Multiple sequence alignment - TraesCS2D01G024300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G024300 chr2D 100.000 4061 0 0 1 4061 10820128 10816068 0.000000e+00 7500.0
1 TraesCS2D01G024300 chr2D 98.542 343 5 0 1 343 33629340 33629682 1.250000e-169 606.0
2 TraesCS2D01G024300 chr2D 98.542 343 5 0 1 343 135554851 135555193 1.250000e-169 606.0
3 TraesCS2D01G024300 chr2B 90.987 3395 188 42 745 4061 16040442 16037088 0.000000e+00 4466.0
4 TraesCS2D01G024300 chr2B 91.736 363 25 1 1571 1933 16005902 16006259 2.180000e-137 499.0
5 TraesCS2D01G024300 chr2B 88.235 170 12 6 686 850 16005578 16005744 3.200000e-46 196.0
6 TraesCS2D01G024300 chr2A 92.439 2579 137 29 659 3223 11331736 11334270 0.000000e+00 3629.0
7 TraesCS2D01G024300 chr2A 89.180 610 55 8 716 1323 11368399 11367799 0.000000e+00 750.0
8 TraesCS2D01G024300 chr2A 92.188 384 23 4 344 724 11369799 11369420 1.660000e-148 536.0
9 TraesCS2D01G024300 chr5D 98.271 347 5 1 1 346 175170534 175170188 1.250000e-169 606.0
10 TraesCS2D01G024300 chr5D 81.170 547 83 10 3318 3862 423218224 423218752 4.850000e-114 422.0
11 TraesCS2D01G024300 chr6D 97.989 348 6 1 1 347 95853191 95853538 1.610000e-168 603.0
12 TraesCS2D01G024300 chr6D 98.261 345 4 1 1 343 334326814 334326470 1.610000e-168 603.0
13 TraesCS2D01G024300 chr6D 98.256 344 5 1 1 343 8781403 8781060 5.810000e-168 601.0
14 TraesCS2D01G024300 chr6D 98.251 343 6 0 1 343 327860938 327860596 5.810000e-168 601.0
15 TraesCS2D01G024300 chr6D 98.251 343 6 0 1 343 406325818 406326160 5.810000e-168 601.0
16 TraesCS2D01G024300 chr6D 86.310 336 44 2 3325 3658 382565156 382565491 8.300000e-97 364.0
17 TraesCS2D01G024300 chr4D 98.251 343 6 0 1 343 82716516 82716858 5.810000e-168 601.0
18 TraesCS2D01G024300 chr4D 82.415 472 69 7 3397 3862 11905338 11905801 2.270000e-107 399.0
19 TraesCS2D01G024300 chr4D 88.235 68 8 0 609 676 355819623 355819690 9.360000e-12 82.4
20 TraesCS2D01G024300 chr1D 82.478 565 92 5 3301 3862 493684798 493684238 4.720000e-134 488.0
21 TraesCS2D01G024300 chr1D 80.684 585 105 6 3281 3862 493702388 493701809 8.010000e-122 448.0
22 TraesCS2D01G024300 chr7D 80.392 561 79 15 3318 3862 637714979 637715524 8.180000e-107 398.0
23 TraesCS2D01G024300 chr7D 84.171 398 51 5 3318 3704 484297940 484298336 3.830000e-100 375.0
24 TraesCS2D01G024300 chr1A 82.705 451 64 9 3318 3757 432625851 432625404 4.920000e-104 388.0
25 TraesCS2D01G024300 chr3A 78.571 560 103 11 3319 3868 474806623 474806071 1.800000e-93 353.0
26 TraesCS2D01G024300 chr3A 84.146 82 11 2 609 689 51601388 51601468 1.210000e-10 78.7
27 TraesCS2D01G024300 chr3B 79.828 466 64 12 3412 3862 94519084 94518634 3.050000e-81 313.0
28 TraesCS2D01G024300 chrUn 77.941 476 81 12 3397 3862 403545014 403544553 4.000000e-70 276.0
29 TraesCS2D01G024300 chrUn 81.221 213 39 1 3651 3862 289917031 289916819 1.940000e-38 171.0
30 TraesCS2D01G024300 chr3D 88.421 95 10 1 444 538 567092890 567092983 3.320000e-21 113.0
31 TraesCS2D01G024300 chr1B 86.139 101 12 2 580 678 548298061 548298161 1.540000e-19 108.0
32 TraesCS2D01G024300 chr4B 85.417 96 14 0 3273 3368 180904493 180904588 2.580000e-17 100.0
33 TraesCS2D01G024300 chr5A 82.979 94 15 1 583 676 488017583 488017491 2.600000e-12 84.2
34 TraesCS2D01G024300 chr5A 85.507 69 10 0 609 677 674997429 674997361 5.630000e-09 73.1
35 TraesCS2D01G024300 chr6B 90.385 52 5 0 2050 2101 14838289 14838238 7.280000e-08 69.4
36 TraesCS2D01G024300 chr5B 97.222 36 1 0 1971 2006 597225420 597225455 1.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G024300 chr2D 10816068 10820128 4060 True 7500.0 7500 100.0000 1 4061 1 chr2D.!!$R1 4060
1 TraesCS2D01G024300 chr2B 16037088 16040442 3354 True 4466.0 4466 90.9870 745 4061 1 chr2B.!!$R1 3316
2 TraesCS2D01G024300 chr2B 16005578 16006259 681 False 347.5 499 89.9855 686 1933 2 chr2B.!!$F1 1247
3 TraesCS2D01G024300 chr2A 11331736 11334270 2534 False 3629.0 3629 92.4390 659 3223 1 chr2A.!!$F1 2564
4 TraesCS2D01G024300 chr2A 11367799 11369799 2000 True 643.0 750 90.6840 344 1323 2 chr2A.!!$R1 979
5 TraesCS2D01G024300 chr5D 423218224 423218752 528 False 422.0 422 81.1700 3318 3862 1 chr5D.!!$F1 544
6 TraesCS2D01G024300 chr1D 493684238 493684798 560 True 488.0 488 82.4780 3301 3862 1 chr1D.!!$R1 561
7 TraesCS2D01G024300 chr1D 493701809 493702388 579 True 448.0 448 80.6840 3281 3862 1 chr1D.!!$R2 581
8 TraesCS2D01G024300 chr7D 637714979 637715524 545 False 398.0 398 80.3920 3318 3862 1 chr7D.!!$F2 544
9 TraesCS2D01G024300 chr3A 474806071 474806623 552 True 353.0 353 78.5710 3319 3868 1 chr3A.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.103572 CCTTGCTTGCTTGTGTGCTT 59.896 50.0 0.00 0.0 0.00 3.91 F
764 1802 0.470080 ATCGTCGATCTGGGGGACAT 60.470 55.0 0.75 0.0 0.00 3.06 F
1055 2102 0.686112 CACCTCCTCCTCCTCCTCAC 60.686 65.0 0.00 0.0 0.00 3.51 F
2616 3672 0.251354 ACTACTACGGCTCCTCGTCA 59.749 55.0 0.00 0.0 42.82 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 2196 0.037232 CGGAGGAGTTGAGGTGGAAC 60.037 60.0 0.0 0.0 0.00 3.62 R
1953 3003 0.670854 GGAGGAACAGCCAGAACGAC 60.671 60.0 0.0 0.0 40.02 4.34 R
2931 3987 0.331278 TCCCCATGTTGTCCACCATC 59.669 55.0 0.0 0.0 0.00 3.51 R
3761 4907 0.740868 CCAATGACGACGCCTCACAT 60.741 55.0 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.412112 GCGCGAGGAGAATACGGT 59.588 61.111 12.10 0.00 0.00 4.83
18 19 1.944676 GCGCGAGGAGAATACGGTG 60.945 63.158 12.10 0.00 0.00 4.94
19 20 1.299165 CGCGAGGAGAATACGGTGG 60.299 63.158 0.00 0.00 0.00 4.61
20 21 1.591863 GCGAGGAGAATACGGTGGC 60.592 63.158 0.00 0.00 0.00 5.01
21 22 1.067582 CGAGGAGAATACGGTGGCC 59.932 63.158 0.00 0.00 0.00 5.36
22 23 1.446366 GAGGAGAATACGGTGGCCC 59.554 63.158 0.00 0.00 0.00 5.80
23 24 1.003051 AGGAGAATACGGTGGCCCT 59.997 57.895 0.00 0.00 0.00 5.19
24 25 0.263765 AGGAGAATACGGTGGCCCTA 59.736 55.000 0.00 0.00 0.00 3.53
25 26 0.680061 GGAGAATACGGTGGCCCTAG 59.320 60.000 0.00 0.00 0.00 3.02
26 27 1.411041 GAGAATACGGTGGCCCTAGT 58.589 55.000 0.00 0.00 0.00 2.57
27 28 1.068741 GAGAATACGGTGGCCCTAGTG 59.931 57.143 0.00 0.00 0.00 2.74
28 29 0.106149 GAATACGGTGGCCCTAGTGG 59.894 60.000 0.00 0.00 37.09 4.00
38 39 1.609783 CCCTAGTGGCTTCTTGGGG 59.390 63.158 16.68 11.51 43.38 4.96
39 40 0.914417 CCCTAGTGGCTTCTTGGGGA 60.914 60.000 16.68 0.00 43.38 4.81
40 41 0.543749 CCTAGTGGCTTCTTGGGGAG 59.456 60.000 0.00 0.00 0.00 4.30
41 42 0.107459 CTAGTGGCTTCTTGGGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
42 43 0.840288 TAGTGGCTTCTTGGGGAGCA 60.840 55.000 0.00 0.00 0.00 4.26
43 44 1.000396 GTGGCTTCTTGGGGAGCAT 60.000 57.895 0.00 0.00 0.00 3.79
44 45 0.613012 GTGGCTTCTTGGGGAGCATT 60.613 55.000 0.00 0.00 0.00 3.56
45 46 0.612732 TGGCTTCTTGGGGAGCATTG 60.613 55.000 0.00 0.00 0.00 2.82
46 47 0.613012 GGCTTCTTGGGGAGCATTGT 60.613 55.000 0.00 0.00 0.00 2.71
47 48 0.529378 GCTTCTTGGGGAGCATTGTG 59.471 55.000 0.00 0.00 0.00 3.33
48 49 0.529378 CTTCTTGGGGAGCATTGTGC 59.471 55.000 0.00 0.00 45.46 4.57
65 66 3.041940 CGTCCACACCGCTCCAAC 61.042 66.667 0.00 0.00 0.00 3.77
66 67 3.041940 GTCCACACCGCTCCAACG 61.042 66.667 0.00 0.00 0.00 4.10
84 85 3.277962 GGAGACGTACTTCCCCTCA 57.722 57.895 0.00 0.00 0.00 3.86
85 86 1.553706 GGAGACGTACTTCCCCTCAA 58.446 55.000 0.00 0.00 0.00 3.02
86 87 1.897802 GGAGACGTACTTCCCCTCAAA 59.102 52.381 0.00 0.00 0.00 2.69
87 88 2.301009 GGAGACGTACTTCCCCTCAAAA 59.699 50.000 0.00 0.00 0.00 2.44
88 89 3.586892 GAGACGTACTTCCCCTCAAAAG 58.413 50.000 0.00 0.00 0.00 2.27
89 90 2.302157 AGACGTACTTCCCCTCAAAAGG 59.698 50.000 0.00 0.00 42.95 3.11
90 91 2.301009 GACGTACTTCCCCTCAAAAGGA 59.699 50.000 0.00 0.00 46.67 3.36
91 92 2.707257 ACGTACTTCCCCTCAAAAGGAA 59.293 45.455 0.00 0.00 46.67 3.36
96 97 2.971901 TCCCCTCAAAAGGAAGGAAC 57.028 50.000 0.00 0.00 46.67 3.62
97 98 2.428901 TCCCCTCAAAAGGAAGGAACT 58.571 47.619 0.00 0.00 46.67 3.01
111 112 3.329929 AGGAACTTCGGTAACACATCC 57.670 47.619 0.00 0.00 27.25 3.51
112 113 2.904434 AGGAACTTCGGTAACACATCCT 59.096 45.455 0.00 0.00 27.25 3.24
113 114 3.056035 AGGAACTTCGGTAACACATCCTC 60.056 47.826 0.00 0.00 27.25 3.71
114 115 2.649331 ACTTCGGTAACACATCCTCG 57.351 50.000 0.00 0.00 0.00 4.63
115 116 1.891150 ACTTCGGTAACACATCCTCGT 59.109 47.619 0.00 0.00 0.00 4.18
116 117 2.094854 ACTTCGGTAACACATCCTCGTC 60.095 50.000 0.00 0.00 0.00 4.20
117 118 1.830279 TCGGTAACACATCCTCGTCT 58.170 50.000 0.00 0.00 0.00 4.18
118 119 2.165167 TCGGTAACACATCCTCGTCTT 58.835 47.619 0.00 0.00 0.00 3.01
119 120 2.163010 TCGGTAACACATCCTCGTCTTC 59.837 50.000 0.00 0.00 0.00 2.87
120 121 2.094906 CGGTAACACATCCTCGTCTTCA 60.095 50.000 0.00 0.00 0.00 3.02
121 122 3.251571 GGTAACACATCCTCGTCTTCAC 58.748 50.000 0.00 0.00 0.00 3.18
122 123 2.457366 AACACATCCTCGTCTTCACC 57.543 50.000 0.00 0.00 0.00 4.02
123 124 0.243907 ACACATCCTCGTCTTCACCG 59.756 55.000 0.00 0.00 0.00 4.94
124 125 0.458543 CACATCCTCGTCTTCACCGG 60.459 60.000 0.00 0.00 0.00 5.28
125 126 1.519455 CATCCTCGTCTTCACCGGC 60.519 63.158 0.00 0.00 0.00 6.13
126 127 1.682684 ATCCTCGTCTTCACCGGCT 60.683 57.895 0.00 0.00 0.00 5.52
127 128 1.668101 ATCCTCGTCTTCACCGGCTC 61.668 60.000 0.00 0.00 0.00 4.70
128 129 2.182030 CTCGTCTTCACCGGCTCC 59.818 66.667 0.00 0.00 0.00 4.70
129 130 2.599281 TCGTCTTCACCGGCTCCA 60.599 61.111 0.00 0.00 0.00 3.86
130 131 2.432628 CGTCTTCACCGGCTCCAC 60.433 66.667 0.00 0.00 0.00 4.02
131 132 2.932234 CGTCTTCACCGGCTCCACT 61.932 63.158 0.00 0.00 0.00 4.00
132 133 1.079750 GTCTTCACCGGCTCCACTC 60.080 63.158 0.00 0.00 0.00 3.51
133 134 1.228894 TCTTCACCGGCTCCACTCT 60.229 57.895 0.00 0.00 0.00 3.24
134 135 0.832135 TCTTCACCGGCTCCACTCTT 60.832 55.000 0.00 0.00 0.00 2.85
135 136 0.671781 CTTCACCGGCTCCACTCTTG 60.672 60.000 0.00 0.00 0.00 3.02
136 137 2.046892 CACCGGCTCCACTCTTGG 60.047 66.667 0.00 0.00 45.56 3.61
137 138 2.526873 ACCGGCTCCACTCTTGGT 60.527 61.111 0.00 0.00 44.35 3.67
138 139 2.147387 ACCGGCTCCACTCTTGGTT 61.147 57.895 0.00 0.00 44.35 3.67
139 140 0.834687 ACCGGCTCCACTCTTGGTTA 60.835 55.000 0.00 0.00 44.35 2.85
140 141 0.541863 CCGGCTCCACTCTTGGTTAT 59.458 55.000 0.00 0.00 44.35 1.89
141 142 1.473434 CCGGCTCCACTCTTGGTTATC 60.473 57.143 0.00 0.00 44.35 1.75
142 143 1.482593 CGGCTCCACTCTTGGTTATCT 59.517 52.381 0.00 0.00 44.35 1.98
143 144 2.482142 CGGCTCCACTCTTGGTTATCTC 60.482 54.545 0.00 0.00 44.35 2.75
144 145 2.482142 GGCTCCACTCTTGGTTATCTCG 60.482 54.545 0.00 0.00 44.35 4.04
145 146 2.166664 GCTCCACTCTTGGTTATCTCGT 59.833 50.000 0.00 0.00 44.35 4.18
146 147 3.735514 GCTCCACTCTTGGTTATCTCGTC 60.736 52.174 0.00 0.00 44.35 4.20
147 148 2.758979 TCCACTCTTGGTTATCTCGTCC 59.241 50.000 0.00 0.00 44.35 4.79
148 149 2.159085 CCACTCTTGGTTATCTCGTCCC 60.159 54.545 0.00 0.00 38.23 4.46
149 150 2.761208 CACTCTTGGTTATCTCGTCCCT 59.239 50.000 0.00 0.00 0.00 4.20
150 151 3.195825 CACTCTTGGTTATCTCGTCCCTT 59.804 47.826 0.00 0.00 0.00 3.95
151 152 3.838903 ACTCTTGGTTATCTCGTCCCTTT 59.161 43.478 0.00 0.00 0.00 3.11
152 153 5.021458 ACTCTTGGTTATCTCGTCCCTTTA 58.979 41.667 0.00 0.00 0.00 1.85
153 154 5.105432 ACTCTTGGTTATCTCGTCCCTTTAC 60.105 44.000 0.00 0.00 0.00 2.01
154 155 5.021458 TCTTGGTTATCTCGTCCCTTTACT 58.979 41.667 0.00 0.00 0.00 2.24
155 156 5.482878 TCTTGGTTATCTCGTCCCTTTACTT 59.517 40.000 0.00 0.00 0.00 2.24
156 157 5.750352 TGGTTATCTCGTCCCTTTACTTT 57.250 39.130 0.00 0.00 0.00 2.66
157 158 5.727434 TGGTTATCTCGTCCCTTTACTTTC 58.273 41.667 0.00 0.00 0.00 2.62
158 159 4.802563 GGTTATCTCGTCCCTTTACTTTCG 59.197 45.833 0.00 0.00 0.00 3.46
159 160 2.358939 TCTCGTCCCTTTACTTTCGC 57.641 50.000 0.00 0.00 0.00 4.70
160 161 1.614903 TCTCGTCCCTTTACTTTCGCA 59.385 47.619 0.00 0.00 0.00 5.10
161 162 2.036217 TCTCGTCCCTTTACTTTCGCAA 59.964 45.455 0.00 0.00 0.00 4.85
162 163 2.409975 TCGTCCCTTTACTTTCGCAAG 58.590 47.619 0.00 0.00 35.92 4.01
163 164 1.136057 CGTCCCTTTACTTTCGCAAGC 60.136 52.381 0.00 0.00 32.57 4.01
164 165 2.152016 GTCCCTTTACTTTCGCAAGCT 58.848 47.619 0.00 0.00 32.57 3.74
165 166 2.552743 GTCCCTTTACTTTCGCAAGCTT 59.447 45.455 0.00 0.00 32.57 3.74
166 167 3.749609 GTCCCTTTACTTTCGCAAGCTTA 59.250 43.478 0.00 0.00 32.57 3.09
167 168 3.749609 TCCCTTTACTTTCGCAAGCTTAC 59.250 43.478 0.00 0.00 32.57 2.34
168 169 3.751698 CCCTTTACTTTCGCAAGCTTACT 59.248 43.478 0.00 0.00 32.57 2.24
169 170 4.215613 CCCTTTACTTTCGCAAGCTTACTT 59.784 41.667 0.00 0.00 36.19 2.24
182 183 6.575162 CAAGCTTACTTGTGTTAAATCCCT 57.425 37.500 0.00 0.00 46.84 4.20
183 184 6.981722 CAAGCTTACTTGTGTTAAATCCCTT 58.018 36.000 0.00 0.00 46.84 3.95
184 185 6.575162 AGCTTACTTGTGTTAAATCCCTTG 57.425 37.500 0.00 0.00 0.00 3.61
185 186 5.048013 AGCTTACTTGTGTTAAATCCCTTGC 60.048 40.000 0.00 0.00 0.00 4.01
186 187 5.048013 GCTTACTTGTGTTAAATCCCTTGCT 60.048 40.000 0.00 0.00 0.00 3.91
187 188 6.516693 GCTTACTTGTGTTAAATCCCTTGCTT 60.517 38.462 0.00 0.00 0.00 3.91
188 189 5.200368 ACTTGTGTTAAATCCCTTGCTTG 57.800 39.130 0.00 0.00 0.00 4.01
189 190 3.658757 TGTGTTAAATCCCTTGCTTGC 57.341 42.857 0.00 0.00 0.00 4.01
190 191 3.230134 TGTGTTAAATCCCTTGCTTGCT 58.770 40.909 0.00 0.00 0.00 3.91
191 192 3.640967 TGTGTTAAATCCCTTGCTTGCTT 59.359 39.130 0.00 0.00 0.00 3.91
192 193 3.989817 GTGTTAAATCCCTTGCTTGCTTG 59.010 43.478 0.00 0.00 0.00 4.01
193 194 3.640967 TGTTAAATCCCTTGCTTGCTTGT 59.359 39.130 0.00 0.00 0.00 3.16
194 195 2.825861 AAATCCCTTGCTTGCTTGTG 57.174 45.000 0.00 0.00 0.00 3.33
195 196 1.708341 AATCCCTTGCTTGCTTGTGT 58.292 45.000 0.00 0.00 0.00 3.72
196 197 0.963962 ATCCCTTGCTTGCTTGTGTG 59.036 50.000 0.00 0.00 0.00 3.82
197 198 1.300388 CCCTTGCTTGCTTGTGTGC 60.300 57.895 0.00 0.00 0.00 4.57
198 199 1.737816 CCTTGCTTGCTTGTGTGCT 59.262 52.632 0.00 0.00 0.00 4.40
199 200 0.103572 CCTTGCTTGCTTGTGTGCTT 59.896 50.000 0.00 0.00 0.00 3.91
200 201 1.205657 CTTGCTTGCTTGTGTGCTTG 58.794 50.000 0.00 0.00 0.00 4.01
201 202 0.531657 TTGCTTGCTTGTGTGCTTGT 59.468 45.000 0.00 0.00 0.00 3.16
202 203 0.531657 TGCTTGCTTGTGTGCTTGTT 59.468 45.000 0.00 0.00 0.00 2.83
203 204 0.925466 GCTTGCTTGTGTGCTTGTTG 59.075 50.000 0.00 0.00 0.00 3.33
204 205 1.736696 GCTTGCTTGTGTGCTTGTTGT 60.737 47.619 0.00 0.00 0.00 3.32
205 206 2.187707 CTTGCTTGTGTGCTTGTTGTC 58.812 47.619 0.00 0.00 0.00 3.18
206 207 1.172175 TGCTTGTGTGCTTGTTGTCA 58.828 45.000 0.00 0.00 0.00 3.58
207 208 1.750206 TGCTTGTGTGCTTGTTGTCAT 59.250 42.857 0.00 0.00 0.00 3.06
208 209 2.166050 TGCTTGTGTGCTTGTTGTCATT 59.834 40.909 0.00 0.00 0.00 2.57
209 210 2.536803 GCTTGTGTGCTTGTTGTCATTG 59.463 45.455 0.00 0.00 0.00 2.82
210 211 2.206815 TGTGTGCTTGTTGTCATTGC 57.793 45.000 0.00 0.00 0.00 3.56
211 212 1.475682 TGTGTGCTTGTTGTCATTGCA 59.524 42.857 0.00 0.00 33.54 4.08
212 213 2.101082 TGTGTGCTTGTTGTCATTGCAT 59.899 40.909 0.00 0.00 36.45 3.96
213 214 2.727798 GTGTGCTTGTTGTCATTGCATC 59.272 45.455 0.00 0.00 36.45 3.91
214 215 2.361438 TGTGCTTGTTGTCATTGCATCA 59.639 40.909 0.00 0.00 36.45 3.07
215 216 3.006003 TGTGCTTGTTGTCATTGCATCAT 59.994 39.130 0.00 0.00 36.45 2.45
216 217 4.217983 TGTGCTTGTTGTCATTGCATCATA 59.782 37.500 0.00 0.00 36.45 2.15
217 218 5.105675 TGTGCTTGTTGTCATTGCATCATAT 60.106 36.000 0.00 0.00 36.45 1.78
218 219 6.095160 TGTGCTTGTTGTCATTGCATCATATA 59.905 34.615 0.00 0.00 36.45 0.86
219 220 6.635641 GTGCTTGTTGTCATTGCATCATATAG 59.364 38.462 0.00 0.00 36.45 1.31
220 221 6.147581 GCTTGTTGTCATTGCATCATATAGG 58.852 40.000 0.00 0.00 0.00 2.57
221 222 6.238842 GCTTGTTGTCATTGCATCATATAGGT 60.239 38.462 0.00 0.00 0.00 3.08
222 223 7.643569 TTGTTGTCATTGCATCATATAGGTT 57.356 32.000 0.00 0.00 0.00 3.50
223 224 7.030075 TGTTGTCATTGCATCATATAGGTTG 57.970 36.000 0.00 0.00 0.00 3.77
224 225 5.694231 TGTCATTGCATCATATAGGTTGC 57.306 39.130 12.38 12.38 35.67 4.17
225 226 5.379187 TGTCATTGCATCATATAGGTTGCT 58.621 37.500 18.26 0.33 36.10 3.91
226 227 5.471116 TGTCATTGCATCATATAGGTTGCTC 59.529 40.000 18.26 7.27 36.10 4.26
227 228 5.471116 GTCATTGCATCATATAGGTTGCTCA 59.529 40.000 18.26 8.17 36.10 4.26
228 229 5.471116 TCATTGCATCATATAGGTTGCTCAC 59.529 40.000 18.26 0.00 36.10 3.51
229 230 4.694760 TGCATCATATAGGTTGCTCACT 57.305 40.909 18.26 0.00 36.10 3.41
230 231 5.039920 TGCATCATATAGGTTGCTCACTT 57.960 39.130 18.26 0.00 36.10 3.16
231 232 6.173427 TGCATCATATAGGTTGCTCACTTA 57.827 37.500 18.26 0.00 36.10 2.24
232 233 6.226052 TGCATCATATAGGTTGCTCACTTAG 58.774 40.000 18.26 0.00 36.10 2.18
233 234 6.183361 TGCATCATATAGGTTGCTCACTTAGT 60.183 38.462 18.26 0.00 36.10 2.24
234 235 6.708054 GCATCATATAGGTTGCTCACTTAGTT 59.292 38.462 12.08 0.00 32.41 2.24
235 236 7.307632 GCATCATATAGGTTGCTCACTTAGTTG 60.308 40.741 12.08 0.00 32.41 3.16
236 237 6.049149 TCATATAGGTTGCTCACTTAGTTGC 58.951 40.000 1.04 1.04 0.00 4.17
237 238 2.638480 AGGTTGCTCACTTAGTTGCA 57.362 45.000 5.85 5.85 0.00 4.08
238 239 3.146104 AGGTTGCTCACTTAGTTGCAT 57.854 42.857 9.88 0.00 35.27 3.96
239 240 4.286297 AGGTTGCTCACTTAGTTGCATA 57.714 40.909 9.88 1.20 35.27 3.14
240 241 4.848357 AGGTTGCTCACTTAGTTGCATAT 58.152 39.130 9.88 0.00 35.27 1.78
241 242 4.878397 AGGTTGCTCACTTAGTTGCATATC 59.122 41.667 9.88 5.35 35.27 1.63
242 243 4.878397 GGTTGCTCACTTAGTTGCATATCT 59.122 41.667 9.88 0.00 35.27 1.98
243 244 6.049149 GGTTGCTCACTTAGTTGCATATCTA 58.951 40.000 9.88 0.00 35.27 1.98
244 245 6.201806 GGTTGCTCACTTAGTTGCATATCTAG 59.798 42.308 9.88 0.00 35.27 2.43
245 246 6.715347 TGCTCACTTAGTTGCATATCTAGA 57.285 37.500 5.85 0.00 0.00 2.43
246 247 6.507900 TGCTCACTTAGTTGCATATCTAGAC 58.492 40.000 0.00 0.00 0.00 2.59
247 248 6.096846 TGCTCACTTAGTTGCATATCTAGACA 59.903 38.462 0.00 0.00 0.00 3.41
248 249 6.980978 GCTCACTTAGTTGCATATCTAGACAA 59.019 38.462 0.00 0.00 0.00 3.18
249 250 7.043059 GCTCACTTAGTTGCATATCTAGACAAC 60.043 40.741 13.43 13.43 42.08 3.32
250 251 7.265673 TCACTTAGTTGCATATCTAGACAACC 58.734 38.462 16.29 3.97 42.61 3.77
251 252 7.124298 TCACTTAGTTGCATATCTAGACAACCT 59.876 37.037 16.29 9.28 42.61 3.50
252 253 8.414003 CACTTAGTTGCATATCTAGACAACCTA 58.586 37.037 16.29 8.58 42.61 3.08
253 254 8.414778 ACTTAGTTGCATATCTAGACAACCTAC 58.585 37.037 16.29 5.11 42.61 3.18
254 255 8.534954 TTAGTTGCATATCTAGACAACCTACT 57.465 34.615 16.29 10.57 42.61 2.57
255 256 7.425224 AGTTGCATATCTAGACAACCTACTT 57.575 36.000 16.29 0.58 42.61 2.24
256 257 7.852263 AGTTGCATATCTAGACAACCTACTTT 58.148 34.615 16.29 0.03 42.61 2.66
257 258 7.766278 AGTTGCATATCTAGACAACCTACTTTG 59.234 37.037 16.29 0.00 42.61 2.77
258 259 7.418337 TGCATATCTAGACAACCTACTTTGA 57.582 36.000 0.00 0.00 0.00 2.69
259 260 8.023021 TGCATATCTAGACAACCTACTTTGAT 57.977 34.615 0.00 0.00 0.00 2.57
260 261 7.928167 TGCATATCTAGACAACCTACTTTGATG 59.072 37.037 0.00 0.00 0.00 3.07
261 262 7.095439 GCATATCTAGACAACCTACTTTGATGC 60.095 40.741 0.00 0.00 0.00 3.91
262 263 5.738619 TCTAGACAACCTACTTTGATGCA 57.261 39.130 0.00 0.00 0.00 3.96
263 264 6.109156 TCTAGACAACCTACTTTGATGCAA 57.891 37.500 0.00 0.00 0.00 4.08
264 265 6.530120 TCTAGACAACCTACTTTGATGCAAA 58.470 36.000 0.00 0.00 0.00 3.68
304 305 8.365399 AGAAAAGCTAAAAATTGTTAGTTGCC 57.635 30.769 15.37 4.63 34.20 4.52
305 306 8.204160 AGAAAAGCTAAAAATTGTTAGTTGCCT 58.796 29.630 15.37 6.43 34.20 4.75
306 307 9.471084 GAAAAGCTAAAAATTGTTAGTTGCCTA 57.529 29.630 15.37 0.00 34.20 3.93
307 308 9.996554 AAAAGCTAAAAATTGTTAGTTGCCTAT 57.003 25.926 15.37 0.00 34.20 2.57
308 309 9.996554 AAAGCTAAAAATTGTTAGTTGCCTATT 57.003 25.926 15.37 0.13 34.20 1.73
309 310 9.639601 AAGCTAAAAATTGTTAGTTGCCTATTC 57.360 29.630 15.37 0.00 34.20 1.75
310 311 8.802267 AGCTAAAAATTGTTAGTTGCCTATTCA 58.198 29.630 15.37 0.00 34.20 2.57
311 312 9.586435 GCTAAAAATTGTTAGTTGCCTATTCAT 57.414 29.630 15.37 0.00 34.20 2.57
314 315 6.715347 AATTGTTAGTTGCCTATTCATCCC 57.285 37.500 0.00 0.00 0.00 3.85
315 316 4.164843 TGTTAGTTGCCTATTCATCCCC 57.835 45.455 0.00 0.00 0.00 4.81
316 317 3.117663 TGTTAGTTGCCTATTCATCCCCC 60.118 47.826 0.00 0.00 0.00 5.40
317 318 1.912862 AGTTGCCTATTCATCCCCCT 58.087 50.000 0.00 0.00 0.00 4.79
318 319 1.777272 AGTTGCCTATTCATCCCCCTC 59.223 52.381 0.00 0.00 0.00 4.30
319 320 1.777272 GTTGCCTATTCATCCCCCTCT 59.223 52.381 0.00 0.00 0.00 3.69
320 321 2.979678 GTTGCCTATTCATCCCCCTCTA 59.020 50.000 0.00 0.00 0.00 2.43
321 322 2.907892 TGCCTATTCATCCCCCTCTAG 58.092 52.381 0.00 0.00 0.00 2.43
322 323 2.182312 TGCCTATTCATCCCCCTCTAGT 59.818 50.000 0.00 0.00 0.00 2.57
323 324 2.835156 GCCTATTCATCCCCCTCTAGTC 59.165 54.545 0.00 0.00 0.00 2.59
324 325 3.758787 GCCTATTCATCCCCCTCTAGTCA 60.759 52.174 0.00 0.00 0.00 3.41
325 326 4.493618 CCTATTCATCCCCCTCTAGTCAA 58.506 47.826 0.00 0.00 0.00 3.18
326 327 4.284746 CCTATTCATCCCCCTCTAGTCAAC 59.715 50.000 0.00 0.00 0.00 3.18
327 328 3.491766 TTCATCCCCCTCTAGTCAACT 57.508 47.619 0.00 0.00 0.00 3.16
328 329 4.620086 TTCATCCCCCTCTAGTCAACTA 57.380 45.455 0.00 0.00 0.00 2.24
329 330 4.834406 TCATCCCCCTCTAGTCAACTAT 57.166 45.455 0.00 0.00 0.00 2.12
330 331 5.942977 TCATCCCCCTCTAGTCAACTATA 57.057 43.478 0.00 0.00 0.00 1.31
331 332 6.485388 TCATCCCCCTCTAGTCAACTATAT 57.515 41.667 0.00 0.00 0.00 0.86
332 333 6.494952 TCATCCCCCTCTAGTCAACTATATC 58.505 44.000 0.00 0.00 0.00 1.63
333 334 4.919793 TCCCCCTCTAGTCAACTATATCG 58.080 47.826 0.00 0.00 0.00 2.92
334 335 4.600547 TCCCCCTCTAGTCAACTATATCGA 59.399 45.833 0.00 0.00 0.00 3.59
335 336 5.253330 TCCCCCTCTAGTCAACTATATCGAT 59.747 44.000 2.16 2.16 0.00 3.59
336 337 5.591067 CCCCCTCTAGTCAACTATATCGATC 59.409 48.000 0.00 0.00 0.00 3.69
337 338 5.591067 CCCCTCTAGTCAACTATATCGATCC 59.409 48.000 0.00 0.00 0.00 3.36
338 339 6.419791 CCCTCTAGTCAACTATATCGATCCT 58.580 44.000 0.00 0.00 0.00 3.24
339 340 6.887545 CCCTCTAGTCAACTATATCGATCCTT 59.112 42.308 0.00 0.00 0.00 3.36
340 341 7.394923 CCCTCTAGTCAACTATATCGATCCTTT 59.605 40.741 0.00 0.00 0.00 3.11
341 342 8.455682 CCTCTAGTCAACTATATCGATCCTTTC 58.544 40.741 0.00 0.00 0.00 2.62
342 343 8.919777 TCTAGTCAACTATATCGATCCTTTCA 57.080 34.615 0.00 0.00 0.00 2.69
346 347 6.364706 GTCAACTATATCGATCCTTTCAGCAG 59.635 42.308 0.00 0.00 0.00 4.24
360 361 3.818961 TCAGCAGAAATCTTTCTTGCG 57.181 42.857 2.45 7.22 44.70 4.85
362 363 3.187227 TCAGCAGAAATCTTTCTTGCGAC 59.813 43.478 2.45 0.00 44.70 5.19
368 369 6.402550 GCAGAAATCTTTCTTGCGACAGATTA 60.403 38.462 2.45 0.00 44.70 1.75
396 397 2.794350 GCAAAAGAAAACACCACCATCG 59.206 45.455 0.00 0.00 0.00 3.84
400 401 2.925724 AGAAAACACCACCATCGTTCA 58.074 42.857 0.00 0.00 0.00 3.18
403 404 0.882927 AACACCACCATCGTTCACCG 60.883 55.000 0.00 0.00 38.13 4.94
422 423 4.864334 GAGCCTGCCGGATGGTGG 62.864 72.222 5.05 0.00 37.67 4.61
516 517 0.685785 TCGCTGCCATCTTCCTCTCT 60.686 55.000 0.00 0.00 0.00 3.10
541 542 1.718757 GGTGGACGCCATTGATGAGC 61.719 60.000 1.90 0.00 35.28 4.26
543 544 1.026182 TGGACGCCATTGATGAGCAC 61.026 55.000 0.00 0.00 0.00 4.40
544 545 0.745845 GGACGCCATTGATGAGCACT 60.746 55.000 0.00 0.00 0.00 4.40
546 547 0.806868 ACGCCATTGATGAGCACTTG 59.193 50.000 0.00 0.00 0.00 3.16
547 548 0.806868 CGCCATTGATGAGCACTTGT 59.193 50.000 0.00 0.00 0.00 3.16
548 549 1.466866 CGCCATTGATGAGCACTTGTG 60.467 52.381 0.00 0.00 0.00 3.33
549 550 1.542915 GCCATTGATGAGCACTTGTGT 59.457 47.619 2.61 0.00 0.00 3.72
550 551 2.749076 GCCATTGATGAGCACTTGTGTA 59.251 45.455 2.61 0.00 0.00 2.90
551 552 3.426695 GCCATTGATGAGCACTTGTGTAC 60.427 47.826 2.61 0.00 0.00 2.90
553 554 4.142752 CCATTGATGAGCACTTGTGTACAG 60.143 45.833 0.00 0.00 0.00 2.74
554 555 4.335400 TTGATGAGCACTTGTGTACAGA 57.665 40.909 0.00 0.00 0.00 3.41
579 581 4.023291 AGAGGTTGGAGAAGAGATGAGAC 58.977 47.826 0.00 0.00 0.00 3.36
586 588 2.878406 GAGAAGAGATGAGACGAGGGAG 59.122 54.545 0.00 0.00 0.00 4.30
707 711 2.364970 TGGCATCCTTTTCCAACAACAG 59.635 45.455 0.00 0.00 0.00 3.16
764 1802 0.470080 ATCGTCGATCTGGGGGACAT 60.470 55.000 0.75 0.00 0.00 3.06
930 1973 2.105477 CCCAATCTTCCTCCGTCATCAT 59.895 50.000 0.00 0.00 0.00 2.45
934 1977 1.676529 TCTTCCTCCGTCATCATCGAC 59.323 52.381 0.00 0.00 0.00 4.20
1036 2083 4.832608 CGCCGCCACCCTTCCTAC 62.833 72.222 0.00 0.00 0.00 3.18
1049 2096 1.289530 CTTCCTACACCTCCTCCTCCT 59.710 57.143 0.00 0.00 0.00 3.69
1050 2097 0.927767 TCCTACACCTCCTCCTCCTC 59.072 60.000 0.00 0.00 0.00 3.71
1055 2102 0.686112 CACCTCCTCCTCCTCCTCAC 60.686 65.000 0.00 0.00 0.00 3.51
1057 2104 1.454847 CTCCTCCTCCTCCTCACCG 60.455 68.421 0.00 0.00 0.00 4.94
1060 2107 1.304952 CTCCTCCTCCTCACCGTCT 59.695 63.158 0.00 0.00 0.00 4.18
1061 2108 0.750182 CTCCTCCTCCTCACCGTCTC 60.750 65.000 0.00 0.00 0.00 3.36
1064 2111 2.361357 CCTCCTCACCGTCTCCGT 60.361 66.667 0.00 0.00 0.00 4.69
1065 2112 2.408241 CCTCCTCACCGTCTCCGTC 61.408 68.421 0.00 0.00 0.00 4.79
1066 2113 2.745100 TCCTCACCGTCTCCGTCG 60.745 66.667 0.00 0.00 0.00 5.12
1149 2196 4.796231 CTCGTGCTCCCGTTCCCG 62.796 72.222 0.00 0.00 0.00 5.14
1200 2247 1.446516 CCGCGGATGGCAATTCATCA 61.447 55.000 24.07 0.00 43.82 3.07
1203 2250 1.884579 GCGGATGGCAATTCATCATCT 59.115 47.619 8.82 0.00 43.82 2.90
1254 2301 1.861542 GCCACAATGCCACGCTTACA 61.862 55.000 0.00 0.00 0.00 2.41
1696 2746 3.924013 ATCGAGGTGGAGTGGGCCA 62.924 63.158 0.00 0.00 35.02 5.36
1752 2802 2.659610 GCCAGGCTCGTGAACTCT 59.340 61.111 3.29 0.00 0.00 3.24
1926 2976 2.048503 CTCGCCGGGTTCTTCGTT 60.049 61.111 2.18 0.00 0.00 3.85
2531 3584 4.477975 CCTCGACGCCGACCTCAC 62.478 72.222 0.00 0.00 40.30 3.51
2610 3666 0.969409 ACCACCACTACTACGGCTCC 60.969 60.000 0.00 0.00 0.00 4.70
2616 3672 0.251354 ACTACTACGGCTCCTCGTCA 59.749 55.000 0.00 0.00 42.82 4.35
2619 3675 1.102222 ACTACGGCTCCTCGTCATCC 61.102 60.000 0.00 0.00 42.82 3.51
2688 3744 1.882167 GCTGATCGAGCTGCTGACC 60.882 63.158 23.06 0.00 45.21 4.02
2929 3985 1.520342 GAGCTGATGCACCTCGTCC 60.520 63.158 0.00 0.00 42.74 4.79
2930 3986 2.230994 GAGCTGATGCACCTCGTCCA 62.231 60.000 0.00 0.00 42.74 4.02
2931 3987 1.812922 GCTGATGCACCTCGTCCAG 60.813 63.158 0.00 0.00 39.41 3.86
2932 3988 1.893062 CTGATGCACCTCGTCCAGA 59.107 57.895 0.00 0.00 0.00 3.86
2933 3989 0.463204 CTGATGCACCTCGTCCAGAT 59.537 55.000 0.00 0.00 0.00 2.90
2934 3990 0.176449 TGATGCACCTCGTCCAGATG 59.824 55.000 0.00 0.00 0.00 2.90
2935 3991 0.531532 GATGCACCTCGTCCAGATGG 60.532 60.000 0.00 0.00 0.00 3.51
2936 3992 1.267574 ATGCACCTCGTCCAGATGGT 61.268 55.000 0.00 0.00 36.34 3.55
2951 4007 0.332632 ATGGTGGACAACATGGGGAG 59.667 55.000 1.37 0.00 37.35 4.30
2952 4008 1.678970 GGTGGACAACATGGGGAGC 60.679 63.158 0.00 0.00 0.00 4.70
2953 4009 1.074775 GTGGACAACATGGGGAGCA 59.925 57.895 0.00 0.00 0.00 4.26
3056 4112 4.047125 CCACCGCCACCTCCCATT 62.047 66.667 0.00 0.00 0.00 3.16
3065 4125 2.028930 GCCACCTCCCATTATAGACGAG 60.029 54.545 0.00 0.00 0.00 4.18
3099 4163 2.353605 CCGTATGCAAATGGGCTTGTTT 60.354 45.455 0.00 0.00 34.04 2.83
3137 4205 2.097110 AGCCCGTCTGTATATTCCCA 57.903 50.000 0.00 0.00 0.00 4.37
3225 4293 2.740981 CTCTGCTCACAAGAATTTCGCT 59.259 45.455 0.00 0.00 0.00 4.93
3227 4295 2.481568 CTGCTCACAAGAATTTCGCTGA 59.518 45.455 8.09 2.42 0.00 4.26
3284 4354 5.894298 TGTCATGATAGTAAGGGCATCTT 57.106 39.130 0.00 0.00 39.40 2.40
3289 4359 1.491668 TAGTAAGGGCATCTTCGGCA 58.508 50.000 0.00 0.00 36.93 5.69
3297 4367 2.044946 ATCTTCGGCAGCAACCCC 60.045 61.111 0.00 0.00 0.00 4.95
3299 4369 2.826777 ATCTTCGGCAGCAACCCCTG 62.827 60.000 0.00 0.00 35.93 4.45
3312 4382 1.657804 ACCCCTGAATTTCCTCTCGT 58.342 50.000 0.00 0.00 0.00 4.18
3446 4539 0.525761 AACACGGCCGATTTCATTGG 59.474 50.000 35.90 11.14 36.85 3.16
3458 4551 6.293462 GCCGATTTCATTGGAAGTAGGATAAC 60.293 42.308 3.88 0.00 37.60 1.89
3508 4602 7.969508 TCGTTTGGTGAACTAAAAACCTAAAAG 59.030 33.333 0.00 0.00 36.06 2.27
3526 4624 9.777297 ACCTAAAAGTAAAACCGTAAACTATCA 57.223 29.630 0.00 0.00 0.00 2.15
3537 4635 7.828508 ACCGTAAACTATCATATACTCCACA 57.171 36.000 0.00 0.00 0.00 4.17
3700 4834 1.458588 ATCCTCTCCGCCTCTTCCC 60.459 63.158 0.00 0.00 0.00 3.97
3781 4927 2.434185 TGAGGCGTCGTCATTGGC 60.434 61.111 0.00 0.00 0.00 4.52
3782 4928 2.434185 GAGGCGTCGTCATTGGCA 60.434 61.111 0.00 0.00 0.00 4.92
3874 5020 2.017049 ACGCTTGGATGGCTTCATAAC 58.983 47.619 2.60 0.00 0.00 1.89
3885 5031 2.103263 GGCTTCATAACATCGAGGAGGT 59.897 50.000 3.06 0.00 0.00 3.85
3908 5054 5.118203 GTGGCGGAGATGACGTAATAATAAC 59.882 44.000 0.00 0.00 0.00 1.89
3938 5084 8.056571 GCAGTCGTTATTATTACATCACTGAAC 58.943 37.037 8.38 0.00 32.18 3.18
3964 5110 6.456795 TCTCGTCTCATTCTCACACATAAT 57.543 37.500 0.00 0.00 0.00 1.28
3965 5111 6.867550 TCTCGTCTCATTCTCACACATAATT 58.132 36.000 0.00 0.00 0.00 1.40
4000 5146 9.051027 GTTGATGTAATTTTCGTGTTCATACAG 57.949 33.333 0.00 0.00 34.24 2.74
4010 5156 3.581755 GTGTTCATACAGTGTTCGGCTA 58.418 45.455 0.00 0.00 34.24 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.944676 CACCGTATTCTCCTCGCGC 60.945 63.158 0.00 0.00 0.00 6.86
1 2 1.299165 CCACCGTATTCTCCTCGCG 60.299 63.158 0.00 0.00 0.00 5.87
2 3 1.591863 GCCACCGTATTCTCCTCGC 60.592 63.158 0.00 0.00 0.00 5.03
3 4 1.067582 GGCCACCGTATTCTCCTCG 59.932 63.158 0.00 0.00 0.00 4.63
4 5 1.049289 AGGGCCACCGTATTCTCCTC 61.049 60.000 6.18 0.00 43.47 3.71
5 6 0.263765 TAGGGCCACCGTATTCTCCT 59.736 55.000 6.18 0.00 43.47 3.69
6 7 0.680061 CTAGGGCCACCGTATTCTCC 59.320 60.000 6.18 0.00 43.47 3.71
7 8 1.068741 CACTAGGGCCACCGTATTCTC 59.931 57.143 6.18 0.00 43.47 2.87
20 21 0.914417 TCCCCAAGAAGCCACTAGGG 60.914 60.000 0.00 8.55 40.85 3.53
21 22 0.543749 CTCCCCAAGAAGCCACTAGG 59.456 60.000 0.00 0.00 38.23 3.02
22 23 0.107459 GCTCCCCAAGAAGCCACTAG 60.107 60.000 0.00 0.00 0.00 2.57
23 24 0.840288 TGCTCCCCAAGAAGCCACTA 60.840 55.000 0.00 0.00 0.00 2.74
24 25 1.504275 ATGCTCCCCAAGAAGCCACT 61.504 55.000 0.00 0.00 0.00 4.00
25 26 0.613012 AATGCTCCCCAAGAAGCCAC 60.613 55.000 0.00 0.00 0.00 5.01
26 27 0.612732 CAATGCTCCCCAAGAAGCCA 60.613 55.000 0.00 0.00 0.00 4.75
27 28 0.613012 ACAATGCTCCCCAAGAAGCC 60.613 55.000 0.00 0.00 0.00 4.35
28 29 0.529378 CACAATGCTCCCCAAGAAGC 59.471 55.000 0.00 0.00 0.00 3.86
29 30 0.529378 GCACAATGCTCCCCAAGAAG 59.471 55.000 0.00 0.00 40.96 2.85
30 31 1.243342 CGCACAATGCTCCCCAAGAA 61.243 55.000 0.00 0.00 42.25 2.52
31 32 1.675310 CGCACAATGCTCCCCAAGA 60.675 57.895 0.00 0.00 42.25 3.02
32 33 1.926511 GACGCACAATGCTCCCCAAG 61.927 60.000 0.00 0.00 42.25 3.61
33 34 1.971167 GACGCACAATGCTCCCCAA 60.971 57.895 0.00 0.00 42.25 4.12
34 35 2.359850 GACGCACAATGCTCCCCA 60.360 61.111 0.00 0.00 42.25 4.96
35 36 3.134127 GGACGCACAATGCTCCCC 61.134 66.667 0.00 0.00 42.25 4.81
36 37 2.359850 TGGACGCACAATGCTCCC 60.360 61.111 13.32 8.39 42.25 4.30
37 38 1.965930 TGTGGACGCACAATGCTCC 60.966 57.895 10.54 10.54 42.25 4.70
38 39 1.207593 GTGTGGACGCACAATGCTC 59.792 57.895 10.84 0.00 42.25 4.26
39 40 2.260869 GGTGTGGACGCACAATGCT 61.261 57.895 16.71 0.00 42.25 3.79
40 41 2.255252 GGTGTGGACGCACAATGC 59.745 61.111 16.71 0.00 40.89 3.56
41 42 2.555782 CGGTGTGGACGCACAATG 59.444 61.111 16.71 3.59 40.89 2.82
48 49 3.041940 GTTGGAGCGGTGTGGACG 61.042 66.667 0.00 0.00 0.00 4.79
49 50 3.041940 CGTTGGAGCGGTGTGGAC 61.042 66.667 0.00 0.00 0.00 4.02
50 51 4.308458 CCGTTGGAGCGGTGTGGA 62.308 66.667 0.00 0.00 46.11 4.02
65 66 0.679002 TGAGGGGAAGTACGTCTCCG 60.679 60.000 20.30 0.00 43.68 4.63
66 67 1.553706 TTGAGGGGAAGTACGTCTCC 58.446 55.000 19.09 19.09 38.61 3.71
67 68 3.586892 CTTTTGAGGGGAAGTACGTCTC 58.413 50.000 8.73 4.32 0.00 3.36
68 69 2.302157 CCTTTTGAGGGGAAGTACGTCT 59.698 50.000 8.73 0.00 0.00 4.18
69 70 2.301009 TCCTTTTGAGGGGAAGTACGTC 59.699 50.000 0.00 0.00 0.00 4.34
70 71 2.332117 TCCTTTTGAGGGGAAGTACGT 58.668 47.619 0.00 0.00 0.00 3.57
71 72 3.412237 TTCCTTTTGAGGGGAAGTACG 57.588 47.619 0.00 0.00 36.78 3.67
76 77 2.789399 AGTTCCTTCCTTTTGAGGGGAA 59.211 45.455 0.00 0.00 40.60 3.97
77 78 2.428901 AGTTCCTTCCTTTTGAGGGGA 58.571 47.619 0.00 0.00 40.60 4.81
78 79 2.980246 AGTTCCTTCCTTTTGAGGGG 57.020 50.000 0.00 0.00 40.60 4.79
79 80 2.814336 CGAAGTTCCTTCCTTTTGAGGG 59.186 50.000 0.00 0.00 41.57 4.30
80 81 2.814336 CCGAAGTTCCTTCCTTTTGAGG 59.186 50.000 0.00 0.00 37.20 3.86
81 82 3.477530 ACCGAAGTTCCTTCCTTTTGAG 58.522 45.455 0.00 0.00 37.20 3.02
82 83 3.570912 ACCGAAGTTCCTTCCTTTTGA 57.429 42.857 0.00 0.00 37.20 2.69
83 84 4.577283 TGTTACCGAAGTTCCTTCCTTTTG 59.423 41.667 0.00 0.00 37.20 2.44
84 85 4.577693 GTGTTACCGAAGTTCCTTCCTTTT 59.422 41.667 0.00 0.00 37.20 2.27
85 86 4.132336 GTGTTACCGAAGTTCCTTCCTTT 58.868 43.478 0.00 0.00 37.20 3.11
86 87 3.135167 TGTGTTACCGAAGTTCCTTCCTT 59.865 43.478 0.00 0.00 37.20 3.36
87 88 2.701951 TGTGTTACCGAAGTTCCTTCCT 59.298 45.455 0.00 0.00 37.20 3.36
88 89 3.116079 TGTGTTACCGAAGTTCCTTCC 57.884 47.619 0.00 0.00 37.20 3.46
89 90 3.683340 GGATGTGTTACCGAAGTTCCTTC 59.317 47.826 0.00 0.00 37.16 3.46
90 91 3.326880 AGGATGTGTTACCGAAGTTCCTT 59.673 43.478 0.00 0.00 0.00 3.36
91 92 2.904434 AGGATGTGTTACCGAAGTTCCT 59.096 45.455 0.00 0.00 0.00 3.36
92 93 3.259902 GAGGATGTGTTACCGAAGTTCC 58.740 50.000 0.00 0.00 0.00 3.62
93 94 2.921754 CGAGGATGTGTTACCGAAGTTC 59.078 50.000 0.00 0.00 0.00 3.01
94 95 2.298163 ACGAGGATGTGTTACCGAAGTT 59.702 45.455 0.00 0.00 0.00 2.66
95 96 1.891150 ACGAGGATGTGTTACCGAAGT 59.109 47.619 0.00 0.00 0.00 3.01
96 97 2.163815 AGACGAGGATGTGTTACCGAAG 59.836 50.000 0.00 0.00 0.00 3.79
97 98 2.165167 AGACGAGGATGTGTTACCGAA 58.835 47.619 0.00 0.00 0.00 4.30
98 99 1.830279 AGACGAGGATGTGTTACCGA 58.170 50.000 0.00 0.00 0.00 4.69
99 100 2.094906 TGAAGACGAGGATGTGTTACCG 60.095 50.000 0.00 0.00 0.00 4.02
100 101 3.251571 GTGAAGACGAGGATGTGTTACC 58.748 50.000 0.00 0.00 0.00 2.85
101 102 3.251571 GGTGAAGACGAGGATGTGTTAC 58.748 50.000 0.00 0.00 0.00 2.50
102 103 2.094906 CGGTGAAGACGAGGATGTGTTA 60.095 50.000 0.00 0.00 0.00 2.41
103 104 1.336887 CGGTGAAGACGAGGATGTGTT 60.337 52.381 0.00 0.00 0.00 3.32
104 105 0.243907 CGGTGAAGACGAGGATGTGT 59.756 55.000 0.00 0.00 0.00 3.72
105 106 0.458543 CCGGTGAAGACGAGGATGTG 60.459 60.000 0.00 0.00 0.00 3.21
106 107 1.890894 CCGGTGAAGACGAGGATGT 59.109 57.895 0.00 0.00 0.00 3.06
107 108 1.519455 GCCGGTGAAGACGAGGATG 60.519 63.158 1.90 0.00 0.00 3.51
108 109 1.668101 GAGCCGGTGAAGACGAGGAT 61.668 60.000 1.90 0.00 0.00 3.24
109 110 2.282958 AGCCGGTGAAGACGAGGA 60.283 61.111 1.90 0.00 0.00 3.71
110 111 2.182030 GAGCCGGTGAAGACGAGG 59.818 66.667 1.90 0.00 0.00 4.63
111 112 2.182030 GGAGCCGGTGAAGACGAG 59.818 66.667 1.90 0.00 0.00 4.18
112 113 2.599281 TGGAGCCGGTGAAGACGA 60.599 61.111 1.90 0.00 0.00 4.20
113 114 2.432628 GTGGAGCCGGTGAAGACG 60.433 66.667 1.90 0.00 0.00 4.18
114 115 1.079750 GAGTGGAGCCGGTGAAGAC 60.080 63.158 1.90 0.00 0.00 3.01
115 116 0.832135 AAGAGTGGAGCCGGTGAAGA 60.832 55.000 1.90 0.00 0.00 2.87
116 117 0.671781 CAAGAGTGGAGCCGGTGAAG 60.672 60.000 1.90 0.00 0.00 3.02
117 118 1.371183 CAAGAGTGGAGCCGGTGAA 59.629 57.895 1.90 0.00 0.00 3.18
118 119 3.059982 CAAGAGTGGAGCCGGTGA 58.940 61.111 1.90 0.00 0.00 4.02
128 129 2.761208 AGGGACGAGATAACCAAGAGTG 59.239 50.000 0.00 0.00 0.00 3.51
129 130 3.103080 AGGGACGAGATAACCAAGAGT 57.897 47.619 0.00 0.00 0.00 3.24
130 131 4.473477 AAAGGGACGAGATAACCAAGAG 57.527 45.455 0.00 0.00 0.00 2.85
131 132 5.021458 AGTAAAGGGACGAGATAACCAAGA 58.979 41.667 0.00 0.00 0.00 3.02
132 133 5.340439 AGTAAAGGGACGAGATAACCAAG 57.660 43.478 0.00 0.00 0.00 3.61
133 134 5.750352 AAGTAAAGGGACGAGATAACCAA 57.250 39.130 0.00 0.00 0.00 3.67
134 135 5.622914 CGAAAGTAAAGGGACGAGATAACCA 60.623 44.000 0.00 0.00 0.00 3.67
135 136 4.802563 CGAAAGTAAAGGGACGAGATAACC 59.197 45.833 0.00 0.00 0.00 2.85
136 137 4.267214 GCGAAAGTAAAGGGACGAGATAAC 59.733 45.833 0.00 0.00 0.00 1.89
137 138 4.082081 TGCGAAAGTAAAGGGACGAGATAA 60.082 41.667 0.00 0.00 0.00 1.75
138 139 3.444742 TGCGAAAGTAAAGGGACGAGATA 59.555 43.478 0.00 0.00 0.00 1.98
139 140 2.232941 TGCGAAAGTAAAGGGACGAGAT 59.767 45.455 0.00 0.00 0.00 2.75
140 141 1.614903 TGCGAAAGTAAAGGGACGAGA 59.385 47.619 0.00 0.00 0.00 4.04
141 142 2.074547 TGCGAAAGTAAAGGGACGAG 57.925 50.000 0.00 0.00 0.00 4.18
142 143 2.409975 CTTGCGAAAGTAAAGGGACGA 58.590 47.619 0.00 0.00 34.61 4.20
143 144 1.136057 GCTTGCGAAAGTAAAGGGACG 60.136 52.381 4.74 0.00 34.61 4.79
144 145 2.152016 AGCTTGCGAAAGTAAAGGGAC 58.848 47.619 4.74 0.00 34.61 4.46
145 146 2.561478 AGCTTGCGAAAGTAAAGGGA 57.439 45.000 4.74 0.00 34.61 4.20
146 147 3.751698 AGTAAGCTTGCGAAAGTAAAGGG 59.248 43.478 9.86 0.00 34.61 3.95
147 148 5.147162 CAAGTAAGCTTGCGAAAGTAAAGG 58.853 41.667 9.86 0.00 44.54 3.11
160 161 6.516693 GCAAGGGATTTAACACAAGTAAGCTT 60.517 38.462 3.48 3.48 34.82 3.74
161 162 5.048013 GCAAGGGATTTAACACAAGTAAGCT 60.048 40.000 0.00 0.00 0.00 3.74
162 163 5.048013 AGCAAGGGATTTAACACAAGTAAGC 60.048 40.000 0.00 0.00 0.00 3.09
163 164 6.575162 AGCAAGGGATTTAACACAAGTAAG 57.425 37.500 0.00 0.00 0.00 2.34
164 165 6.737346 GCAAGCAAGGGATTTAACACAAGTAA 60.737 38.462 0.00 0.00 0.00 2.24
165 166 5.278758 GCAAGCAAGGGATTTAACACAAGTA 60.279 40.000 0.00 0.00 0.00 2.24
166 167 4.501400 GCAAGCAAGGGATTTAACACAAGT 60.501 41.667 0.00 0.00 0.00 3.16
167 168 3.989817 GCAAGCAAGGGATTTAACACAAG 59.010 43.478 0.00 0.00 0.00 3.16
168 169 3.640967 AGCAAGCAAGGGATTTAACACAA 59.359 39.130 0.00 0.00 0.00 3.33
169 170 3.230134 AGCAAGCAAGGGATTTAACACA 58.770 40.909 0.00 0.00 0.00 3.72
170 171 3.942130 AGCAAGCAAGGGATTTAACAC 57.058 42.857 0.00 0.00 0.00 3.32
171 172 3.640967 ACAAGCAAGCAAGGGATTTAACA 59.359 39.130 0.00 0.00 0.00 2.41
172 173 3.989817 CACAAGCAAGCAAGGGATTTAAC 59.010 43.478 0.00 0.00 0.00 2.01
173 174 3.640967 ACACAAGCAAGCAAGGGATTTAA 59.359 39.130 0.00 0.00 0.00 1.52
174 175 3.005684 CACACAAGCAAGCAAGGGATTTA 59.994 43.478 0.00 0.00 0.00 1.40
175 176 2.041701 ACACAAGCAAGCAAGGGATTT 58.958 42.857 0.00 0.00 0.00 2.17
176 177 1.342174 CACACAAGCAAGCAAGGGATT 59.658 47.619 0.00 0.00 0.00 3.01
177 178 0.963962 CACACAAGCAAGCAAGGGAT 59.036 50.000 0.00 0.00 0.00 3.85
178 179 1.737355 GCACACAAGCAAGCAAGGGA 61.737 55.000 0.00 0.00 0.00 4.20
179 180 1.300388 GCACACAAGCAAGCAAGGG 60.300 57.895 0.00 0.00 0.00 3.95
180 181 0.103572 AAGCACACAAGCAAGCAAGG 59.896 50.000 0.00 0.00 36.85 3.61
181 182 1.205657 CAAGCACACAAGCAAGCAAG 58.794 50.000 0.00 0.00 36.85 4.01
182 183 0.531657 ACAAGCACACAAGCAAGCAA 59.468 45.000 0.00 0.00 36.85 3.91
183 184 0.531657 AACAAGCACACAAGCAAGCA 59.468 45.000 0.00 0.00 36.85 3.91
184 185 0.925466 CAACAAGCACACAAGCAAGC 59.075 50.000 0.00 0.00 36.85 4.01
185 186 2.187707 GACAACAAGCACACAAGCAAG 58.812 47.619 0.00 0.00 36.85 4.01
186 187 1.543358 TGACAACAAGCACACAAGCAA 59.457 42.857 0.00 0.00 36.85 3.91
187 188 1.172175 TGACAACAAGCACACAAGCA 58.828 45.000 0.00 0.00 36.85 3.91
188 189 2.497107 ATGACAACAAGCACACAAGC 57.503 45.000 0.00 0.00 0.00 4.01
189 190 2.536803 GCAATGACAACAAGCACACAAG 59.463 45.455 0.00 0.00 33.46 3.16
190 191 2.094338 TGCAATGACAACAAGCACACAA 60.094 40.909 0.00 0.00 36.64 3.33
191 192 1.475682 TGCAATGACAACAAGCACACA 59.524 42.857 0.00 0.00 36.64 3.72
192 193 2.206815 TGCAATGACAACAAGCACAC 57.793 45.000 0.00 0.00 36.64 3.82
193 194 2.361438 TGATGCAATGACAACAAGCACA 59.639 40.909 0.00 0.00 41.33 4.57
194 195 3.015934 TGATGCAATGACAACAAGCAC 57.984 42.857 0.00 0.00 41.33 4.40
195 196 3.945981 ATGATGCAATGACAACAAGCA 57.054 38.095 0.00 0.00 42.17 3.91
196 197 6.147581 CCTATATGATGCAATGACAACAAGC 58.852 40.000 0.00 0.00 0.00 4.01
197 198 7.268199 ACCTATATGATGCAATGACAACAAG 57.732 36.000 0.00 0.00 0.00 3.16
198 199 7.482474 CAACCTATATGATGCAATGACAACAA 58.518 34.615 0.00 0.00 0.00 2.83
199 200 6.459985 GCAACCTATATGATGCAATGACAACA 60.460 38.462 5.57 0.00 38.63 3.33
200 201 5.916883 GCAACCTATATGATGCAATGACAAC 59.083 40.000 5.57 0.00 38.63 3.32
201 202 5.829391 AGCAACCTATATGATGCAATGACAA 59.171 36.000 11.71 0.00 41.18 3.18
202 203 5.379187 AGCAACCTATATGATGCAATGACA 58.621 37.500 11.71 0.00 41.18 3.58
203 204 5.471116 TGAGCAACCTATATGATGCAATGAC 59.529 40.000 11.71 1.09 41.18 3.06
204 205 5.471116 GTGAGCAACCTATATGATGCAATGA 59.529 40.000 11.71 0.00 41.18 2.57
205 206 5.472478 AGTGAGCAACCTATATGATGCAATG 59.528 40.000 11.71 0.00 41.18 2.82
206 207 5.628130 AGTGAGCAACCTATATGATGCAAT 58.372 37.500 11.71 0.00 41.18 3.56
207 208 5.039920 AGTGAGCAACCTATATGATGCAA 57.960 39.130 11.71 0.00 41.18 4.08
208 209 4.694760 AGTGAGCAACCTATATGATGCA 57.305 40.909 11.71 0.00 41.18 3.96
209 210 6.226787 ACTAAGTGAGCAACCTATATGATGC 58.773 40.000 2.62 2.62 39.06 3.91
210 211 7.307632 GCAACTAAGTGAGCAACCTATATGATG 60.308 40.741 0.00 0.00 0.00 3.07
211 212 6.708054 GCAACTAAGTGAGCAACCTATATGAT 59.292 38.462 0.00 0.00 0.00 2.45
212 213 6.049149 GCAACTAAGTGAGCAACCTATATGA 58.951 40.000 0.00 0.00 0.00 2.15
213 214 5.817296 TGCAACTAAGTGAGCAACCTATATG 59.183 40.000 0.00 0.00 33.48 1.78
214 215 5.989477 TGCAACTAAGTGAGCAACCTATAT 58.011 37.500 0.00 0.00 33.48 0.86
215 216 5.414789 TGCAACTAAGTGAGCAACCTATA 57.585 39.130 0.00 0.00 33.48 1.31
216 217 4.286297 TGCAACTAAGTGAGCAACCTAT 57.714 40.909 0.00 0.00 33.48 2.57
217 218 3.762407 TGCAACTAAGTGAGCAACCTA 57.238 42.857 0.00 0.00 33.48 3.08
218 219 2.638480 TGCAACTAAGTGAGCAACCT 57.362 45.000 0.00 0.00 33.48 3.50
219 220 4.878397 AGATATGCAACTAAGTGAGCAACC 59.122 41.667 0.00 0.00 40.76 3.77
220 221 6.980978 TCTAGATATGCAACTAAGTGAGCAAC 59.019 38.462 0.00 0.00 40.76 4.17
221 222 6.980978 GTCTAGATATGCAACTAAGTGAGCAA 59.019 38.462 0.00 0.00 40.76 3.91
222 223 6.096846 TGTCTAGATATGCAACTAAGTGAGCA 59.903 38.462 0.00 0.00 41.73 4.26
223 224 6.507900 TGTCTAGATATGCAACTAAGTGAGC 58.492 40.000 0.00 0.00 0.00 4.26
224 225 7.436673 GGTTGTCTAGATATGCAACTAAGTGAG 59.563 40.741 18.23 0.00 40.49 3.51
225 226 7.124298 AGGTTGTCTAGATATGCAACTAAGTGA 59.876 37.037 18.23 0.00 40.49 3.41
226 227 7.268586 AGGTTGTCTAGATATGCAACTAAGTG 58.731 38.462 18.23 0.00 40.49 3.16
227 228 7.425224 AGGTTGTCTAGATATGCAACTAAGT 57.575 36.000 18.23 4.46 40.49 2.24
228 229 8.634444 AGTAGGTTGTCTAGATATGCAACTAAG 58.366 37.037 18.23 0.00 40.49 2.18
229 230 8.534954 AGTAGGTTGTCTAGATATGCAACTAA 57.465 34.615 18.23 8.39 40.49 2.24
230 231 8.534954 AAGTAGGTTGTCTAGATATGCAACTA 57.465 34.615 18.23 9.66 40.49 2.24
231 232 7.425224 AAGTAGGTTGTCTAGATATGCAACT 57.575 36.000 18.23 7.55 40.49 3.16
232 233 7.764443 TCAAAGTAGGTTGTCTAGATATGCAAC 59.236 37.037 13.07 13.07 40.08 4.17
233 234 7.847096 TCAAAGTAGGTTGTCTAGATATGCAA 58.153 34.615 0.00 0.00 0.00 4.08
234 235 7.418337 TCAAAGTAGGTTGTCTAGATATGCA 57.582 36.000 0.00 0.00 0.00 3.96
235 236 7.095439 GCATCAAAGTAGGTTGTCTAGATATGC 60.095 40.741 0.00 0.00 0.00 3.14
236 237 7.928167 TGCATCAAAGTAGGTTGTCTAGATATG 59.072 37.037 0.00 0.00 0.00 1.78
237 238 8.023021 TGCATCAAAGTAGGTTGTCTAGATAT 57.977 34.615 0.00 0.00 0.00 1.63
238 239 7.418337 TGCATCAAAGTAGGTTGTCTAGATA 57.582 36.000 0.00 0.00 0.00 1.98
239 240 6.299805 TGCATCAAAGTAGGTTGTCTAGAT 57.700 37.500 0.00 0.00 0.00 1.98
240 241 5.738619 TGCATCAAAGTAGGTTGTCTAGA 57.261 39.130 0.00 0.00 0.00 2.43
241 242 6.801539 TTTGCATCAAAGTAGGTTGTCTAG 57.198 37.500 0.00 0.00 0.00 2.43
242 243 6.801539 CTTTGCATCAAAGTAGGTTGTCTA 57.198 37.500 10.28 0.00 43.85 2.59
243 244 5.695851 CTTTGCATCAAAGTAGGTTGTCT 57.304 39.130 10.28 0.00 43.85 3.41
278 279 8.826710 GGCAACTAACAATTTTTAGCTTTTCTT 58.173 29.630 10.61 0.00 33.02 2.52
279 280 8.365399 GGCAACTAACAATTTTTAGCTTTTCT 57.635 30.769 10.61 0.00 33.02 2.52
299 300 1.777272 AGAGGGGGATGAATAGGCAAC 59.223 52.381 0.00 0.00 0.00 4.17
300 301 2.212752 AGAGGGGGATGAATAGGCAA 57.787 50.000 0.00 0.00 0.00 4.52
301 302 2.182312 ACTAGAGGGGGATGAATAGGCA 59.818 50.000 0.00 0.00 0.00 4.75
302 303 2.835156 GACTAGAGGGGGATGAATAGGC 59.165 54.545 0.00 0.00 0.00 3.93
303 304 4.133526 TGACTAGAGGGGGATGAATAGG 57.866 50.000 0.00 0.00 0.00 2.57
304 305 5.151454 AGTTGACTAGAGGGGGATGAATAG 58.849 45.833 0.00 0.00 0.00 1.73
305 306 5.157770 AGTTGACTAGAGGGGGATGAATA 57.842 43.478 0.00 0.00 0.00 1.75
306 307 4.014273 AGTTGACTAGAGGGGGATGAAT 57.986 45.455 0.00 0.00 0.00 2.57
307 308 3.491766 AGTTGACTAGAGGGGGATGAA 57.508 47.619 0.00 0.00 0.00 2.57
308 309 4.834406 ATAGTTGACTAGAGGGGGATGA 57.166 45.455 0.00 0.00 0.00 2.92
309 310 5.358442 CGATATAGTTGACTAGAGGGGGATG 59.642 48.000 0.00 0.00 0.00 3.51
310 311 5.253330 TCGATATAGTTGACTAGAGGGGGAT 59.747 44.000 0.00 0.00 0.00 3.85
311 312 4.600547 TCGATATAGTTGACTAGAGGGGGA 59.399 45.833 0.00 0.00 0.00 4.81
312 313 4.919793 TCGATATAGTTGACTAGAGGGGG 58.080 47.826 0.00 0.00 0.00 5.40
313 314 5.591067 GGATCGATATAGTTGACTAGAGGGG 59.409 48.000 0.00 0.00 0.00 4.79
314 315 6.419791 AGGATCGATATAGTTGACTAGAGGG 58.580 44.000 0.00 0.00 0.00 4.30
315 316 7.931578 AAGGATCGATATAGTTGACTAGAGG 57.068 40.000 0.00 0.00 0.00 3.69
316 317 9.004717 TGAAAGGATCGATATAGTTGACTAGAG 57.995 37.037 0.00 0.00 0.00 2.43
317 318 8.919777 TGAAAGGATCGATATAGTTGACTAGA 57.080 34.615 0.00 0.00 0.00 2.43
318 319 7.753132 GCTGAAAGGATCGATATAGTTGACTAG 59.247 40.741 0.00 0.00 0.00 2.57
319 320 7.230712 TGCTGAAAGGATCGATATAGTTGACTA 59.769 37.037 0.00 0.00 0.00 2.59
320 321 6.040955 TGCTGAAAGGATCGATATAGTTGACT 59.959 38.462 0.00 0.00 0.00 3.41
321 322 6.216569 TGCTGAAAGGATCGATATAGTTGAC 58.783 40.000 0.00 0.00 0.00 3.18
322 323 6.265422 TCTGCTGAAAGGATCGATATAGTTGA 59.735 38.462 0.00 0.00 29.63 3.18
323 324 6.450545 TCTGCTGAAAGGATCGATATAGTTG 58.549 40.000 0.00 0.00 29.63 3.16
324 325 6.656632 TCTGCTGAAAGGATCGATATAGTT 57.343 37.500 0.00 0.00 29.63 2.24
325 326 6.656632 TTCTGCTGAAAGGATCGATATAGT 57.343 37.500 0.00 0.00 29.63 2.12
326 327 8.034215 AGATTTCTGCTGAAAGGATCGATATAG 58.966 37.037 21.19 0.00 44.25 1.31
327 328 7.901029 AGATTTCTGCTGAAAGGATCGATATA 58.099 34.615 21.19 0.00 44.25 0.86
328 329 6.767456 AGATTTCTGCTGAAAGGATCGATAT 58.233 36.000 21.19 4.24 44.25 1.63
329 330 6.166984 AGATTTCTGCTGAAAGGATCGATA 57.833 37.500 21.19 0.00 44.25 2.92
330 331 5.033589 AGATTTCTGCTGAAAGGATCGAT 57.966 39.130 21.19 0.00 44.25 3.59
331 332 4.478206 AGATTTCTGCTGAAAGGATCGA 57.522 40.909 21.19 0.00 44.25 3.59
332 333 5.353678 AGAAAGATTTCTGCTGAAAGGATCG 59.646 40.000 21.19 0.00 45.27 3.69
333 334 6.756299 AGAAAGATTTCTGCTGAAAGGATC 57.244 37.500 21.19 14.83 45.27 3.36
334 335 6.571925 GCAAGAAAGATTTCTGCTGAAAGGAT 60.572 38.462 21.19 7.50 46.22 3.24
335 336 5.278660 GCAAGAAAGATTTCTGCTGAAAGGA 60.279 40.000 21.19 2.18 46.22 3.36
336 337 4.922103 GCAAGAAAGATTTCTGCTGAAAGG 59.078 41.667 21.19 7.00 46.22 3.11
337 338 4.615961 CGCAAGAAAGATTTCTGCTGAAAG 59.384 41.667 21.19 8.56 46.22 2.62
338 339 4.275689 TCGCAAGAAAGATTTCTGCTGAAA 59.724 37.500 19.39 19.39 46.22 2.69
339 340 3.814842 TCGCAAGAAAGATTTCTGCTGAA 59.185 39.130 18.65 1.33 46.22 3.02
340 341 3.402110 TCGCAAGAAAGATTTCTGCTGA 58.598 40.909 18.65 15.77 46.22 4.26
341 342 3.818961 TCGCAAGAAAGATTTCTGCTG 57.181 42.857 18.65 12.25 46.22 4.41
360 361 8.694394 GTTTTCTTTTGCAACATCTAATCTGTC 58.306 33.333 0.00 0.00 0.00 3.51
362 363 8.482429 GTGTTTTCTTTTGCAACATCTAATCTG 58.518 33.333 0.00 0.00 33.15 2.90
368 369 4.869861 GTGGTGTTTTCTTTTGCAACATCT 59.130 37.500 0.00 0.00 33.43 2.90
516 517 0.888736 CAATGGCGTCCACCTTGTCA 60.889 55.000 0.50 0.00 35.80 3.58
541 542 4.592485 ACCTCTCTTCTGTACACAAGTG 57.408 45.455 10.23 8.34 0.00 3.16
543 544 4.039245 TCCAACCTCTCTTCTGTACACAAG 59.961 45.833 4.61 4.61 0.00 3.16
544 545 3.964688 TCCAACCTCTCTTCTGTACACAA 59.035 43.478 0.00 0.00 0.00 3.33
546 547 3.827302 TCTCCAACCTCTCTTCTGTACAC 59.173 47.826 0.00 0.00 0.00 2.90
547 548 4.114015 TCTCCAACCTCTCTTCTGTACA 57.886 45.455 0.00 0.00 0.00 2.90
548 549 4.767928 TCTTCTCCAACCTCTCTTCTGTAC 59.232 45.833 0.00 0.00 0.00 2.90
549 550 4.999310 TCTTCTCCAACCTCTCTTCTGTA 58.001 43.478 0.00 0.00 0.00 2.74
550 551 3.831911 CTCTTCTCCAACCTCTCTTCTGT 59.168 47.826 0.00 0.00 0.00 3.41
551 552 4.085733 TCTCTTCTCCAACCTCTCTTCTG 58.914 47.826 0.00 0.00 0.00 3.02
553 554 4.709397 TCATCTCTTCTCCAACCTCTCTTC 59.291 45.833 0.00 0.00 0.00 2.87
554 555 4.682563 TCATCTCTTCTCCAACCTCTCTT 58.317 43.478 0.00 0.00 0.00 2.85
579 581 0.743688 CCACACATCTCTCTCCCTCG 59.256 60.000 0.00 0.00 0.00 4.63
586 588 4.636206 GGTTTATTGGACCACACATCTCTC 59.364 45.833 0.00 0.00 37.14 3.20
640 644 0.314302 CAACCGGCGGATCTAGTAGG 59.686 60.000 35.78 2.47 0.00 3.18
641 645 1.267261 CTCAACCGGCGGATCTAGTAG 59.733 57.143 35.78 14.92 0.00 2.57
712 716 7.361542 CCCGAGGTATGTATACACATGTACTAC 60.362 44.444 7.96 4.96 45.17 2.73
713 717 6.656270 CCCGAGGTATGTATACACATGTACTA 59.344 42.308 7.96 0.00 45.17 1.82
764 1802 2.931325 GTTCACGTGCGGGTTGATTATA 59.069 45.455 11.67 0.00 0.00 0.98
939 1982 5.351465 TGAATTGCTTTGCTACTAGTAGTGC 59.649 40.000 26.76 23.50 35.65 4.40
1036 2083 0.686112 GTGAGGAGGAGGAGGAGGTG 60.686 65.000 0.00 0.00 0.00 4.00
1070 2117 2.892425 GTTCAGCGCCGGAGATGG 60.892 66.667 23.36 5.11 0.00 3.51
1071 2118 2.892425 GGTTCAGCGCCGGAGATG 60.892 66.667 18.02 18.02 0.00 2.90
1072 2119 2.954684 TTGGTTCAGCGCCGGAGAT 61.955 57.895 10.31 0.00 0.00 2.75
1149 2196 0.037232 CGGAGGAGTTGAGGTGGAAC 60.037 60.000 0.00 0.00 0.00 3.62
1185 2232 4.653868 AGAGAGATGATGAATTGCCATCC 58.346 43.478 5.04 0.00 41.60 3.51
1191 2238 5.682659 AGGTGGAAGAGAGATGATGAATTG 58.317 41.667 0.00 0.00 0.00 2.32
1194 2241 4.618635 AGAGGTGGAAGAGAGATGATGAA 58.381 43.478 0.00 0.00 0.00 2.57
1197 2244 3.207321 AGGAGAGGTGGAAGAGAGATGAT 59.793 47.826 0.00 0.00 0.00 2.45
1200 2247 2.954539 GCAGGAGAGGTGGAAGAGAGAT 60.955 54.545 0.00 0.00 0.00 2.75
1203 2250 0.967887 CGCAGGAGAGGTGGAAGAGA 60.968 60.000 0.00 0.00 0.00 3.10
1251 2298 3.755628 GCGCCGAGGGTGAGTGTA 61.756 66.667 0.00 0.00 34.74 2.90
1674 2724 2.105128 CACTCCACCTCGATCGCC 59.895 66.667 11.09 0.00 0.00 5.54
1746 2796 2.150837 GCGCACCGTCGTAGAGTTC 61.151 63.158 0.30 0.00 36.95 3.01
1782 2832 3.338126 GACGAGTCCGGACGTGCAT 62.338 63.158 28.26 11.24 42.74 3.96
1926 2976 1.372499 CGCGAGGAAGAACACCGAA 60.372 57.895 0.00 0.00 0.00 4.30
1953 3003 0.670854 GGAGGAACAGCCAGAACGAC 60.671 60.000 0.00 0.00 40.02 4.34
2610 3666 1.519455 GGCCGTTGAGGATGACGAG 60.519 63.158 0.00 0.00 45.00 4.18
2929 3985 1.466856 CCCATGTTGTCCACCATCTG 58.533 55.000 0.00 0.00 0.00 2.90
2930 3986 0.332632 CCCCATGTTGTCCACCATCT 59.667 55.000 0.00 0.00 0.00 2.90
2931 3987 0.331278 TCCCCATGTTGTCCACCATC 59.669 55.000 0.00 0.00 0.00 3.51
2932 3988 0.332632 CTCCCCATGTTGTCCACCAT 59.667 55.000 0.00 0.00 0.00 3.55
2933 3989 1.767036 CTCCCCATGTTGTCCACCA 59.233 57.895 0.00 0.00 0.00 4.17
2934 3990 1.678970 GCTCCCCATGTTGTCCACC 60.679 63.158 0.00 0.00 0.00 4.61
2935 3991 0.962356 CTGCTCCCCATGTTGTCCAC 60.962 60.000 0.00 0.00 0.00 4.02
2936 3992 1.379916 CTGCTCCCCATGTTGTCCA 59.620 57.895 0.00 0.00 0.00 4.02
2951 4007 2.037913 CTCGATCTTGCTGCTGCTGC 62.038 60.000 22.51 22.51 40.48 5.25
2952 4008 0.459759 TCTCGATCTTGCTGCTGCTG 60.460 55.000 17.00 9.59 40.48 4.41
2953 4009 0.464870 ATCTCGATCTTGCTGCTGCT 59.535 50.000 17.00 0.00 40.48 4.24
3054 4110 6.038825 GGATGATCATCGTCCTCGTCTATAAT 59.961 42.308 25.60 0.00 46.57 1.28
3056 4112 4.876679 GGATGATCATCGTCCTCGTCTATA 59.123 45.833 25.60 0.00 46.57 1.31
3065 4125 2.263077 GCATACGGATGATCATCGTCC 58.737 52.381 25.60 15.33 46.61 4.79
3099 4163 5.009710 CGGGCTTCACTCTACACTGAATATA 59.990 44.000 0.00 0.00 0.00 0.86
3137 4205 1.286880 GTGCGCACCAAATTCAGCT 59.713 52.632 30.12 0.00 0.00 4.24
3197 4265 0.954449 CTTGTGAGCAGAGTGCCCTG 60.954 60.000 0.00 0.00 46.52 4.45
3202 4270 3.666374 GCGAAATTCTTGTGAGCAGAGTG 60.666 47.826 0.00 0.00 0.00 3.51
3257 4327 8.609483 AGATGCCCTTACTATCATGACAATAAT 58.391 33.333 0.00 0.00 0.00 1.28
3284 4354 2.424842 AATTCAGGGGTTGCTGCCGA 62.425 55.000 0.00 0.00 0.00 5.54
3289 4359 1.713078 AGAGGAAATTCAGGGGTTGCT 59.287 47.619 0.00 0.00 0.00 3.91
3446 4539 9.028185 CGGTTTATGTACAAGTTATCCTACTTC 57.972 37.037 0.00 0.00 36.24 3.01
3458 4551 7.473027 AAATATCGTCCGGTTTATGTACAAG 57.527 36.000 0.00 0.00 0.00 3.16
3526 4624 3.899726 ACGAGGTCACTGTGGAGTATAT 58.100 45.455 8.11 0.00 0.00 0.86
3537 4635 1.204941 GGCATGACTTACGAGGTCACT 59.795 52.381 0.00 0.00 44.82 3.41
3608 4706 4.280019 ACAACCCCAAGCCCGACC 62.280 66.667 0.00 0.00 0.00 4.79
3746 4891 4.473520 CATGACCGCCGCCCTCTT 62.474 66.667 0.00 0.00 0.00 2.85
3761 4907 0.740868 CCAATGACGACGCCTCACAT 60.741 55.000 0.00 0.00 0.00 3.21
3874 5020 3.144120 CTCCGCCACCTCCTCGATG 62.144 68.421 0.00 0.00 0.00 3.84
3885 5031 5.224888 GTTATTATTACGTCATCTCCGCCA 58.775 41.667 0.00 0.00 0.00 5.69
3908 5054 6.839301 GTGATGTAATAATAACGACTGCAACG 59.161 38.462 10.65 10.65 0.00 4.10
3929 5075 4.855715 TGAGACGAGAAAGTTCAGTGAT 57.144 40.909 0.00 0.00 0.00 3.06
3938 5084 4.550422 TGTGTGAGAATGAGACGAGAAAG 58.450 43.478 0.00 0.00 0.00 2.62
3987 5133 2.668250 CCGAACACTGTATGAACACGA 58.332 47.619 0.00 0.00 0.00 4.35
3988 5134 1.126113 GCCGAACACTGTATGAACACG 59.874 52.381 0.00 0.00 0.00 4.49
4019 5165 7.508977 ACAAAATACAAGGGAAAATGGAGAGAA 59.491 33.333 0.00 0.00 0.00 2.87
4020 5166 7.010160 ACAAAATACAAGGGAAAATGGAGAGA 58.990 34.615 0.00 0.00 0.00 3.10
4021 5167 7.232118 ACAAAATACAAGGGAAAATGGAGAG 57.768 36.000 0.00 0.00 0.00 3.20
4028 5174 9.508642 ACAAAAAGAACAAAATACAAGGGAAAA 57.491 25.926 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.