Multiple sequence alignment - TraesCS2D01G024900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G024900 chr2D 100.000 3965 0 0 1 3965 10914163 10918127 0.000000e+00 7323.0
1 TraesCS2D01G024900 chr2D 74.128 889 182 41 1116 1979 22938015 22938880 1.370000e-84 324.0
2 TraesCS2D01G024900 chr2D 76.897 593 99 26 1147 1725 11187808 11188376 6.440000e-78 302.0
3 TraesCS2D01G024900 chr2D 78.733 442 90 3 2531 2969 11040113 11040553 3.880000e-75 292.0
4 TraesCS2D01G024900 chr2B 85.962 2885 295 41 257 3122 16768166 16770959 0.000000e+00 2983.0
5 TraesCS2D01G024900 chr2B 81.805 1396 206 29 969 2333 16198217 16199595 0.000000e+00 1127.0
6 TraesCS2D01G024900 chr2B 92.763 608 34 3 3 609 16756326 16756924 0.000000e+00 870.0
7 TraesCS2D01G024900 chr2B 92.599 608 34 6 3 609 16765068 16765665 0.000000e+00 863.0
8 TraesCS2D01G024900 chr2B 92.715 604 31 7 9 609 16729931 16730524 0.000000e+00 859.0
9 TraesCS2D01G024900 chr2B 92.105 608 38 3 3 609 16745750 16746348 0.000000e+00 848.0
10 TraesCS2D01G024900 chr2B 91.118 608 40 4 3 609 16748408 16749002 0.000000e+00 811.0
11 TraesCS2D01G024900 chr2B 90.954 608 37 4 3 609 16752351 16752941 0.000000e+00 802.0
12 TraesCS2D01G024900 chr2B 90.744 605 36 6 6 609 16736523 16737108 0.000000e+00 789.0
13 TraesCS2D01G024900 chr2B 90.625 608 33 6 3 609 16759820 16760404 0.000000e+00 785.0
14 TraesCS2D01G024900 chr2B 90.132 608 33 7 3 609 16763753 16764334 0.000000e+00 765.0
15 TraesCS2D01G024900 chr2B 89.967 608 34 5 3 609 16747088 16747669 0.000000e+00 760.0
16 TraesCS2D01G024900 chr2B 89.735 604 33 5 3 605 16735201 16735776 0.000000e+00 745.0
17 TraesCS2D01G024900 chr2B 76.514 545 103 15 2528 3069 16857168 16857690 1.400000e-69 274.0
18 TraesCS2D01G024900 chr2B 83.462 260 33 7 1533 1787 16826876 16827130 2.380000e-57 233.0
19 TraesCS2D01G024900 chr2B 77.124 153 33 2 1860 2011 16990294 16990445 1.960000e-13 87.9
20 TraesCS2D01G024900 chr2A 89.925 2134 159 16 1 2107 11619324 11621428 0.000000e+00 2699.0
21 TraesCS2D01G024900 chr2A 92.730 1238 65 13 2100 3313 11621467 11622703 0.000000e+00 1764.0
22 TraesCS2D01G024900 chr2A 94.072 388 13 6 3314 3693 71210451 71210066 7.390000e-162 580.0
23 TraesCS2D01G024900 chr2A 84.483 290 28 10 3693 3965 11622693 11622982 1.820000e-68 270.0
24 TraesCS2D01G024900 chr1A 95.844 385 9 4 3314 3693 548306811 548307193 2.020000e-172 616.0
25 TraesCS2D01G024900 chr4A 95.065 385 11 5 3314 3693 642673514 642673133 2.040000e-167 599.0
26 TraesCS2D01G024900 chr4D 94.764 382 11 7 3314 3690 476044986 476045363 1.590000e-163 586.0
27 TraesCS2D01G024900 chr5D 94.301 386 14 5 3314 3693 223510278 223509895 5.710000e-163 584.0
28 TraesCS2D01G024900 chr5D 92.063 63 5 0 2879 2941 24798750 24798688 5.460000e-14 89.8
29 TraesCS2D01G024900 chr3D 94.301 386 12 6 3314 3694 485204801 485205181 2.050000e-162 582.0
30 TraesCS2D01G024900 chrUn 94.041 386 16 4 3314 3694 76192502 76192885 2.660000e-161 579.0
31 TraesCS2D01G024900 chrUn 80.000 440 84 3 2533 2969 12182853 12183291 4.940000e-84 322.0
32 TraesCS2D01G024900 chrUn 76.797 612 106 21 2532 3138 12635674 12635094 1.070000e-80 311.0
33 TraesCS2D01G024900 chrUn 78.810 420 85 3 2552 2969 12188197 12188614 3.020000e-71 279.0
34 TraesCS2D01G024900 chr6D 94.026 385 15 5 3314 3693 7743274 7743655 9.550000e-161 577.0
35 TraesCS2D01G024900 chr4B 93.540 387 17 5 3314 3694 117779893 117780277 1.600000e-158 569.0
36 TraesCS2D01G024900 chr7A 73.282 917 188 39 1147 2037 709293655 709294540 2.330000e-72 283.0
37 TraesCS2D01G024900 chr7B 71.311 1220 260 58 1141 2317 709521983 709523155 8.570000e-57 231.0
38 TraesCS2D01G024900 chr7B 78.287 327 50 10 995 1304 709555523 709555845 1.450000e-44 191.0
39 TraesCS2D01G024900 chr7B 100.000 30 0 0 1177 1206 660247377 660247348 5.540000e-04 56.5
40 TraesCS2D01G024900 chr7D 71.467 1104 225 52 996 2036 616308545 616309621 1.120000e-50 211.0
41 TraesCS2D01G024900 chr5A 88.095 84 10 0 2870 2953 17581427 17581510 2.520000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G024900 chr2D 10914163 10918127 3964 False 7323.000000 7323 100.000000 1 3965 1 chr2D.!!$F1 3964
1 TraesCS2D01G024900 chr2D 22938015 22938880 865 False 324.000000 324 74.128000 1116 1979 1 chr2D.!!$F4 863
2 TraesCS2D01G024900 chr2D 11187808 11188376 568 False 302.000000 302 76.897000 1147 1725 1 chr2D.!!$F3 578
3 TraesCS2D01G024900 chr2B 16198217 16199595 1378 False 1127.000000 1127 81.805000 969 2333 1 chr2B.!!$F1 1364
4 TraesCS2D01G024900 chr2B 16745750 16770959 25209 False 1054.111111 2983 90.691667 3 3122 9 chr2B.!!$F7 3119
5 TraesCS2D01G024900 chr2B 16729931 16730524 593 False 859.000000 859 92.715000 9 609 1 chr2B.!!$F2 600
6 TraesCS2D01G024900 chr2B 16735201 16737108 1907 False 767.000000 789 90.239500 3 609 2 chr2B.!!$F6 606
7 TraesCS2D01G024900 chr2B 16857168 16857690 522 False 274.000000 274 76.514000 2528 3069 1 chr2B.!!$F4 541
8 TraesCS2D01G024900 chr2A 11619324 11622982 3658 False 1577.666667 2699 89.046000 1 3965 3 chr2A.!!$F1 3964
9 TraesCS2D01G024900 chrUn 12635094 12635674 580 True 311.000000 311 76.797000 2532 3138 1 chrUn.!!$R1 606
10 TraesCS2D01G024900 chr7A 709293655 709294540 885 False 283.000000 283 73.282000 1147 2037 1 chr7A.!!$F1 890
11 TraesCS2D01G024900 chr7B 709521983 709523155 1172 False 231.000000 231 71.311000 1141 2317 1 chr7B.!!$F1 1176
12 TraesCS2D01G024900 chr7D 616308545 616309621 1076 False 211.000000 211 71.467000 996 2036 1 chr7D.!!$F1 1040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 6681 0.593128 CCAACTTGCCTTGGTTCGAG 59.407 55.0 0.00 0.0 36.65 4.04 F
88 6688 0.603975 GCCTTGGTTCGAGAACTGCT 60.604 55.0 14.62 0.0 40.94 4.24 F
1982 24208 0.331278 TGGTGGCAGGAAATACTGGG 59.669 55.0 0.00 0.0 38.90 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 23203 0.325203 ACCCACCACTGCCAACTTTT 60.325 50.0 0.00 0.00 0.0 2.27 R
1992 24218 0.467384 ATGGGAGGCATCTGAGAACG 59.533 55.0 0.00 0.00 0.0 3.95 R
3556 25920 0.030504 TCCGCACGAACGTGTAAGAA 59.969 50.0 24.28 7.35 46.9 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 6681 0.593128 CCAACTTGCCTTGGTTCGAG 59.407 55.000 0.00 0.00 36.65 4.04
86 6686 1.532868 CTTGCCTTGGTTCGAGAACTG 59.467 52.381 14.62 6.57 40.94 3.16
87 6687 0.884704 TGCCTTGGTTCGAGAACTGC 60.885 55.000 14.62 12.35 40.94 4.40
88 6688 0.603975 GCCTTGGTTCGAGAACTGCT 60.604 55.000 14.62 0.00 40.94 4.24
89 6689 1.337823 GCCTTGGTTCGAGAACTGCTA 60.338 52.381 14.62 0.00 40.94 3.49
98 6698 5.469421 GGTTCGAGAACTGCTAGCTATACTA 59.531 44.000 17.23 0.00 40.94 1.82
298 8228 4.951715 TGGTGTACATCGTGTAGTAGGAAT 59.048 41.667 0.00 0.00 32.84 3.01
302 8232 4.548991 ACATCGTGTAGTAGGAATCGTC 57.451 45.455 0.00 0.00 0.00 4.20
475 18472 4.207955 AGCTAGAGATGTCGGTATCACAA 58.792 43.478 0.00 0.00 0.00 3.33
489 19808 2.780065 TCACAAGCATCAACAAGTGC 57.220 45.000 0.00 0.00 41.57 4.40
491 19810 1.067364 CACAAGCATCAACAAGTGCCA 59.933 47.619 0.00 0.00 42.20 4.92
579 19898 7.058005 GTGCAAATCAAAAACGCGTTAATTAA 58.942 30.769 26.87 10.33 0.00 1.40
917 23064 8.755696 AATGATTAAGCATATTCTCTCGTCTC 57.244 34.615 6.64 0.00 0.00 3.36
1056 23203 6.633500 ACAAACGATTTTTCAGAGGATCAA 57.367 33.333 0.00 0.00 37.82 2.57
1083 23230 0.618458 GCAGTGGTGGGTATGGAGAA 59.382 55.000 0.00 0.00 0.00 2.87
1097 23244 7.624478 TGGGTATGGAGAAGTTTACAAGGTATA 59.376 37.037 0.00 0.00 0.00 1.47
1145 23324 1.134965 ACTGGCTACAAGCTCGATCAC 60.135 52.381 0.00 0.00 41.99 3.06
1172 23351 3.634910 ACAAGTGATTTTAACAGGCGGTT 59.365 39.130 8.34 8.34 43.62 4.44
1182 23361 3.655615 AACAGGCGGTTTATAATGGGA 57.344 42.857 0.00 0.00 35.82 4.37
1260 23439 4.703897 TCACAGTGAACTCCTTAACCTTG 58.296 43.478 0.00 0.00 0.00 3.61
1263 23442 1.804748 GTGAACTCCTTAACCTTGCCG 59.195 52.381 0.00 0.00 0.00 5.69
1305 23484 9.726438 ATATTATAAGATTGGTTGGCTACTGTC 57.274 33.333 0.00 0.00 0.00 3.51
1314 23493 1.170442 TGGCTACTGTCACGAATCGA 58.830 50.000 10.55 0.00 0.00 3.59
1317 23496 2.159421 GGCTACTGTCACGAATCGAAGA 60.159 50.000 10.55 3.91 45.75 2.87
1349 23528 5.186256 TCAAGCACAATGGGGAAACTATA 57.814 39.130 0.00 0.00 0.00 1.31
1371 23550 1.134098 GGGCGAAATCAATGGAGAGGA 60.134 52.381 0.00 0.00 0.00 3.71
1514 23714 2.224450 CCCGGGAATACGCCTATTTTCT 60.224 50.000 18.48 0.00 0.00 2.52
1515 23715 3.007182 CCCGGGAATACGCCTATTTTCTA 59.993 47.826 18.48 0.00 0.00 2.10
1516 23716 4.323257 CCCGGGAATACGCCTATTTTCTAT 60.323 45.833 18.48 0.00 0.00 1.98
1517 23717 4.868734 CCGGGAATACGCCTATTTTCTATC 59.131 45.833 0.00 0.00 0.00 2.08
1518 23718 4.868734 CGGGAATACGCCTATTTTCTATCC 59.131 45.833 0.00 0.00 0.00 2.59
1521 23721 7.578189 CGGGAATACGCCTATTTTCTATCCTTA 60.578 40.741 0.00 0.00 0.00 2.69
1586 23786 2.224992 TGACTGGCCCACATGTTACAAT 60.225 45.455 0.00 0.00 0.00 2.71
1653 23853 4.668636 TCCGGACAAACCTATTTTCCATT 58.331 39.130 0.00 0.00 36.31 3.16
1669 23869 2.040545 TCCATTTGGACTTAAAGCCGGA 59.959 45.455 5.05 0.00 39.78 5.14
1733 23933 2.424246 TCTTGGTTTGTCACGGGTTTTC 59.576 45.455 0.00 0.00 0.00 2.29
1787 23987 5.353123 TGTCAAAGGAACACAGTAAGTTGAC 59.647 40.000 0.00 0.00 42.38 3.18
1788 23988 4.879545 TCAAAGGAACACAGTAAGTTGACC 59.120 41.667 0.00 0.00 0.00 4.02
1796 23996 3.187227 CACAGTAAGTTGACCTGTCATGC 59.813 47.826 0.03 0.00 39.64 4.06
1799 23999 2.936919 AAGTTGACCTGTCATGCTCA 57.063 45.000 0.03 0.00 39.64 4.26
1814 24014 5.060940 GTCATGCTCAAAGCCGTTTATTTTC 59.939 40.000 0.00 0.00 41.51 2.29
1845 24060 5.639082 GCATTTTAGCACAGTTTTGCCTTAT 59.361 36.000 0.00 0.00 44.14 1.73
1858 24084 8.465999 CAGTTTTGCCTTATACCAATATGTGAA 58.534 33.333 0.00 0.00 0.00 3.18
1861 24087 4.754618 TGCCTTATACCAATATGTGAAGCG 59.245 41.667 0.00 0.00 0.00 4.68
1866 24092 7.602644 CCTTATACCAATATGTGAAGCGTATGT 59.397 37.037 0.00 0.00 30.20 2.29
1867 24093 8.528917 TTATACCAATATGTGAAGCGTATGTC 57.471 34.615 0.00 0.00 30.20 3.06
1902 24128 6.171213 GGGTATATGCCACCAGAATACTTAC 58.829 44.000 12.29 0.00 37.84 2.34
1904 24130 7.221450 GGTATATGCCACCAGAATACTTACAA 58.779 38.462 4.76 0.00 36.01 2.41
1913 24139 5.128171 ACCAGAATACTTACAACATCGCCTA 59.872 40.000 0.00 0.00 0.00 3.93
1982 24208 0.331278 TGGTGGCAGGAAATACTGGG 59.669 55.000 0.00 0.00 38.90 4.45
1984 24210 1.682087 GGTGGCAGGAAATACTGGGTC 60.682 57.143 0.00 0.00 38.90 4.46
1998 24233 1.214853 GGGTCTTCCCGTCGTTCTC 59.785 63.158 0.00 0.00 44.74 2.87
2000 24235 0.109226 GGTCTTCCCGTCGTTCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
2011 24246 0.467384 CGTTCTCAGATGCCTCCCAT 59.533 55.000 0.00 0.00 36.70 4.00
2032 24267 8.058847 TCCCATGGAGTTTATTAAGCTTGTAAT 58.941 33.333 15.22 4.36 0.00 1.89
2054 24289 9.855361 GTAATGAAATCATCTGTATCTTTGTCG 57.145 33.333 0.00 0.00 35.10 4.35
2149 24479 1.898094 TGCGTGCAGGCAAGTGAAT 60.898 52.632 30.23 0.00 40.59 2.57
2197 24527 1.154073 GCCTCGTACTCGTCACACC 60.154 63.158 0.00 0.00 38.33 4.16
2211 24541 3.306088 CGTCACACCAAGTAGACATCCTT 60.306 47.826 0.00 0.00 32.25 3.36
2232 24562 2.228103 TCGAGTCACTAAGTGCGTTGAT 59.772 45.455 0.00 0.00 32.98 2.57
2235 24565 4.438145 CGAGTCACTAAGTGCGTTGATATC 59.562 45.833 0.00 0.00 32.98 1.63
2304 24634 5.447778 AGGACATTCTCCATGAACTTGAT 57.552 39.130 0.00 0.00 42.46 2.57
2374 24704 4.082136 CAGAAGACCTAACTGTCCAGGTAC 60.082 50.000 12.53 8.49 45.32 3.34
2378 24708 1.403780 CCTAACTGTCCAGGTACGCAC 60.404 57.143 0.00 0.00 0.00 5.34
2379 24709 1.271379 CTAACTGTCCAGGTACGCACA 59.729 52.381 0.00 0.00 0.00 4.57
2391 24721 0.030235 TACGCACAAGGGATCGATCG 59.970 55.000 18.81 9.36 0.00 3.69
2411 24741 3.313524 GCAAAGGCAGGGGTTGGG 61.314 66.667 0.00 0.00 40.72 4.12
2412 24742 2.201210 CAAAGGCAGGGGTTGGGT 59.799 61.111 0.00 0.00 0.00 4.51
2413 24743 2.201210 AAAGGCAGGGGTTGGGTG 59.799 61.111 0.00 0.00 0.00 4.61
2466 24805 3.754965 CCAATGTTTTCCAGTCCTCTGA 58.245 45.455 0.00 0.00 43.76 3.27
2477 24816 3.626670 CCAGTCCTCTGATTCAGCATTTC 59.373 47.826 8.89 0.00 43.76 2.17
2482 24821 3.280295 CTCTGATTCAGCATTTCTGGCT 58.720 45.455 8.89 0.00 43.06 4.75
2571 24925 2.049156 CAGAGAAGCCGCGACACA 60.049 61.111 8.23 0.00 0.00 3.72
2574 24928 0.320771 AGAGAAGCCGCGACACAAAT 60.321 50.000 8.23 0.00 0.00 2.32
2957 25311 2.286833 CCATCGTTTATGTTACAGCGGG 59.713 50.000 0.00 0.00 33.34 6.13
3022 25386 1.068816 GTGGTAAATGGACGTGTTGGC 60.069 52.381 0.00 0.00 0.00 4.52
3028 25392 1.365699 ATGGACGTGTTGGCGATTAC 58.634 50.000 0.00 0.00 35.59 1.89
3147 25511 8.507249 AGCAGCTACTAAAAACACTAATTTCTG 58.493 33.333 0.00 0.00 0.00 3.02
3204 25568 1.561542 AGAAATCATCGCAAGGGTCCT 59.438 47.619 0.00 0.00 38.47 3.85
3291 25655 9.725019 AACATTGAAGATTACAGTATCTTGACA 57.275 29.630 3.77 0.00 43.18 3.58
3303 25667 7.390027 ACAGTATCTTGACATGCTAAAAGAGT 58.610 34.615 0.00 0.00 32.50 3.24
3304 25668 7.332926 ACAGTATCTTGACATGCTAAAAGAGTG 59.667 37.037 0.00 0.40 32.50 3.51
3305 25669 5.557891 ATCTTGACATGCTAAAAGAGTGC 57.442 39.130 0.00 0.00 32.50 4.40
3306 25670 4.388485 TCTTGACATGCTAAAAGAGTGCA 58.612 39.130 0.00 0.00 41.13 4.57
3307 25671 4.821260 TCTTGACATGCTAAAAGAGTGCAA 59.179 37.500 0.00 0.00 40.24 4.08
3308 25672 5.474532 TCTTGACATGCTAAAAGAGTGCAAT 59.525 36.000 0.00 0.00 40.24 3.56
3309 25673 5.300969 TGACATGCTAAAAGAGTGCAATC 57.699 39.130 5.91 5.91 40.24 2.67
3310 25674 4.761227 TGACATGCTAAAAGAGTGCAATCA 59.239 37.500 17.53 0.00 40.24 2.57
3311 25675 5.416639 TGACATGCTAAAAGAGTGCAATCAT 59.583 36.000 17.53 0.35 40.24 2.45
3312 25676 5.888105 ACATGCTAAAAGAGTGCAATCATC 58.112 37.500 17.53 0.00 40.24 2.92
3313 25677 4.604843 TGCTAAAAGAGTGCAATCATCG 57.395 40.909 17.53 1.08 33.48 3.84
3314 25678 3.181507 TGCTAAAAGAGTGCAATCATCGC 60.182 43.478 17.53 11.20 33.48 4.58
3315 25679 2.927553 AAAAGAGTGCAATCATCGCC 57.072 45.000 17.53 0.00 0.00 5.54
3316 25680 0.729116 AAAGAGTGCAATCATCGCCG 59.271 50.000 17.53 0.00 0.00 6.46
3317 25681 0.108186 AAGAGTGCAATCATCGCCGA 60.108 50.000 17.53 0.00 0.00 5.54
3318 25682 0.529337 AGAGTGCAATCATCGCCGAG 60.529 55.000 17.53 0.00 0.00 4.63
3319 25683 2.098842 GAGTGCAATCATCGCCGAGC 62.099 60.000 9.72 0.00 0.00 5.03
3320 25684 2.176273 GTGCAATCATCGCCGAGCT 61.176 57.895 0.00 0.00 0.00 4.09
3321 25685 1.884464 TGCAATCATCGCCGAGCTC 60.884 57.895 2.73 2.73 0.00 4.09
3322 25686 2.602322 GCAATCATCGCCGAGCTCC 61.602 63.158 8.47 0.00 0.00 4.70
3323 25687 1.227350 CAATCATCGCCGAGCTCCA 60.227 57.895 8.47 0.00 0.00 3.86
3324 25688 1.227380 AATCATCGCCGAGCTCCAC 60.227 57.895 8.47 0.00 0.00 4.02
3325 25689 2.960957 AATCATCGCCGAGCTCCACG 62.961 60.000 15.04 15.04 0.00 4.94
3345 25709 4.398549 CGGAGCTCGTTTTCAAAATACA 57.601 40.909 7.83 0.00 0.00 2.29
3346 25710 4.778904 CGGAGCTCGTTTTCAAAATACAA 58.221 39.130 7.83 0.00 0.00 2.41
3347 25711 5.209240 CGGAGCTCGTTTTCAAAATACAAA 58.791 37.500 7.83 0.00 0.00 2.83
3348 25712 5.856455 CGGAGCTCGTTTTCAAAATACAAAT 59.144 36.000 7.83 0.00 0.00 2.32
3349 25713 6.362283 CGGAGCTCGTTTTCAAAATACAAATT 59.638 34.615 7.83 0.00 0.00 1.82
3350 25714 7.096230 CGGAGCTCGTTTTCAAAATACAAATTT 60.096 33.333 7.83 0.00 36.87 1.82
3351 25715 8.214472 GGAGCTCGTTTTCAAAATACAAATTTC 58.786 33.333 7.83 0.00 34.12 2.17
3352 25716 8.072238 AGCTCGTTTTCAAAATACAAATTTCC 57.928 30.769 0.00 0.00 34.12 3.13
3353 25717 7.708752 AGCTCGTTTTCAAAATACAAATTTCCA 59.291 29.630 0.00 0.00 34.12 3.53
3354 25718 7.792048 GCTCGTTTTCAAAATACAAATTTCCAC 59.208 33.333 0.00 0.00 34.12 4.02
3355 25719 8.934507 TCGTTTTCAAAATACAAATTTCCACT 57.065 26.923 0.00 0.00 34.12 4.00
3360 25724 9.757227 TTTCAAAATACAAATTTCCACTAGGTG 57.243 29.630 0.00 0.00 34.12 4.00
3361 25725 8.698973 TCAAAATACAAATTTCCACTAGGTGA 57.301 30.769 0.00 0.00 34.12 4.02
3362 25726 9.308000 TCAAAATACAAATTTCCACTAGGTGAT 57.692 29.630 0.00 0.00 34.12 3.06
3363 25727 9.927668 CAAAATACAAATTTCCACTAGGTGATT 57.072 29.630 0.00 0.00 34.12 2.57
3396 25760 9.509855 TGAAATTGTTTGTATACACTTTCACAC 57.490 29.630 4.68 0.00 45.08 3.82
3397 25761 9.509855 GAAATTGTTTGTATACACTTTCACACA 57.490 29.630 4.68 0.00 42.51 3.72
3399 25763 9.462174 AATTGTTTGTATACACTTTCACACATG 57.538 29.630 4.68 0.00 0.00 3.21
3400 25764 7.561021 TGTTTGTATACACTTTCACACATGT 57.439 32.000 4.68 0.00 0.00 3.21
3401 25765 7.413644 TGTTTGTATACACTTTCACACATGTG 58.586 34.615 24.25 24.25 46.91 3.21
3402 25766 7.066404 TGTTTGTATACACTTTCACACATGTGT 59.934 33.333 25.76 25.76 45.76 3.72
3403 25767 8.552865 GTTTGTATACACTTTCACACATGTGTA 58.447 33.333 30.11 14.23 45.77 2.90
3407 25771 4.858935 ACACTTTCACACATGTGTATTGC 58.141 39.130 30.11 0.00 45.76 3.56
3408 25772 3.907788 CACTTTCACACATGTGTATTGCG 59.092 43.478 30.11 17.77 45.76 4.85
3409 25773 3.563808 ACTTTCACACATGTGTATTGCGT 59.436 39.130 30.11 19.39 45.76 5.24
3410 25774 3.804518 TTCACACATGTGTATTGCGTC 57.195 42.857 30.11 0.00 45.76 5.19
3411 25775 3.038788 TCACACATGTGTATTGCGTCT 57.961 42.857 30.11 2.37 45.76 4.18
3412 25776 2.736192 TCACACATGTGTATTGCGTCTG 59.264 45.455 30.11 15.01 45.76 3.51
3413 25777 2.480037 CACACATGTGTATTGCGTCTGT 59.520 45.455 30.11 1.02 42.83 3.41
3414 25778 2.480037 ACACATGTGTATTGCGTCTGTG 59.520 45.455 29.66 0.23 42.90 3.66
3415 25779 1.464608 ACATGTGTATTGCGTCTGTGC 59.535 47.619 0.00 0.00 0.00 4.57
3416 25780 1.464219 CATGTGTATTGCGTCTGTGCA 59.536 47.619 0.00 0.00 44.61 4.57
3424 25788 2.859526 TGCGTCTGTGCAAAAATTCA 57.140 40.000 0.00 0.00 43.02 2.57
3425 25789 3.156511 TGCGTCTGTGCAAAAATTCAA 57.843 38.095 0.00 0.00 43.02 2.69
3426 25790 3.515630 TGCGTCTGTGCAAAAATTCAAA 58.484 36.364 0.00 0.00 43.02 2.69
3427 25791 3.928992 TGCGTCTGTGCAAAAATTCAAAA 59.071 34.783 0.00 0.00 43.02 2.44
3428 25792 4.201666 TGCGTCTGTGCAAAAATTCAAAAC 60.202 37.500 0.00 0.00 43.02 2.43
3429 25793 4.781883 GCGTCTGTGCAAAAATTCAAAACC 60.782 41.667 0.00 0.00 34.15 3.27
3430 25794 4.328440 CGTCTGTGCAAAAATTCAAAACCA 59.672 37.500 0.00 0.00 0.00 3.67
3431 25795 5.163913 CGTCTGTGCAAAAATTCAAAACCAA 60.164 36.000 0.00 0.00 0.00 3.67
3432 25796 6.606768 GTCTGTGCAAAAATTCAAAACCAAA 58.393 32.000 0.00 0.00 0.00 3.28
3433 25797 7.249858 GTCTGTGCAAAAATTCAAAACCAAAT 58.750 30.769 0.00 0.00 0.00 2.32
3434 25798 8.394121 GTCTGTGCAAAAATTCAAAACCAAATA 58.606 29.630 0.00 0.00 0.00 1.40
3435 25799 8.394121 TCTGTGCAAAAATTCAAAACCAAATAC 58.606 29.630 0.00 0.00 0.00 1.89
3436 25800 8.273780 TGTGCAAAAATTCAAAACCAAATACT 57.726 26.923 0.00 0.00 0.00 2.12
3437 25801 8.734386 TGTGCAAAAATTCAAAACCAAATACTT 58.266 25.926 0.00 0.00 0.00 2.24
3438 25802 9.566530 GTGCAAAAATTCAAAACCAAATACTTT 57.433 25.926 0.00 0.00 0.00 2.66
3439 25803 9.780413 TGCAAAAATTCAAAACCAAATACTTTC 57.220 25.926 0.00 0.00 0.00 2.62
3440 25804 9.780413 GCAAAAATTCAAAACCAAATACTTTCA 57.220 25.926 0.00 0.00 0.00 2.69
3444 25808 7.692908 ATTCAAAACCAAATACTTTCACACG 57.307 32.000 0.00 0.00 0.00 4.49
3445 25809 6.197364 TCAAAACCAAATACTTTCACACGT 57.803 33.333 0.00 0.00 0.00 4.49
3446 25810 6.030849 TCAAAACCAAATACTTTCACACGTG 58.969 36.000 15.48 15.48 0.00 4.49
3447 25811 4.561735 AACCAAATACTTTCACACGTGG 57.438 40.909 21.57 9.11 0.00 4.94
3448 25812 2.292292 ACCAAATACTTTCACACGTGGC 59.708 45.455 21.57 0.00 0.00 5.01
3449 25813 2.570169 CAAATACTTTCACACGTGGCG 58.430 47.619 21.57 10.79 0.00 5.69
3450 25814 1.873698 AATACTTTCACACGTGGCGT 58.126 45.000 21.57 11.01 42.36 5.68
3451 25815 2.728690 ATACTTTCACACGTGGCGTA 57.271 45.000 21.57 12.75 38.32 4.42
3452 25816 1.769733 TACTTTCACACGTGGCGTAC 58.230 50.000 21.57 0.00 38.32 3.67
3453 25817 0.179105 ACTTTCACACGTGGCGTACA 60.179 50.000 21.57 0.00 38.32 2.90
3454 25818 0.506932 CTTTCACACGTGGCGTACAG 59.493 55.000 21.57 4.00 38.32 2.74
3455 25819 0.102663 TTTCACACGTGGCGTACAGA 59.897 50.000 21.57 3.06 38.32 3.41
3456 25820 0.102663 TTCACACGTGGCGTACAGAA 59.897 50.000 21.57 8.85 38.32 3.02
3457 25821 0.102663 TCACACGTGGCGTACAGAAA 59.897 50.000 21.57 0.00 38.32 2.52
3458 25822 0.931702 CACACGTGGCGTACAGAAAA 59.068 50.000 21.57 0.00 38.32 2.29
3459 25823 1.328069 CACACGTGGCGTACAGAAAAA 59.672 47.619 21.57 0.00 38.32 1.94
3485 25849 9.471084 AAGACAAAAACGTATTTCTAAAATGGG 57.529 29.630 0.00 0.00 0.00 4.00
3486 25850 7.597369 AGACAAAAACGTATTTCTAAAATGGGC 59.403 33.333 0.00 0.00 0.00 5.36
3487 25851 6.647481 ACAAAAACGTATTTCTAAAATGGGCC 59.353 34.615 0.00 0.00 0.00 5.80
3488 25852 5.986501 AAACGTATTTCTAAAATGGGCCA 57.013 34.783 9.61 9.61 0.00 5.36
3489 25853 5.986501 AACGTATTTCTAAAATGGGCCAA 57.013 34.783 11.89 0.00 0.00 4.52
3490 25854 6.538945 AACGTATTTCTAAAATGGGCCAAT 57.461 33.333 11.89 0.00 0.00 3.16
3491 25855 7.648039 AACGTATTTCTAAAATGGGCCAATA 57.352 32.000 11.89 3.40 0.00 1.90
3492 25856 7.833285 ACGTATTTCTAAAATGGGCCAATAT 57.167 32.000 11.89 1.28 0.00 1.28
3493 25857 8.245195 ACGTATTTCTAAAATGGGCCAATATT 57.755 30.769 11.89 8.74 0.00 1.28
3494 25858 8.700973 ACGTATTTCTAAAATGGGCCAATATTT 58.299 29.630 11.89 14.86 0.00 1.40
3495 25859 9.541143 CGTATTTCTAAAATGGGCCAATATTTT 57.459 29.630 11.89 15.70 39.21 1.82
3513 25877 3.922171 TTTTTGTTGTTGGGCTGGATT 57.078 38.095 0.00 0.00 0.00 3.01
3514 25878 3.922171 TTTTGTTGTTGGGCTGGATTT 57.078 38.095 0.00 0.00 0.00 2.17
3515 25879 3.922171 TTTGTTGTTGGGCTGGATTTT 57.078 38.095 0.00 0.00 0.00 1.82
3516 25880 3.922171 TTGTTGTTGGGCTGGATTTTT 57.078 38.095 0.00 0.00 0.00 1.94
3517 25881 3.191078 TGTTGTTGGGCTGGATTTTTG 57.809 42.857 0.00 0.00 0.00 2.44
3518 25882 2.503356 TGTTGTTGGGCTGGATTTTTGT 59.497 40.909 0.00 0.00 0.00 2.83
3519 25883 3.054802 TGTTGTTGGGCTGGATTTTTGTT 60.055 39.130 0.00 0.00 0.00 2.83
3520 25884 3.922171 TGTTGGGCTGGATTTTTGTTT 57.078 38.095 0.00 0.00 0.00 2.83
3521 25885 4.227864 TGTTGGGCTGGATTTTTGTTTT 57.772 36.364 0.00 0.00 0.00 2.43
3522 25886 4.593956 TGTTGGGCTGGATTTTTGTTTTT 58.406 34.783 0.00 0.00 0.00 1.94
3542 25906 4.413495 TTTTGTACAGCCTACAAATCGC 57.587 40.909 14.83 0.00 44.00 4.58
3543 25907 2.753055 TGTACAGCCTACAAATCGCA 57.247 45.000 0.00 0.00 0.00 5.10
3544 25908 3.046968 TGTACAGCCTACAAATCGCAA 57.953 42.857 0.00 0.00 0.00 4.85
3545 25909 2.739913 TGTACAGCCTACAAATCGCAAC 59.260 45.455 0.00 0.00 0.00 4.17
3546 25910 1.890876 ACAGCCTACAAATCGCAACA 58.109 45.000 0.00 0.00 0.00 3.33
3547 25911 2.226330 ACAGCCTACAAATCGCAACAA 58.774 42.857 0.00 0.00 0.00 2.83
3548 25912 2.621055 ACAGCCTACAAATCGCAACAAA 59.379 40.909 0.00 0.00 0.00 2.83
3549 25913 3.255642 ACAGCCTACAAATCGCAACAAAT 59.744 39.130 0.00 0.00 0.00 2.32
3550 25914 4.236935 CAGCCTACAAATCGCAACAAATT 58.763 39.130 0.00 0.00 0.00 1.82
3551 25915 4.324402 CAGCCTACAAATCGCAACAAATTC 59.676 41.667 0.00 0.00 0.00 2.17
3552 25916 4.022416 AGCCTACAAATCGCAACAAATTCA 60.022 37.500 0.00 0.00 0.00 2.57
3553 25917 4.683781 GCCTACAAATCGCAACAAATTCAA 59.316 37.500 0.00 0.00 0.00 2.69
3554 25918 5.348451 GCCTACAAATCGCAACAAATTCAAT 59.652 36.000 0.00 0.00 0.00 2.57
3555 25919 6.128580 GCCTACAAATCGCAACAAATTCAATT 60.129 34.615 0.00 0.00 0.00 2.32
3556 25920 7.571059 GCCTACAAATCGCAACAAATTCAATTT 60.571 33.333 0.00 0.00 0.00 1.82
3557 25921 8.281893 CCTACAAATCGCAACAAATTCAATTTT 58.718 29.630 0.00 0.00 0.00 1.82
3558 25922 9.305110 CTACAAATCGCAACAAATTCAATTTTC 57.695 29.630 0.00 0.00 0.00 2.29
3559 25923 7.918643 ACAAATCGCAACAAATTCAATTTTCT 58.081 26.923 0.00 0.00 0.00 2.52
3560 25924 8.397148 ACAAATCGCAACAAATTCAATTTTCTT 58.603 25.926 0.00 0.00 0.00 2.52
3561 25925 9.861138 CAAATCGCAACAAATTCAATTTTCTTA 57.139 25.926 0.00 0.00 0.00 2.10
3562 25926 9.862585 AAATCGCAACAAATTCAATTTTCTTAC 57.137 25.926 0.00 0.00 0.00 2.34
3563 25927 7.993821 TCGCAACAAATTCAATTTTCTTACA 57.006 28.000 0.00 0.00 0.00 2.41
3564 25928 7.836512 TCGCAACAAATTCAATTTTCTTACAC 58.163 30.769 0.00 0.00 0.00 2.90
3565 25929 6.780496 CGCAACAAATTCAATTTTCTTACACG 59.220 34.615 0.00 0.00 0.00 4.49
3566 25930 7.514435 CGCAACAAATTCAATTTTCTTACACGT 60.514 33.333 0.00 0.00 0.00 4.49
3567 25931 8.113675 GCAACAAATTCAATTTTCTTACACGTT 58.886 29.630 0.00 0.00 0.00 3.99
3568 25932 9.618410 CAACAAATTCAATTTTCTTACACGTTC 57.382 29.630 0.00 0.00 0.00 3.95
3569 25933 8.045750 ACAAATTCAATTTTCTTACACGTTCG 57.954 30.769 0.00 0.00 0.00 3.95
3570 25934 7.698970 ACAAATTCAATTTTCTTACACGTTCGT 59.301 29.630 0.00 0.00 0.00 3.85
3571 25935 7.603297 AATTCAATTTTCTTACACGTTCGTG 57.397 32.000 21.13 21.13 41.47 4.35
3572 25936 4.520078 TCAATTTTCTTACACGTTCGTGC 58.480 39.130 22.35 0.00 39.53 5.34
3573 25937 2.631663 TTTTCTTACACGTTCGTGCG 57.368 45.000 22.35 12.64 39.53 5.34
3574 25938 0.854062 TTTCTTACACGTTCGTGCGG 59.146 50.000 22.35 13.57 39.53 5.69
3575 25939 0.030504 TTCTTACACGTTCGTGCGGA 59.969 50.000 22.35 15.29 39.53 5.54
3576 25940 0.030504 TCTTACACGTTCGTGCGGAA 59.969 50.000 22.35 13.97 39.53 4.30
3577 25941 0.854062 CTTACACGTTCGTGCGGAAA 59.146 50.000 22.35 12.08 39.53 3.13
3578 25942 1.458064 CTTACACGTTCGTGCGGAAAT 59.542 47.619 22.35 7.10 39.53 2.17
3579 25943 1.062258 TACACGTTCGTGCGGAAATC 58.938 50.000 22.35 0.00 39.53 2.17
3580 25944 0.599204 ACACGTTCGTGCGGAAATCT 60.599 50.000 22.35 0.77 39.53 2.40
3581 25945 1.336148 ACACGTTCGTGCGGAAATCTA 60.336 47.619 22.35 0.00 39.53 1.98
3582 25946 1.924524 CACGTTCGTGCGGAAATCTAT 59.075 47.619 12.19 0.00 36.14 1.98
3583 25947 2.347452 CACGTTCGTGCGGAAATCTATT 59.653 45.455 12.19 0.00 36.14 1.73
3584 25948 3.548668 CACGTTCGTGCGGAAATCTATTA 59.451 43.478 12.19 0.00 36.14 0.98
3585 25949 4.031991 CACGTTCGTGCGGAAATCTATTAA 59.968 41.667 12.19 0.00 36.14 1.40
3586 25950 4.032104 ACGTTCGTGCGGAAATCTATTAAC 59.968 41.667 0.00 0.00 36.14 2.01
3587 25951 4.266976 CGTTCGTGCGGAAATCTATTAACT 59.733 41.667 0.00 0.00 36.14 2.24
3588 25952 5.220340 CGTTCGTGCGGAAATCTATTAACTT 60.220 40.000 0.00 0.00 36.14 2.66
3589 25953 6.020440 CGTTCGTGCGGAAATCTATTAACTTA 60.020 38.462 0.00 0.00 36.14 2.24
3590 25954 7.306399 CGTTCGTGCGGAAATCTATTAACTTAT 60.306 37.037 0.00 0.00 36.14 1.73
3591 25955 7.633361 TCGTGCGGAAATCTATTAACTTATC 57.367 36.000 0.00 0.00 0.00 1.75
3592 25956 6.361481 TCGTGCGGAAATCTATTAACTTATCG 59.639 38.462 0.00 0.00 0.00 2.92
3593 25957 6.143438 CGTGCGGAAATCTATTAACTTATCGT 59.857 38.462 0.00 0.00 0.00 3.73
3594 25958 7.281484 GTGCGGAAATCTATTAACTTATCGTG 58.719 38.462 0.00 0.00 0.00 4.35
3595 25959 6.422701 TGCGGAAATCTATTAACTTATCGTGG 59.577 38.462 0.00 0.00 0.00 4.94
3596 25960 6.643770 GCGGAAATCTATTAACTTATCGTGGA 59.356 38.462 0.00 0.00 0.00 4.02
3597 25961 7.170320 GCGGAAATCTATTAACTTATCGTGGAA 59.830 37.037 0.00 0.00 0.00 3.53
3598 25962 9.204570 CGGAAATCTATTAACTTATCGTGGAAT 57.795 33.333 0.00 0.00 0.00 3.01
3663 26027 4.776795 TTTTTCAAAATACCGAGCTCCC 57.223 40.909 8.47 0.00 0.00 4.30
3664 26028 3.713826 TTTCAAAATACCGAGCTCCCT 57.286 42.857 8.47 0.00 0.00 4.20
3665 26029 2.691409 TCAAAATACCGAGCTCCCTG 57.309 50.000 8.47 0.00 0.00 4.45
3666 26030 1.209504 TCAAAATACCGAGCTCCCTGG 59.790 52.381 8.47 6.35 0.00 4.45
3667 26031 1.209504 CAAAATACCGAGCTCCCTGGA 59.790 52.381 12.53 0.00 0.00 3.86
3668 26032 1.123928 AAATACCGAGCTCCCTGGAG 58.876 55.000 12.53 8.91 44.56 3.86
3692 26056 1.506262 CCTCCGTTGGCATTTTCCG 59.494 57.895 0.00 0.00 0.00 4.30
3736 26100 7.696992 AAGTGTTTGTTTCTCAGAAAAGGTA 57.303 32.000 0.00 0.00 0.00 3.08
3742 26106 5.996644 TGTTTCTCAGAAAAGGTACCTCAA 58.003 37.500 16.64 0.00 0.00 3.02
3760 26124 3.689347 TCAAGGTGTAGCATGAGCAAAT 58.311 40.909 0.00 0.00 45.49 2.32
3765 26129 4.337555 AGGTGTAGCATGAGCAAATCATTC 59.662 41.667 0.00 0.00 46.97 2.67
3766 26130 4.096833 GGTGTAGCATGAGCAAATCATTCA 59.903 41.667 0.00 0.00 46.97 2.57
3767 26131 5.393352 GGTGTAGCATGAGCAAATCATTCAA 60.393 40.000 0.00 0.00 46.97 2.69
3768 26132 6.094719 GTGTAGCATGAGCAAATCATTCAAA 58.905 36.000 0.00 0.00 46.97 2.69
3769 26133 6.252869 GTGTAGCATGAGCAAATCATTCAAAG 59.747 38.462 0.00 0.00 46.97 2.77
3770 26134 5.654603 AGCATGAGCAAATCATTCAAAGA 57.345 34.783 0.00 0.00 46.97 2.52
3771 26135 6.032956 AGCATGAGCAAATCATTCAAAGAA 57.967 33.333 0.00 0.00 46.97 2.52
3774 26138 6.146510 GCATGAGCAAATCATTCAAAGAACAA 59.853 34.615 0.00 0.00 46.97 2.83
3775 26139 7.307514 GCATGAGCAAATCATTCAAAGAACAAA 60.308 33.333 0.00 0.00 46.97 2.83
3776 26140 8.552865 CATGAGCAAATCATTCAAAGAACAAAA 58.447 29.630 0.00 0.00 46.97 2.44
3777 26141 8.489990 TGAGCAAATCATTCAAAGAACAAAAA 57.510 26.923 0.00 0.00 31.12 1.94
3814 26193 7.885399 ACTTTTTCTACCATCATCTTGCTACTT 59.115 33.333 0.00 0.00 0.00 2.24
3912 26292 8.620416 GGCACACATTATTGTCTATGAATGTTA 58.380 33.333 0.00 0.00 39.81 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
298 8228 0.327924 TCGGGGTAAGGTACAGACGA 59.672 55.000 0.00 0.00 0.00 4.20
302 8232 1.962100 GATCCTCGGGGTAAGGTACAG 59.038 57.143 0.00 0.00 35.29 2.74
353 8283 7.945033 TGTAGACCAATTCAAATTTTGCTTC 57.055 32.000 4.19 0.00 0.00 3.86
475 18472 0.178981 AGGTGGCACTTGTTGATGCT 60.179 50.000 18.45 0.00 41.74 3.79
489 19808 8.095169 ACTCTCTTGTAGTATAACAAAAGGTGG 58.905 37.037 0.00 0.00 38.81 4.61
491 19810 8.867097 TGACTCTCTTGTAGTATAACAAAAGGT 58.133 33.333 0.00 0.00 38.81 3.50
579 19898 2.396955 CGACGAGGCGTAGTGGAGT 61.397 63.158 0.00 0.00 41.37 3.85
894 23041 7.366513 CAGAGACGAGAGAATATGCTTAATCA 58.633 38.462 0.00 0.00 0.00 2.57
917 23064 8.668353 TGAGAATGAAATTATCTTCGAAACCAG 58.332 33.333 0.00 0.00 44.53 4.00
1056 23203 0.325203 ACCCACCACTGCCAACTTTT 60.325 50.000 0.00 0.00 0.00 2.27
1105 23278 6.428159 GCCAGTGGTACCATTATTAATCTGAG 59.572 42.308 19.72 12.00 0.00 3.35
1145 23324 4.851558 GCCTGTTAAAATCACTTGTTAGCG 59.148 41.667 0.00 0.00 0.00 4.26
1172 23351 7.345691 TCACAGCAATCTCTTTCCCATTATAA 58.654 34.615 0.00 0.00 0.00 0.98
1182 23361 4.396522 AGCTTCTTCACAGCAATCTCTTT 58.603 39.130 0.00 0.00 39.99 2.52
1226 23405 5.931532 AGTTCACTGTGAAATTGCTTATCG 58.068 37.500 23.55 0.00 38.22 2.92
1260 23439 1.305201 TTTTTGTGAGACACCTCGGC 58.695 50.000 0.00 0.00 42.33 5.54
1292 23471 2.000447 GATTCGTGACAGTAGCCAACC 59.000 52.381 0.00 0.00 0.00 3.77
1305 23484 9.573102 CTTGATGTATTTATTCTTCGATTCGTG 57.427 33.333 5.89 1.06 0.00 4.35
1314 23493 8.199449 CCCATTGTGCTTGATGTATTTATTCTT 58.801 33.333 0.00 0.00 0.00 2.52
1317 23496 6.610830 TCCCCATTGTGCTTGATGTATTTATT 59.389 34.615 0.00 0.00 0.00 1.40
1349 23528 2.579873 CTCTCCATTGATTTCGCCCAT 58.420 47.619 0.00 0.00 0.00 4.00
1586 23786 3.963374 CCTCACAAGTCCCTCTGATGATA 59.037 47.826 0.00 0.00 0.00 2.15
1653 23853 4.289238 TGTTATCCGGCTTTAAGTCCAA 57.711 40.909 0.00 0.00 0.00 3.53
1733 23933 4.408993 TTGATGTGTTTCTGATGAAGCG 57.591 40.909 0.00 0.00 36.40 4.68
1787 23987 0.957395 ACGGCTTTGAGCATGACAGG 60.957 55.000 0.00 0.00 44.75 4.00
1788 23988 0.877071 AACGGCTTTGAGCATGACAG 59.123 50.000 0.00 0.00 44.75 3.51
1796 23996 6.820470 TTTGTGAAAATAAACGGCTTTGAG 57.180 33.333 0.00 0.00 0.00 3.02
1799 23999 5.582665 TGCTTTTGTGAAAATAAACGGCTTT 59.417 32.000 0.00 0.00 0.00 3.51
1814 24014 5.971895 AACTGTGCTAAAATGCTTTTGTG 57.028 34.783 0.00 0.00 34.19 3.33
1832 24033 7.995289 TCACATATTGGTATAAGGCAAAACTG 58.005 34.615 0.00 0.00 0.00 3.16
1845 24060 5.908341 TGACATACGCTTCACATATTGGTA 58.092 37.500 0.00 0.00 0.00 3.25
1858 24084 2.207590 CACTGCATGATGACATACGCT 58.792 47.619 0.00 0.00 35.09 5.07
1861 24087 2.923121 ACCCACTGCATGATGACATAC 58.077 47.619 0.00 0.00 35.09 2.39
1866 24092 3.559811 GGCATATACCCACTGCATGATGA 60.560 47.826 0.00 0.00 37.64 2.92
1867 24093 2.751259 GGCATATACCCACTGCATGATG 59.249 50.000 0.00 0.00 37.64 3.07
1902 24128 7.251704 ACTTCTTTGATATTAGGCGATGTTG 57.748 36.000 0.00 0.00 0.00 3.33
1904 24130 6.201044 CGAACTTCTTTGATATTAGGCGATGT 59.799 38.462 0.00 0.00 0.00 3.06
1913 24139 8.322906 TGAACACATCGAACTTCTTTGATATT 57.677 30.769 0.00 0.00 30.29 1.28
1982 24208 0.879765 TCTGAGAACGACGGGAAGAC 59.120 55.000 0.00 0.00 0.00 3.01
1984 24210 1.914634 CATCTGAGAACGACGGGAAG 58.085 55.000 0.00 0.00 0.00 3.46
1992 24218 0.467384 ATGGGAGGCATCTGAGAACG 59.533 55.000 0.00 0.00 0.00 3.95
2032 24267 8.546597 TTTCGACAAAGATACAGATGATTTCA 57.453 30.769 0.00 0.00 0.00 2.69
2119 24414 2.051076 CACGCAACGCAAGCATGT 60.051 55.556 0.00 0.00 45.62 3.21
2180 24510 0.594602 TTGGTGTGACGAGTACGAGG 59.405 55.000 0.00 0.00 42.66 4.63
2184 24514 3.251729 TGTCTACTTGGTGTGACGAGTAC 59.748 47.826 0.00 0.00 36.51 2.73
2197 24527 4.156922 AGTGACTCGAAGGATGTCTACTTG 59.843 45.833 3.76 0.00 0.00 3.16
2211 24541 1.605232 TCAACGCACTTAGTGACTCGA 59.395 47.619 17.40 3.86 35.23 4.04
2232 24562 3.055747 TGTCCACACACCTTAATGCGATA 60.056 43.478 0.00 0.00 0.00 2.92
2235 24565 1.518325 TGTCCACACACCTTAATGCG 58.482 50.000 0.00 0.00 0.00 4.73
2290 24620 6.036953 GCTTCTAGTTCATCAAGTTCATGGAG 59.963 42.308 0.00 0.00 0.00 3.86
2304 24634 7.468141 TTTCTGTATCTCAGCTTCTAGTTCA 57.532 36.000 0.00 0.00 43.32 3.18
2337 24667 5.486526 AGGTCTTCTGAAACATCTGATGTC 58.513 41.667 22.47 12.28 44.07 3.06
2340 24670 7.102346 CAGTTAGGTCTTCTGAAACATCTGAT 58.898 38.462 0.00 0.00 0.00 2.90
2343 24673 6.426646 ACAGTTAGGTCTTCTGAAACATCT 57.573 37.500 0.00 0.00 33.93 2.90
2347 24677 4.957296 TGGACAGTTAGGTCTTCTGAAAC 58.043 43.478 0.00 0.00 37.91 2.78
2374 24704 2.589492 GCGATCGATCCCTTGTGCG 61.589 63.158 21.57 7.14 0.00 5.34
2378 24708 0.811219 TTGCAGCGATCGATCCCTTG 60.811 55.000 21.57 15.08 0.00 3.61
2379 24709 0.107703 TTTGCAGCGATCGATCCCTT 60.108 50.000 21.57 2.62 0.00 3.95
2403 24733 3.569200 GAGGAGTGCACCCAACCCC 62.569 68.421 21.71 11.09 0.00 4.95
2406 24736 0.179018 ACAAGAGGAGTGCACCCAAC 60.179 55.000 21.71 15.85 0.00 3.77
2408 24738 0.685097 GTACAAGAGGAGTGCACCCA 59.315 55.000 21.71 2.43 0.00 4.51
2409 24739 0.977395 AGTACAAGAGGAGTGCACCC 59.023 55.000 14.63 14.56 0.00 4.61
2410 24740 1.344763 ACAGTACAAGAGGAGTGCACC 59.655 52.381 14.63 4.90 0.00 5.01
2411 24741 2.610727 GGACAGTACAAGAGGAGTGCAC 60.611 54.545 9.40 9.40 0.00 4.57
2412 24742 1.618837 GGACAGTACAAGAGGAGTGCA 59.381 52.381 0.00 0.00 0.00 4.57
2413 24743 1.066787 GGGACAGTACAAGAGGAGTGC 60.067 57.143 0.00 0.00 0.00 4.40
2477 24816 3.378112 TCAACAGAAAACTGACAAGCCAG 59.622 43.478 0.00 0.00 39.93 4.85
2482 24821 9.515020 GATACAAATTCAACAGAAAACTGACAA 57.485 29.630 0.00 0.00 0.00 3.18
2571 24925 2.813754 CGGATCCACTGACACAACATTT 59.186 45.455 13.41 0.00 0.00 2.32
2574 24928 1.044611 TCGGATCCACTGACACAACA 58.955 50.000 13.41 0.00 0.00 3.33
2957 25311 0.318784 CCGCGTAGGAGACTATTGGC 60.319 60.000 4.92 0.00 46.56 4.52
3022 25386 8.412608 ACTCAGTAATTGTCTGAATGTAATCG 57.587 34.615 13.44 5.29 40.68 3.34
3028 25392 7.642669 ACAACAACTCAGTAATTGTCTGAATG 58.357 34.615 13.44 15.33 40.68 2.67
3182 25546 2.356069 GGACCCTTGCGATGATTTCTTC 59.644 50.000 0.00 0.00 0.00 2.87
3190 25554 1.755179 ATTGAAGGACCCTTGCGATG 58.245 50.000 5.96 0.00 36.26 3.84
3204 25568 7.093814 ACACATATGCAAGCTTTCCTTATTGAA 60.094 33.333 1.58 0.00 31.00 2.69
3291 25655 4.497006 GCGATGATTGCACTCTTTTAGCAT 60.497 41.667 5.59 0.00 38.19 3.79
3303 25667 1.884464 GAGCTCGGCGATGATTGCA 60.884 57.895 11.27 0.00 0.00 4.08
3304 25668 2.602322 GGAGCTCGGCGATGATTGC 61.602 63.158 11.27 10.35 0.00 3.56
3305 25669 1.227350 TGGAGCTCGGCGATGATTG 60.227 57.895 11.27 0.00 0.00 2.67
3306 25670 1.227380 GTGGAGCTCGGCGATGATT 60.227 57.895 11.27 0.00 0.00 2.57
3307 25671 2.419198 GTGGAGCTCGGCGATGAT 59.581 61.111 11.27 3.01 0.00 2.45
3308 25672 4.193334 CGTGGAGCTCGGCGATGA 62.193 66.667 19.48 0.00 0.00 2.92
3324 25688 4.398549 TGTATTTTGAAAACGAGCTCCG 57.601 40.909 8.47 6.07 45.44 4.63
3325 25689 7.637709 AATTTGTATTTTGAAAACGAGCTCC 57.362 32.000 8.47 0.00 0.00 4.70
3326 25690 8.214472 GGAAATTTGTATTTTGAAAACGAGCTC 58.786 33.333 2.73 2.73 34.16 4.09
3327 25691 7.708752 TGGAAATTTGTATTTTGAAAACGAGCT 59.291 29.630 0.00 0.00 34.16 4.09
3328 25692 7.792048 GTGGAAATTTGTATTTTGAAAACGAGC 59.208 33.333 0.00 0.00 34.16 5.03
3329 25693 9.030301 AGTGGAAATTTGTATTTTGAAAACGAG 57.970 29.630 0.00 0.00 34.16 4.18
3330 25694 8.934507 AGTGGAAATTTGTATTTTGAAAACGA 57.065 26.923 0.00 0.00 34.16 3.85
3334 25698 9.757227 CACCTAGTGGAAATTTGTATTTTGAAA 57.243 29.630 0.00 0.00 34.16 2.69
3335 25699 9.137459 TCACCTAGTGGAAATTTGTATTTTGAA 57.863 29.630 0.00 0.00 37.04 2.69
3336 25700 8.698973 TCACCTAGTGGAAATTTGTATTTTGA 57.301 30.769 0.00 0.00 37.04 2.69
3337 25701 9.927668 AATCACCTAGTGGAAATTTGTATTTTG 57.072 29.630 0.00 0.00 37.04 2.44
3373 25737 9.462174 CATGTGTGAAAGTGTATACAAACAATT 57.538 29.630 7.25 0.00 39.18 2.32
3374 25738 8.629158 ACATGTGTGAAAGTGTATACAAACAAT 58.371 29.630 7.25 0.00 34.79 2.71
3375 25739 7.990917 ACATGTGTGAAAGTGTATACAAACAA 58.009 30.769 7.25 0.94 34.79 2.83
3376 25740 7.561021 ACATGTGTGAAAGTGTATACAAACA 57.439 32.000 7.25 5.02 35.43 2.83
3393 25757 2.480037 CACAGACGCAATACACATGTGT 59.520 45.455 32.47 32.47 46.87 3.72
3394 25758 2.725759 GCACAGACGCAATACACATGTG 60.726 50.000 24.25 24.25 39.55 3.21
3395 25759 1.464608 GCACAGACGCAATACACATGT 59.535 47.619 0.00 0.00 0.00 3.21
3396 25760 1.464219 TGCACAGACGCAATACACATG 59.536 47.619 0.00 0.00 39.45 3.21
3397 25761 1.807139 TGCACAGACGCAATACACAT 58.193 45.000 0.00 0.00 39.45 3.21
3398 25762 1.587547 TTGCACAGACGCAATACACA 58.412 45.000 0.00 0.00 46.61 3.72
3405 25769 2.859526 TGAATTTTTGCACAGACGCA 57.140 40.000 0.00 0.00 41.03 5.24
3406 25770 4.263016 GTTTTGAATTTTTGCACAGACGC 58.737 39.130 0.00 0.00 0.00 5.19
3407 25771 4.328440 TGGTTTTGAATTTTTGCACAGACG 59.672 37.500 0.00 0.00 0.00 4.18
3408 25772 5.793026 TGGTTTTGAATTTTTGCACAGAC 57.207 34.783 0.00 0.00 0.00 3.51
3409 25773 6.808008 TTTGGTTTTGAATTTTTGCACAGA 57.192 29.167 0.00 0.00 0.00 3.41
3410 25774 8.397148 AGTATTTGGTTTTGAATTTTTGCACAG 58.603 29.630 0.00 0.00 0.00 3.66
3411 25775 8.273780 AGTATTTGGTTTTGAATTTTTGCACA 57.726 26.923 0.00 0.00 0.00 4.57
3412 25776 9.566530 AAAGTATTTGGTTTTGAATTTTTGCAC 57.433 25.926 0.00 0.00 36.60 4.57
3413 25777 9.780413 GAAAGTATTTGGTTTTGAATTTTTGCA 57.220 25.926 0.00 0.00 39.27 4.08
3414 25778 9.780413 TGAAAGTATTTGGTTTTGAATTTTTGC 57.220 25.926 0.00 0.00 39.27 3.68
3418 25782 8.599774 CGTGTGAAAGTATTTGGTTTTGAATTT 58.400 29.630 0.00 0.00 39.27 1.82
3419 25783 7.762159 ACGTGTGAAAGTATTTGGTTTTGAATT 59.238 29.630 0.00 0.00 39.27 2.17
3420 25784 7.221838 CACGTGTGAAAGTATTTGGTTTTGAAT 59.778 33.333 7.58 0.00 39.27 2.57
3421 25785 6.528423 CACGTGTGAAAGTATTTGGTTTTGAA 59.472 34.615 7.58 0.00 39.27 2.69
3422 25786 6.030849 CACGTGTGAAAGTATTTGGTTTTGA 58.969 36.000 7.58 0.00 39.27 2.69
3423 25787 5.231147 CCACGTGTGAAAGTATTTGGTTTTG 59.769 40.000 15.65 0.00 39.27 2.44
3424 25788 5.344884 CCACGTGTGAAAGTATTTGGTTTT 58.655 37.500 15.65 0.00 39.27 2.43
3425 25789 4.735283 GCCACGTGTGAAAGTATTTGGTTT 60.735 41.667 15.65 0.00 39.27 3.27
3426 25790 3.243267 GCCACGTGTGAAAGTATTTGGTT 60.243 43.478 15.65 0.00 39.27 3.67
3427 25791 2.292292 GCCACGTGTGAAAGTATTTGGT 59.708 45.455 15.65 0.00 39.27 3.67
3428 25792 2.664424 CGCCACGTGTGAAAGTATTTGG 60.664 50.000 15.65 0.00 39.27 3.28
3429 25793 2.032377 ACGCCACGTGTGAAAGTATTTG 60.032 45.455 15.65 0.00 37.23 2.32
3430 25794 2.215196 ACGCCACGTGTGAAAGTATTT 58.785 42.857 15.65 0.00 39.22 1.40
3431 25795 1.873698 ACGCCACGTGTGAAAGTATT 58.126 45.000 15.65 0.00 39.18 1.89
3432 25796 2.288334 TGTACGCCACGTGTGAAAGTAT 60.288 45.455 15.65 0.00 41.39 2.12
3433 25797 1.066757 TGTACGCCACGTGTGAAAGTA 59.933 47.619 15.65 8.07 41.39 2.24
3434 25798 0.179105 TGTACGCCACGTGTGAAAGT 60.179 50.000 15.65 9.02 41.39 2.66
3435 25799 0.506932 CTGTACGCCACGTGTGAAAG 59.493 55.000 15.65 0.00 41.39 2.62
3436 25800 0.102663 TCTGTACGCCACGTGTGAAA 59.897 50.000 15.65 0.00 41.39 2.69
3437 25801 0.102663 TTCTGTACGCCACGTGTGAA 59.897 50.000 15.65 4.46 41.39 3.18
3438 25802 0.102663 TTTCTGTACGCCACGTGTGA 59.897 50.000 15.65 0.00 41.39 3.58
3439 25803 0.931702 TTTTCTGTACGCCACGTGTG 59.068 50.000 15.65 9.17 41.39 3.82
3440 25804 1.654317 TTTTTCTGTACGCCACGTGT 58.346 45.000 15.65 0.00 41.39 4.49
3459 25823 9.471084 CCCATTTTAGAAATACGTTTTTGTCTT 57.529 29.630 8.77 0.00 0.00 3.01
3460 25824 7.597369 GCCCATTTTAGAAATACGTTTTTGTCT 59.403 33.333 8.77 3.77 0.00 3.41
3461 25825 7.148705 GGCCCATTTTAGAAATACGTTTTTGTC 60.149 37.037 8.77 0.00 0.00 3.18
3462 25826 6.647481 GGCCCATTTTAGAAATACGTTTTTGT 59.353 34.615 8.77 7.48 0.00 2.83
3463 25827 6.647067 TGGCCCATTTTAGAAATACGTTTTTG 59.353 34.615 8.77 0.00 0.00 2.44
3464 25828 6.760291 TGGCCCATTTTAGAAATACGTTTTT 58.240 32.000 0.00 3.51 0.00 1.94
3465 25829 6.347859 TGGCCCATTTTAGAAATACGTTTT 57.652 33.333 0.00 0.00 0.00 2.43
3466 25830 5.986501 TGGCCCATTTTAGAAATACGTTT 57.013 34.783 0.00 0.00 0.00 3.60
3467 25831 5.986501 TTGGCCCATTTTAGAAATACGTT 57.013 34.783 0.00 0.00 0.00 3.99
3468 25832 7.833285 ATATTGGCCCATTTTAGAAATACGT 57.167 32.000 0.00 0.00 0.00 3.57
3469 25833 9.541143 AAAATATTGGCCCATTTTAGAAATACG 57.459 29.630 14.73 0.00 33.66 3.06
3493 25857 3.922171 AATCCAGCCCAACAACAAAAA 57.078 38.095 0.00 0.00 0.00 1.94
3494 25858 3.922171 AAATCCAGCCCAACAACAAAA 57.078 38.095 0.00 0.00 0.00 2.44
3495 25859 3.922171 AAAATCCAGCCCAACAACAAA 57.078 38.095 0.00 0.00 0.00 2.83
3496 25860 3.054802 ACAAAAATCCAGCCCAACAACAA 60.055 39.130 0.00 0.00 0.00 2.83
3497 25861 2.503356 ACAAAAATCCAGCCCAACAACA 59.497 40.909 0.00 0.00 0.00 3.33
3498 25862 3.192541 ACAAAAATCCAGCCCAACAAC 57.807 42.857 0.00 0.00 0.00 3.32
3499 25863 3.922171 AACAAAAATCCAGCCCAACAA 57.078 38.095 0.00 0.00 0.00 2.83
3500 25864 3.922171 AAACAAAAATCCAGCCCAACA 57.078 38.095 0.00 0.00 0.00 3.33
3520 25884 4.276183 TGCGATTTGTAGGCTGTACAAAAA 59.724 37.500 21.14 7.37 46.38 1.94
3521 25885 3.815962 TGCGATTTGTAGGCTGTACAAAA 59.184 39.130 21.14 8.64 46.38 2.44
3523 25887 3.046968 TGCGATTTGTAGGCTGTACAA 57.953 42.857 0.00 0.00 35.84 2.41
3524 25888 2.739913 GTTGCGATTTGTAGGCTGTACA 59.260 45.455 0.00 0.00 0.00 2.90
3525 25889 2.739913 TGTTGCGATTTGTAGGCTGTAC 59.260 45.455 0.00 0.00 0.00 2.90
3526 25890 3.046968 TGTTGCGATTTGTAGGCTGTA 57.953 42.857 0.00 0.00 0.00 2.74
3527 25891 1.890876 TGTTGCGATTTGTAGGCTGT 58.109 45.000 0.00 0.00 0.00 4.40
3528 25892 2.987413 TTGTTGCGATTTGTAGGCTG 57.013 45.000 0.00 0.00 0.00 4.85
3529 25893 4.022416 TGAATTTGTTGCGATTTGTAGGCT 60.022 37.500 0.00 0.00 0.00 4.58
3530 25894 4.233789 TGAATTTGTTGCGATTTGTAGGC 58.766 39.130 0.00 0.00 0.00 3.93
3531 25895 6.949578 ATTGAATTTGTTGCGATTTGTAGG 57.050 33.333 0.00 0.00 0.00 3.18
3532 25896 9.305110 GAAAATTGAATTTGTTGCGATTTGTAG 57.695 29.630 3.62 0.00 31.77 2.74
3533 25897 9.039870 AGAAAATTGAATTTGTTGCGATTTGTA 57.960 25.926 3.62 0.00 31.77 2.41
3534 25898 7.918643 AGAAAATTGAATTTGTTGCGATTTGT 58.081 26.923 3.62 0.00 31.77 2.83
3535 25899 8.770850 AAGAAAATTGAATTTGTTGCGATTTG 57.229 26.923 3.62 0.00 31.77 2.32
3536 25900 9.862585 GTAAGAAAATTGAATTTGTTGCGATTT 57.137 25.926 3.62 0.00 31.77 2.17
3537 25901 9.039870 TGTAAGAAAATTGAATTTGTTGCGATT 57.960 25.926 3.62 0.00 33.08 3.34
3538 25902 8.487176 GTGTAAGAAAATTGAATTTGTTGCGAT 58.513 29.630 3.62 0.00 33.08 4.58
3539 25903 7.305705 CGTGTAAGAAAATTGAATTTGTTGCGA 60.306 33.333 3.62 0.00 33.08 5.10
3540 25904 6.780496 CGTGTAAGAAAATTGAATTTGTTGCG 59.220 34.615 3.62 5.07 33.08 4.85
3541 25905 7.617557 ACGTGTAAGAAAATTGAATTTGTTGC 58.382 30.769 3.62 5.71 31.74 4.17
3542 25906 9.618410 GAACGTGTAAGAAAATTGAATTTGTTG 57.382 29.630 3.62 0.00 31.77 3.33
3543 25907 8.528295 CGAACGTGTAAGAAAATTGAATTTGTT 58.472 29.630 3.62 4.17 31.77 2.83
3544 25908 7.698970 ACGAACGTGTAAGAAAATTGAATTTGT 59.301 29.630 3.62 0.00 31.77 2.83
3545 25909 7.990499 CACGAACGTGTAAGAAAATTGAATTTG 59.010 33.333 17.44 0.00 40.91 2.32
3546 25910 7.305763 GCACGAACGTGTAAGAAAATTGAATTT 60.306 33.333 24.28 0.00 46.90 1.82
3547 25911 6.141685 GCACGAACGTGTAAGAAAATTGAATT 59.858 34.615 24.28 0.00 46.90 2.17
3548 25912 5.623673 GCACGAACGTGTAAGAAAATTGAAT 59.376 36.000 24.28 0.00 46.90 2.57
3549 25913 4.965158 GCACGAACGTGTAAGAAAATTGAA 59.035 37.500 24.28 0.00 46.90 2.69
3550 25914 4.520078 GCACGAACGTGTAAGAAAATTGA 58.480 39.130 24.28 0.00 46.90 2.57
3551 25915 3.353767 CGCACGAACGTGTAAGAAAATTG 59.646 43.478 24.28 0.00 46.90 2.32
3552 25916 3.537806 CGCACGAACGTGTAAGAAAATT 58.462 40.909 24.28 0.00 46.90 1.82
3553 25917 2.096614 CCGCACGAACGTGTAAGAAAAT 60.097 45.455 24.28 0.00 46.90 1.82
3554 25918 1.258458 CCGCACGAACGTGTAAGAAAA 59.742 47.619 24.28 0.00 46.90 2.29
3555 25919 0.854062 CCGCACGAACGTGTAAGAAA 59.146 50.000 24.28 0.00 46.90 2.52
3556 25920 0.030504 TCCGCACGAACGTGTAAGAA 59.969 50.000 24.28 7.35 46.90 2.52
3557 25921 0.030504 TTCCGCACGAACGTGTAAGA 59.969 50.000 24.28 16.70 46.90 2.10
3558 25922 0.854062 TTTCCGCACGAACGTGTAAG 59.146 50.000 24.28 16.75 46.90 2.34
3559 25923 1.456544 GATTTCCGCACGAACGTGTAA 59.543 47.619 24.28 15.19 46.90 2.41
3560 25924 1.062258 GATTTCCGCACGAACGTGTA 58.938 50.000 24.28 10.90 46.90 2.90
3561 25925 0.599204 AGATTTCCGCACGAACGTGT 60.599 50.000 24.28 7.29 46.90 4.49
3563 25927 2.288961 ATAGATTTCCGCACGAACGT 57.711 45.000 0.00 0.00 0.00 3.99
3564 25928 4.266976 AGTTAATAGATTTCCGCACGAACG 59.733 41.667 0.00 0.00 0.00 3.95
3565 25929 5.713822 AGTTAATAGATTTCCGCACGAAC 57.286 39.130 0.00 0.00 0.00 3.95
3566 25930 7.096353 CGATAAGTTAATAGATTTCCGCACGAA 60.096 37.037 0.00 0.00 0.00 3.85
3567 25931 6.361481 CGATAAGTTAATAGATTTCCGCACGA 59.639 38.462 0.00 0.00 0.00 4.35
3568 25932 6.143438 ACGATAAGTTAATAGATTTCCGCACG 59.857 38.462 0.00 0.00 0.00 5.34
3569 25933 7.281484 CACGATAAGTTAATAGATTTCCGCAC 58.719 38.462 0.00 0.00 0.00 5.34
3570 25934 6.422701 CCACGATAAGTTAATAGATTTCCGCA 59.577 38.462 0.00 0.00 0.00 5.69
3571 25935 6.643770 TCCACGATAAGTTAATAGATTTCCGC 59.356 38.462 0.00 0.00 0.00 5.54
3572 25936 8.583810 TTCCACGATAAGTTAATAGATTTCCG 57.416 34.615 0.00 0.00 0.00 4.30
3642 26006 4.217550 CAGGGAGCTCGGTATTTTGAAAAA 59.782 41.667 7.83 0.00 0.00 1.94
3643 26007 3.756434 CAGGGAGCTCGGTATTTTGAAAA 59.244 43.478 7.83 0.00 0.00 2.29
3644 26008 3.343617 CAGGGAGCTCGGTATTTTGAAA 58.656 45.455 7.83 0.00 0.00 2.69
3645 26009 2.355716 CCAGGGAGCTCGGTATTTTGAA 60.356 50.000 7.83 0.00 0.00 2.69
3646 26010 1.209504 CCAGGGAGCTCGGTATTTTGA 59.790 52.381 7.83 0.00 0.00 2.69
3647 26011 1.209504 TCCAGGGAGCTCGGTATTTTG 59.790 52.381 7.83 0.00 0.00 2.44
3648 26012 1.486726 CTCCAGGGAGCTCGGTATTTT 59.513 52.381 7.83 0.00 35.31 1.82
3649 26013 1.123928 CTCCAGGGAGCTCGGTATTT 58.876 55.000 7.83 0.00 35.31 1.40
3650 26014 2.827715 CTCCAGGGAGCTCGGTATT 58.172 57.895 7.83 0.00 35.31 1.89
3651 26015 4.609098 CTCCAGGGAGCTCGGTAT 57.391 61.111 7.83 0.00 35.31 2.73
3674 26038 1.506262 CGGAAAATGCCAACGGAGG 59.494 57.895 0.00 0.00 0.00 4.30
3675 26039 1.154035 GCGGAAAATGCCAACGGAG 60.154 57.895 0.00 0.00 0.00 4.63
3676 26040 2.958576 GCGGAAAATGCCAACGGA 59.041 55.556 0.00 0.00 0.00 4.69
3677 26041 2.503809 CGCGGAAAATGCCAACGG 60.504 61.111 0.00 0.00 0.00 4.44
3678 26042 3.171911 GCGCGGAAAATGCCAACG 61.172 61.111 8.83 0.00 0.00 4.10
3679 26043 1.013524 ATTGCGCGGAAAATGCCAAC 61.014 50.000 19.18 0.00 0.00 3.77
3680 26044 0.735632 GATTGCGCGGAAAATGCCAA 60.736 50.000 19.18 5.49 0.00 4.52
3681 26045 1.153862 GATTGCGCGGAAAATGCCA 60.154 52.632 19.18 0.00 0.00 4.92
3682 26046 0.528249 ATGATTGCGCGGAAAATGCC 60.528 50.000 19.18 5.21 0.00 4.40
3683 26047 0.848305 GATGATTGCGCGGAAAATGC 59.152 50.000 19.18 7.98 0.00 3.56
3684 26048 2.191815 TGATGATTGCGCGGAAAATG 57.808 45.000 19.18 0.00 0.00 2.32
3685 26049 2.734670 CATGATGATTGCGCGGAAAAT 58.265 42.857 19.18 14.33 0.00 1.82
3686 26050 1.798446 GCATGATGATTGCGCGGAAAA 60.798 47.619 19.18 9.52 0.00 2.29
3687 26051 0.248580 GCATGATGATTGCGCGGAAA 60.249 50.000 19.18 1.17 0.00 3.13
3688 26052 1.096967 AGCATGATGATTGCGCGGAA 61.097 50.000 17.35 17.35 44.82 4.30
3689 26053 0.249826 TAGCATGATGATTGCGCGGA 60.250 50.000 8.83 0.00 44.82 5.54
3690 26054 0.800631 ATAGCATGATGATTGCGCGG 59.199 50.000 8.83 0.00 44.82 6.46
3691 26055 3.938778 ATATAGCATGATGATTGCGCG 57.061 42.857 0.00 0.00 44.82 6.86
3692 26056 6.183360 ACACTTATATAGCATGATGATTGCGC 60.183 38.462 0.00 0.00 44.82 6.09
3736 26100 1.065854 GCTCATGCTACACCTTGAGGT 60.066 52.381 0.00 0.00 42.21 3.85
3742 26106 3.354948 TGATTTGCTCATGCTACACCT 57.645 42.857 0.00 0.00 40.48 4.00
3784 26148 9.247861 AGCAAGATGATGGTAGAAAAAGTTATT 57.752 29.630 0.00 0.00 0.00 1.40
3785 26149 8.814038 AGCAAGATGATGGTAGAAAAAGTTAT 57.186 30.769 0.00 0.00 0.00 1.89
3786 26150 9.162764 GTAGCAAGATGATGGTAGAAAAAGTTA 57.837 33.333 0.00 0.00 34.24 2.24
3787 26151 7.885399 AGTAGCAAGATGATGGTAGAAAAAGTT 59.115 33.333 0.00 0.00 34.24 2.66
3788 26152 7.398024 AGTAGCAAGATGATGGTAGAAAAAGT 58.602 34.615 0.00 0.00 34.24 2.66
3790 26154 9.733556 TTAAGTAGCAAGATGATGGTAGAAAAA 57.266 29.630 0.00 0.00 34.24 1.94
3814 26193 6.862209 AGCATTCTGTTGTTCTTTTGTGTTA 58.138 32.000 0.00 0.00 0.00 2.41
3849 26228 6.558771 TTACTGTTGATGTTCCACATTCTG 57.441 37.500 0.00 0.00 39.27 3.02
3867 26247 6.974622 GTGTGCCCAAATCAGAATTATTACTG 59.025 38.462 0.00 0.00 35.72 2.74
3869 26249 6.862209 TGTGTGCCCAAATCAGAATTATTAC 58.138 36.000 0.00 0.00 0.00 1.89
3876 26256 5.245751 ACAATAATGTGTGCCCAAATCAGAA 59.754 36.000 0.00 0.00 38.69 3.02
3912 26292 5.238650 CGTGTAAGAGGGTGAAAAGTGAAAT 59.761 40.000 0.00 0.00 0.00 2.17
3914 26294 4.124238 CGTGTAAGAGGGTGAAAAGTGAA 58.876 43.478 0.00 0.00 0.00 3.18
3917 26297 2.158871 TGCGTGTAAGAGGGTGAAAAGT 60.159 45.455 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.