47 48 1.006102 CGGCCTACATCGATCCCAC 60.006 63.158 0.00 0.00 0.00 4.61
48 49 1.744320 CGGCCTACATCGATCCCACA 61.744 60.000 0.00 0.00 0.00 4.17
49 50 0.687354 GGCCTACATCGATCCCACAT 59.313 55.000 0.00 0.00 0.00 3.21
50 51 1.338200 GGCCTACATCGATCCCACATC 60.338 57.143 0.00 0.00 0.00 3.06
51 52 1.620819 GCCTACATCGATCCCACATCT 59.379 52.381 0.00 0.00 0.00 2.90
52 53 2.826128 GCCTACATCGATCCCACATCTA 59.174 50.000 0.00 0.00 0.00 1.98
55 56 3.969287 ACATCGATCCCACATCTATGG 57.031 47.619 0.00 0.00 39.71 2.74
56 57 3.510459 ACATCGATCCCACATCTATGGA 58.490 45.455 0.00 0.00 43.02 3.41
57 58 3.259374 ACATCGATCCCACATCTATGGAC 59.741 47.826 0.00 0.00 43.02 4.02
58 59 3.244887 TCGATCCCACATCTATGGACT 57.755 47.619 0.00 0.00 43.02 3.85
60 61 4.079970 TCGATCCCACATCTATGGACTAC 58.920 47.826 0.00 0.00 43.02 2.73
61 62 3.826729 CGATCCCACATCTATGGACTACA 59.173 47.826 0.00 0.00 43.02 2.74
62 63 4.280929 CGATCCCACATCTATGGACTACAA 59.719 45.833 0.00 0.00 43.02 2.41
63 64 5.047021 CGATCCCACATCTATGGACTACAAT 60.047 44.000 0.00 0.00 43.02 2.71
64 65 6.152831 CGATCCCACATCTATGGACTACAATA 59.847 42.308 0.00 0.00 43.02 1.90
65 66 6.918067 TCCCACATCTATGGACTACAATAG 57.082 41.667 0.00 0.00 43.02 1.73
66 67 5.780282 TCCCACATCTATGGACTACAATAGG 59.220 44.000 0.00 0.00 43.02 2.57
69 70 6.437477 CCACATCTATGGACTACAATAGGCTA 59.563 42.308 0.00 0.00 43.02 3.93
71 72 7.394641 CACATCTATGGACTACAATAGGCTAGA 59.605 40.741 0.00 0.00 33.11 2.43
73 74 5.938710 TCTATGGACTACAATAGGCTAGACG 59.061 44.000 0.00 0.00 33.11 4.18
74 75 3.894759 TGGACTACAATAGGCTAGACGT 58.105 45.455 0.00 0.00 33.11 4.34
76 77 3.881688 GGACTACAATAGGCTAGACGTGA 59.118 47.826 0.00 0.00 33.11 4.35
77 78 4.023878 GGACTACAATAGGCTAGACGTGAG 60.024 50.000 0.00 0.00 33.11 3.51
78 79 3.884091 ACTACAATAGGCTAGACGTGAGG 59.116 47.826 0.00 0.20 0.00 3.86
79 80 2.032620 ACAATAGGCTAGACGTGAGGG 58.967 52.381 0.00 0.00 0.00 4.30
83 84 2.128507 GGCTAGACGTGAGGGGGAG 61.129 68.421 0.00 0.00 0.00 4.30
84 85 1.380112 GCTAGACGTGAGGGGGAGT 60.380 63.158 0.00 0.00 0.00 3.85
85 86 1.668101 GCTAGACGTGAGGGGGAGTG 61.668 65.000 0.00 0.00 0.00 3.51
86 87 0.323542 CTAGACGTGAGGGGGAGTGT 60.324 60.000 0.00 0.00 0.00 3.55
87 88 0.113776 TAGACGTGAGGGGGAGTGTT 59.886 55.000 0.00 0.00 0.00 3.32
88 89 1.004918 GACGTGAGGGGGAGTGTTG 60.005 63.158 0.00 0.00 0.00 3.33
90 91 1.052124 ACGTGAGGGGGAGTGTTGAA 61.052 55.000 0.00 0.00 0.00 2.69
91 92 0.107831 CGTGAGGGGGAGTGTTGAAA 59.892 55.000 0.00 0.00 0.00 2.69
92 93 1.271379 CGTGAGGGGGAGTGTTGAAAT 60.271 52.381 0.00 0.00 0.00 2.17
93 94 2.027561 CGTGAGGGGGAGTGTTGAAATA 60.028 50.000 0.00 0.00 0.00 1.40
94 95 3.370527 CGTGAGGGGGAGTGTTGAAATAT 60.371 47.826 0.00 0.00 0.00 1.28
96 97 5.454755 CGTGAGGGGGAGTGTTGAAATATAT 60.455 44.000 0.00 0.00 0.00 0.86
97 98 6.365520 GTGAGGGGGAGTGTTGAAATATATT 58.634 40.000 0.00 0.00 0.00 1.28
98 99 6.263168 GTGAGGGGGAGTGTTGAAATATATTG 59.737 42.308 0.00 0.00 0.00 1.90
100 101 4.280929 GGGGGAGTGTTGAAATATATTGCC 59.719 45.833 0.00 0.00 0.00 4.52
101 102 4.280929 GGGGAGTGTTGAAATATATTGCCC 59.719 45.833 0.00 0.00 0.00 5.36
103 104 4.537015 GAGTGTTGAAATATATTGCCCGC 58.463 43.478 0.00 0.00 0.00 6.13
104 105 3.317993 AGTGTTGAAATATATTGCCCGCC 59.682 43.478 0.00 0.00 0.00 6.13
105 106 3.317993 GTGTTGAAATATATTGCCCGCCT 59.682 43.478 0.00 0.00 0.00 5.52
106 107 3.568007 TGTTGAAATATATTGCCCGCCTC 59.432 43.478 0.00 0.00 0.00 4.70
107 108 2.790433 TGAAATATATTGCCCGCCTCC 58.210 47.619 0.00 0.00 0.00 4.30
108 109 2.375174 TGAAATATATTGCCCGCCTCCT 59.625 45.455 0.00 0.00 0.00 3.69
110 111 3.525800 AATATATTGCCCGCCTCCTTT 57.474 42.857 0.00 0.00 0.00 3.11
112 113 0.550914 ATATTGCCCGCCTCCTTTCA 59.449 50.000 0.00 0.00 0.00 2.69
113 114 0.550914 TATTGCCCGCCTCCTTTCAT 59.449 50.000 0.00 0.00 0.00 2.57
115 116 2.135903 TTGCCCGCCTCCTTTCATCA 62.136 55.000 0.00 0.00 0.00 3.07
116 117 1.821332 GCCCGCCTCCTTTCATCAG 60.821 63.158 0.00 0.00 0.00 2.90
119 120 1.373570 CCGCCTCCTTTCATCAGTTC 58.626 55.000 0.00 0.00 0.00 3.01
120 121 1.002366 CGCCTCCTTTCATCAGTTCG 58.998 55.000 0.00 0.00 0.00 3.95
121 122 1.373570 GCCTCCTTTCATCAGTTCGG 58.626 55.000 0.00 0.00 0.00 4.30
122 123 1.066143 GCCTCCTTTCATCAGTTCGGA 60.066 52.381 0.00 0.00 0.00 4.55
124 125 2.234908 CCTCCTTTCATCAGTTCGGACT 59.765 50.000 0.00 0.00 36.25 3.85
125 126 3.307059 CCTCCTTTCATCAGTTCGGACTT 60.307 47.826 0.00 0.00 32.54 3.01
126 127 4.319177 CTCCTTTCATCAGTTCGGACTTT 58.681 43.478 0.00 0.00 32.54 2.66
127 128 4.714632 TCCTTTCATCAGTTCGGACTTTT 58.285 39.130 0.00 0.00 32.54 2.27
128 129 4.515191 TCCTTTCATCAGTTCGGACTTTTG 59.485 41.667 0.00 0.00 32.54 2.44
129 130 3.896648 TTCATCAGTTCGGACTTTTGC 57.103 42.857 0.00 0.00 32.54 3.68
131 132 2.807967 TCATCAGTTCGGACTTTTGCAG 59.192 45.455 0.00 0.00 32.54 4.41
134 135 1.065401 CAGTTCGGACTTTTGCAGCAA 59.935 47.619 2.83 2.83 32.54 3.91
135 136 1.065551 AGTTCGGACTTTTGCAGCAAC 59.934 47.619 7.54 0.00 29.87 4.17
136 137 1.065551 GTTCGGACTTTTGCAGCAACT 59.934 47.619 7.54 0.00 0.00 3.16
137 138 0.662619 TCGGACTTTTGCAGCAACTG 59.337 50.000 7.54 6.17 34.12 3.16
139 140 0.032540 GGACTTTTGCAGCAACTGGG 59.967 55.000 7.54 0.96 31.21 4.45
141 142 1.953686 GACTTTTGCAGCAACTGGGTA 59.046 47.619 7.54 0.00 31.21 3.69
143 144 2.229792 CTTTTGCAGCAACTGGGTAGA 58.770 47.619 7.54 0.00 31.21 2.59
145 146 0.606401 TTGCAGCAACTGGGTAGAGC 60.606 55.000 2.83 0.00 31.21 4.09
147 148 0.393537 GCAGCAACTGGGTAGAGCAT 60.394 55.000 0.00 0.00 33.23 3.79
148 149 1.376543 CAGCAACTGGGTAGAGCATG 58.623 55.000 0.00 0.00 33.23 4.06
149 150 1.065926 CAGCAACTGGGTAGAGCATGA 60.066 52.381 0.00 0.00 33.23 3.07
150 151 1.630369 AGCAACTGGGTAGAGCATGAA 59.370 47.619 0.00 0.00 33.23 2.57
151 152 2.240667 AGCAACTGGGTAGAGCATGAAT 59.759 45.455 0.00 0.00 33.23 2.57
152 153 3.019564 GCAACTGGGTAGAGCATGAATT 58.980 45.455 0.00 0.00 0.00 2.17
155 156 4.574674 ACTGGGTAGAGCATGAATTCAA 57.425 40.909 13.09 0.00 0.00 2.69
156 157 5.121380 ACTGGGTAGAGCATGAATTCAAT 57.879 39.130 13.09 1.32 0.00 2.57
158 159 6.662755 ACTGGGTAGAGCATGAATTCAATAA 58.337 36.000 13.09 0.00 0.00 1.40
159 160 6.543831 ACTGGGTAGAGCATGAATTCAATAAC 59.456 38.462 13.09 5.23 0.00 1.89
160 161 6.422333 TGGGTAGAGCATGAATTCAATAACA 58.578 36.000 13.09 0.16 0.00 2.41
163 164 7.013655 GGGTAGAGCATGAATTCAATAACATGT 59.986 37.037 13.09 0.00 41.14 3.21
164 165 9.056005 GGTAGAGCATGAATTCAATAACATGTA 57.944 33.333 13.09 0.00 41.14 2.29
166 167 8.743085 AGAGCATGAATTCAATAACATGTAGT 57.257 30.769 13.09 0.00 41.14 2.73
167 168 9.182214 AGAGCATGAATTCAATAACATGTAGTT 57.818 29.630 13.09 0.00 44.27 2.24
262 263 9.045223 AGAAAAATGCCAAACTTTGATCTTAAC 57.955 29.630 2.87 0.00 0.00 2.01
265 266 4.870363 TGCCAAACTTTGATCTTAACAGC 58.130 39.130 2.87 0.00 0.00 4.40
266 267 4.237724 GCCAAACTTTGATCTTAACAGCC 58.762 43.478 2.87 0.00 0.00 4.85
270 271 7.577616 GCCAAACTTTGATCTTAACAGCCTAAT 60.578 37.037 2.87 0.00 0.00 1.73
288 289 7.910162 CAGCCTAATGTTGTATGTTCAATGTAC 59.090 37.037 0.00 0.00 0.00 2.90
313 314 5.825593 AAAGTTTAGAGTGTCCTGGATCA 57.174 39.130 0.00 0.00 0.00 2.92
318 319 7.331791 AGTTTAGAGTGTCCTGGATCAATAAC 58.668 38.462 0.00 2.07 0.00 1.89
321 322 8.603898 TTAGAGTGTCCTGGATCAATAACTTA 57.396 34.615 0.00 0.00 0.00 2.24
322 323 7.682787 AGAGTGTCCTGGATCAATAACTTAT 57.317 36.000 0.00 0.00 0.00 1.73
326 327 7.926555 AGTGTCCTGGATCAATAACTTATAACG 59.073 37.037 0.00 0.00 0.00 3.18
329 330 6.704493 TCCTGGATCAATAACTTATAACGCAC 59.296 38.462 0.00 0.00 0.00 5.34
337 338 9.589111 TCAATAACTTATAACGCACTTCACATA 57.411 29.630 0.00 0.00 0.00 2.29
351 352 7.029563 GCACTTCACATAGTTCCTTAATTTGG 58.970 38.462 0.00 0.00 0.00 3.28
375 376 9.250624 TGGTGTTTCAAAAATACGAAAAATAGG 57.749 29.630 0.00 0.00 33.17 2.57
379 380 7.575332 TTCAAAAATACGAAAAATAGGCAGC 57.425 32.000 0.00 0.00 0.00 5.25
380 381 5.797934 TCAAAAATACGAAAAATAGGCAGCG 59.202 36.000 0.00 0.00 0.00 5.18
381 382 5.554822 AAAATACGAAAAATAGGCAGCGA 57.445 34.783 0.00 0.00 0.00 4.93
382 383 5.751243 AAATACGAAAAATAGGCAGCGAT 57.249 34.783 0.00 0.00 0.00 4.58
384 385 1.593006 ACGAAAAATAGGCAGCGATCG 59.407 47.619 11.69 11.69 35.36 3.69
395 398 2.095213 GGCAGCGATCGTTTGATTTGTA 59.905 45.455 17.81 0.00 34.09 2.41
401 404 5.006746 AGCGATCGTTTGATTTGTAGGATTC 59.993 40.000 17.81 0.00 34.09 2.52
417 420 2.170607 GGATTCGAACCCTCAGGATTCA 59.829 50.000 0.00 0.00 36.73 2.57
440 443 4.038642 ACGCCTTAATTTGGTGTTTCATGT 59.961 37.500 9.64 0.00 44.89 3.21
452 455 2.364970 TGTTTCATGTGGGCTCCTTTTG 59.635 45.455 0.00 0.00 0.00 2.44
455 458 2.238521 TCATGTGGGCTCCTTTTGTTC 58.761 47.619 0.00 0.00 0.00 3.18
461 464 3.132111 GTGGGCTCCTTTTGTTCAAAGAA 59.868 43.478 0.00 0.00 44.40 2.52
462 465 3.772025 TGGGCTCCTTTTGTTCAAAGAAA 59.228 39.130 0.00 0.00 44.40 2.52
463 466 4.223923 TGGGCTCCTTTTGTTCAAAGAAAA 59.776 37.500 0.00 0.00 44.40 2.29
464 467 5.182487 GGGCTCCTTTTGTTCAAAGAAAAA 58.818 37.500 0.38 0.00 44.40 1.94
465 468 5.822519 GGGCTCCTTTTGTTCAAAGAAAAAT 59.177 36.000 0.38 0.00 44.40 1.82
466 469 6.989759 GGGCTCCTTTTGTTCAAAGAAAAATA 59.010 34.615 0.38 0.00 44.40 1.40
467 470 7.661437 GGGCTCCTTTTGTTCAAAGAAAAATAT 59.339 33.333 0.38 0.00 44.40 1.28
468 471 9.056005 GGCTCCTTTTGTTCAAAGAAAAATATT 57.944 29.630 0.38 0.00 44.40 1.28
525 528 9.650371 AAATTCATATGTACATCGTTTGATTCG 57.350 29.630 12.68 0.00 30.49 3.34
536 545 6.036083 ACATCGTTTGATTCGTAGGATTTGAG 59.964 38.462 0.00 0.00 30.49 3.02
540 549 2.158813 TGATTCGTAGGATTTGAGCCCC 60.159 50.000 0.00 0.00 0.00 5.80
560 588 2.419021 CCCCAGGCATTGCACTATTTTG 60.419 50.000 11.39 0.00 0.00 2.44
561 589 2.496871 CCCAGGCATTGCACTATTTTGA 59.503 45.455 11.39 0.00 0.00 2.69
568 596 6.018016 AGGCATTGCACTATTTTGAAACAAAC 60.018 34.615 11.39 0.00 0.00 2.93
569 597 6.135400 GCATTGCACTATTTTGAAACAAACC 58.865 36.000 3.15 0.00 0.00 3.27
571 599 7.566709 CATTGCACTATTTTGAAACAAACCTC 58.433 34.615 0.00 0.00 0.00 3.85
572 600 5.277825 TGCACTATTTTGAAACAAACCTCG 58.722 37.500 0.00 0.00 0.00 4.63
578 606 8.652463 ACTATTTTGAAACAAACCTCGTTTTTG 58.348 29.630 0.00 5.11 36.72 2.44
596 627 9.085250 TCGTTTTTGTAATACTTTGTTTTTCCC 57.915 29.630 0.00 0.00 0.00 3.97
599 630 8.631676 TTTTGTAATACTTTGTTTTTCCCGTC 57.368 30.769 0.00 0.00 0.00 4.79
604 635 4.301637 ACTTTGTTTTTCCCGTCATGTC 57.698 40.909 0.00 0.00 0.00 3.06
609 640 1.974265 TTTTCCCGTCATGTCAAGCA 58.026 45.000 0.00 0.00 0.00 3.91
610 641 1.234821 TTTCCCGTCATGTCAAGCAC 58.765 50.000 0.00 0.00 0.00 4.40
611 642 0.605319 TTCCCGTCATGTCAAGCACC 60.605 55.000 0.00 0.00 0.00 5.01
626 657 3.116079 AGCACCCTTTGAAGCAAATTG 57.884 42.857 0.00 0.00 32.70 2.32
668 699 9.574458 CATATAGGATTAGGATTCAACACTACG 57.426 37.037 0.00 0.00 0.00 3.51
817 862 2.187946 CAGTCGGTGGATCCAGCC 59.812 66.667 32.72 25.04 40.93 4.85
877 923 3.056821 GCCCTCATGGTTTAACTCCAAAC 60.057 47.826 0.00 0.00 38.52 2.93
1046 1098 2.041928 CCTGCTCCTCCCCCTCTT 59.958 66.667 0.00 0.00 0.00 2.85
1286 1362 1.191204 GTGCGCGCTTCTCTATTGATC 59.809 52.381 33.29 0.00 0.00 2.92
1311 1387 4.344865 GGCAGGCCACCCGAGAAA 62.345 66.667 5.01 0.00 35.76 2.52
1321 1401 2.612221 CCACCCGAGAAAGTACCAGTTC 60.612 54.545 0.00 0.00 0.00 3.01
1322 1402 2.036733 CACCCGAGAAAGTACCAGTTCA 59.963 50.000 0.00 0.00 0.00 3.18
1323 1403 2.299297 ACCCGAGAAAGTACCAGTTCAG 59.701 50.000 0.00 0.00 0.00 3.02
1324 1404 2.353803 CCCGAGAAAGTACCAGTTCAGG 60.354 54.545 0.00 0.08 0.00 3.86
1343 1428 5.773575 TCAGGCGATGACTATATGTTCTTC 58.226 41.667 0.00 0.00 31.12 2.87
1664 1779 6.417327 GCTTGATGAGAACTCAAATGATACG 58.583 40.000 8.59 0.00 43.58 3.06
1665 1780 6.036517 GCTTGATGAGAACTCAAATGATACGT 59.963 38.462 8.59 0.00 43.58 3.57
1708 1823 3.594134 CAAGAACTTCTTCGGCAGATCT 58.406 45.455 0.67 0.00 33.78 2.75
1790 1905 2.027745 GTGCAGGAAGTCAGATCCTTCA 60.028 50.000 10.99 0.00 45.06 3.02
1865 1980 5.730550 TGTTAGAGCAACTACAATAGTGGG 58.269 41.667 0.00 0.00 39.39 4.61
1866 1981 3.268023 AGAGCAACTACAATAGTGGGC 57.732 47.619 0.00 5.28 39.39 5.36
1869 1984 2.498481 AGCAACTACAATAGTGGGCGTA 59.502 45.455 0.00 0.00 41.81 4.42
1870 1985 3.134081 AGCAACTACAATAGTGGGCGTAT 59.866 43.478 0.00 0.00 41.81 3.06
1871 1986 4.342951 AGCAACTACAATAGTGGGCGTATA 59.657 41.667 0.00 0.00 41.81 1.47
1872 1987 4.684703 GCAACTACAATAGTGGGCGTATAG 59.315 45.833 0.00 0.00 39.39 1.31
1873 1988 4.516365 ACTACAATAGTGGGCGTATAGC 57.484 45.455 0.00 0.00 40.77 2.97
1886 2001 4.457834 GCGTATAGCCTACTTCCATGAT 57.542 45.455 0.00 0.00 40.81 2.45
1887 2002 5.578005 GCGTATAGCCTACTTCCATGATA 57.422 43.478 0.00 0.00 40.81 2.15
1888 2003 5.962433 GCGTATAGCCTACTTCCATGATAA 58.038 41.667 0.00 0.00 40.81 1.75
1889 2004 6.574350 GCGTATAGCCTACTTCCATGATAAT 58.426 40.000 0.00 0.00 40.81 1.28
1892 2007 9.436957 CGTATAGCCTACTTCCATGATAATTTT 57.563 33.333 0.00 0.00 0.00 1.82
1894 2009 6.396829 AGCCTACTTCCATGATAATTTTGC 57.603 37.500 0.00 0.00 0.00 3.68
1896 2011 6.608808 AGCCTACTTCCATGATAATTTTGCTT 59.391 34.615 0.00 0.00 0.00 3.91
1897 2012 7.779798 AGCCTACTTCCATGATAATTTTGCTTA 59.220 33.333 0.00 0.00 0.00 3.09
1898 2013 8.579863 GCCTACTTCCATGATAATTTTGCTTAT 58.420 33.333 0.00 0.00 0.00 1.73
1899 2014 9.903682 CCTACTTCCATGATAATTTTGCTTATG 57.096 33.333 0.00 0.00 0.00 1.90
1903 2018 9.806203 CTTCCATGATAATTTTGCTTATGTGAA 57.194 29.630 0.00 0.00 0.00 3.18
1907 2022 9.459640 CATGATAATTTTGCTTATGTGAAGGAG 57.540 33.333 0.00 0.00 0.00 3.69
1909 2024 9.241919 TGATAATTTTGCTTATGTGAAGGAGAA 57.758 29.630 0.00 0.00 0.00 2.87
1912 2027 7.765695 ATTTTGCTTATGTGAAGGAGAAAGA 57.234 32.000 0.00 0.00 0.00 2.52
1913 2028 6.560253 TTTGCTTATGTGAAGGAGAAAGAC 57.440 37.500 0.00 0.00 0.00 3.01
1914 2029 5.227569 TGCTTATGTGAAGGAGAAAGACA 57.772 39.130 0.00 0.00 0.00 3.41
1915 2030 5.809001 TGCTTATGTGAAGGAGAAAGACAT 58.191 37.500 0.00 0.00 0.00 3.06
1916 2031 5.645067 TGCTTATGTGAAGGAGAAAGACATG 59.355 40.000 0.00 0.00 0.00 3.21
1919 2034 7.094634 GCTTATGTGAAGGAGAAAGACATGAAA 60.095 37.037 0.00 0.00 0.00 2.69
1922 2037 7.031226 TGTGAAGGAGAAAGACATGAAAAAG 57.969 36.000 0.00 0.00 0.00 2.27
1923 2038 6.603201 TGTGAAGGAGAAAGACATGAAAAAGT 59.397 34.615 0.00 0.00 0.00 2.66
1924 2039 7.773224 TGTGAAGGAGAAAGACATGAAAAAGTA 59.227 33.333 0.00 0.00 0.00 2.24
1925 2040 8.621286 GTGAAGGAGAAAGACATGAAAAAGTAA 58.379 33.333 0.00 0.00 0.00 2.24
1926 2041 8.840321 TGAAGGAGAAAGACATGAAAAAGTAAG 58.160 33.333 0.00 0.00 0.00 2.34
1927 2042 7.751768 AGGAGAAAGACATGAAAAAGTAAGG 57.248 36.000 0.00 0.00 0.00 2.69
1928 2043 6.717084 AGGAGAAAGACATGAAAAAGTAAGGG 59.283 38.462 0.00 0.00 0.00 3.95
1930 2045 6.610830 AGAAAGACATGAAAAAGTAAGGGGA 58.389 36.000 0.00 0.00 0.00 4.81
1931 2046 6.717084 AGAAAGACATGAAAAAGTAAGGGGAG 59.283 38.462 0.00 0.00 0.00 4.30
1933 2048 5.316987 AGACATGAAAAAGTAAGGGGAGTG 58.683 41.667 0.00 0.00 0.00 3.51
1934 2049 4.407365 ACATGAAAAAGTAAGGGGAGTGG 58.593 43.478 0.00 0.00 0.00 4.00
1935 2050 3.518992 TGAAAAAGTAAGGGGAGTGGG 57.481 47.619 0.00 0.00 0.00 4.61
1936 2051 2.168496 GAAAAAGTAAGGGGAGTGGGC 58.832 52.381 0.00 0.00 0.00 5.36
1937 2052 1.456919 AAAAGTAAGGGGAGTGGGCT 58.543 50.000 0.00 0.00 0.00 5.19
1938 2053 0.992695 AAAGTAAGGGGAGTGGGCTC 59.007 55.000 0.00 0.00 40.93 4.70
1939 2054 0.119358 AAGTAAGGGGAGTGGGCTCT 59.881 55.000 0.00 0.00 41.38 4.09
1940 2055 0.325765 AGTAAGGGGAGTGGGCTCTC 60.326 60.000 0.00 2.59 41.48 3.20
1941 2056 0.617820 GTAAGGGGAGTGGGCTCTCA 60.618 60.000 10.99 0.00 43.98 3.27
1942 2057 0.343372 TAAGGGGAGTGGGCTCTCAT 59.657 55.000 10.99 0.00 43.98 2.90
1943 2058 1.277580 AAGGGGAGTGGGCTCTCATG 61.278 60.000 10.99 0.00 43.98 3.07
1944 2059 2.191641 GGGAGTGGGCTCTCATGC 59.808 66.667 10.99 0.00 41.81 4.06
1945 2060 2.673200 GGGAGTGGGCTCTCATGCA 61.673 63.158 10.99 0.00 41.81 3.96
1946 2061 1.300963 GGAGTGGGCTCTCATGCAA 59.699 57.895 0.00 0.00 41.38 4.08
1947 2062 0.322816 GGAGTGGGCTCTCATGCAAA 60.323 55.000 0.00 0.00 41.38 3.68
1949 2064 1.471684 GAGTGGGCTCTCATGCAAAAG 59.528 52.381 0.00 0.00 38.66 2.27
1954 2069 0.172803 GCTCTCATGCAAAAGCCTGG 59.827 55.000 0.00 0.00 0.00 4.45
1955 2070 0.172803 CTCTCATGCAAAAGCCTGGC 59.827 55.000 11.65 11.65 0.00 4.85
1957 2072 1.004628 TCTCATGCAAAAGCCTGGCTA 59.995 47.619 23.69 6.02 38.25 3.93
1958 2073 2.029623 CTCATGCAAAAGCCTGGCTAT 58.970 47.619 23.69 11.54 38.25 2.97
1959 2074 3.117926 TCTCATGCAAAAGCCTGGCTATA 60.118 43.478 23.69 7.16 38.25 1.31
1960 2075 3.825014 CTCATGCAAAAGCCTGGCTATAT 59.175 43.478 23.69 8.74 38.25 0.86
1961 2076 3.570975 TCATGCAAAAGCCTGGCTATATG 59.429 43.478 23.69 20.53 38.25 1.78
1962 2077 3.017048 TGCAAAAGCCTGGCTATATGT 57.983 42.857 23.69 2.10 38.25 2.29
1963 2078 2.689471 TGCAAAAGCCTGGCTATATGTG 59.311 45.455 23.69 13.09 38.25 3.21
1964 2079 2.689983 GCAAAAGCCTGGCTATATGTGT 59.310 45.455 23.69 0.34 38.25 3.72
1965 2080 3.489738 GCAAAAGCCTGGCTATATGTGTG 60.490 47.826 23.69 12.31 38.25 3.82
1966 2081 1.972872 AAGCCTGGCTATATGTGTGC 58.027 50.000 23.69 0.00 38.25 4.57
1968 2083 1.071385 AGCCTGGCTATATGTGTGCTC 59.929 52.381 21.98 0.00 36.99 4.26
1969 2084 1.879796 GCCTGGCTATATGTGTGCTCC 60.880 57.143 12.43 0.00 0.00 4.70
1970 2085 1.417517 CCTGGCTATATGTGTGCTCCA 59.582 52.381 0.00 0.00 0.00 3.86
1972 2087 1.417517 TGGCTATATGTGTGCTCCAGG 59.582 52.381 0.00 0.00 0.00 4.45
1973 2088 1.271054 GGCTATATGTGTGCTCCAGGG 60.271 57.143 0.00 0.00 0.00 4.45
1974 2089 1.417890 GCTATATGTGTGCTCCAGGGT 59.582 52.381 0.00 0.00 0.00 4.34
1975 2090 2.632996 GCTATATGTGTGCTCCAGGGTA 59.367 50.000 0.00 0.00 0.00 3.69
1976 2091 3.306364 GCTATATGTGTGCTCCAGGGTAG 60.306 52.174 0.00 0.00 0.00 3.18
1978 2093 1.885049 ATGTGTGCTCCAGGGTAGAT 58.115 50.000 0.00 0.00 0.00 1.98
1980 2095 0.462759 GTGTGCTCCAGGGTAGATGC 60.463 60.000 0.00 0.00 0.00 3.91
1985 2100 2.777114 TGCTCCAGGGTAGATGCAATAA 59.223 45.455 0.00 0.00 0.00 1.40
1986 2101 3.201930 TGCTCCAGGGTAGATGCAATAAA 59.798 43.478 0.00 0.00 0.00 1.40
1987 2102 4.141181 TGCTCCAGGGTAGATGCAATAAAT 60.141 41.667 0.00 0.00 0.00 1.40
1989 2104 5.380043 CTCCAGGGTAGATGCAATAAATGT 58.620 41.667 0.00 0.00 0.00 2.71
1990 2105 5.132502 TCCAGGGTAGATGCAATAAATGTG 58.867 41.667 0.00 0.00 0.00 3.21
1991 2106 5.104151 TCCAGGGTAGATGCAATAAATGTGA 60.104 40.000 0.00 0.00 0.00 3.58
1992 2107 5.240183 CCAGGGTAGATGCAATAAATGTGAG 59.760 44.000 0.00 0.00 0.00 3.51
1993 2108 5.240183 CAGGGTAGATGCAATAAATGTGAGG 59.760 44.000 0.00 0.00 0.00 3.86
1994 2109 5.132648 AGGGTAGATGCAATAAATGTGAGGA 59.867 40.000 0.00 0.00 0.00 3.71
1998 2113 7.283127 GGTAGATGCAATAAATGTGAGGAAAGA 59.717 37.037 0.00 0.00 0.00 2.52
1999 2114 7.330900 AGATGCAATAAATGTGAGGAAAGAG 57.669 36.000 0.00 0.00 0.00 2.85
2000 2115 7.114754 AGATGCAATAAATGTGAGGAAAGAGA 58.885 34.615 0.00 0.00 0.00 3.10
2001 2116 6.500684 TGCAATAAATGTGAGGAAAGAGAC 57.499 37.500 0.00 0.00 0.00 3.36
2002 2117 6.003326 TGCAATAAATGTGAGGAAAGAGACA 58.997 36.000 0.00 0.00 0.00 3.41
2003 2118 6.149973 TGCAATAAATGTGAGGAAAGAGACAG 59.850 38.462 0.00 0.00 0.00 3.51
2004 2119 6.372659 GCAATAAATGTGAGGAAAGAGACAGA 59.627 38.462 0.00 0.00 0.00 3.41
2005 2120 7.413877 GCAATAAATGTGAGGAAAGAGACAGAG 60.414 40.741 0.00 0.00 0.00 3.35
2006 2121 5.815233 AAATGTGAGGAAAGAGACAGAGA 57.185 39.130 0.00 0.00 0.00 3.10
2007 2122 5.404466 AATGTGAGGAAAGAGACAGAGAG 57.596 43.478 0.00 0.00 0.00 3.20
2009 2124 4.474394 TGTGAGGAAAGAGACAGAGAGAA 58.526 43.478 0.00 0.00 0.00 2.87
2010 2125 4.522405 TGTGAGGAAAGAGACAGAGAGAAG 59.478 45.833 0.00 0.00 0.00 2.85
2013 2128 5.418524 TGAGGAAAGAGACAGAGAGAAGATG 59.581 44.000 0.00 0.00 0.00 2.90
2014 2129 5.579047 AGGAAAGAGACAGAGAGAAGATGA 58.421 41.667 0.00 0.00 0.00 2.92
2015 2130 5.653769 AGGAAAGAGACAGAGAGAAGATGAG 59.346 44.000 0.00 0.00 0.00 2.90
2016 2131 5.163519 GGAAAGAGACAGAGAGAAGATGAGG 60.164 48.000 0.00 0.00 0.00 3.86
2017 2132 4.860802 AGAGACAGAGAGAAGATGAGGA 57.139 45.455 0.00 0.00 0.00 3.71
2018 2133 5.191727 AGAGACAGAGAGAAGATGAGGAA 57.808 43.478 0.00 0.00 0.00 3.36
2019 2134 5.195940 AGAGACAGAGAGAAGATGAGGAAG 58.804 45.833 0.00 0.00 0.00 3.46
2021 2136 5.769835 AGACAGAGAGAAGATGAGGAAGAT 58.230 41.667 0.00 0.00 0.00 2.40
2023 2138 5.517924 ACAGAGAGAAGATGAGGAAGATGA 58.482 41.667 0.00 0.00 0.00 2.92
2024 2139 5.595542 ACAGAGAGAAGATGAGGAAGATGAG 59.404 44.000 0.00 0.00 0.00 2.90
2026 2141 5.595542 AGAGAGAAGATGAGGAAGATGAGTG 59.404 44.000 0.00 0.00 0.00 3.51
2027 2142 5.517924 AGAGAAGATGAGGAAGATGAGTGA 58.482 41.667 0.00 0.00 0.00 3.41
2028 2143 5.360714 AGAGAAGATGAGGAAGATGAGTGAC 59.639 44.000 0.00 0.00 0.00 3.67
2029 2144 5.271598 AGAAGATGAGGAAGATGAGTGACT 58.728 41.667 0.00 0.00 0.00 3.41
2030 2145 6.430864 AGAAGATGAGGAAGATGAGTGACTA 58.569 40.000 0.00 0.00 0.00 2.59
2033 2148 7.759489 AGATGAGGAAGATGAGTGACTATAC 57.241 40.000 0.00 0.00 0.00 1.47
2034 2149 6.429692 AGATGAGGAAGATGAGTGACTATACG 59.570 42.308 0.00 0.00 0.00 3.06
2036 2151 5.297029 TGAGGAAGATGAGTGACTATACGTG 59.703 44.000 0.00 0.00 0.00 4.49
2039 2154 5.744345 GGAAGATGAGTGACTATACGTGTTG 59.256 44.000 0.00 0.00 0.00 3.33
2040 2155 6.404403 GGAAGATGAGTGACTATACGTGTTGA 60.404 42.308 0.00 0.00 0.00 3.18
2041 2156 5.881447 AGATGAGTGACTATACGTGTTGAC 58.119 41.667 0.00 0.00 0.00 3.18
2043 2158 6.822170 AGATGAGTGACTATACGTGTTGACTA 59.178 38.462 0.00 0.00 0.00 2.59
2044 2159 6.997239 TGAGTGACTATACGTGTTGACTAT 57.003 37.500 0.00 0.00 0.00 2.12
2045 2160 6.782150 TGAGTGACTATACGTGTTGACTATG 58.218 40.000 0.00 0.00 0.00 2.23
2046 2161 6.596497 TGAGTGACTATACGTGTTGACTATGA 59.404 38.462 0.00 0.00 0.00 2.15
2047 2162 7.120138 TGAGTGACTATACGTGTTGACTATGAA 59.880 37.037 0.00 0.00 0.00 2.57
2048 2163 7.997482 AGTGACTATACGTGTTGACTATGAAT 58.003 34.615 0.00 0.00 0.00 2.57
2049 2164 7.915923 AGTGACTATACGTGTTGACTATGAATG 59.084 37.037 0.00 0.00 0.00 2.67
2050 2165 7.913821 GTGACTATACGTGTTGACTATGAATGA 59.086 37.037 0.00 0.00 0.00 2.57
2051 2166 8.630037 TGACTATACGTGTTGACTATGAATGAT 58.370 33.333 0.00 0.00 0.00 2.45
2056 2171 7.899178 ACGTGTTGACTATGAATGATAAACA 57.101 32.000 0.00 0.00 0.00 2.83
2058 2173 8.604035 ACGTGTTGACTATGAATGATAAACATC 58.396 33.333 0.00 0.00 38.38 3.06
2059 2174 8.820933 CGTGTTGACTATGAATGATAAACATCT 58.179 33.333 0.00 0.00 38.38 2.90
2070 2185 9.196552 TGAATGATAAACATCTTATAGTCAGCG 57.803 33.333 0.00 0.00 38.38 5.18
2071 2186 8.539770 AATGATAAACATCTTATAGTCAGCGG 57.460 34.615 0.00 0.00 38.38 5.52
2072 2187 7.050970 TGATAAACATCTTATAGTCAGCGGT 57.949 36.000 0.00 0.00 0.00 5.68
2073 2188 7.497595 TGATAAACATCTTATAGTCAGCGGTT 58.502 34.615 0.00 0.00 0.00 4.44
2074 2189 7.438160 TGATAAACATCTTATAGTCAGCGGTTG 59.562 37.037 0.00 0.00 0.00 3.77
2077 2192 4.081087 ACATCTTATAGTCAGCGGTTGGTT 60.081 41.667 0.00 0.00 0.00 3.67
2078 2193 3.857052 TCTTATAGTCAGCGGTTGGTTG 58.143 45.455 0.00 0.00 0.00 3.77
2079 2194 3.259876 TCTTATAGTCAGCGGTTGGTTGT 59.740 43.478 0.00 0.00 0.00 3.32
2080 2195 4.463539 TCTTATAGTCAGCGGTTGGTTGTA 59.536 41.667 0.00 0.00 0.00 2.41
2081 2196 3.906720 ATAGTCAGCGGTTGGTTGTAT 57.093 42.857 0.00 0.00 0.00 2.29
2082 2197 2.561478 AGTCAGCGGTTGGTTGTATT 57.439 45.000 0.00 0.00 0.00 1.89
2083 2198 3.688694 AGTCAGCGGTTGGTTGTATTA 57.311 42.857 0.00 0.00 0.00 0.98
2084 2199 4.216411 AGTCAGCGGTTGGTTGTATTAT 57.784 40.909 0.00 0.00 0.00 1.28
2085 2200 4.585879 AGTCAGCGGTTGGTTGTATTATT 58.414 39.130 0.00 0.00 0.00 1.40
2086 2201 5.736813 AGTCAGCGGTTGGTTGTATTATTA 58.263 37.500 0.00 0.00 0.00 0.98
2087 2202 6.174760 AGTCAGCGGTTGGTTGTATTATTAA 58.825 36.000 0.00 0.00 0.00 1.40
2088 2203 6.093082 AGTCAGCGGTTGGTTGTATTATTAAC 59.907 38.462 0.00 0.00 0.00 2.01
2089 2204 5.354792 TCAGCGGTTGGTTGTATTATTAACC 59.645 40.000 0.00 0.00 45.15 2.85
2143 2265 6.936335 TCATGATGCTTTACATACGGAATGAT 59.064 34.615 6.98 0.00 39.84 2.45
2165 2824 5.512942 TTGACCAATCAAGATCCAGGTTA 57.487 39.130 0.00 0.00 40.01 2.85
2166 2825 5.512942 TGACCAATCAAGATCCAGGTTAA 57.487 39.130 0.00 0.00 0.00 2.01
2547 3231 6.991485 ACAAAATGTCATCATTGAACGAAC 57.009 33.333 14.83 0.00 42.60 3.95
2884 5762 4.330074 AGTGAGCCGAAAGATAATTTGTCG 59.670 41.667 0.00 0.00 0.00 4.35
2933 5814 4.976116 GCCATGTAATTTGTTATCCGAAGC 59.024 41.667 0.00 0.00 0.00 3.86
2961 5842 2.276740 CAGGGTCAATCAGCCCCC 59.723 66.667 0.00 0.00 45.95 5.40
2974 5855 0.769247 AGCCCCCTGTTACGTTTCTT 59.231 50.000 0.00 0.00 0.00 2.52
2977 5858 3.148412 GCCCCCTGTTACGTTTCTTTTA 58.852 45.455 0.00 0.00 0.00 1.52
2979 5860 4.380128 GCCCCCTGTTACGTTTCTTTTATG 60.380 45.833 0.00 0.00 0.00 1.90
2980 5861 4.157105 CCCCCTGTTACGTTTCTTTTATGG 59.843 45.833 0.00 0.00 0.00 2.74
2982 5863 5.939296 CCCCTGTTACGTTTCTTTTATGGTA 59.061 40.000 0.00 0.00 0.00 3.25
3044 5925 6.014242 TGTGTTCAGGTCAGACATCTTATTCT 60.014 38.462 2.17 0.00 0.00 2.40
3079 5960 5.113502 AGATTTCTTTGGAGCTTTGTTCG 57.886 39.130 0.00 0.00 0.00 3.95
3087 5968 2.062519 GGAGCTTTGTTCGTGAGTCTC 58.937 52.381 0.00 0.00 0.00 3.36
3088 5969 2.288518 GGAGCTTTGTTCGTGAGTCTCT 60.289 50.000 0.65 0.00 0.00 3.10
3089 5970 2.728839 GAGCTTTGTTCGTGAGTCTCTG 59.271 50.000 0.65 0.00 0.00 3.35
3090 5971 1.795286 GCTTTGTTCGTGAGTCTCTGG 59.205 52.381 0.65 0.00 0.00 3.86
3091 5972 2.408050 CTTTGTTCGTGAGTCTCTGGG 58.592 52.381 0.65 0.00 0.00 4.45
3092 5973 0.679505 TTGTTCGTGAGTCTCTGGGG 59.320 55.000 0.65 0.00 0.00 4.96
3093 5974 1.079750 GTTCGTGAGTCTCTGGGGC 60.080 63.158 0.65 0.00 0.00 5.80
3151 6032 6.882678 GGCTAGATTTACAGGAAACTACCAAA 59.117 38.462 0.00 0.00 40.21 3.28
3218 6099 2.192624 CAAAAAGCACTGAACAACCGG 58.807 47.619 0.00 0.00 0.00 5.28
3253 6134 0.396811 CTCTTTTCCGACAGGTGGGT 59.603 55.000 0.29 0.00 39.05 4.51
3343 6224 2.738480 CCGGTCGGTCCTTGTCAA 59.262 61.111 0.55 0.00 0.00 3.18
3344 6225 1.374252 CCGGTCGGTCCTTGTCAAG 60.374 63.158 5.53 5.53 0.00 3.02
3345 6226 1.663739 CGGTCGGTCCTTGTCAAGA 59.336 57.895 14.42 0.00 0.00 3.02
3346 6227 0.666577 CGGTCGGTCCTTGTCAAGAC 60.667 60.000 14.42 9.78 0.00 3.01
3348 6229 1.605712 GGTCGGTCCTTGTCAAGACAG 60.606 57.143 14.42 10.54 42.94 3.51
3533 6425 1.883021 CGGCAGTTCAAACCCATCC 59.117 57.895 0.00 0.00 0.00 3.51
3591 6483 2.732094 GTGTTGAGTACGCGGCGT 60.732 61.111 31.64 31.64 44.35 5.68
3700 6592 0.691904 TTCCGTACCCCGATTTGGTT 59.308 50.000 0.00 0.00 39.56 3.67
3701 6593 0.691904 TCCGTACCCCGATTTGGTTT 59.308 50.000 0.00 0.00 39.56 3.27
3702 6594 1.089112 CCGTACCCCGATTTGGTTTC 58.911 55.000 0.00 0.00 39.56 2.78
3703 6595 1.339342 CCGTACCCCGATTTGGTTTCT 60.339 52.381 0.00 0.00 39.56 2.52
3704 6596 2.093553 CCGTACCCCGATTTGGTTTCTA 60.094 50.000 0.00 0.00 39.56 2.10
3705 6597 3.192466 CGTACCCCGATTTGGTTTCTAG 58.808 50.000 0.00 0.00 39.56 2.43
3706 6598 2.801077 ACCCCGATTTGGTTTCTAGG 57.199 50.000 0.00 0.00 35.15 3.02
3707 6599 1.283905 ACCCCGATTTGGTTTCTAGGG 59.716 52.381 0.00 0.00 39.33 3.53
3708 6600 1.283905 CCCCGATTTGGTTTCTAGGGT 59.716 52.381 0.00 0.00 35.75 4.34
3709 6601 2.291346 CCCCGATTTGGTTTCTAGGGTT 60.291 50.000 0.00 0.00 35.75 4.11
3710 6602 3.054213 CCCCGATTTGGTTTCTAGGGTTA 60.054 47.826 0.00 0.00 35.75 2.85
3711 6603 4.196971 CCCGATTTGGTTTCTAGGGTTAG 58.803 47.826 0.00 0.00 35.15 2.34
3712 6604 4.196971 CCGATTTGGTTTCTAGGGTTAGG 58.803 47.826 0.00 0.00 0.00 2.69
3713 6605 4.196971 CGATTTGGTTTCTAGGGTTAGGG 58.803 47.826 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.569641 AGGCCGCATAATCGTTTTTATTTAATA 58.430 29.630 0.00 0.00 0.00 0.98
9 10 7.430441 AGGCCGCATAATCGTTTTTATTTAAT 58.570 30.769 0.00 0.00 0.00 1.40
11 12 6.380095 AGGCCGCATAATCGTTTTTATTTA 57.620 33.333 0.00 0.00 0.00 1.40
12 13 5.257082 AGGCCGCATAATCGTTTTTATTT 57.743 34.783 0.00 0.00 0.00 1.40
13 14 4.911514 AGGCCGCATAATCGTTTTTATT 57.088 36.364 0.00 0.00 0.00 1.40
17 18 2.634600 TGTAGGCCGCATAATCGTTTT 58.365 42.857 0.00 0.00 0.00 2.43
19 20 2.413837 GATGTAGGCCGCATAATCGTT 58.586 47.619 14.40 0.00 0.00 3.85
20 21 1.668919 CGATGTAGGCCGCATAATCGT 60.669 52.381 14.40 0.00 33.92 3.73
21 22 0.992072 CGATGTAGGCCGCATAATCG 59.008 55.000 14.40 13.41 0.00 3.34
22 23 2.363788 TCGATGTAGGCCGCATAATC 57.636 50.000 14.40 6.40 0.00 1.75
24 25 1.067142 GGATCGATGTAGGCCGCATAA 60.067 52.381 14.40 7.76 0.00 1.90
25 26 0.530744 GGATCGATGTAGGCCGCATA 59.469 55.000 14.40 2.75 0.00 3.14
27 28 2.734591 GGATCGATGTAGGCCGCA 59.265 61.111 0.54 0.22 0.00 5.69
29 30 1.006102 GTGGGATCGATGTAGGCCG 60.006 63.158 0.54 0.00 0.00 6.13
31 32 1.620819 AGATGTGGGATCGATGTAGGC 59.379 52.381 0.54 0.00 0.00 3.93
32 33 4.142071 CCATAGATGTGGGATCGATGTAGG 60.142 50.000 0.54 0.00 35.55 3.18
33 34 4.706962 TCCATAGATGTGGGATCGATGTAG 59.293 45.833 0.54 0.00 39.80 2.74
34 35 4.462834 GTCCATAGATGTGGGATCGATGTA 59.537 45.833 0.54 0.00 39.80 2.29
35 36 3.259374 GTCCATAGATGTGGGATCGATGT 59.741 47.826 0.54 0.00 39.80 3.06
36 37 3.513119 AGTCCATAGATGTGGGATCGATG 59.487 47.826 0.54 0.00 39.80 3.84
37 38 3.784178 AGTCCATAGATGTGGGATCGAT 58.216 45.455 0.00 0.00 39.80 3.59
39 40 3.826729 TGTAGTCCATAGATGTGGGATCG 59.173 47.826 0.00 0.00 39.80 3.69
40 41 5.808366 TTGTAGTCCATAGATGTGGGATC 57.192 43.478 0.00 0.00 39.80 3.36
42 43 5.780282 CCTATTGTAGTCCATAGATGTGGGA 59.220 44.000 0.00 0.00 39.80 4.37
44 45 5.247110 AGCCTATTGTAGTCCATAGATGTGG 59.753 44.000 0.00 0.00 40.76 4.17
47 48 7.414651 CGTCTAGCCTATTGTAGTCCATAGATG 60.415 44.444 0.00 0.00 0.00 2.90
48 49 6.600032 CGTCTAGCCTATTGTAGTCCATAGAT 59.400 42.308 0.00 0.00 0.00 1.98
49 50 5.938710 CGTCTAGCCTATTGTAGTCCATAGA 59.061 44.000 0.00 0.00 0.00 1.98
50 51 5.706369 ACGTCTAGCCTATTGTAGTCCATAG 59.294 44.000 0.00 0.00 0.00 2.23
51 52 5.472478 CACGTCTAGCCTATTGTAGTCCATA 59.528 44.000 0.00 0.00 0.00 2.74
52 53 4.278669 CACGTCTAGCCTATTGTAGTCCAT 59.721 45.833 0.00 0.00 0.00 3.41
55 56 4.023878 CCTCACGTCTAGCCTATTGTAGTC 60.024 50.000 0.00 0.00 0.00 2.59
56 57 3.884091 CCTCACGTCTAGCCTATTGTAGT 59.116 47.826 0.00 0.00 0.00 2.73
57 58 3.253677 CCCTCACGTCTAGCCTATTGTAG 59.746 52.174 0.00 0.00 0.00 2.74
58 59 3.220110 CCCTCACGTCTAGCCTATTGTA 58.780 50.000 0.00 0.00 0.00 2.41
60 61 1.341531 CCCCTCACGTCTAGCCTATTG 59.658 57.143 0.00 0.00 0.00 1.90
61 62 1.705873 CCCCTCACGTCTAGCCTATT 58.294 55.000 0.00 0.00 0.00 1.73
62 63 0.178958 CCCCCTCACGTCTAGCCTAT 60.179 60.000 0.00 0.00 0.00 2.57
63 64 1.229359 CCCCCTCACGTCTAGCCTA 59.771 63.158 0.00 0.00 0.00 3.93
64 65 2.042843 CCCCCTCACGTCTAGCCT 60.043 66.667 0.00 0.00 0.00 4.58
65 66 2.043248 TCCCCCTCACGTCTAGCC 60.043 66.667 0.00 0.00 0.00 3.93
66 67 1.380112 ACTCCCCCTCACGTCTAGC 60.380 63.158 0.00 0.00 0.00 3.42
69 70 1.152312 AACACTCCCCCTCACGTCT 60.152 57.895 0.00 0.00 0.00 4.18
71 72 1.052124 TTCAACACTCCCCCTCACGT 61.052 55.000 0.00 0.00 0.00 4.49
73 74 2.586648 ATTTCAACACTCCCCCTCAC 57.413 50.000 0.00 0.00 0.00 3.51
74 75 6.364701 CAATATATTTCAACACTCCCCCTCA 58.635 40.000 0.00 0.00 0.00 3.86
76 77 5.140454 GCAATATATTTCAACACTCCCCCT 58.860 41.667 0.00 0.00 0.00 4.79
77 78 4.280929 GGCAATATATTTCAACACTCCCCC 59.719 45.833 0.00 0.00 0.00 5.40
78 79 4.280929 GGGCAATATATTTCAACACTCCCC 59.719 45.833 0.00 0.00 0.00 4.81
79 80 4.023193 CGGGCAATATATTTCAACACTCCC 60.023 45.833 0.00 0.00 0.00 4.30
83 84 3.317993 AGGCGGGCAATATATTTCAACAC 59.682 43.478 3.78 0.00 0.00 3.32
84 85 3.561143 AGGCGGGCAATATATTTCAACA 58.439 40.909 3.78 0.00 0.00 3.33
85 86 3.057526 GGAGGCGGGCAATATATTTCAAC 60.058 47.826 3.78 0.00 0.00 3.18
86 87 3.153919 GGAGGCGGGCAATATATTTCAA 58.846 45.455 3.78 0.00 0.00 2.69
87 88 2.375174 AGGAGGCGGGCAATATATTTCA 59.625 45.455 3.78 0.00 0.00 2.69
88 89 3.073274 AGGAGGCGGGCAATATATTTC 57.927 47.619 3.78 0.00 0.00 2.17
90 91 3.181434 TGAAAGGAGGCGGGCAATATATT 60.181 43.478 3.78 0.00 0.00 1.28
91 92 2.375174 TGAAAGGAGGCGGGCAATATAT 59.625 45.455 3.78 0.00 0.00 0.86
92 93 1.771854 TGAAAGGAGGCGGGCAATATA 59.228 47.619 3.78 0.00 0.00 0.86
93 94 0.550914 TGAAAGGAGGCGGGCAATAT 59.449 50.000 3.78 0.00 0.00 1.28
94 95 0.550914 ATGAAAGGAGGCGGGCAATA 59.449 50.000 3.78 0.00 0.00 1.90
96 97 1.378514 GATGAAAGGAGGCGGGCAA 60.379 57.895 3.78 0.00 0.00 4.52
97 98 2.272146 GATGAAAGGAGGCGGGCA 59.728 61.111 3.78 0.00 0.00 5.36
98 99 1.821332 CTGATGAAAGGAGGCGGGC 60.821 63.158 0.00 0.00 0.00 6.13
100 101 1.373570 GAACTGATGAAAGGAGGCGG 58.626 55.000 0.00 0.00 0.00 6.13
101 102 1.002366 CGAACTGATGAAAGGAGGCG 58.998 55.000 0.00 0.00 0.00 5.52
103 104 2.234908 AGTCCGAACTGATGAAAGGAGG 59.765 50.000 0.00 0.00 33.32 4.30
104 105 3.601443 AGTCCGAACTGATGAAAGGAG 57.399 47.619 0.00 0.00 33.32 3.69
105 106 4.351874 AAAGTCCGAACTGATGAAAGGA 57.648 40.909 0.00 0.00 35.36 3.36
106 107 4.787598 CAAAAGTCCGAACTGATGAAAGG 58.212 43.478 0.00 0.00 35.36 3.11
107 108 4.222114 GCAAAAGTCCGAACTGATGAAAG 58.778 43.478 0.00 0.00 35.36 2.62
108 109 3.629855 TGCAAAAGTCCGAACTGATGAAA 59.370 39.130 0.00 0.00 35.36 2.69
110 111 2.807967 CTGCAAAAGTCCGAACTGATGA 59.192 45.455 0.00 0.00 35.36 2.92
112 113 1.537202 GCTGCAAAAGTCCGAACTGAT 59.463 47.619 0.00 0.00 35.36 2.90
113 114 0.944386 GCTGCAAAAGTCCGAACTGA 59.056 50.000 0.00 0.00 35.36 3.41
115 116 1.065551 GTTGCTGCAAAAGTCCGAACT 59.934 47.619 17.80 0.00 37.32 3.01
116 117 1.065551 AGTTGCTGCAAAAGTCCGAAC 59.934 47.619 17.80 1.69 0.00 3.95
119 120 0.318107 CCAGTTGCTGCAAAAGTCCG 60.318 55.000 17.80 2.20 0.00 4.79
120 121 0.032540 CCCAGTTGCTGCAAAAGTCC 59.967 55.000 17.80 4.16 0.00 3.85
121 122 0.746659 ACCCAGTTGCTGCAAAAGTC 59.253 50.000 17.80 4.56 0.00 3.01
122 123 1.956477 CTACCCAGTTGCTGCAAAAGT 59.044 47.619 17.80 13.63 0.00 2.66
124 125 2.229792 CTCTACCCAGTTGCTGCAAAA 58.770 47.619 17.80 0.00 0.00 2.44
125 126 1.896220 CTCTACCCAGTTGCTGCAAA 58.104 50.000 17.80 0.00 0.00 3.68
126 127 0.606401 GCTCTACCCAGTTGCTGCAA 60.606 55.000 11.69 11.69 0.00 4.08
127 128 1.003355 GCTCTACCCAGTTGCTGCA 60.003 57.895 0.00 0.00 0.00 4.41
128 129 0.393537 ATGCTCTACCCAGTTGCTGC 60.394 55.000 0.00 0.00 0.00 5.25
129 130 1.065926 TCATGCTCTACCCAGTTGCTG 60.066 52.381 0.00 0.00 0.00 4.41
131 132 2.113860 TTCATGCTCTACCCAGTTGC 57.886 50.000 0.00 0.00 0.00 4.17
134 135 4.574674 TTGAATTCATGCTCTACCCAGT 57.425 40.909 9.40 0.00 0.00 4.00
135 136 6.543465 TGTTATTGAATTCATGCTCTACCCAG 59.457 38.462 9.40 0.00 0.00 4.45
136 137 6.422333 TGTTATTGAATTCATGCTCTACCCA 58.578 36.000 9.40 0.00 0.00 4.51
137 138 6.942532 TGTTATTGAATTCATGCTCTACCC 57.057 37.500 9.40 0.00 0.00 3.69
141 142 8.743085 ACTACATGTTATTGAATTCATGCTCT 57.257 30.769 9.40 6.48 40.57 4.09
143 144 8.959548 TGAACTACATGTTATTGAATTCATGCT 58.040 29.630 9.40 0.08 40.57 3.79
193 194 7.732222 TTAGGCATTAAATGGATTTCTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
225 226 8.156165 AGTTTGGCATTTTTCTGGATTCAATTA 58.844 29.630 0.00 0.00 0.00 1.40
228 229 5.927819 AGTTTGGCATTTTTCTGGATTCAA 58.072 33.333 0.00 0.00 0.00 2.69
230 231 6.482973 TCAAAGTTTGGCATTTTTCTGGATTC 59.517 34.615 15.47 0.00 0.00 2.52
262 263 6.855836 ACATTGAACATACAACATTAGGCTG 58.144 36.000 0.00 0.00 32.50 4.85
288 289 7.331026 TGATCCAGGACACTCTAAACTTTATG 58.669 38.462 0.00 0.00 0.00 1.90
291 292 5.825593 TGATCCAGGACACTCTAAACTTT 57.174 39.130 0.00 0.00 0.00 2.66
298 299 7.682787 ATAAGTTATTGATCCAGGACACTCT 57.317 36.000 0.00 0.00 0.00 3.24
313 314 9.595823 ACTATGTGAAGTGCGTTATAAGTTATT 57.404 29.630 0.00 0.00 0.00 1.40
318 319 6.757010 AGGAACTATGTGAAGTGCGTTATAAG 59.243 38.462 0.00 0.00 36.02 1.73
321 322 5.086104 AGGAACTATGTGAAGTGCGTTAT 57.914 39.130 0.00 0.00 36.02 1.89
322 323 4.530710 AGGAACTATGTGAAGTGCGTTA 57.469 40.909 0.00 0.00 36.02 3.18
326 327 7.029563 CCAAATTAAGGAACTATGTGAAGTGC 58.970 38.462 0.00 0.00 38.49 4.40
329 330 8.110860 ACACCAAATTAAGGAACTATGTGAAG 57.889 34.615 4.01 0.00 38.49 3.02
337 338 9.679661 ATTTTTGAAACACCAAATTAAGGAACT 57.320 25.926 4.01 0.00 36.59 3.01
351 352 8.756864 TGCCTATTTTTCGTATTTTTGAAACAC 58.243 29.630 0.00 0.00 34.07 3.32
372 373 2.309528 AATCAAACGATCGCTGCCTA 57.690 45.000 16.60 0.00 0.00 3.93
374 375 1.135689 ACAAATCAAACGATCGCTGCC 60.136 47.619 16.60 0.00 0.00 4.85
375 376 2.247311 ACAAATCAAACGATCGCTGC 57.753 45.000 16.60 0.00 0.00 5.25
379 380 5.231357 TCGAATCCTACAAATCAAACGATCG 59.769 40.000 14.88 14.88 0.00 3.69
380 381 6.583912 TCGAATCCTACAAATCAAACGATC 57.416 37.500 0.00 0.00 0.00 3.69
381 382 6.183360 GGTTCGAATCCTACAAATCAAACGAT 60.183 38.462 0.00 0.00 0.00 3.73
382 383 5.121142 GGTTCGAATCCTACAAATCAAACGA 59.879 40.000 0.00 0.00 0.00 3.85
384 385 5.414765 AGGGTTCGAATCCTACAAATCAAAC 59.585 40.000 28.69 0.00 37.89 2.93
395 398 2.182516 ATCCTGAGGGTTCGAATCCT 57.817 50.000 30.06 30.06 43.90 3.24
401 404 1.084370 GCGTGAATCCTGAGGGTTCG 61.084 60.000 18.92 10.32 0.00 3.95
417 420 4.038642 ACATGAAACACCAAATTAAGGCGT 59.961 37.500 0.00 0.00 0.00 5.68
440 443 3.025322 TCTTTGAACAAAAGGAGCCCA 57.975 42.857 1.76 0.00 44.69 5.36
501 504 8.365399 ACGAATCAAACGATGTACATATGAAT 57.635 30.769 8.71 4.74 34.70 2.57
502 505 7.764695 ACGAATCAAACGATGTACATATGAA 57.235 32.000 8.71 0.00 34.70 2.57
504 507 7.593644 TCCTACGAATCAAACGATGTACATATG 59.406 37.037 8.71 7.18 34.70 1.78
505 508 7.654568 TCCTACGAATCAAACGATGTACATAT 58.345 34.615 8.71 0.00 34.70 1.78
506 509 7.030075 TCCTACGAATCAAACGATGTACATA 57.970 36.000 8.71 0.00 34.70 2.29
540 549 2.496871 TCAAAATAGTGCAATGCCTGGG 59.503 45.455 1.53 0.00 0.00 4.45
542 551 4.989797 TGTTTCAAAATAGTGCAATGCCTG 59.010 37.500 1.53 0.00 0.00 4.85
543 552 5.212532 TGTTTCAAAATAGTGCAATGCCT 57.787 34.783 1.53 1.90 0.00 4.75
560 588 8.845942 AGTATTACAAAAACGAGGTTTGTTTC 57.154 30.769 16.66 8.58 44.73 2.78
561 589 9.642327 AAAGTATTACAAAAACGAGGTTTGTTT 57.358 25.926 16.66 10.24 44.73 2.83
571 599 8.051329 CGGGAAAAACAAAGTATTACAAAAACG 58.949 33.333 0.00 0.00 0.00 3.60
572 600 8.871862 ACGGGAAAAACAAAGTATTACAAAAAC 58.128 29.630 0.00 0.00 0.00 2.43
578 606 7.364970 ACATGACGGGAAAAACAAAGTATTAC 58.635 34.615 0.00 0.00 0.00 1.89
596 627 1.069022 CAAAGGGTGCTTGACATGACG 60.069 52.381 0.00 0.00 0.00 4.35
599 630 2.608752 GCTTCAAAGGGTGCTTGACATG 60.609 50.000 0.00 0.00 32.61 3.21
604 635 2.600470 TTTGCTTCAAAGGGTGCTTG 57.400 45.000 0.00 0.00 0.00 4.01
631 662 6.045106 TCCTAATCCTATATGGTTGGGAAACC 59.955 42.308 4.00 0.53 44.22 3.27
636 667 7.270832 TGAATCCTAATCCTATATGGTTGGG 57.729 40.000 0.00 0.00 37.07 4.12
647 678 5.934402 ACGTAGTGTTGAATCCTAATCCT 57.066 39.130 0.00 0.00 42.51 3.24
655 686 8.423215 GTTTAGAGTGTTACGTAGTGTTGAATC 58.577 37.037 0.00 0.00 45.73 2.52
695 726 5.615925 AAACAGGCCACTAGTAGGAATAG 57.384 43.478 5.01 4.63 0.00 1.73
699 730 2.290071 GCAAAACAGGCCACTAGTAGGA 60.290 50.000 5.01 0.00 0.00 2.94
700 731 2.084546 GCAAAACAGGCCACTAGTAGG 58.915 52.381 5.01 0.70 0.00 3.18
701 732 2.778299 TGCAAAACAGGCCACTAGTAG 58.222 47.619 5.01 0.00 0.00 2.57
703 734 2.065899 TTGCAAAACAGGCCACTAGT 57.934 45.000 5.01 0.00 0.00 2.57
817 862 0.029834 GCCAATGCCGCATCTTGTAG 59.970 55.000 6.27 0.00 0.00 2.74
877 923 5.181245 GCTACTCTGCTTATCTCTACCTGAG 59.819 48.000 0.00 0.00 43.96 3.35
1305 1381 2.338500 GCCTGAACTGGTACTTTCTCG 58.662 52.381 0.00 0.00 0.00 4.04
1311 1387 1.204941 GTCATCGCCTGAACTGGTACT 59.795 52.381 0.00 0.00 35.07 2.73
1321 1401 4.618912 CGAAGAACATATAGTCATCGCCTG 59.381 45.833 1.11 0.00 0.00 4.85
1322 1402 4.278669 ACGAAGAACATATAGTCATCGCCT 59.721 41.667 10.61 0.00 34.69 5.52
1323 1403 4.383052 CACGAAGAACATATAGTCATCGCC 59.617 45.833 10.61 0.00 34.69 5.54
1324 1404 4.383052 CCACGAAGAACATATAGTCATCGC 59.617 45.833 10.61 0.00 34.69 4.58
1343 1428 1.576421 GTTTTCAGCTGCTCCCACG 59.424 57.895 9.47 0.00 0.00 4.94
1455 1544 1.279271 CCTCTCATGGAAGAAACCGGT 59.721 52.381 0.00 0.00 0.00 5.28
1664 1779 4.450419 GCACTCTGGATGCAAGATACATAC 59.550 45.833 0.00 0.00 42.88 2.39
1665 1780 4.635223 GCACTCTGGATGCAAGATACATA 58.365 43.478 0.00 0.00 42.88 2.29
1693 1808 3.381272 AGAAGAGAGATCTGCCGAAGAAG 59.619 47.826 0.00 0.00 38.79 2.85
1708 1823 2.704190 ACTCTCCCACCAAGAAGAGA 57.296 50.000 5.31 0.00 34.34 3.10
1790 1905 1.359848 GTTGCGACGACATCTGGAAT 58.640 50.000 0.00 0.00 0.00 3.01
1839 1954 6.102663 CACTATTGTAGTTGCTCTAACAGCT 58.897 40.000 0.00 0.00 42.46 4.24
1840 1955 5.292101 CCACTATTGTAGTTGCTCTAACAGC 59.708 44.000 0.00 0.00 42.38 4.40
1841 1956 5.812642 CCCACTATTGTAGTTGCTCTAACAG 59.187 44.000 0.00 0.00 41.88 3.16
1842 1957 5.730550 CCCACTATTGTAGTTGCTCTAACA 58.269 41.667 0.00 0.00 41.88 2.41
1843 1958 4.571176 GCCCACTATTGTAGTTGCTCTAAC 59.429 45.833 0.00 0.00 36.76 2.34
1845 1960 3.181479 CGCCCACTATTGTAGTTGCTCTA 60.181 47.826 6.76 0.00 36.76 2.43
1846 1961 2.418746 CGCCCACTATTGTAGTTGCTCT 60.419 50.000 6.76 0.00 36.76 4.09
1847 1962 1.933853 CGCCCACTATTGTAGTTGCTC 59.066 52.381 6.76 0.00 36.76 4.26
1849 1964 1.734163 ACGCCCACTATTGTAGTTGC 58.266 50.000 0.00 0.00 36.76 4.17
1850 1965 4.684703 GCTATACGCCCACTATTGTAGTTG 59.315 45.833 0.00 0.00 36.76 3.16
1851 1966 4.879598 GCTATACGCCCACTATTGTAGTT 58.120 43.478 0.00 0.00 36.76 2.24
1852 1967 4.516365 GCTATACGCCCACTATTGTAGT 57.484 45.455 0.00 0.00 40.28 2.73
1865 1980 3.936372 TCATGGAAGTAGGCTATACGC 57.064 47.619 0.00 0.00 38.13 4.42
1866 1981 9.436957 AAAATTATCATGGAAGTAGGCTATACG 57.563 33.333 0.00 0.00 0.00 3.06
1869 1984 7.946776 AGCAAAATTATCATGGAAGTAGGCTAT 59.053 33.333 0.00 0.00 0.00 2.97
1870 1985 7.290061 AGCAAAATTATCATGGAAGTAGGCTA 58.710 34.615 0.00 0.00 0.00 3.93
1871 1986 6.131961 AGCAAAATTATCATGGAAGTAGGCT 58.868 36.000 0.00 0.00 0.00 4.58
1872 1987 6.396829 AGCAAAATTATCATGGAAGTAGGC 57.603 37.500 0.00 0.00 0.00 3.93
1873 1988 9.903682 CATAAGCAAAATTATCATGGAAGTAGG 57.096 33.333 0.00 0.00 0.00 3.18
1876 1991 8.970020 TCACATAAGCAAAATTATCATGGAAGT 58.030 29.630 0.00 0.00 0.00 3.01
1877 1992 9.806203 TTCACATAAGCAAAATTATCATGGAAG 57.194 29.630 0.00 0.00 0.00 3.46
1878 1993 9.806203 CTTCACATAAGCAAAATTATCATGGAA 57.194 29.630 0.00 0.00 0.00 3.53
1879 1994 8.415553 CCTTCACATAAGCAAAATTATCATGGA 58.584 33.333 0.00 0.00 0.00 3.41
1880 1995 8.415553 TCCTTCACATAAGCAAAATTATCATGG 58.584 33.333 0.00 0.00 0.00 3.66
1881 1996 9.459640 CTCCTTCACATAAGCAAAATTATCATG 57.540 33.333 0.00 0.00 0.00 3.07
1886 2001 9.295825 TCTTTCTCCTTCACATAAGCAAAATTA 57.704 29.630 0.00 0.00 0.00 1.40
1887 2002 8.084684 GTCTTTCTCCTTCACATAAGCAAAATT 58.915 33.333 0.00 0.00 0.00 1.82
1888 2003 7.231317 TGTCTTTCTCCTTCACATAAGCAAAAT 59.769 33.333 0.00 0.00 0.00 1.82
1889 2004 6.545666 TGTCTTTCTCCTTCACATAAGCAAAA 59.454 34.615 0.00 0.00 0.00 2.44
1892 2007 5.227569 TGTCTTTCTCCTTCACATAAGCA 57.772 39.130 0.00 0.00 0.00 3.91
1893 2008 5.877012 TCATGTCTTTCTCCTTCACATAAGC 59.123 40.000 0.00 0.00 0.00 3.09
1894 2009 7.912056 TTCATGTCTTTCTCCTTCACATAAG 57.088 36.000 0.00 0.00 0.00 1.73
1896 2011 8.690203 TTTTTCATGTCTTTCTCCTTCACATA 57.310 30.769 0.00 0.00 0.00 2.29
1897 2012 7.286316 ACTTTTTCATGTCTTTCTCCTTCACAT 59.714 33.333 0.00 0.00 0.00 3.21
1898 2013 6.603201 ACTTTTTCATGTCTTTCTCCTTCACA 59.397 34.615 0.00 0.00 0.00 3.58
1899 2014 7.032377 ACTTTTTCATGTCTTTCTCCTTCAC 57.968 36.000 0.00 0.00 0.00 3.18
1900 2015 8.746052 TTACTTTTTCATGTCTTTCTCCTTCA 57.254 30.769 0.00 0.00 0.00 3.02
1901 2016 8.293157 CCTTACTTTTTCATGTCTTTCTCCTTC 58.707 37.037 0.00 0.00 0.00 3.46
1903 2018 6.717084 CCCTTACTTTTTCATGTCTTTCTCCT 59.283 38.462 0.00 0.00 0.00 3.69
1907 2022 6.490381 ACTCCCCTTACTTTTTCATGTCTTTC 59.510 38.462 0.00 0.00 0.00 2.62
1909 2024 5.770162 CACTCCCCTTACTTTTTCATGTCTT 59.230 40.000 0.00 0.00 0.00 3.01
1911 2026 4.459337 CCACTCCCCTTACTTTTTCATGTC 59.541 45.833 0.00 0.00 0.00 3.06
1912 2027 4.407365 CCACTCCCCTTACTTTTTCATGT 58.593 43.478 0.00 0.00 0.00 3.21
1913 2028 3.763897 CCCACTCCCCTTACTTTTTCATG 59.236 47.826 0.00 0.00 0.00 3.07
1914 2029 3.817931 GCCCACTCCCCTTACTTTTTCAT 60.818 47.826 0.00 0.00 0.00 2.57
1915 2030 2.490168 GCCCACTCCCCTTACTTTTTCA 60.490 50.000 0.00 0.00 0.00 2.69
1916 2031 2.168496 GCCCACTCCCCTTACTTTTTC 58.832 52.381 0.00 0.00 0.00 2.29
1919 2034 0.992695 GAGCCCACTCCCCTTACTTT 59.007 55.000 0.00 0.00 36.90 2.66
1922 2037 0.617820 TGAGAGCCCACTCCCCTTAC 60.618 60.000 0.00 0.00 44.65 2.34
1923 2038 0.343372 ATGAGAGCCCACTCCCCTTA 59.657 55.000 0.00 0.00 44.65 2.69
1924 2039 1.083706 ATGAGAGCCCACTCCCCTT 59.916 57.895 0.00 0.00 44.65 3.95
1925 2040 1.692042 CATGAGAGCCCACTCCCCT 60.692 63.158 0.00 0.00 44.65 4.79
1926 2041 2.914289 CATGAGAGCCCACTCCCC 59.086 66.667 0.00 0.00 44.65 4.81
1927 2042 2.191641 GCATGAGAGCCCACTCCC 59.808 66.667 0.00 0.00 44.65 4.30
1928 2043 0.322816 TTTGCATGAGAGCCCACTCC 60.323 55.000 0.00 0.00 44.65 3.85
1930 2045 1.542492 CTTTTGCATGAGAGCCCACT 58.458 50.000 0.00 0.00 0.00 4.00
1931 2046 0.108945 GCTTTTGCATGAGAGCCCAC 60.109 55.000 0.00 0.00 46.58 4.61
1943 2058 2.689983 ACACATATAGCCAGGCTTTTGC 59.310 45.455 22.26 0.00 46.64 3.68
1944 2059 3.489738 GCACACATATAGCCAGGCTTTTG 60.490 47.826 22.26 16.86 40.44 2.44
1945 2060 2.689983 GCACACATATAGCCAGGCTTTT 59.310 45.455 22.26 10.67 40.44 2.27
1946 2061 2.092212 AGCACACATATAGCCAGGCTTT 60.092 45.455 22.26 15.25 40.44 3.51
1947 2062 1.492176 AGCACACATATAGCCAGGCTT 59.508 47.619 22.26 10.30 40.44 4.35
1949 2064 1.517242 GAGCACACATATAGCCAGGC 58.483 55.000 1.84 1.84 0.00 4.85
1951 2066 2.549563 CCTGGAGCACACATATAGCCAG 60.550 54.545 0.00 0.00 40.74 4.85
1954 2069 1.417890 ACCCTGGAGCACACATATAGC 59.582 52.381 0.00 0.00 0.00 2.97
1955 2070 4.152647 TCTACCCTGGAGCACACATATAG 58.847 47.826 0.00 0.00 0.00 1.31
1957 2072 3.046283 TCTACCCTGGAGCACACATAT 57.954 47.619 0.00 0.00 0.00 1.78
1958 2073 2.543037 TCTACCCTGGAGCACACATA 57.457 50.000 0.00 0.00 0.00 2.29
1959 2074 1.487976 CATCTACCCTGGAGCACACAT 59.512 52.381 0.00 0.00 0.00 3.21
1960 2075 0.904649 CATCTACCCTGGAGCACACA 59.095 55.000 0.00 0.00 0.00 3.72
1961 2076 0.462759 GCATCTACCCTGGAGCACAC 60.463 60.000 0.00 0.00 0.00 3.82
1962 2077 0.909133 TGCATCTACCCTGGAGCACA 60.909 55.000 0.00 0.00 0.00 4.57
1963 2078 0.253044 TTGCATCTACCCTGGAGCAC 59.747 55.000 0.00 0.00 0.00 4.40
1964 2079 1.216064 ATTGCATCTACCCTGGAGCA 58.784 50.000 0.00 0.00 0.00 4.26
1965 2080 3.492102 TTATTGCATCTACCCTGGAGC 57.508 47.619 0.00 0.00 0.00 4.70
1966 2081 5.240183 CACATTTATTGCATCTACCCTGGAG 59.760 44.000 0.00 0.00 0.00 3.86
1968 2083 5.132502 TCACATTTATTGCATCTACCCTGG 58.867 41.667 0.00 0.00 0.00 4.45
1969 2084 5.240183 CCTCACATTTATTGCATCTACCCTG 59.760 44.000 0.00 0.00 0.00 4.45
1970 2085 5.132648 TCCTCACATTTATTGCATCTACCCT 59.867 40.000 0.00 0.00 0.00 4.34
1972 2087 6.942532 TTCCTCACATTTATTGCATCTACC 57.057 37.500 0.00 0.00 0.00 3.18
1973 2088 8.213518 TCTTTCCTCACATTTATTGCATCTAC 57.786 34.615 0.00 0.00 0.00 2.59
1974 2089 8.267183 TCTCTTTCCTCACATTTATTGCATCTA 58.733 33.333 0.00 0.00 0.00 1.98
1975 2090 7.066766 GTCTCTTTCCTCACATTTATTGCATCT 59.933 37.037 0.00 0.00 0.00 2.90
1976 2091 7.148188 TGTCTCTTTCCTCACATTTATTGCATC 60.148 37.037 0.00 0.00 0.00 3.91
1978 2093 6.003326 TGTCTCTTTCCTCACATTTATTGCA 58.997 36.000 0.00 0.00 0.00 4.08
1980 2095 7.821359 TCTCTGTCTCTTTCCTCACATTTATTG 59.179 37.037 0.00 0.00 0.00 1.90
1985 2100 5.083122 TCTCTCTGTCTCTTTCCTCACATT 58.917 41.667 0.00 0.00 0.00 2.71
1986 2101 4.671831 TCTCTCTGTCTCTTTCCTCACAT 58.328 43.478 0.00 0.00 0.00 3.21
1987 2102 4.105754 TCTCTCTGTCTCTTTCCTCACA 57.894 45.455 0.00 0.00 0.00 3.58
1989 2104 4.991776 TCTTCTCTCTGTCTCTTTCCTCA 58.008 43.478 0.00 0.00 0.00 3.86
1990 2105 5.652014 TCATCTTCTCTCTGTCTCTTTCCTC 59.348 44.000 0.00 0.00 0.00 3.71
1991 2106 5.579047 TCATCTTCTCTCTGTCTCTTTCCT 58.421 41.667 0.00 0.00 0.00 3.36
1992 2107 5.163519 CCTCATCTTCTCTCTGTCTCTTTCC 60.164 48.000 0.00 0.00 0.00 3.13
1993 2108 5.652014 TCCTCATCTTCTCTCTGTCTCTTTC 59.348 44.000 0.00 0.00 0.00 2.62
1994 2109 5.579047 TCCTCATCTTCTCTCTGTCTCTTT 58.421 41.667 0.00 0.00 0.00 2.52
1998 2113 5.191727 TCTTCCTCATCTTCTCTCTGTCT 57.808 43.478 0.00 0.00 0.00 3.41
1999 2114 5.593909 TCATCTTCCTCATCTTCTCTCTGTC 59.406 44.000 0.00 0.00 0.00 3.51
2000 2115 5.517924 TCATCTTCCTCATCTTCTCTCTGT 58.482 41.667 0.00 0.00 0.00 3.41
2001 2116 5.595542 ACTCATCTTCCTCATCTTCTCTCTG 59.404 44.000 0.00 0.00 0.00 3.35
2002 2117 5.595542 CACTCATCTTCCTCATCTTCTCTCT 59.404 44.000 0.00 0.00 0.00 3.10
2003 2118 5.593909 TCACTCATCTTCCTCATCTTCTCTC 59.406 44.000 0.00 0.00 0.00 3.20
2004 2119 5.360714 GTCACTCATCTTCCTCATCTTCTCT 59.639 44.000 0.00 0.00 0.00 3.10
2005 2120 5.360714 AGTCACTCATCTTCCTCATCTTCTC 59.639 44.000 0.00 0.00 0.00 2.87
2006 2121 5.271598 AGTCACTCATCTTCCTCATCTTCT 58.728 41.667 0.00 0.00 0.00 2.85
2007 2122 5.596836 AGTCACTCATCTTCCTCATCTTC 57.403 43.478 0.00 0.00 0.00 2.87
2009 2124 6.429692 CGTATAGTCACTCATCTTCCTCATCT 59.570 42.308 0.00 0.00 0.00 2.90
2010 2125 6.205853 ACGTATAGTCACTCATCTTCCTCATC 59.794 42.308 0.00 0.00 0.00 2.92
2013 2128 5.297278 ACACGTATAGTCACTCATCTTCCTC 59.703 44.000 0.00 0.00 0.00 3.71
2014 2129 5.194432 ACACGTATAGTCACTCATCTTCCT 58.806 41.667 0.00 0.00 0.00 3.36
2015 2130 5.502153 ACACGTATAGTCACTCATCTTCC 57.498 43.478 0.00 0.00 0.00 3.46
2016 2131 6.469595 GTCAACACGTATAGTCACTCATCTTC 59.530 42.308 0.00 0.00 0.00 2.87
2017 2132 6.151312 AGTCAACACGTATAGTCACTCATCTT 59.849 38.462 0.00 0.00 0.00 2.40
2018 2133 5.648526 AGTCAACACGTATAGTCACTCATCT 59.351 40.000 0.00 0.00 0.00 2.90
2019 2134 5.881447 AGTCAACACGTATAGTCACTCATC 58.119 41.667 0.00 0.00 0.00 2.92
2021 2136 6.596497 TCATAGTCAACACGTATAGTCACTCA 59.404 38.462 0.00 0.00 0.00 3.41
2023 2138 6.997239 TCATAGTCAACACGTATAGTCACT 57.003 37.500 0.00 0.00 0.00 3.41
2024 2139 7.913821 TCATTCATAGTCAACACGTATAGTCAC 59.086 37.037 0.00 0.00 0.00 3.67
2030 2145 9.594478 TGTTTATCATTCATAGTCAACACGTAT 57.406 29.630 0.00 0.00 0.00 3.06
2033 2148 8.820933 AGATGTTTATCATTCATAGTCAACACG 58.179 33.333 0.00 0.00 36.83 4.49
2044 2159 9.196552 CGCTGACTATAAGATGTTTATCATTCA 57.803 33.333 0.00 0.00 36.83 2.57
2045 2160 8.651588 CCGCTGACTATAAGATGTTTATCATTC 58.348 37.037 0.00 0.00 36.83 2.67
2046 2161 8.150945 ACCGCTGACTATAAGATGTTTATCATT 58.849 33.333 0.00 0.00 36.83 2.57
2047 2162 7.671302 ACCGCTGACTATAAGATGTTTATCAT 58.329 34.615 0.00 0.00 39.77 2.45
2048 2163 7.050970 ACCGCTGACTATAAGATGTTTATCA 57.949 36.000 0.00 0.00 35.70 2.15
2049 2164 7.095607 CCAACCGCTGACTATAAGATGTTTATC 60.096 40.741 0.00 0.00 0.00 1.75
2050 2165 6.706270 CCAACCGCTGACTATAAGATGTTTAT 59.294 38.462 0.00 0.00 0.00 1.40
2051 2166 6.046593 CCAACCGCTGACTATAAGATGTTTA 58.953 40.000 0.00 0.00 0.00 2.01
2052 2167 4.876107 CCAACCGCTGACTATAAGATGTTT 59.124 41.667 0.00 0.00 0.00 2.83
2053 2168 4.081087 ACCAACCGCTGACTATAAGATGTT 60.081 41.667 0.00 0.00 0.00 2.71
2054 2169 3.451178 ACCAACCGCTGACTATAAGATGT 59.549 43.478 0.00 0.00 0.00 3.06
2055 2170 4.060038 ACCAACCGCTGACTATAAGATG 57.940 45.455 0.00 0.00 0.00 2.90
2056 2171 4.081087 ACAACCAACCGCTGACTATAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
2058 2173 3.596214 ACAACCAACCGCTGACTATAAG 58.404 45.455 0.00 0.00 0.00 1.73
2059 2174 3.688694 ACAACCAACCGCTGACTATAA 57.311 42.857 0.00 0.00 0.00 0.98
2060 2175 5.347620 AATACAACCAACCGCTGACTATA 57.652 39.130 0.00 0.00 0.00 1.31
2061 2176 3.906720 ATACAACCAACCGCTGACTAT 57.093 42.857 0.00 0.00 0.00 2.12
2062 2177 3.688694 AATACAACCAACCGCTGACTA 57.311 42.857 0.00 0.00 0.00 2.59
2064 2179 4.957759 AATAATACAACCAACCGCTGAC 57.042 40.909 0.00 0.00 0.00 3.51
2067 2182 5.823209 GGTTAATAATACAACCAACCGCT 57.177 39.130 0.00 0.00 43.13 5.52
2143 2265 4.387026 AACCTGGATCTTGATTGGTCAA 57.613 40.909 0.00 0.00 41.89 3.18
2165 2824 6.934056 TGACAGCAGCAATATTGGTTTAATT 58.066 32.000 17.28 1.81 36.65 1.40
2166 2825 6.528537 TGACAGCAGCAATATTGGTTTAAT 57.471 33.333 17.28 4.41 36.65 1.40
2298 2957 0.320160 AGCCGGTTTTGGAGTCGTAC 60.320 55.000 1.90 0.00 0.00 3.67
2760 4914 0.608130 CTGTGGACGGGTTGATCTCA 59.392 55.000 0.00 0.00 0.00 3.27
2884 5762 4.026804 CGCCGTGTATCAAACTATGAACTC 60.027 45.833 0.00 0.00 42.54 3.01
2933 5814 0.250234 TTGACCCTGGAGCTTCATCG 59.750 55.000 0.00 0.00 0.00 3.84
2987 5868 9.554724 GAAACTGAACATAGATTTTCGCATAAA 57.445 29.630 0.00 0.00 0.00 1.40
2990 5871 7.144722 TGAAACTGAACATAGATTTTCGCAT 57.855 32.000 0.00 0.00 0.00 4.73
2992 5873 7.023575 ACATGAAACTGAACATAGATTTTCGC 58.976 34.615 0.00 0.00 0.00 4.70
2993 5874 8.955061 AACATGAAACTGAACATAGATTTTCG 57.045 30.769 0.00 0.00 0.00 3.46
3044 5925 0.179156 GAAATCTCACCGCGTACCGA 60.179 55.000 4.92 0.00 40.02 4.69
3079 5960 3.775654 CCGGCCCCAGAGACTCAC 61.776 72.222 5.02 0.00 0.00 3.51
3087 5968 1.750399 CAATTGACTCCGGCCCCAG 60.750 63.158 0.00 0.00 0.00 4.45
3088 5969 2.354729 CAATTGACTCCGGCCCCA 59.645 61.111 0.00 0.00 0.00 4.96
3089 5970 3.140814 GCAATTGACTCCGGCCCC 61.141 66.667 10.34 0.00 0.00 5.80
3090 5971 1.937546 CTTGCAATTGACTCCGGCCC 61.938 60.000 10.34 0.00 0.00 5.80
3091 5972 0.960364 TCTTGCAATTGACTCCGGCC 60.960 55.000 10.34 0.00 0.00 6.13
3092 5973 0.881118 TTCTTGCAATTGACTCCGGC 59.119 50.000 10.34 0.00 0.00 6.13
3093 5974 2.351738 GGTTTCTTGCAATTGACTCCGG 60.352 50.000 10.34 0.00 0.00 5.14
3136 6017 7.119262 CAGATTAACGATTTGGTAGTTTCCTGT 59.881 37.037 0.00 0.00 0.00 4.00
3218 6099 5.163844 GGAAAAGAGATCAAACGAGGCTAAC 60.164 44.000 0.00 0.00 0.00 2.34
3496 6388 2.354704 CCGCAAACCTCTGTTGGATCTA 60.355 50.000 0.00 0.00 34.13 1.98
3700 6592 3.604312 ACCCTAGAACCCTAACCCTAGAA 59.396 47.826 0.00 0.00 32.49 2.10
3701 6593 3.213324 ACCCTAGAACCCTAACCCTAGA 58.787 50.000 0.00 0.00 32.49 2.43
3702 6594 3.702703 ACCCTAGAACCCTAACCCTAG 57.297 52.381 0.00 0.00 0.00 3.02
3703 6595 4.078395 CCTAACCCTAGAACCCTAACCCTA 60.078 50.000 0.00 0.00 0.00 3.53
3704 6596 3.311177 CCTAACCCTAGAACCCTAACCCT 60.311 52.174 0.00 0.00 0.00 4.34
3705 6597 3.044156 CCTAACCCTAGAACCCTAACCC 58.956 54.545 0.00 0.00 0.00 4.11
3706 6598 3.044156 CCCTAACCCTAGAACCCTAACC 58.956 54.545 0.00 0.00 0.00 2.85
3707 6599 3.729108 ACCCTAACCCTAGAACCCTAAC 58.271 50.000 0.00 0.00 0.00 2.34
3708 6600 4.047655 AGAACCCTAACCCTAGAACCCTAA 59.952 45.833 0.00 0.00 0.00 2.69
3709 6601 3.604312 AGAACCCTAACCCTAGAACCCTA 59.396 47.826 0.00 0.00 0.00 3.53
3710 6602 2.389620 AGAACCCTAACCCTAGAACCCT 59.610 50.000 0.00 0.00 0.00 4.34
3711 6603 2.843081 AGAACCCTAACCCTAGAACCC 58.157 52.381 0.00 0.00 0.00 4.11
3712 6604 5.028802 ACTTAGAACCCTAACCCTAGAACC 58.971 45.833 0.00 0.00 31.94 3.62
3713 6605 5.483231 ACACTTAGAACCCTAACCCTAGAAC 59.517 44.000 0.00 0.00 31.94 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.