Multiple sequence alignment - TraesCS2D01G025000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G025000 chr2D 100.000 6022 0 0 1 6022 10967761 10961740 0.000000e+00 11121.0
1 TraesCS2D01G025000 chr2D 79.386 684 112 19 2346 3012 10894889 10894218 7.110000e-124 455.0
2 TraesCS2D01G025000 chr2D 78.199 422 82 6 3991 4404 10893794 10893375 1.660000e-65 261.0
3 TraesCS2D01G025000 chr2A 94.639 3395 144 18 1417 4788 11633940 11630561 0.000000e+00 5227.0
4 TraesCS2D01G025000 chr2A 90.647 1283 64 24 170 1436 11635192 11633950 0.000000e+00 1653.0
5 TraesCS2D01G025000 chr2A 77.641 407 77 10 4008 4404 11572746 11572344 1.010000e-57 235.0
6 TraesCS2D01G025000 chr2A 77.641 407 77 10 4008 4404 11600562 11600160 1.010000e-57 235.0
7 TraesCS2D01G025000 chr2A 73.404 658 140 22 2032 2680 710484211 710483580 4.730000e-51 213.0
8 TraesCS2D01G025000 chr2B 89.078 1584 124 25 2340 3879 16275959 16274381 0.000000e+00 1921.0
9 TraesCS2D01G025000 chr2B 86.246 887 77 15 3923 4791 16274382 16273523 0.000000e+00 920.0
10 TraesCS2D01G025000 chr2B 89.590 586 44 7 1758 2326 16276528 16275943 0.000000e+00 728.0
11 TraesCS2D01G025000 chr2B 92.934 467 24 7 183 645 16278393 16277932 0.000000e+00 671.0
12 TraesCS2D01G025000 chr2B 85.026 581 65 8 681 1256 16277838 16277275 6.770000e-159 571.0
13 TraesCS2D01G025000 chr2B 92.000 150 11 1 1283 1432 16276992 16276844 6.120000e-50 209.0
14 TraesCS2D01G025000 chr2B 100.000 41 0 0 3882 3922 778286879 778286919 6.470000e-10 76.8
15 TraesCS2D01G025000 chr2B 95.556 45 2 0 3880 3924 246157061 246157017 8.370000e-09 73.1
16 TraesCS2D01G025000 chr3D 89.344 1173 97 9 4874 6022 466794619 466793451 0.000000e+00 1448.0
17 TraesCS2D01G025000 chr3D 97.619 42 1 0 3881 3922 388328223 388328182 8.370000e-09 73.1
18 TraesCS2D01G025000 chr4D 89.280 1166 91 12 4887 6022 73317806 73316645 0.000000e+00 1430.0
19 TraesCS2D01G025000 chrUn 88.576 1173 105 11 4875 6022 95799981 95798813 0.000000e+00 1397.0
20 TraesCS2D01G025000 chrUn 86.831 1177 116 16 4875 6022 65842579 65841413 0.000000e+00 1279.0
21 TraesCS2D01G025000 chrUn 77.641 407 77 10 4008 4404 311102413 311102815 1.010000e-57 235.0
22 TraesCS2D01G025000 chr1A 88.285 1178 105 15 4874 6022 293731412 293732585 0.000000e+00 1380.0
23 TraesCS2D01G025000 chr1A 100.000 42 0 0 3883 3924 372547185 372547144 1.800000e-10 78.7
24 TraesCS2D01G025000 chr1A 100.000 38 0 0 3885 3922 77284447 77284410 3.010000e-08 71.3
25 TraesCS2D01G025000 chr6B 88.205 1170 108 13 4874 6018 256391251 256392415 0.000000e+00 1369.0
26 TraesCS2D01G025000 chr3A 86.931 1186 121 13 4864 6022 697227502 697228680 0.000000e+00 1301.0
27 TraesCS2D01G025000 chr3A 80.556 144 10 7 4866 5000 698214820 698214686 1.790000e-15 95.3
28 TraesCS2D01G025000 chr5B 86.916 1177 115 16 4875 6022 36777143 36778309 0.000000e+00 1284.0
29 TraesCS2D01G025000 chr5B 86.576 1177 119 16 4875 6022 36818173 36819339 0.000000e+00 1262.0
30 TraesCS2D01G025000 chr5B 100.000 42 0 0 3881 3922 704985392 704985433 1.800000e-10 78.7
31 TraesCS2D01G025000 chr1B 85.920 1179 131 12 4874 6022 20348107 20349280 0.000000e+00 1225.0
32 TraesCS2D01G025000 chr1B 85.920 1179 131 12 4874 6022 20387906 20389079 0.000000e+00 1225.0
33 TraesCS2D01G025000 chr1B 87.446 924 88 15 4874 5773 492354904 492353985 0.000000e+00 1038.0
34 TraesCS2D01G025000 chr5D 87.934 605 51 4 5440 6022 483607956 483608560 0.000000e+00 693.0
35 TraesCS2D01G025000 chr3B 74.530 585 120 24 2017 2593 1355917 1356480 1.690000e-55 228.0
36 TraesCS2D01G025000 chr3B 97.727 44 0 1 3880 3922 10759917 10759874 2.330000e-09 75.0
37 TraesCS2D01G025000 chr7D 100.000 40 0 0 3883 3922 618263017 618263056 2.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G025000 chr2D 10961740 10967761 6021 True 11121.000000 11121 100.000000 1 6022 1 chr2D.!!$R1 6021
1 TraesCS2D01G025000 chr2D 10893375 10894889 1514 True 358.000000 455 78.792500 2346 4404 2 chr2D.!!$R2 2058
2 TraesCS2D01G025000 chr2A 11630561 11635192 4631 True 3440.000000 5227 92.643000 170 4788 2 chr2A.!!$R4 4618
3 TraesCS2D01G025000 chr2A 710483580 710484211 631 True 213.000000 213 73.404000 2032 2680 1 chr2A.!!$R3 648
4 TraesCS2D01G025000 chr2B 16273523 16278393 4870 True 836.666667 1921 89.145667 183 4791 6 chr2B.!!$R2 4608
5 TraesCS2D01G025000 chr3D 466793451 466794619 1168 True 1448.000000 1448 89.344000 4874 6022 1 chr3D.!!$R2 1148
6 TraesCS2D01G025000 chr4D 73316645 73317806 1161 True 1430.000000 1430 89.280000 4887 6022 1 chr4D.!!$R1 1135
7 TraesCS2D01G025000 chrUn 95798813 95799981 1168 True 1397.000000 1397 88.576000 4875 6022 1 chrUn.!!$R2 1147
8 TraesCS2D01G025000 chrUn 65841413 65842579 1166 True 1279.000000 1279 86.831000 4875 6022 1 chrUn.!!$R1 1147
9 TraesCS2D01G025000 chr1A 293731412 293732585 1173 False 1380.000000 1380 88.285000 4874 6022 1 chr1A.!!$F1 1148
10 TraesCS2D01G025000 chr6B 256391251 256392415 1164 False 1369.000000 1369 88.205000 4874 6018 1 chr6B.!!$F1 1144
11 TraesCS2D01G025000 chr3A 697227502 697228680 1178 False 1301.000000 1301 86.931000 4864 6022 1 chr3A.!!$F1 1158
12 TraesCS2D01G025000 chr5B 36777143 36778309 1166 False 1284.000000 1284 86.916000 4875 6022 1 chr5B.!!$F1 1147
13 TraesCS2D01G025000 chr5B 36818173 36819339 1166 False 1262.000000 1262 86.576000 4875 6022 1 chr5B.!!$F2 1147
14 TraesCS2D01G025000 chr1B 20348107 20349280 1173 False 1225.000000 1225 85.920000 4874 6022 1 chr1B.!!$F1 1148
15 TraesCS2D01G025000 chr1B 20387906 20389079 1173 False 1225.000000 1225 85.920000 4874 6022 1 chr1B.!!$F2 1148
16 TraesCS2D01G025000 chr1B 492353985 492354904 919 True 1038.000000 1038 87.446000 4874 5773 1 chr1B.!!$R1 899
17 TraesCS2D01G025000 chr5D 483607956 483608560 604 False 693.000000 693 87.934000 5440 6022 1 chr5D.!!$F1 582
18 TraesCS2D01G025000 chr3B 1355917 1356480 563 False 228.000000 228 74.530000 2017 2593 1 chr3B.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.031716 TCAGGGAGGGTGAGAGGATG 60.032 60.000 0.00 0.0 0.00 3.51 F
150 151 0.101939 GCCTGCTGCTTTCCATTAGC 59.898 55.000 0.00 0.0 39.10 3.09 F
788 868 0.473755 TGGACCATGCAAGTGTGAGT 59.526 50.000 0.00 0.0 0.00 3.41 F
789 869 0.877071 GGACCATGCAAGTGTGAGTG 59.123 55.000 0.00 0.0 0.00 3.51 F
926 1006 1.161113 AGTTGCCACCTACTCCCCT 59.839 57.895 0.00 0.0 0.00 4.79 F
1006 1087 1.299541 GATGGGATGTGATCGCGTTT 58.700 50.000 5.77 0.0 44.36 3.60 F
1664 2041 3.181507 CCAGACATGTGAATTAAGGCACG 60.182 47.826 1.15 0.0 37.83 5.34 F
3109 3567 2.156098 GTTGACCGACATAAAAGGCCA 58.844 47.619 5.01 0.0 0.00 5.36 F
4296 4814 0.315869 GTGCCGTGTGTATAATGCGC 60.316 55.000 0.00 0.0 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1709 1.552792 CTCCTCTCCCTGTTGACCTTC 59.447 57.143 0.00 0.00 0.00 3.46 R
1469 1840 1.614903 CACACTTGCATGGTCCATGTT 59.385 47.619 28.66 11.52 43.10 2.71 R
2178 2580 0.673644 CTCCCGCCGAGTTTCATTGT 60.674 55.000 0.00 0.00 33.51 2.71 R
2416 2841 2.939103 GTGCCAATCATGTCCACTAGAC 59.061 50.000 0.00 0.00 46.51 2.59 R
2632 3063 6.204688 TGGAGAACAACTAAGCTTACATTGTG 59.795 38.462 22.94 8.74 33.88 3.33 R
2865 3303 6.320672 AGCTCAATGAATTGTTGGGAAGATAG 59.679 38.462 4.61 0.00 38.84 2.08 R
3663 4174 3.263425 GCGGATTTGGAATATCCCCTCTA 59.737 47.826 0.00 0.00 38.68 2.43 R
4856 5392 0.035881 CTCCAGGTGCGCCATATCAT 59.964 55.000 20.59 0.00 37.19 2.45 R
5705 6288 0.385223 GCCATGCGCTGATCGAAATC 60.385 55.000 9.73 0.00 41.67 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.123620 GCACCTTGCTCTCCTGCG 61.124 66.667 0.00 0.00 40.96 5.18
25 26 2.659016 CACCTTGCTCTCCTGCGA 59.341 61.111 0.00 0.00 35.36 5.10
26 27 1.739562 CACCTTGCTCTCCTGCGAC 60.740 63.158 0.00 0.00 35.36 5.19
27 28 2.210013 ACCTTGCTCTCCTGCGACA 61.210 57.895 0.00 0.00 35.36 4.35
28 29 1.004560 CCTTGCTCTCCTGCGACAA 60.005 57.895 0.00 0.00 35.36 3.18
29 30 0.392193 CCTTGCTCTCCTGCGACAAT 60.392 55.000 0.00 0.00 35.36 2.71
30 31 1.005340 CTTGCTCTCCTGCGACAATC 58.995 55.000 0.00 0.00 35.36 2.67
31 32 0.321346 TTGCTCTCCTGCGACAATCA 59.679 50.000 0.00 0.00 35.36 2.57
32 33 0.108472 TGCTCTCCTGCGACAATCAG 60.108 55.000 0.00 0.00 35.36 2.90
36 37 4.528674 CCTGCGACAATCAGGGAG 57.471 61.111 1.24 0.00 45.62 4.30
37 38 1.153289 CCTGCGACAATCAGGGAGG 60.153 63.158 1.24 0.00 45.62 4.30
38 39 1.153289 CTGCGACAATCAGGGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
39 40 1.903877 CTGCGACAATCAGGGAGGGT 61.904 60.000 0.00 0.00 0.00 4.34
40 41 1.450312 GCGACAATCAGGGAGGGTG 60.450 63.158 0.00 0.00 0.00 4.61
41 42 1.899437 GCGACAATCAGGGAGGGTGA 61.899 60.000 0.00 0.00 0.00 4.02
42 43 0.176680 CGACAATCAGGGAGGGTGAG 59.823 60.000 0.00 0.00 0.00 3.51
43 44 1.573108 GACAATCAGGGAGGGTGAGA 58.427 55.000 0.00 0.00 0.00 3.27
44 45 1.484240 GACAATCAGGGAGGGTGAGAG 59.516 57.143 0.00 0.00 0.00 3.20
45 46 0.835941 CAATCAGGGAGGGTGAGAGG 59.164 60.000 0.00 0.00 0.00 3.69
46 47 0.719015 AATCAGGGAGGGTGAGAGGA 59.281 55.000 0.00 0.00 0.00 3.71
47 48 0.948050 ATCAGGGAGGGTGAGAGGAT 59.052 55.000 0.00 0.00 0.00 3.24
48 49 0.031716 TCAGGGAGGGTGAGAGGATG 60.032 60.000 0.00 0.00 0.00 3.51
49 50 1.383803 AGGGAGGGTGAGAGGATGC 60.384 63.158 0.00 0.00 0.00 3.91
50 51 1.690633 GGGAGGGTGAGAGGATGCA 60.691 63.158 0.00 0.00 0.00 3.96
51 52 1.694133 GGGAGGGTGAGAGGATGCAG 61.694 65.000 0.00 0.00 0.00 4.41
52 53 0.689080 GGAGGGTGAGAGGATGCAGA 60.689 60.000 0.00 0.00 0.00 4.26
53 54 0.752054 GAGGGTGAGAGGATGCAGAG 59.248 60.000 0.00 0.00 0.00 3.35
54 55 0.690411 AGGGTGAGAGGATGCAGAGG 60.690 60.000 0.00 0.00 0.00 3.69
55 56 0.689080 GGGTGAGAGGATGCAGAGGA 60.689 60.000 0.00 0.00 0.00 3.71
56 57 1.198713 GGTGAGAGGATGCAGAGGAA 58.801 55.000 0.00 0.00 0.00 3.36
57 58 1.767681 GGTGAGAGGATGCAGAGGAAT 59.232 52.381 0.00 0.00 0.00 3.01
58 59 2.224257 GGTGAGAGGATGCAGAGGAATC 60.224 54.545 0.00 0.00 0.00 2.52
59 60 2.699846 GTGAGAGGATGCAGAGGAATCT 59.300 50.000 0.00 0.00 0.00 2.40
60 61 3.894427 GTGAGAGGATGCAGAGGAATCTA 59.106 47.826 0.00 0.00 0.00 1.98
61 62 3.894427 TGAGAGGATGCAGAGGAATCTAC 59.106 47.826 0.00 0.00 0.00 2.59
62 63 3.238597 AGAGGATGCAGAGGAATCTACC 58.761 50.000 0.00 0.00 0.00 3.18
63 64 2.301583 GAGGATGCAGAGGAATCTACCC 59.698 54.545 0.00 0.00 0.00 3.69
64 65 2.050144 GGATGCAGAGGAATCTACCCA 58.950 52.381 0.00 0.00 0.00 4.51
65 66 2.038295 GGATGCAGAGGAATCTACCCAG 59.962 54.545 0.00 0.00 0.00 4.45
66 67 2.550277 TGCAGAGGAATCTACCCAGA 57.450 50.000 0.00 0.00 34.56 3.86
67 68 2.392662 TGCAGAGGAATCTACCCAGAG 58.607 52.381 0.00 0.00 33.22 3.35
68 69 2.023984 TGCAGAGGAATCTACCCAGAGA 60.024 50.000 0.00 0.00 33.22 3.10
69 70 2.627699 GCAGAGGAATCTACCCAGAGAG 59.372 54.545 0.00 0.00 33.22 3.20
70 71 3.689858 GCAGAGGAATCTACCCAGAGAGA 60.690 52.174 0.00 0.00 33.22 3.10
71 72 4.739793 CAGAGGAATCTACCCAGAGAGAT 58.260 47.826 0.00 0.00 33.22 2.75
72 73 4.523943 CAGAGGAATCTACCCAGAGAGATG 59.476 50.000 0.00 0.00 32.66 2.90
73 74 3.831911 GAGGAATCTACCCAGAGAGATGG 59.168 52.174 0.00 0.00 40.29 3.51
81 82 0.317799 CCAGAGAGATGGGCAGATCG 59.682 60.000 0.00 0.00 36.64 3.69
82 83 0.317799 CAGAGAGATGGGCAGATCGG 59.682 60.000 0.00 0.00 0.00 4.18
83 84 1.005156 GAGAGATGGGCAGATCGGC 60.005 63.158 9.58 9.58 40.20 5.54
91 92 4.521062 GCAGATCGGCCTCAGCGT 62.521 66.667 6.57 0.00 41.24 5.07
92 93 2.185350 CAGATCGGCCTCAGCGTT 59.815 61.111 0.00 0.00 41.24 4.84
93 94 1.448540 CAGATCGGCCTCAGCGTTT 60.449 57.895 0.00 0.00 41.24 3.60
94 95 1.021390 CAGATCGGCCTCAGCGTTTT 61.021 55.000 0.00 0.00 41.24 2.43
95 96 0.535335 AGATCGGCCTCAGCGTTTTA 59.465 50.000 0.00 0.00 41.24 1.52
96 97 0.651031 GATCGGCCTCAGCGTTTTAC 59.349 55.000 0.00 0.00 41.24 2.01
97 98 1.082117 ATCGGCCTCAGCGTTTTACG 61.082 55.000 0.00 0.00 45.88 3.18
124 125 3.140814 GCCGGAATGCAGGGGTTC 61.141 66.667 5.05 0.00 0.00 3.62
125 126 2.824041 CCGGAATGCAGGGGTTCG 60.824 66.667 0.00 0.00 0.00 3.95
126 127 3.508840 CGGAATGCAGGGGTTCGC 61.509 66.667 0.00 0.00 0.00 4.70
127 128 3.508840 GGAATGCAGGGGTTCGCG 61.509 66.667 0.00 0.00 0.00 5.87
128 129 4.179579 GAATGCAGGGGTTCGCGC 62.180 66.667 0.00 0.00 0.00 6.86
150 151 0.101939 GCCTGCTGCTTTCCATTAGC 59.898 55.000 0.00 0.00 39.10 3.09
151 152 1.760192 CCTGCTGCTTTCCATTAGCT 58.240 50.000 0.00 0.00 39.38 3.32
152 153 1.674962 CCTGCTGCTTTCCATTAGCTC 59.325 52.381 0.00 0.00 39.38 4.09
153 154 2.362736 CTGCTGCTTTCCATTAGCTCA 58.637 47.619 0.00 0.00 39.38 4.26
154 155 2.751259 CTGCTGCTTTCCATTAGCTCAA 59.249 45.455 0.00 0.00 39.38 3.02
155 156 3.156293 TGCTGCTTTCCATTAGCTCAAA 58.844 40.909 0.00 0.00 39.38 2.69
156 157 3.765511 TGCTGCTTTCCATTAGCTCAAAT 59.234 39.130 0.00 0.00 39.38 2.32
157 158 4.142315 TGCTGCTTTCCATTAGCTCAAATC 60.142 41.667 0.00 0.00 39.38 2.17
158 159 4.595116 CTGCTTTCCATTAGCTCAAATCG 58.405 43.478 0.00 0.00 39.38 3.34
159 160 4.009675 TGCTTTCCATTAGCTCAAATCGT 58.990 39.130 0.00 0.00 39.38 3.73
160 161 4.458989 TGCTTTCCATTAGCTCAAATCGTT 59.541 37.500 0.00 0.00 39.38 3.85
161 162 5.048083 TGCTTTCCATTAGCTCAAATCGTTT 60.048 36.000 0.00 0.00 39.38 3.60
162 163 5.287035 GCTTTCCATTAGCTCAAATCGTTTG 59.713 40.000 0.00 4.67 41.96 2.93
163 164 4.963276 TCCATTAGCTCAAATCGTTTGG 57.037 40.909 0.00 0.00 40.98 3.28
164 165 3.128589 TCCATTAGCTCAAATCGTTTGGC 59.871 43.478 0.00 10.83 40.98 4.52
165 166 3.129287 CCATTAGCTCAAATCGTTTGGCT 59.871 43.478 19.30 19.30 44.04 4.75
166 167 3.829886 TTAGCTCAAATCGTTTGGCTG 57.170 42.857 21.61 11.51 42.76 4.85
167 168 1.609208 AGCTCAAATCGTTTGGCTGT 58.391 45.000 16.97 4.40 41.94 4.40
168 169 1.956477 AGCTCAAATCGTTTGGCTGTT 59.044 42.857 16.97 5.17 41.94 3.16
173 174 0.743688 AATCGTTTGGCTGTTGTGCA 59.256 45.000 0.00 0.00 34.04 4.57
185 186 3.921119 TGTTGTGCAGAAATTGGCTAG 57.079 42.857 0.00 0.00 0.00 3.42
186 187 2.030007 TGTTGTGCAGAAATTGGCTAGC 60.030 45.455 6.04 6.04 0.00 3.42
188 189 2.449464 TGTGCAGAAATTGGCTAGCAT 58.551 42.857 18.24 0.00 34.24 3.79
189 190 2.827322 TGTGCAGAAATTGGCTAGCATT 59.173 40.909 18.24 5.72 34.24 3.56
190 191 3.119388 TGTGCAGAAATTGGCTAGCATTC 60.119 43.478 18.24 14.15 34.24 2.67
242 250 3.922850 GTCCAAGAAGCTTAATTTGCTGC 59.077 43.478 0.00 5.01 41.03 5.25
246 254 5.335897 CCAAGAAGCTTAATTTGCTGCTGTA 60.336 40.000 12.59 0.00 45.08 2.74
247 255 6.327934 CAAGAAGCTTAATTTGCTGCTGTAT 58.672 36.000 12.59 0.00 45.08 2.29
248 256 6.521151 AGAAGCTTAATTTGCTGCTGTATT 57.479 33.333 11.46 0.80 44.21 1.89
249 257 7.630242 AGAAGCTTAATTTGCTGCTGTATTA 57.370 32.000 11.46 0.00 44.21 0.98
307 315 2.559668 CTGCACATTGGATTCCAACTGT 59.440 45.455 20.21 19.67 46.95 3.55
309 317 3.243805 TGCACATTGGATTCCAACTGTTG 60.244 43.478 20.21 16.06 46.95 3.33
311 319 4.549458 CACATTGGATTCCAACTGTTGAC 58.451 43.478 20.21 9.56 46.95 3.18
313 321 3.593442 TTGGATTCCAACTGTTGACCT 57.407 42.857 21.49 5.37 38.75 3.85
350 358 5.163364 TGCAAATTGTGTAATGACCACCTTT 60.163 36.000 0.00 0.00 31.71 3.11
379 387 6.682861 GCCCCTGTATAATTAAGCCTTGTTTG 60.683 42.308 0.00 0.00 0.00 2.93
407 415 6.652900 CCAACTGGTTAATTTAAATGGGGTTG 59.347 38.462 0.39 10.63 0.00 3.77
557 566 4.641989 AGTTAATCATTTCGGCATTGCTCT 59.358 37.500 8.82 0.00 0.00 4.09
613 622 2.438021 CTGCTGGTTAAGTATGCCCCTA 59.562 50.000 0.00 0.00 0.00 3.53
669 742 2.945008 TCAACAAGGTGAAGAGCAGTTG 59.055 45.455 0.00 0.00 38.33 3.16
755 835 2.516277 TCTTTCTTTTTCCCCCACCAGA 59.484 45.455 0.00 0.00 0.00 3.86
785 865 1.250328 ACATGGACCATGCAAGTGTG 58.750 50.000 30.60 9.93 44.80 3.82
786 866 1.202915 ACATGGACCATGCAAGTGTGA 60.203 47.619 30.60 0.00 44.80 3.58
787 867 1.471287 CATGGACCATGCAAGTGTGAG 59.529 52.381 21.35 0.00 35.02 3.51
788 868 0.473755 TGGACCATGCAAGTGTGAGT 59.526 50.000 0.00 0.00 0.00 3.41
789 869 0.877071 GGACCATGCAAGTGTGAGTG 59.123 55.000 0.00 0.00 0.00 3.51
790 870 1.597742 GACCATGCAAGTGTGAGTGT 58.402 50.000 0.00 0.00 0.00 3.55
791 871 1.265095 GACCATGCAAGTGTGAGTGTG 59.735 52.381 0.00 0.00 0.00 3.82
792 872 1.311859 CCATGCAAGTGTGAGTGTGT 58.688 50.000 0.00 0.00 0.00 3.72
879 959 1.552337 CCTGCTAGCGGTGGATATGAT 59.448 52.381 21.93 0.00 0.00 2.45
919 999 3.758023 CACAATGATTCAGTTGCCACCTA 59.242 43.478 0.00 0.00 0.00 3.08
926 1006 1.161113 AGTTGCCACCTACTCCCCT 59.839 57.895 0.00 0.00 0.00 4.79
984 1065 6.532657 GCAACTGCATAATTTAATCTGCTTGT 59.467 34.615 11.77 8.72 41.59 3.16
1001 1082 3.434641 GCTTGTATGATGGGATGTGATCG 59.565 47.826 0.00 0.00 0.00 3.69
1002 1083 3.044235 TGTATGATGGGATGTGATCGC 57.956 47.619 0.00 0.00 42.05 4.58
1006 1087 1.299541 GATGGGATGTGATCGCGTTT 58.700 50.000 5.77 0.00 44.36 3.60
1242 1326 9.533831 AATTCTGTAAGGAAGTGACCATATTTT 57.466 29.630 0.00 0.00 0.00 1.82
1358 1698 3.312421 GTGCAAGCTTCTTTGTGTACTGA 59.688 43.478 0.00 0.00 0.00 3.41
1369 1709 4.406648 TTGTGTACTGATAGAGCCCATG 57.593 45.455 0.00 0.00 0.00 3.66
1403 1743 3.615155 GAGAGGAGCACTTAAATTGGCT 58.385 45.455 0.00 0.00 39.75 4.75
1465 1836 6.459670 TGTTTTTCTTTACCAGGAGAAACC 57.540 37.500 0.00 0.00 40.49 3.27
1469 1840 5.549742 TTCTTTACCAGGAGAAACCGTAA 57.450 39.130 0.00 0.00 44.74 3.18
1605 1976 7.797038 ATCTGGTACGTTTAATATGGTTTCC 57.203 36.000 0.00 0.00 0.00 3.13
1660 2037 4.012374 AGCACCAGACATGTGAATTAAGG 58.988 43.478 1.15 0.00 35.74 2.69
1664 2041 3.181507 CCAGACATGTGAATTAAGGCACG 60.182 47.826 1.15 0.00 37.83 5.34
1681 2058 3.303990 GGCACGCTTCACATTATATGGTG 60.304 47.826 0.00 0.00 36.36 4.17
1690 2067 7.376866 GCTTCACATTATATGGTGAACAAATCG 59.623 37.037 12.98 6.52 46.01 3.34
1709 2086 3.670625 TCGTTGTCCCCTTCATTTGTAG 58.329 45.455 0.00 0.00 0.00 2.74
1827 2229 4.036498 CCAAAGACAGATGAGGAATGCATC 59.964 45.833 0.00 0.00 41.85 3.91
1935 2337 5.848406 AGTGTATAGCAGTAGAGGATTTGC 58.152 41.667 0.00 0.00 36.83 3.68
2123 2525 6.325804 TGATGATGAGCTATTTGAGAAGGAGA 59.674 38.462 0.00 0.00 0.00 3.71
2178 2580 4.755629 TGTTGTGCGTTTAGTTGGCTATTA 59.244 37.500 0.00 0.00 0.00 0.98
2314 2716 6.695429 TCTCTCTGGTATGATGCATAATGTC 58.305 40.000 6.82 0.15 0.00 3.06
2332 2734 9.193133 CATAATGTCCTACTTGTATTTACCTCG 57.807 37.037 0.00 0.00 0.00 4.63
2416 2841 7.876582 TGGATGCTCTTCATTGTTATAGATGAG 59.123 37.037 0.00 0.00 35.05 2.90
2807 3245 8.540388 TCTAGTAAGTTGGACATATTCAGCTTT 58.460 33.333 0.00 0.00 36.24 3.51
2808 3246 9.167311 CTAGTAAGTTGGACATATTCAGCTTTT 57.833 33.333 0.00 0.00 36.24 2.27
2865 3303 3.304726 GGGCTACTCAAAAAGTGCTGAAC 60.305 47.826 0.00 0.00 39.11 3.18
3026 3484 4.721776 TGGAGGAATAGGCTACAGTGAATT 59.278 41.667 0.00 0.00 0.00 2.17
3109 3567 2.156098 GTTGACCGACATAAAAGGCCA 58.844 47.619 5.01 0.00 0.00 5.36
3150 3608 9.745880 CCTTAATAAGCTATACGAGACAGAAAA 57.254 33.333 0.00 0.00 0.00 2.29
3316 3805 7.984422 TTATATGTTCAATCCTGGCATACTG 57.016 36.000 0.00 0.00 0.00 2.74
3393 3883 5.106712 TGTGCTTGAAAGATTGATTCCGTAC 60.107 40.000 0.00 0.00 0.00 3.67
3538 4049 7.061752 AGATTTCGTAGTACTGTTGATTTGC 57.938 36.000 5.39 0.00 0.00 3.68
3752 4263 7.535940 TCGTATAACAATTAGCTTTGTTTGTGC 59.464 33.333 18.90 11.97 45.14 4.57
3883 4395 3.825908 TCCTGGTGGGAAGCTAAATTT 57.174 42.857 0.00 0.00 41.91 1.82
3910 4422 3.750501 TTGAAAAGGAGGATAACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
4074 4586 4.888917 AGAAAAACGGGAGAGAGAAGAAG 58.111 43.478 0.00 0.00 0.00 2.85
4078 4590 2.877866 ACGGGAGAGAGAAGAAGTGAA 58.122 47.619 0.00 0.00 0.00 3.18
4144 4656 7.462571 AGTTGGATAAAATGGAAAGGTACAC 57.537 36.000 0.00 0.00 0.00 2.90
4145 4657 7.238710 AGTTGGATAAAATGGAAAGGTACACT 58.761 34.615 0.00 0.00 0.00 3.55
4158 4670 1.336755 GGTACACTGGCAAACACAAGG 59.663 52.381 0.00 0.00 0.00 3.61
4173 4685 2.722201 AAGGCACGGGAGGATCGAC 61.722 63.158 0.00 0.00 34.37 4.20
4216 4728 1.406069 GGACGAGCATGACAAGGACAT 60.406 52.381 0.00 0.00 0.00 3.06
4220 4732 2.800985 CGAGCATGACAAGGACATCGAT 60.801 50.000 0.00 0.00 0.00 3.59
4221 4733 3.201290 GAGCATGACAAGGACATCGATT 58.799 45.455 0.00 0.00 0.00 3.34
4230 4742 1.139853 AGGACATCGATTCTTCCAGGC 59.860 52.381 16.31 0.00 0.00 4.85
4240 4752 1.361204 TCTTCCAGGCATGTCAAGGA 58.639 50.000 7.36 7.36 0.00 3.36
4296 4814 0.315869 GTGCCGTGTGTATAATGCGC 60.316 55.000 0.00 0.00 0.00 6.09
4432 4950 1.366366 CCGGTCAGTCGTCAGGTTT 59.634 57.895 0.00 0.00 0.00 3.27
4459 4988 6.071784 GGTGTACCGAGGGAAAAATAAACATT 60.072 38.462 0.00 0.00 0.00 2.71
4467 4996 6.230472 AGGGAAAAATAAACATTGCCAAGAC 58.770 36.000 0.00 0.00 0.00 3.01
4504 5033 1.762957 CCTGGAGTACCCCATGTAGTG 59.237 57.143 0.00 0.00 35.33 2.74
4531 5060 3.247648 GCACCGCAACAAGGTACATATAG 59.752 47.826 0.00 0.00 40.59 1.31
4532 5061 3.807622 CACCGCAACAAGGTACATATAGG 59.192 47.826 0.00 0.00 40.59 2.57
4533 5062 3.707611 ACCGCAACAAGGTACATATAGGA 59.292 43.478 0.00 0.00 40.80 2.94
4534 5063 4.202223 ACCGCAACAAGGTACATATAGGAG 60.202 45.833 0.00 0.00 40.80 3.69
4535 5064 4.307432 CGCAACAAGGTACATATAGGAGG 58.693 47.826 0.00 0.00 0.00 4.30
4536 5065 4.038763 CGCAACAAGGTACATATAGGAGGA 59.961 45.833 0.00 0.00 0.00 3.71
4537 5066 5.542779 GCAACAAGGTACATATAGGAGGAG 58.457 45.833 0.00 0.00 0.00 3.69
4589 5118 1.673920 TGAGTTCAACCGGTTTTCTGC 59.326 47.619 19.55 8.18 0.00 4.26
4639 5168 0.588252 GATCGATTGGTTGCCCATCG 59.412 55.000 13.35 13.35 41.49 3.84
4658 5187 4.678509 TCGTCCATCCTCAAATTTTTCG 57.321 40.909 0.00 0.00 0.00 3.46
4665 5196 7.384932 GTCCATCCTCAAATTTTTCGAAAATGT 59.615 33.333 23.05 12.73 0.00 2.71
4671 5202 7.683676 CCTCAAATTTTTCGAAAATGTTATGCG 59.316 33.333 23.05 12.60 0.00 4.73
4676 5207 7.687005 TTTTTCGAAAATGTTATGCGACTTT 57.313 28.000 23.05 0.00 0.00 2.66
4698 5229 2.699846 AGTGTTTGGAATGTGCAACCAT 59.300 40.909 0.00 0.00 34.36 3.55
4719 5250 6.712998 ACCATACAGTTGTACATTGCTAAACA 59.287 34.615 0.00 0.00 32.72 2.83
4766 5302 2.027929 TGCCAATACCCCCGTTATATCG 60.028 50.000 0.00 0.00 0.00 2.92
4781 5317 6.748198 CCGTTATATCGAAGATTCTAAGGCTC 59.252 42.308 4.77 0.00 45.12 4.70
4782 5318 7.306213 CGTTATATCGAAGATTCTAAGGCTCA 58.694 38.462 0.00 0.00 45.12 4.26
4791 5327 6.613153 AGATTCTAAGGCTCACTTTGTAGT 57.387 37.500 0.00 0.00 40.64 2.73
4792 5328 7.010339 AGATTCTAAGGCTCACTTTGTAGTT 57.990 36.000 0.00 0.00 40.64 2.24
4793 5329 8.135382 AGATTCTAAGGCTCACTTTGTAGTTA 57.865 34.615 0.00 0.00 40.64 2.24
4794 5330 8.254508 AGATTCTAAGGCTCACTTTGTAGTTAG 58.745 37.037 0.00 0.00 40.64 2.34
4795 5331 6.912951 TCTAAGGCTCACTTTGTAGTTAGT 57.087 37.500 0.00 0.00 40.64 2.24
4796 5332 8.413309 TTCTAAGGCTCACTTTGTAGTTAGTA 57.587 34.615 0.00 0.00 40.64 1.82
4797 5333 7.824672 TCTAAGGCTCACTTTGTAGTTAGTAC 58.175 38.462 0.00 0.00 40.64 2.73
4798 5334 6.415206 AAGGCTCACTTTGTAGTTAGTACA 57.585 37.500 0.00 0.00 40.06 2.90
4799 5335 6.607004 AGGCTCACTTTGTAGTTAGTACAT 57.393 37.500 0.33 0.00 41.45 2.29
4800 5336 7.713734 AGGCTCACTTTGTAGTTAGTACATA 57.286 36.000 0.33 0.00 41.45 2.29
4801 5337 7.773149 AGGCTCACTTTGTAGTTAGTACATAG 58.227 38.462 13.52 13.52 43.03 2.23
4803 5339 8.033626 GGCTCACTTTGTAGTTAGTACATAGTT 58.966 37.037 16.73 4.61 46.10 2.24
4804 5340 8.861101 GCTCACTTTGTAGTTAGTACATAGTTG 58.139 37.037 16.73 14.02 46.10 3.16
4810 5346 9.903682 TTTGTAGTTAGTACATAGTTGAGACAC 57.096 33.333 0.33 0.00 41.45 3.67
4811 5347 8.859236 TGTAGTTAGTACATAGTTGAGACACT 57.141 34.615 0.00 0.00 36.67 3.55
4812 5348 9.293404 TGTAGTTAGTACATAGTTGAGACACTT 57.707 33.333 0.00 0.00 36.67 3.16
4815 5351 9.517868 AGTTAGTACATAGTTGAGACACTTACT 57.482 33.333 0.00 0.00 0.00 2.24
4819 5355 9.477484 AGTACATAGTTGAGACACTTACTTTTG 57.523 33.333 0.00 0.00 0.00 2.44
4820 5356 7.730364 ACATAGTTGAGACACTTACTTTTGG 57.270 36.000 0.00 0.00 0.00 3.28
4821 5357 6.710744 ACATAGTTGAGACACTTACTTTTGGG 59.289 38.462 0.00 0.00 0.00 4.12
4822 5358 5.367945 AGTTGAGACACTTACTTTTGGGA 57.632 39.130 0.00 0.00 0.00 4.37
4823 5359 5.123936 AGTTGAGACACTTACTTTTGGGAC 58.876 41.667 0.00 0.00 0.00 4.46
4824 5360 3.724374 TGAGACACTTACTTTTGGGACG 58.276 45.455 0.00 0.00 0.00 4.79
4825 5361 3.064931 GAGACACTTACTTTTGGGACGG 58.935 50.000 0.00 0.00 0.00 4.79
4826 5362 2.701951 AGACACTTACTTTTGGGACGGA 59.298 45.455 0.00 0.00 0.00 4.69
4827 5363 3.064931 GACACTTACTTTTGGGACGGAG 58.935 50.000 0.00 0.00 0.00 4.63
4828 5364 2.701951 ACACTTACTTTTGGGACGGAGA 59.298 45.455 0.00 0.00 0.00 3.71
4829 5365 3.326880 ACACTTACTTTTGGGACGGAGAT 59.673 43.478 0.00 0.00 0.00 2.75
4830 5366 3.684788 CACTTACTTTTGGGACGGAGATG 59.315 47.826 0.00 0.00 0.00 2.90
4831 5367 3.326880 ACTTACTTTTGGGACGGAGATGT 59.673 43.478 0.00 0.00 0.00 3.06
4832 5368 2.474410 ACTTTTGGGACGGAGATGTC 57.526 50.000 0.00 0.00 38.17 3.06
4833 5369 1.697432 ACTTTTGGGACGGAGATGTCA 59.303 47.619 0.00 0.00 40.72 3.58
4834 5370 2.105821 ACTTTTGGGACGGAGATGTCAA 59.894 45.455 0.00 0.00 40.72 3.18
4835 5371 2.940994 TTTGGGACGGAGATGTCAAA 57.059 45.000 0.00 0.00 40.72 2.69
4836 5372 2.178912 TTGGGACGGAGATGTCAAAC 57.821 50.000 0.00 0.00 40.72 2.93
4837 5373 1.052617 TGGGACGGAGATGTCAAACA 58.947 50.000 0.00 0.00 40.72 2.83
4838 5374 1.628340 TGGGACGGAGATGTCAAACAT 59.372 47.619 0.00 0.00 42.43 2.71
4839 5375 2.009774 GGGACGGAGATGTCAAACATG 58.990 52.381 0.00 0.00 39.27 3.21
4840 5376 1.398390 GGACGGAGATGTCAAACATGC 59.602 52.381 0.00 0.00 39.27 4.06
4841 5377 2.350522 GACGGAGATGTCAAACATGCT 58.649 47.619 0.00 0.00 39.27 3.79
4842 5378 3.521560 GACGGAGATGTCAAACATGCTA 58.478 45.455 0.00 0.00 39.27 3.49
4843 5379 4.122776 GACGGAGATGTCAAACATGCTAT 58.877 43.478 0.00 0.00 39.27 2.97
4844 5380 4.122776 ACGGAGATGTCAAACATGCTATC 58.877 43.478 0.00 0.00 39.27 2.08
4845 5381 4.122046 CGGAGATGTCAAACATGCTATCA 58.878 43.478 0.00 0.00 39.27 2.15
4846 5382 4.025396 CGGAGATGTCAAACATGCTATCAC 60.025 45.833 0.00 0.00 39.27 3.06
4847 5383 4.274459 GGAGATGTCAAACATGCTATCACC 59.726 45.833 0.00 0.00 39.27 4.02
4848 5384 5.108187 AGATGTCAAACATGCTATCACCT 57.892 39.130 0.00 0.00 39.27 4.00
4849 5385 4.880120 AGATGTCAAACATGCTATCACCTG 59.120 41.667 0.00 0.00 39.27 4.00
4850 5386 4.019792 TGTCAAACATGCTATCACCTGT 57.980 40.909 0.00 0.00 0.00 4.00
4851 5387 4.002982 TGTCAAACATGCTATCACCTGTC 58.997 43.478 0.00 0.00 0.00 3.51
4852 5388 4.002982 GTCAAACATGCTATCACCTGTCA 58.997 43.478 0.00 0.00 0.00 3.58
4853 5389 4.002982 TCAAACATGCTATCACCTGTCAC 58.997 43.478 0.00 0.00 0.00 3.67
4854 5390 2.299993 ACATGCTATCACCTGTCACG 57.700 50.000 0.00 0.00 0.00 4.35
4855 5391 1.550524 ACATGCTATCACCTGTCACGT 59.449 47.619 0.00 0.00 0.00 4.49
4856 5392 2.758423 ACATGCTATCACCTGTCACGTA 59.242 45.455 0.00 0.00 0.00 3.57
4857 5393 3.384789 ACATGCTATCACCTGTCACGTAT 59.615 43.478 0.00 0.00 0.00 3.06
4858 5394 3.436700 TGCTATCACCTGTCACGTATG 57.563 47.619 0.00 0.00 0.00 2.39
4859 5395 3.020984 TGCTATCACCTGTCACGTATGA 58.979 45.455 0.00 0.00 0.00 2.15
4860 5396 3.636764 TGCTATCACCTGTCACGTATGAT 59.363 43.478 0.00 0.00 37.14 2.45
4861 5397 4.825085 TGCTATCACCTGTCACGTATGATA 59.175 41.667 0.00 0.00 37.14 2.15
4862 5398 5.476945 TGCTATCACCTGTCACGTATGATAT 59.523 40.000 0.00 0.00 37.14 1.63
4947 5494 8.677871 TCTATCTTCTCCCTGAATATCTCTCTT 58.322 37.037 0.00 0.00 33.71 2.85
4948 5495 9.312904 CTATCTTCTCCCTGAATATCTCTCTTT 57.687 37.037 0.00 0.00 33.71 2.52
4956 5503 8.007153 TCCCTGAATATCTCTCTTTCTCACATA 58.993 37.037 0.00 0.00 0.00 2.29
4967 5517 8.648557 TCTCTTTCTCACATATAATCCAAACG 57.351 34.615 0.00 0.00 0.00 3.60
5019 5575 5.001232 CCCACTATATTAACATGAACCCGG 58.999 45.833 0.00 0.00 0.00 5.73
5085 5642 1.216427 AGAGCCATCCTTTTCCCATCC 59.784 52.381 0.00 0.00 0.00 3.51
5089 5646 2.624029 GCCATCCTTTTCCCATCCAAGA 60.624 50.000 0.00 0.00 0.00 3.02
5116 5673 2.091775 ACGAACTCCATCTAGCCCTAGT 60.092 50.000 0.00 0.00 34.84 2.57
5336 5899 2.204151 CCCAACCCTCTCCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
5375 5938 2.023404 TCAGCAGGTCCTTGGATACCTA 60.023 50.000 0.00 0.00 44.43 3.08
5393 5956 0.739462 TACTGAACAATCTGGCGCGG 60.739 55.000 8.83 0.00 0.00 6.46
5469 6032 0.321564 CACCGGCATGTTCTCCTTGA 60.322 55.000 0.00 0.00 0.00 3.02
5492 6055 4.895854 GCAAGCCGCATCAACAAT 57.104 50.000 0.00 0.00 41.79 2.71
5495 6058 2.813061 GCAAGCCGCATCAACAATATT 58.187 42.857 0.00 0.00 41.79 1.28
5704 6287 2.172082 TGAGCTCTTTGCCATGCTATCT 59.828 45.455 16.19 0.00 44.23 1.98
5705 6288 2.548904 GAGCTCTTTGCCATGCTATCTG 59.451 50.000 6.43 0.00 44.23 2.90
5831 6417 2.646121 CCCTCTTGCAACAAGGGTC 58.354 57.895 25.08 0.00 44.11 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.123620 CGCAGGAGAGCAAGGTGC 61.124 66.667 0.00 0.00 45.46 5.01
8 9 1.739562 GTCGCAGGAGAGCAAGGTG 60.740 63.158 0.00 0.00 0.00 4.00
9 10 1.758440 TTGTCGCAGGAGAGCAAGGT 61.758 55.000 0.00 0.00 0.00 3.50
10 11 0.392193 ATTGTCGCAGGAGAGCAAGG 60.392 55.000 0.00 0.00 0.00 3.61
11 12 1.005340 GATTGTCGCAGGAGAGCAAG 58.995 55.000 0.00 0.00 0.00 4.01
12 13 0.321346 TGATTGTCGCAGGAGAGCAA 59.679 50.000 0.00 0.00 0.00 3.91
13 14 0.108472 CTGATTGTCGCAGGAGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
14 15 2.675519 CTGATTGTCGCAGGAGAGC 58.324 57.895 0.00 0.00 0.00 4.09
20 21 1.153289 CCCTCCCTGATTGTCGCAG 60.153 63.158 0.00 0.00 0.00 5.18
21 22 1.918293 ACCCTCCCTGATTGTCGCA 60.918 57.895 0.00 0.00 0.00 5.10
22 23 1.450312 CACCCTCCCTGATTGTCGC 60.450 63.158 0.00 0.00 0.00 5.19
23 24 0.176680 CTCACCCTCCCTGATTGTCG 59.823 60.000 0.00 0.00 0.00 4.35
24 25 1.484240 CTCTCACCCTCCCTGATTGTC 59.516 57.143 0.00 0.00 0.00 3.18
25 26 1.577736 CTCTCACCCTCCCTGATTGT 58.422 55.000 0.00 0.00 0.00 2.71
26 27 0.835941 CCTCTCACCCTCCCTGATTG 59.164 60.000 0.00 0.00 0.00 2.67
27 28 0.719015 TCCTCTCACCCTCCCTGATT 59.281 55.000 0.00 0.00 0.00 2.57
28 29 0.948050 ATCCTCTCACCCTCCCTGAT 59.052 55.000 0.00 0.00 0.00 2.90
29 30 0.031716 CATCCTCTCACCCTCCCTGA 60.032 60.000 0.00 0.00 0.00 3.86
30 31 1.694133 GCATCCTCTCACCCTCCCTG 61.694 65.000 0.00 0.00 0.00 4.45
31 32 1.383803 GCATCCTCTCACCCTCCCT 60.384 63.158 0.00 0.00 0.00 4.20
32 33 1.690633 TGCATCCTCTCACCCTCCC 60.691 63.158 0.00 0.00 0.00 4.30
33 34 0.689080 TCTGCATCCTCTCACCCTCC 60.689 60.000 0.00 0.00 0.00 4.30
34 35 0.752054 CTCTGCATCCTCTCACCCTC 59.248 60.000 0.00 0.00 0.00 4.30
35 36 0.690411 CCTCTGCATCCTCTCACCCT 60.690 60.000 0.00 0.00 0.00 4.34
36 37 0.689080 TCCTCTGCATCCTCTCACCC 60.689 60.000 0.00 0.00 0.00 4.61
37 38 1.198713 TTCCTCTGCATCCTCTCACC 58.801 55.000 0.00 0.00 0.00 4.02
38 39 2.699846 AGATTCCTCTGCATCCTCTCAC 59.300 50.000 0.00 0.00 0.00 3.51
39 40 3.043465 AGATTCCTCTGCATCCTCTCA 57.957 47.619 0.00 0.00 0.00 3.27
40 41 3.258123 GGTAGATTCCTCTGCATCCTCTC 59.742 52.174 0.00 0.00 35.96 3.20
41 42 3.238597 GGTAGATTCCTCTGCATCCTCT 58.761 50.000 0.00 0.00 35.96 3.69
42 43 2.301583 GGGTAGATTCCTCTGCATCCTC 59.698 54.545 0.00 0.00 35.96 3.71
43 44 2.334023 GGGTAGATTCCTCTGCATCCT 58.666 52.381 0.00 0.00 35.96 3.24
44 45 2.038295 CTGGGTAGATTCCTCTGCATCC 59.962 54.545 0.00 0.00 35.96 3.51
45 46 2.968574 TCTGGGTAGATTCCTCTGCATC 59.031 50.000 0.00 0.00 35.96 3.91
46 47 2.971330 CTCTGGGTAGATTCCTCTGCAT 59.029 50.000 0.00 0.00 35.96 3.96
47 48 2.023984 TCTCTGGGTAGATTCCTCTGCA 60.024 50.000 0.00 0.00 35.96 4.41
48 49 2.627699 CTCTCTGGGTAGATTCCTCTGC 59.372 54.545 0.00 0.00 33.71 4.26
49 50 4.177537 TCTCTCTGGGTAGATTCCTCTG 57.822 50.000 0.00 0.00 32.66 3.35
50 51 4.449081 CCATCTCTCTGGGTAGATTCCTCT 60.449 50.000 0.00 0.00 29.93 3.69
51 52 3.831911 CCATCTCTCTGGGTAGATTCCTC 59.168 52.174 0.00 0.00 29.93 3.71
52 53 3.855668 CCATCTCTCTGGGTAGATTCCT 58.144 50.000 0.00 0.00 29.93 3.36
62 63 0.317799 CGATCTGCCCATCTCTCTGG 59.682 60.000 0.00 0.00 35.95 3.86
63 64 0.317799 CCGATCTGCCCATCTCTCTG 59.682 60.000 0.00 0.00 0.00 3.35
64 65 1.470996 GCCGATCTGCCCATCTCTCT 61.471 60.000 0.00 0.00 0.00 3.10
65 66 1.005156 GCCGATCTGCCCATCTCTC 60.005 63.158 0.00 0.00 0.00 3.20
66 67 2.515071 GGCCGATCTGCCCATCTCT 61.515 63.158 16.84 0.00 46.11 3.10
67 68 2.031768 GGCCGATCTGCCCATCTC 59.968 66.667 16.84 0.00 46.11 2.75
74 75 4.521062 ACGCTGAGGCCGATCTGC 62.521 66.667 12.29 12.29 39.86 4.26
75 76 1.021390 AAAACGCTGAGGCCGATCTG 61.021 55.000 0.00 0.00 34.44 2.90
76 77 0.535335 TAAAACGCTGAGGCCGATCT 59.465 50.000 0.00 0.00 34.44 2.75
77 78 0.651031 GTAAAACGCTGAGGCCGATC 59.349 55.000 0.00 0.00 34.44 3.69
78 79 1.082117 CGTAAAACGCTGAGGCCGAT 61.082 55.000 0.00 0.00 33.65 4.18
79 80 1.735198 CGTAAAACGCTGAGGCCGA 60.735 57.895 0.00 0.00 33.65 5.54
80 81 2.776072 CGTAAAACGCTGAGGCCG 59.224 61.111 0.00 0.00 33.65 6.13
107 108 3.140814 GAACCCCTGCATTCCGGC 61.141 66.667 0.00 0.00 0.00 6.13
108 109 2.824041 CGAACCCCTGCATTCCGG 60.824 66.667 0.00 0.00 0.00 5.14
109 110 3.508840 GCGAACCCCTGCATTCCG 61.509 66.667 0.00 0.00 0.00 4.30
110 111 3.508840 CGCGAACCCCTGCATTCC 61.509 66.667 0.00 0.00 0.00 3.01
111 112 4.179579 GCGCGAACCCCTGCATTC 62.180 66.667 12.10 0.00 0.00 2.67
131 132 0.101939 GCTAATGGAAAGCAGCAGGC 59.898 55.000 0.00 0.00 45.30 4.85
132 133 1.674962 GAGCTAATGGAAAGCAGCAGG 59.325 52.381 0.00 0.00 42.62 4.85
133 134 2.362736 TGAGCTAATGGAAAGCAGCAG 58.637 47.619 0.00 0.00 42.62 4.24
134 135 2.495155 TGAGCTAATGGAAAGCAGCA 57.505 45.000 0.00 0.00 42.62 4.41
135 136 3.855689 TTTGAGCTAATGGAAAGCAGC 57.144 42.857 0.00 0.00 42.62 5.25
136 137 4.095483 ACGATTTGAGCTAATGGAAAGCAG 59.905 41.667 0.00 0.00 42.62 4.24
137 138 4.009675 ACGATTTGAGCTAATGGAAAGCA 58.990 39.130 0.00 0.00 42.62 3.91
138 139 4.622701 ACGATTTGAGCTAATGGAAAGC 57.377 40.909 0.00 0.00 40.40 3.51
139 140 5.801947 CCAAACGATTTGAGCTAATGGAAAG 59.198 40.000 10.71 0.00 43.26 2.62
140 141 5.708948 CCAAACGATTTGAGCTAATGGAAA 58.291 37.500 10.71 0.00 43.26 3.13
141 142 4.380444 GCCAAACGATTTGAGCTAATGGAA 60.380 41.667 10.71 0.00 43.26 3.53
142 143 3.128589 GCCAAACGATTTGAGCTAATGGA 59.871 43.478 10.71 0.00 43.26 3.41
143 144 3.129287 AGCCAAACGATTTGAGCTAATGG 59.871 43.478 16.56 0.00 41.82 3.16
144 145 4.100529 CAGCCAAACGATTTGAGCTAATG 58.899 43.478 17.12 9.31 41.76 1.90
145 146 3.758554 ACAGCCAAACGATTTGAGCTAAT 59.241 39.130 17.12 0.00 41.76 1.73
146 147 3.146066 ACAGCCAAACGATTTGAGCTAA 58.854 40.909 17.12 0.00 41.76 3.09
147 148 2.778299 ACAGCCAAACGATTTGAGCTA 58.222 42.857 17.12 0.00 41.76 3.32
148 149 1.609208 ACAGCCAAACGATTTGAGCT 58.391 45.000 10.71 12.82 43.26 4.09
149 150 2.053627 CAACAGCCAAACGATTTGAGC 58.946 47.619 10.71 11.35 43.26 4.26
150 151 3.044986 CACAACAGCCAAACGATTTGAG 58.955 45.455 10.71 4.35 43.26 3.02
151 152 2.797792 GCACAACAGCCAAACGATTTGA 60.798 45.455 10.71 0.00 43.26 2.69
152 153 1.522258 GCACAACAGCCAAACGATTTG 59.478 47.619 0.00 0.00 40.32 2.32
153 154 1.135915 TGCACAACAGCCAAACGATTT 59.864 42.857 0.00 0.00 0.00 2.17
154 155 0.743688 TGCACAACAGCCAAACGATT 59.256 45.000 0.00 0.00 0.00 3.34
155 156 0.311790 CTGCACAACAGCCAAACGAT 59.688 50.000 0.00 0.00 40.19 3.73
156 157 0.746204 TCTGCACAACAGCCAAACGA 60.746 50.000 0.00 0.00 46.76 3.85
157 158 0.100325 TTCTGCACAACAGCCAAACG 59.900 50.000 0.00 0.00 46.76 3.60
158 159 2.292103 TTTCTGCACAACAGCCAAAC 57.708 45.000 0.00 0.00 46.76 2.93
159 160 3.196463 CAATTTCTGCACAACAGCCAAA 58.804 40.909 0.00 0.00 46.76 3.28
160 161 2.483363 CCAATTTCTGCACAACAGCCAA 60.483 45.455 0.00 0.00 46.76 4.52
161 162 1.068895 CCAATTTCTGCACAACAGCCA 59.931 47.619 0.00 0.00 46.76 4.75
162 163 1.787012 CCAATTTCTGCACAACAGCC 58.213 50.000 0.00 0.00 46.76 4.85
163 164 1.142474 GCCAATTTCTGCACAACAGC 58.858 50.000 0.00 0.00 46.76 4.40
165 166 2.030007 GCTAGCCAATTTCTGCACAACA 60.030 45.455 2.29 0.00 0.00 3.33
166 167 2.030007 TGCTAGCCAATTTCTGCACAAC 60.030 45.455 13.29 0.00 0.00 3.32
167 168 2.237643 TGCTAGCCAATTTCTGCACAA 58.762 42.857 13.29 0.00 0.00 3.33
168 169 1.908344 TGCTAGCCAATTTCTGCACA 58.092 45.000 13.29 0.00 0.00 4.57
307 315 2.159043 GCATCCTCGAGATCAAGGTCAA 60.159 50.000 15.71 0.00 34.12 3.18
309 317 1.410517 TGCATCCTCGAGATCAAGGTC 59.589 52.381 15.71 0.00 34.12 3.85
311 319 2.609427 TTGCATCCTCGAGATCAAGG 57.391 50.000 15.71 0.00 30.59 3.61
313 321 4.095334 CACAATTTGCATCCTCGAGATCAA 59.905 41.667 15.71 9.03 30.59 2.57
350 358 4.079443 AGGCTTAATTATACAGGGGCACAA 60.079 41.667 0.00 0.00 0.00 3.33
379 387 5.182487 CCATTTAAATTAACCAGTTGGCCC 58.818 41.667 0.00 0.00 39.32 5.80
407 415 4.715896 CATAATTGCATATGACAGGACGC 58.284 43.478 6.97 0.00 35.69 5.19
557 566 4.362677 AGAGCCATAGTGGAGTAAAAGGA 58.637 43.478 0.00 0.00 40.96 3.36
669 742 4.829492 AGCATTAGGAATTATGGCCAGTTC 59.171 41.667 13.05 15.01 0.00 3.01
755 835 3.788227 TGGTCCATGTTACTGCTTCTT 57.212 42.857 0.00 0.00 0.00 2.52
788 868 1.138859 CAGAGACCTTGGTGTCACACA 59.861 52.381 17.39 0.00 37.73 3.72
789 869 1.871080 CAGAGACCTTGGTGTCACAC 58.129 55.000 17.39 0.00 37.73 3.82
790 870 0.106708 GCAGAGACCTTGGTGTCACA 59.893 55.000 17.39 0.00 37.73 3.58
791 871 0.603975 GGCAGAGACCTTGGTGTCAC 60.604 60.000 17.39 9.72 37.73 3.67
792 872 1.053835 TGGCAGAGACCTTGGTGTCA 61.054 55.000 17.39 0.00 37.73 3.58
845 925 4.477975 CAGGTCTCCGGTCGTCGC 62.478 72.222 0.00 0.00 37.59 5.19
879 959 4.901197 TGTGTATTCCAAGTGGCTCTAA 57.099 40.909 0.00 0.00 34.44 2.10
919 999 2.301738 GGCAGCCAAGTAGGGGAGT 61.302 63.158 6.55 0.00 38.09 3.85
926 1006 1.479323 CTACTTACCGGCAGCCAAGTA 59.521 52.381 17.74 17.74 33.47 2.24
967 1048 9.812347 TCCCATCATACAAGCAGATTAAATTAT 57.188 29.630 0.00 0.00 0.00 1.28
980 1061 3.434641 GCGATCACATCCCATCATACAAG 59.565 47.826 0.00 0.00 0.00 3.16
984 1065 1.618343 ACGCGATCACATCCCATCATA 59.382 47.619 15.93 0.00 0.00 2.15
1001 1082 5.383130 GGTCTTCTGTTAAAGATGAAACGC 58.617 41.667 0.00 0.00 39.92 4.84
1002 1083 5.404366 TCGGTCTTCTGTTAAAGATGAAACG 59.596 40.000 7.07 7.07 39.92 3.60
1006 1087 4.220821 AGCTCGGTCTTCTGTTAAAGATGA 59.779 41.667 0.00 0.00 37.59 2.92
1073 1154 1.975327 CAACCGAGAGAGGAAGGCA 59.025 57.895 0.00 0.00 34.73 4.75
1104 1185 2.032799 GCAATGTCGACACAAACCTTGA 59.967 45.455 22.71 0.00 35.64 3.02
1242 1326 6.262944 CCTTCTATTATTGTGCCATACAGCAA 59.737 38.462 0.00 0.00 46.19 3.91
1264 1348 5.867903 TGTGATGAACAATTGTTTCCCTT 57.132 34.783 24.02 10.31 38.56 3.95
1358 1698 2.846206 TGTTGACCTTCATGGGCTCTAT 59.154 45.455 0.00 0.00 46.68 1.98
1369 1709 1.552792 CTCCTCTCCCTGTTGACCTTC 59.447 57.143 0.00 0.00 0.00 3.46
1465 1836 2.487762 ACTTGCATGGTCCATGTTTACG 59.512 45.455 28.66 16.82 43.10 3.18
1469 1840 1.614903 CACACTTGCATGGTCCATGTT 59.385 47.619 28.66 11.52 43.10 2.71
1605 1976 7.647318 TGCACTAACTGTATGAAATTGTGTTTG 59.353 33.333 0.00 0.00 0.00 2.93
1660 2037 3.559655 TCACCATATAATGTGAAGCGTGC 59.440 43.478 5.49 0.00 0.00 5.34
1664 2041 7.376866 CGATTTGTTCACCATATAATGTGAAGC 59.623 37.037 16.44 12.88 36.64 3.86
1681 2058 2.882137 TGAAGGGGACAACGATTTGTTC 59.118 45.455 0.00 0.00 46.43 3.18
1690 2067 3.421844 AGCTACAAATGAAGGGGACAAC 58.578 45.455 0.00 0.00 0.00 3.32
1709 2086 9.680315 ACAGACTATATTTTCGTCAATAGTAGC 57.320 33.333 0.00 0.00 35.75 3.58
1753 2130 2.961522 TTCTTTGCGATGGACGAAAC 57.038 45.000 0.00 0.00 45.77 2.78
1827 2229 6.037500 TGCGAAGATCAATAGAGACCAAAATG 59.962 38.462 0.00 0.00 0.00 2.32
1935 2337 5.122239 ACTCATGTTTGAATATGTGGTGACG 59.878 40.000 0.00 0.00 0.00 4.35
2123 2525 6.098124 TGTTGGAGAATTTCAAGGTTGTGATT 59.902 34.615 0.00 0.00 0.00 2.57
2178 2580 0.673644 CTCCCGCCGAGTTTCATTGT 60.674 55.000 0.00 0.00 33.51 2.71
2416 2841 2.939103 GTGCCAATCATGTCCACTAGAC 59.061 50.000 0.00 0.00 46.51 2.59
2476 2901 7.260603 GTTCCAATTCCTCATGAAGGTATTTG 58.739 38.462 10.97 9.19 41.06 2.32
2632 3063 6.204688 TGGAGAACAACTAAGCTTACATTGTG 59.795 38.462 22.94 8.74 33.88 3.33
2785 3223 7.538678 CACAAAAGCTGAATATGTCCAACTTAC 59.461 37.037 0.00 0.00 0.00 2.34
2865 3303 6.320672 AGCTCAATGAATTGTTGGGAAGATAG 59.679 38.462 4.61 0.00 38.84 2.08
3026 3484 4.030216 TGTATGCAATAGGACTCCAGTGA 58.970 43.478 0.00 0.00 0.00 3.41
3137 3595 4.627058 TGACTTGCATTTTCTGTCTCGTA 58.373 39.130 0.00 0.00 0.00 3.43
3252 3710 4.549458 CATTGGCCAAATATTTCTAGGCG 58.451 43.478 24.71 4.80 46.12 5.52
3393 3883 7.224557 CAGATTTTTCCCCGGCTTAATTAATTG 59.775 37.037 11.05 0.00 0.00 2.32
3663 4174 3.263425 GCGGATTTGGAATATCCCCTCTA 59.737 47.826 0.00 0.00 38.68 2.43
3910 4422 3.348236 GCCATAATGCAGAGGCCG 58.652 61.111 9.59 0.00 41.25 6.13
4074 4586 4.474226 AGCAATTCTCTGTTTCGTTCAC 57.526 40.909 0.00 0.00 0.00 3.18
4078 4590 3.632145 ACCAAAGCAATTCTCTGTTTCGT 59.368 39.130 0.00 0.00 0.00 3.85
4144 4656 1.299316 CGTGCCTTGTGTTTGCCAG 60.299 57.895 0.00 0.00 0.00 4.85
4145 4657 2.780094 CCGTGCCTTGTGTTTGCCA 61.780 57.895 0.00 0.00 0.00 4.92
4158 4670 1.359475 GTAGTCGATCCTCCCGTGC 59.641 63.158 0.00 0.00 0.00 5.34
4173 4685 2.544685 CAGGTTCAATGCCTCTCGTAG 58.455 52.381 0.00 0.00 33.31 3.51
4186 4698 1.480212 ATGCTCGTCCACCAGGTTCA 61.480 55.000 0.00 0.00 35.89 3.18
4216 4728 1.554617 TGACATGCCTGGAAGAATCGA 59.445 47.619 0.00 0.00 34.07 3.59
4220 4732 1.704628 TCCTTGACATGCCTGGAAGAA 59.295 47.619 0.00 0.00 34.07 2.52
4221 4733 1.361204 TCCTTGACATGCCTGGAAGA 58.639 50.000 0.00 0.00 34.07 2.87
4230 4742 3.199508 AGGGACTTCAGATCCTTGACATG 59.800 47.826 0.00 0.00 36.40 3.21
4240 4752 0.824759 GCCGTACAGGGACTTCAGAT 59.175 55.000 6.00 0.00 41.48 2.90
4296 4814 1.757340 GGTAGAGGGTGTCTCCGGG 60.757 68.421 0.00 0.00 43.44 5.73
4397 4915 2.516930 GCCCGGTGGATGTGATGG 60.517 66.667 0.00 0.00 0.00 3.51
4418 4936 0.105964 CACCCAAACCTGACGACTGA 59.894 55.000 0.00 0.00 0.00 3.41
4419 4937 0.179056 ACACCCAAACCTGACGACTG 60.179 55.000 0.00 0.00 0.00 3.51
4432 4950 1.138568 TTTTTCCCTCGGTACACCCA 58.861 50.000 0.00 0.00 0.00 4.51
4459 4988 3.838317 ACTATGTAGTCCTTGTCTTGGCA 59.162 43.478 0.00 0.00 0.00 4.92
4504 5033 2.639286 CTTGTTGCGGTGCCAGAC 59.361 61.111 0.00 0.00 0.00 3.51
4532 5061 8.643324 ATTGATTACAACTAGGATGTACTCCTC 58.357 37.037 14.75 10.76 43.94 3.71
4533 5062 8.554490 ATTGATTACAACTAGGATGTACTCCT 57.446 34.615 17.75 15.41 46.53 3.69
4639 5168 7.384932 ACATTTTCGAAAAATTTGAGGATGGAC 59.615 33.333 25.77 0.00 0.00 4.02
4658 5187 8.417176 CAAACACTAAAGTCGCATAACATTTTC 58.583 33.333 0.00 0.00 0.00 2.29
4665 5196 6.205853 ACATTCCAAACACTAAAGTCGCATAA 59.794 34.615 0.00 0.00 0.00 1.90
4671 5202 5.181690 TGCACATTCCAAACACTAAAGTC 57.818 39.130 0.00 0.00 0.00 3.01
4676 5207 3.291584 TGGTTGCACATTCCAAACACTA 58.708 40.909 0.00 0.00 35.15 2.74
4698 5229 7.971183 TCATGTTTAGCAATGTACAACTGTA 57.029 32.000 0.00 0.00 0.00 2.74
4766 5302 7.100409 ACTACAAAGTGAGCCTTAGAATCTTC 58.900 38.462 0.00 0.00 33.57 2.87
4793 5329 9.477484 CAAAAGTAAGTGTCTCAACTATGTACT 57.523 33.333 0.00 0.00 0.00 2.73
4794 5330 8.709646 CCAAAAGTAAGTGTCTCAACTATGTAC 58.290 37.037 0.00 0.00 0.00 2.90
4795 5331 7.876068 CCCAAAAGTAAGTGTCTCAACTATGTA 59.124 37.037 0.00 0.00 0.00 2.29
4796 5332 6.710744 CCCAAAAGTAAGTGTCTCAACTATGT 59.289 38.462 0.00 0.00 0.00 2.29
4797 5333 6.934645 TCCCAAAAGTAAGTGTCTCAACTATG 59.065 38.462 0.00 0.00 0.00 2.23
4798 5334 6.935208 GTCCCAAAAGTAAGTGTCTCAACTAT 59.065 38.462 0.00 0.00 0.00 2.12
4799 5335 6.285990 GTCCCAAAAGTAAGTGTCTCAACTA 58.714 40.000 0.00 0.00 0.00 2.24
4800 5336 5.123936 GTCCCAAAAGTAAGTGTCTCAACT 58.876 41.667 0.00 0.00 0.00 3.16
4801 5337 4.025145 CGTCCCAAAAGTAAGTGTCTCAAC 60.025 45.833 0.00 0.00 0.00 3.18
4802 5338 4.124238 CGTCCCAAAAGTAAGTGTCTCAA 58.876 43.478 0.00 0.00 0.00 3.02
4803 5339 3.493699 CCGTCCCAAAAGTAAGTGTCTCA 60.494 47.826 0.00 0.00 0.00 3.27
4804 5340 3.064931 CCGTCCCAAAAGTAAGTGTCTC 58.935 50.000 0.00 0.00 0.00 3.36
4805 5341 2.701951 TCCGTCCCAAAAGTAAGTGTCT 59.298 45.455 0.00 0.00 0.00 3.41
4806 5342 3.064931 CTCCGTCCCAAAAGTAAGTGTC 58.935 50.000 0.00 0.00 0.00 3.67
4807 5343 2.701951 TCTCCGTCCCAAAAGTAAGTGT 59.298 45.455 0.00 0.00 0.00 3.55
4808 5344 3.396260 TCTCCGTCCCAAAAGTAAGTG 57.604 47.619 0.00 0.00 0.00 3.16
4809 5345 3.326880 ACATCTCCGTCCCAAAAGTAAGT 59.673 43.478 0.00 0.00 0.00 2.24
4810 5346 3.933332 GACATCTCCGTCCCAAAAGTAAG 59.067 47.826 0.00 0.00 0.00 2.34
4811 5347 3.325425 TGACATCTCCGTCCCAAAAGTAA 59.675 43.478 0.00 0.00 34.88 2.24
4812 5348 2.901192 TGACATCTCCGTCCCAAAAGTA 59.099 45.455 0.00 0.00 34.88 2.24
4813 5349 1.697432 TGACATCTCCGTCCCAAAAGT 59.303 47.619 0.00 0.00 34.88 2.66
4814 5350 2.472695 TGACATCTCCGTCCCAAAAG 57.527 50.000 0.00 0.00 34.88 2.27
4815 5351 2.882137 GTTTGACATCTCCGTCCCAAAA 59.118 45.455 0.00 0.00 34.88 2.44
4816 5352 2.158740 TGTTTGACATCTCCGTCCCAAA 60.159 45.455 0.00 0.00 34.88 3.28
4817 5353 1.418264 TGTTTGACATCTCCGTCCCAA 59.582 47.619 0.00 0.00 34.88 4.12
4818 5354 1.052617 TGTTTGACATCTCCGTCCCA 58.947 50.000 0.00 0.00 34.88 4.37
4819 5355 2.009774 CATGTTTGACATCTCCGTCCC 58.990 52.381 0.00 0.00 36.53 4.46
4820 5356 1.398390 GCATGTTTGACATCTCCGTCC 59.602 52.381 0.00 0.00 36.53 4.79
4821 5357 2.350522 AGCATGTTTGACATCTCCGTC 58.649 47.619 0.00 0.00 36.53 4.79
4822 5358 2.479566 AGCATGTTTGACATCTCCGT 57.520 45.000 0.00 0.00 36.53 4.69
4823 5359 4.025396 GTGATAGCATGTTTGACATCTCCG 60.025 45.833 0.00 0.00 36.53 4.63
4824 5360 4.274459 GGTGATAGCATGTTTGACATCTCC 59.726 45.833 0.00 0.00 36.53 3.71
4825 5361 5.007430 CAGGTGATAGCATGTTTGACATCTC 59.993 44.000 0.00 0.00 36.53 2.75
4826 5362 4.880120 CAGGTGATAGCATGTTTGACATCT 59.120 41.667 0.00 0.00 36.53 2.90
4827 5363 4.637534 ACAGGTGATAGCATGTTTGACATC 59.362 41.667 0.00 0.00 36.53 3.06
4828 5364 4.592942 ACAGGTGATAGCATGTTTGACAT 58.407 39.130 0.00 0.00 39.91 3.06
4829 5365 4.002982 GACAGGTGATAGCATGTTTGACA 58.997 43.478 0.00 0.00 0.00 3.58
4830 5366 4.002982 TGACAGGTGATAGCATGTTTGAC 58.997 43.478 0.00 0.00 0.00 3.18
4831 5367 4.002982 GTGACAGGTGATAGCATGTTTGA 58.997 43.478 0.00 0.00 0.00 2.69
4832 5368 3.181517 CGTGACAGGTGATAGCATGTTTG 60.182 47.826 0.00 0.00 0.00 2.93
4833 5369 3.002791 CGTGACAGGTGATAGCATGTTT 58.997 45.455 0.00 0.00 0.00 2.83
4834 5370 2.028112 ACGTGACAGGTGATAGCATGTT 60.028 45.455 0.00 0.00 0.00 2.71
4835 5371 1.550524 ACGTGACAGGTGATAGCATGT 59.449 47.619 0.00 0.00 0.00 3.21
4836 5372 2.299993 ACGTGACAGGTGATAGCATG 57.700 50.000 0.00 0.00 0.00 4.06
4837 5373 3.636764 TCATACGTGACAGGTGATAGCAT 59.363 43.478 10.99 0.00 0.00 3.79
4838 5374 3.020984 TCATACGTGACAGGTGATAGCA 58.979 45.455 10.99 0.00 0.00 3.49
4839 5375 3.710326 TCATACGTGACAGGTGATAGC 57.290 47.619 10.99 0.00 0.00 2.97
4840 5376 6.325596 CCATATCATACGTGACAGGTGATAG 58.674 44.000 10.99 5.24 37.14 2.08
4841 5377 5.336451 GCCATATCATACGTGACAGGTGATA 60.336 44.000 10.99 10.14 37.14 2.15
4842 5378 4.561530 GCCATATCATACGTGACAGGTGAT 60.562 45.833 10.99 8.41 37.14 3.06
4843 5379 3.243737 GCCATATCATACGTGACAGGTGA 60.244 47.826 10.99 1.29 37.14 4.02
4844 5380 3.059884 GCCATATCATACGTGACAGGTG 58.940 50.000 10.99 0.00 37.14 4.00
4845 5381 2.288213 CGCCATATCATACGTGACAGGT 60.288 50.000 6.01 6.01 37.14 4.00
4846 5382 2.328473 CGCCATATCATACGTGACAGG 58.672 52.381 0.00 0.00 37.14 4.00
4847 5383 1.721389 GCGCCATATCATACGTGACAG 59.279 52.381 0.00 0.00 37.14 3.51
4848 5384 1.067821 TGCGCCATATCATACGTGACA 59.932 47.619 4.18 0.00 37.14 3.58
4849 5385 1.455786 GTGCGCCATATCATACGTGAC 59.544 52.381 4.18 0.00 37.14 3.67
4850 5386 1.604438 GGTGCGCCATATCATACGTGA 60.604 52.381 12.58 0.00 35.05 4.35
4851 5387 0.790207 GGTGCGCCATATCATACGTG 59.210 55.000 12.58 0.00 34.09 4.49
4852 5388 0.679505 AGGTGCGCCATATCATACGT 59.320 50.000 20.59 0.00 37.19 3.57
4853 5389 1.070821 CAGGTGCGCCATATCATACG 58.929 55.000 20.59 0.00 37.19 3.06
4854 5390 1.001974 TCCAGGTGCGCCATATCATAC 59.998 52.381 20.59 0.00 37.19 2.39
4855 5391 1.276138 CTCCAGGTGCGCCATATCATA 59.724 52.381 20.59 0.00 37.19 2.15
4856 5392 0.035881 CTCCAGGTGCGCCATATCAT 59.964 55.000 20.59 0.00 37.19 2.45
4857 5393 1.447217 CTCCAGGTGCGCCATATCA 59.553 57.895 20.59 0.00 37.19 2.15
4858 5394 1.302033 CCTCCAGGTGCGCCATATC 60.302 63.158 20.59 0.00 37.19 1.63
4859 5395 2.831770 CCTCCAGGTGCGCCATAT 59.168 61.111 20.59 0.00 37.19 1.78
4947 5494 5.432645 TGCCGTTTGGATTATATGTGAGAA 58.567 37.500 0.00 0.00 37.49 2.87
4948 5495 5.029807 TGCCGTTTGGATTATATGTGAGA 57.970 39.130 0.00 0.00 37.49 3.27
4989 5542 2.436542 TGTTAATATAGTGGGGCGCACT 59.563 45.455 34.80 34.80 36.74 4.40
5085 5642 3.639094 AGATGGAGTTCGTAGGGATCTTG 59.361 47.826 0.00 0.00 0.00 3.02
5089 5646 3.158676 GCTAGATGGAGTTCGTAGGGAT 58.841 50.000 0.00 0.00 0.00 3.85
5116 5673 1.475403 GTCGGAGGAGGAAGACATGA 58.525 55.000 0.00 0.00 34.09 3.07
5336 5899 1.866269 TGATCCTCCCTGACCCAGATA 59.134 52.381 0.00 0.00 32.44 1.98
5375 5938 2.034879 CCGCGCCAGATTGTTCAGT 61.035 57.895 0.00 0.00 0.00 3.41
5393 5956 4.008933 ACCGTGAGCAGCACCTCC 62.009 66.667 0.00 0.00 44.85 4.30
5436 5999 1.952133 CGGTGAGCGTCGTCCAAAA 60.952 57.895 0.00 0.00 0.00 2.44
5451 6014 0.400213 TTCAAGGAGAACATGCCGGT 59.600 50.000 1.90 0.00 0.00 5.28
5492 6055 4.202223 GCGTTGATGAGGGAGGTTCTAATA 60.202 45.833 0.00 0.00 0.00 0.98
5495 6058 1.480954 GCGTTGATGAGGGAGGTTCTA 59.519 52.381 0.00 0.00 0.00 2.10
5590 6154 0.598680 GTCATCGGAGATCGCCTTGG 60.599 60.000 14.01 2.64 45.12 3.61
5658 6222 2.636412 CGTCGAGGGCAGAGACCAA 61.636 63.158 0.00 0.00 29.21 3.67
5679 6243 1.681793 GCATGGCAAAGAGCTCATCAT 59.318 47.619 17.77 8.72 44.79 2.45
5704 6287 0.939419 CCATGCGCTGATCGAAATCA 59.061 50.000 9.73 0.00 41.67 2.57
5705 6288 0.385223 GCCATGCGCTGATCGAAATC 60.385 55.000 9.73 0.00 41.67 2.17
5857 6443 1.079621 ACCAGATCGGGGTGGTGTA 59.920 57.895 16.73 0.00 45.72 2.90
5914 6500 0.606604 GAGTGTCTGGGCGGTTTCTA 59.393 55.000 0.00 0.00 0.00 2.10
5988 6579 2.433604 TCGTAGTCGTCCTCCTCATACT 59.566 50.000 0.00 0.00 38.33 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.