Multiple sequence alignment - TraesCS2D01G023500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G023500 chr2D 100.000 3751 0 0 1 3751 10522506 10526256 0.000000e+00 6927.0
1 TraesCS2D01G023500 chr2D 97.689 2164 44 4 1095 3256 10427845 10430004 0.000000e+00 3714.0
2 TraesCS2D01G023500 chr2D 95.610 934 38 3 167 1098 374959120 374960052 0.000000e+00 1495.0
3 TraesCS2D01G023500 chr2D 95.793 927 36 3 172 1096 459362595 459361670 0.000000e+00 1493.0
4 TraesCS2D01G023500 chr2D 87.049 471 31 12 3307 3751 10430007 10430473 4.320000e-139 505.0
5 TraesCS2D01G023500 chr2A 91.227 2143 132 33 1095 3194 10730291 10732420 0.000000e+00 2865.0
6 TraesCS2D01G023500 chr2A 94.261 1028 51 5 1307 2334 10834538 10835557 0.000000e+00 1565.0
7 TraesCS2D01G023500 chr2A 88.303 872 51 14 2377 3199 10733378 10734247 0.000000e+00 998.0
8 TraesCS2D01G023500 chr2A 84.111 793 66 30 2332 3090 10842385 10843151 0.000000e+00 712.0
9 TraesCS2D01G023500 chr2A 96.190 105 3 1 2239 2343 10733285 10733388 1.790000e-38 171.0
10 TraesCS2D01G023500 chr2B 90.018 2174 138 44 1095 3220 13914989 13912847 0.000000e+00 2739.0
11 TraesCS2D01G023500 chr2B 89.448 2066 133 44 1095 3123 14334068 14336085 0.000000e+00 2529.0
12 TraesCS2D01G023500 chr2B 94.813 482 23 2 2660 3139 14498997 14499478 0.000000e+00 750.0
13 TraesCS2D01G023500 chr2B 94.606 482 24 2 2660 3139 14470612 14471093 0.000000e+00 745.0
14 TraesCS2D01G023500 chr2B 87.759 482 46 8 3216 3686 14445762 14446241 5.480000e-153 551.0
15 TraesCS2D01G023500 chr2B 87.552 482 47 8 3216 3686 14472261 14472740 2.550000e-151 545.0
16 TraesCS2D01G023500 chr2B 87.552 482 47 8 3216 3686 14500646 14501125 2.550000e-151 545.0
17 TraesCS2D01G023500 chr2B 95.312 64 3 0 3126 3189 14445700 14445763 6.630000e-18 102.0
18 TraesCS2D01G023500 chr2B 95.312 64 3 0 3126 3189 14472199 14472262 6.630000e-18 102.0
19 TraesCS2D01G023500 chr2B 95.312 64 3 0 3126 3189 14500584 14500647 6.630000e-18 102.0
20 TraesCS2D01G023500 chr2B 89.091 55 5 1 3173 3227 15464653 15464600 2.420000e-07 67.6
21 TraesCS2D01G023500 chr3D 96.220 926 33 2 174 1098 599076352 599077276 0.000000e+00 1515.0
22 TraesCS2D01G023500 chr3D 95.887 924 37 1 174 1096 314494775 314495698 0.000000e+00 1495.0
23 TraesCS2D01G023500 chr3D 94.820 946 43 6 157 1098 253062875 253061932 0.000000e+00 1471.0
24 TraesCS2D01G023500 chr3D 95.906 171 7 0 3 173 123029176 123029346 1.030000e-70 278.0
25 TraesCS2D01G023500 chr3D 94.318 176 9 1 4 179 193261486 193261312 6.180000e-68 268.0
26 TraesCS2D01G023500 chr4D 96.117 927 35 1 173 1098 131015812 131014886 0.000000e+00 1511.0
27 TraesCS2D01G023500 chr4D 95.788 926 38 1 174 1098 95685683 95686608 0.000000e+00 1493.0
28 TraesCS2D01G023500 chr4D 96.491 171 6 0 3 173 441290367 441290537 2.210000e-72 283.0
29 TraesCS2D01G023500 chr4D 95.402 174 7 1 3 176 293173101 293173273 3.690000e-70 276.0
30 TraesCS2D01G023500 chr7D 96.117 927 33 3 174 1098 354174775 354173850 0.000000e+00 1509.0
31 TraesCS2D01G023500 chr7D 95.906 171 7 0 3 173 365723870 365723700 1.030000e-70 278.0
32 TraesCS2D01G023500 chr7D 95.322 171 8 0 3 173 295155682 295155852 4.770000e-69 272.0
33 TraesCS2D01G023500 chr1D 95.910 929 35 2 173 1098 236332095 236333023 0.000000e+00 1502.0
34 TraesCS2D01G023500 chr1D 95.906 171 7 0 3 173 122522072 122521902 1.030000e-70 278.0
35 TraesCS2D01G023500 chr1D 95.322 171 8 0 3 173 257589533 257589363 4.770000e-69 272.0
36 TraesCS2D01G023500 chr5A 84.164 1143 145 20 1492 2626 555070250 555069136 0.000000e+00 1075.0
37 TraesCS2D01G023500 chrUn 94.813 482 23 2 2660 3139 453944155 453944636 0.000000e+00 750.0
38 TraesCS2D01G023500 chr5D 95.858 169 7 0 3 171 29909128 29909296 1.330000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G023500 chr2D 10522506 10526256 3750 False 6927.000000 6927 100.000000 1 3751 1 chr2D.!!$F1 3750
1 TraesCS2D01G023500 chr2D 10427845 10430473 2628 False 2109.500000 3714 92.369000 1095 3751 2 chr2D.!!$F3 2656
2 TraesCS2D01G023500 chr2D 374959120 374960052 932 False 1495.000000 1495 95.610000 167 1098 1 chr2D.!!$F2 931
3 TraesCS2D01G023500 chr2D 459361670 459362595 925 True 1493.000000 1493 95.793000 172 1096 1 chr2D.!!$R1 924
4 TraesCS2D01G023500 chr2A 10834538 10835557 1019 False 1565.000000 1565 94.261000 1307 2334 1 chr2A.!!$F1 1027
5 TraesCS2D01G023500 chr2A 10730291 10734247 3956 False 1344.666667 2865 91.906667 1095 3199 3 chr2A.!!$F3 2104
6 TraesCS2D01G023500 chr2A 10842385 10843151 766 False 712.000000 712 84.111000 2332 3090 1 chr2A.!!$F2 758
7 TraesCS2D01G023500 chr2B 13912847 13914989 2142 True 2739.000000 2739 90.018000 1095 3220 1 chr2B.!!$R1 2125
8 TraesCS2D01G023500 chr2B 14334068 14336085 2017 False 2529.000000 2529 89.448000 1095 3123 1 chr2B.!!$F1 2028
9 TraesCS2D01G023500 chr2B 14498997 14501125 2128 False 465.666667 750 92.559000 2660 3686 3 chr2B.!!$F4 1026
10 TraesCS2D01G023500 chr2B 14470612 14472740 2128 False 464.000000 745 92.490000 2660 3686 3 chr2B.!!$F3 1026
11 TraesCS2D01G023500 chr2B 14445700 14446241 541 False 326.500000 551 91.535500 3126 3686 2 chr2B.!!$F2 560
12 TraesCS2D01G023500 chr3D 599076352 599077276 924 False 1515.000000 1515 96.220000 174 1098 1 chr3D.!!$F3 924
13 TraesCS2D01G023500 chr3D 314494775 314495698 923 False 1495.000000 1495 95.887000 174 1096 1 chr3D.!!$F2 922
14 TraesCS2D01G023500 chr3D 253061932 253062875 943 True 1471.000000 1471 94.820000 157 1098 1 chr3D.!!$R2 941
15 TraesCS2D01G023500 chr4D 131014886 131015812 926 True 1511.000000 1511 96.117000 173 1098 1 chr4D.!!$R1 925
16 TraesCS2D01G023500 chr4D 95685683 95686608 925 False 1493.000000 1493 95.788000 174 1098 1 chr4D.!!$F1 924
17 TraesCS2D01G023500 chr7D 354173850 354174775 925 True 1509.000000 1509 96.117000 174 1098 1 chr7D.!!$R1 924
18 TraesCS2D01G023500 chr1D 236332095 236333023 928 False 1502.000000 1502 95.910000 173 1098 1 chr1D.!!$F1 925
19 TraesCS2D01G023500 chr5A 555069136 555070250 1114 True 1075.000000 1075 84.164000 1492 2626 1 chr5A.!!$R1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.035630 CCTCCAGCTCCTTCACCTTG 60.036 60.000 0.00 0.00 0.00 3.61 F
142 143 0.247460 TCATTGAGCGTCTCCCTGTG 59.753 55.000 4.73 0.32 0.00 3.66 F
143 144 1.078848 ATTGAGCGTCTCCCTGTGC 60.079 57.895 4.73 0.00 0.00 4.57 F
160 161 1.449956 GCCTCTGCTCCAGCTCTTG 60.450 63.158 0.00 0.00 42.66 3.02 F
1941 1949 0.905357 CCGAATCTTGAGACCCCACT 59.095 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 1048 1.151221 CGGGGGCCATCATCATCAA 59.849 57.895 4.39 0.0 0.00 2.57 R
1845 1853 1.392589 AACACCAAACCTGAGTGCAG 58.607 50.000 0.00 0.0 41.93 4.41 R
1941 1949 3.041211 ACAGTAGCAGATATTGGCCTCA 58.959 45.455 3.32 0.0 0.00 3.86 R
2014 2022 4.641989 GCATCCTTTGTAGGTGTCATGAAT 59.358 41.667 0.00 0.0 42.60 2.57 R
3708 6739 0.036732 GGTGAGGTTGCACATCTGGA 59.963 55.000 0.00 0.0 40.52 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.665185 GCCGTTGAGCGTGTCCTT 60.665 61.111 0.00 0.00 39.32 3.36
35 36 2.668280 GCCGTTGAGCGTGTCCTTC 61.668 63.158 0.00 0.00 39.32 3.46
36 37 1.006102 CCGTTGAGCGTGTCCTTCT 60.006 57.895 0.00 0.00 39.32 2.85
37 38 1.009389 CCGTTGAGCGTGTCCTTCTC 61.009 60.000 0.00 0.00 39.32 2.87
38 39 1.009389 CGTTGAGCGTGTCCTTCTCC 61.009 60.000 0.00 0.00 35.54 3.71
39 40 0.318762 GTTGAGCGTGTCCTTCTCCT 59.681 55.000 0.00 0.00 0.00 3.69
40 41 0.318441 TTGAGCGTGTCCTTCTCCTG 59.682 55.000 0.00 0.00 0.00 3.86
41 42 1.216710 GAGCGTGTCCTTCTCCTGG 59.783 63.158 0.00 0.00 0.00 4.45
42 43 2.232298 GAGCGTGTCCTTCTCCTGGG 62.232 65.000 0.00 0.00 0.00 4.45
43 44 2.283529 GCGTGTCCTTCTCCTGGGA 61.284 63.158 0.00 0.00 0.00 4.37
44 45 1.617947 GCGTGTCCTTCTCCTGGGAT 61.618 60.000 0.00 0.00 33.89 3.85
45 46 1.776662 CGTGTCCTTCTCCTGGGATA 58.223 55.000 0.00 0.00 33.89 2.59
46 47 1.683917 CGTGTCCTTCTCCTGGGATAG 59.316 57.143 0.00 0.00 33.89 2.08
47 48 1.414550 GTGTCCTTCTCCTGGGATAGC 59.585 57.143 0.00 0.00 33.89 2.97
48 49 1.292242 TGTCCTTCTCCTGGGATAGCT 59.708 52.381 0.00 0.00 33.89 3.32
49 50 2.293184 TGTCCTTCTCCTGGGATAGCTT 60.293 50.000 0.00 0.00 33.89 3.74
50 51 2.774809 GTCCTTCTCCTGGGATAGCTTT 59.225 50.000 0.00 0.00 33.89 3.51
51 52 3.967987 GTCCTTCTCCTGGGATAGCTTTA 59.032 47.826 0.00 0.00 33.89 1.85
52 53 4.039852 GTCCTTCTCCTGGGATAGCTTTAG 59.960 50.000 0.00 0.00 33.89 1.85
53 54 3.326297 CCTTCTCCTGGGATAGCTTTAGG 59.674 52.174 0.00 0.00 0.00 2.69
54 55 2.977808 TCTCCTGGGATAGCTTTAGGG 58.022 52.381 0.00 0.00 0.00 3.53
55 56 1.349357 CTCCTGGGATAGCTTTAGGGC 59.651 57.143 0.00 0.00 0.00 5.19
56 57 0.402121 CCTGGGATAGCTTTAGGGCC 59.598 60.000 0.00 0.00 0.00 5.80
57 58 1.439543 CTGGGATAGCTTTAGGGCCT 58.560 55.000 12.58 12.58 0.00 5.19
58 59 2.621070 CTGGGATAGCTTTAGGGCCTA 58.379 52.381 9.81 9.81 0.00 3.93
59 60 2.303311 CTGGGATAGCTTTAGGGCCTAC 59.697 54.545 14.17 1.63 0.00 3.18
60 61 2.090153 TGGGATAGCTTTAGGGCCTACT 60.090 50.000 14.17 10.09 0.00 2.57
61 62 2.568062 GGGATAGCTTTAGGGCCTACTC 59.432 54.545 14.17 5.28 0.00 2.59
62 63 2.568062 GGATAGCTTTAGGGCCTACTCC 59.432 54.545 14.17 8.92 0.00 3.85
63 64 3.512496 GATAGCTTTAGGGCCTACTCCT 58.488 50.000 14.17 11.54 38.36 3.69
64 65 2.272074 AGCTTTAGGGCCTACTCCTT 57.728 50.000 14.17 0.00 35.92 3.36
65 66 2.120312 AGCTTTAGGGCCTACTCCTTC 58.880 52.381 14.17 0.00 35.92 3.46
66 67 1.838077 GCTTTAGGGCCTACTCCTTCA 59.162 52.381 14.17 0.00 35.92 3.02
67 68 2.158885 GCTTTAGGGCCTACTCCTTCAG 60.159 54.545 14.17 2.23 35.92 3.02
68 69 1.497161 TTAGGGCCTACTCCTTCAGC 58.503 55.000 14.17 0.00 35.92 4.26
69 70 0.398664 TAGGGCCTACTCCTTCAGCC 60.399 60.000 9.81 0.00 43.09 4.85
70 71 2.911928 GGCCTACTCCTTCAGCCC 59.088 66.667 0.00 0.00 37.66 5.19
71 72 2.501610 GCCTACTCCTTCAGCCCG 59.498 66.667 0.00 0.00 0.00 6.13
72 73 2.359967 GCCTACTCCTTCAGCCCGT 61.360 63.158 0.00 0.00 0.00 5.28
73 74 1.817209 CCTACTCCTTCAGCCCGTC 59.183 63.158 0.00 0.00 0.00 4.79
74 75 1.677637 CCTACTCCTTCAGCCCGTCC 61.678 65.000 0.00 0.00 0.00 4.79
75 76 1.677637 CTACTCCTTCAGCCCGTCCC 61.678 65.000 0.00 0.00 0.00 4.46
76 77 4.148825 CTCCTTCAGCCCGTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
79 80 4.821589 CTTCAGCCCGTCCCGCTC 62.822 72.222 0.00 0.00 33.17 5.03
88 89 3.775654 GTCCCGCTCCACCTCCAG 61.776 72.222 0.00 0.00 0.00 3.86
91 92 4.154347 CCGCTCCACCTCCAGCTC 62.154 72.222 0.00 0.00 33.09 4.09
92 93 4.154347 CGCTCCACCTCCAGCTCC 62.154 72.222 0.00 0.00 33.09 4.70
93 94 2.686835 GCTCCACCTCCAGCTCCT 60.687 66.667 0.00 0.00 32.48 3.69
94 95 2.297129 GCTCCACCTCCAGCTCCTT 61.297 63.158 0.00 0.00 32.48 3.36
95 96 1.904032 CTCCACCTCCAGCTCCTTC 59.096 63.158 0.00 0.00 0.00 3.46
96 97 0.906756 CTCCACCTCCAGCTCCTTCA 60.907 60.000 0.00 0.00 0.00 3.02
97 98 1.194781 TCCACCTCCAGCTCCTTCAC 61.195 60.000 0.00 0.00 0.00 3.18
98 99 1.298014 CACCTCCAGCTCCTTCACC 59.702 63.158 0.00 0.00 0.00 4.02
99 100 1.159664 ACCTCCAGCTCCTTCACCT 59.840 57.895 0.00 0.00 0.00 4.00
100 101 0.474660 ACCTCCAGCTCCTTCACCTT 60.475 55.000 0.00 0.00 0.00 3.50
101 102 0.035630 CCTCCAGCTCCTTCACCTTG 60.036 60.000 0.00 0.00 0.00 3.61
102 103 0.676151 CTCCAGCTCCTTCACCTTGC 60.676 60.000 0.00 0.00 0.00 4.01
103 104 1.676967 CCAGCTCCTTCACCTTGCC 60.677 63.158 0.00 0.00 0.00 4.52
104 105 2.037136 CAGCTCCTTCACCTTGCCG 61.037 63.158 0.00 0.00 0.00 5.69
105 106 2.747855 GCTCCTTCACCTTGCCGG 60.748 66.667 0.00 0.00 39.35 6.13
106 107 2.747855 CTCCTTCACCTTGCCGGC 60.748 66.667 22.73 22.73 35.61 6.13
107 108 4.697756 TCCTTCACCTTGCCGGCG 62.698 66.667 23.90 10.49 35.61 6.46
109 110 3.726517 CTTCACCTTGCCGGCGTG 61.727 66.667 23.90 23.08 35.61 5.34
110 111 4.243008 TTCACCTTGCCGGCGTGA 62.243 61.111 25.78 25.78 34.80 4.35
111 112 3.758973 TTCACCTTGCCGGCGTGAA 62.759 57.895 31.82 31.82 42.60 3.18
112 113 4.025401 CACCTTGCCGGCGTGAAC 62.025 66.667 23.71 0.00 35.61 3.18
115 116 3.726517 CTTGCCGGCGTGAACCAG 61.727 66.667 23.90 4.68 0.00 4.00
116 117 4.243008 TTGCCGGCGTGAACCAGA 62.243 61.111 23.90 0.00 0.00 3.86
117 118 4.680237 TGCCGGCGTGAACCAGAG 62.680 66.667 23.90 0.00 0.00 3.35
120 121 4.379243 CGGCGTGAACCAGAGCCT 62.379 66.667 0.00 0.00 46.85 4.58
121 122 2.743928 GGCGTGAACCAGAGCCTG 60.744 66.667 0.00 0.00 45.67 4.85
130 131 3.473147 CCAGAGCCTGGTCATTGAG 57.527 57.895 11.85 0.00 45.82 3.02
131 132 0.747283 CCAGAGCCTGGTCATTGAGC 60.747 60.000 8.91 8.91 45.82 4.26
132 133 1.088340 CAGAGCCTGGTCATTGAGCG 61.088 60.000 10.98 6.15 32.15 5.03
133 134 1.078848 GAGCCTGGTCATTGAGCGT 60.079 57.895 10.98 0.00 32.15 5.07
134 135 1.078848 AGCCTGGTCATTGAGCGTC 60.079 57.895 10.98 3.17 32.15 5.19
135 136 1.078848 GCCTGGTCATTGAGCGTCT 60.079 57.895 10.98 0.00 32.15 4.18
136 137 1.086634 GCCTGGTCATTGAGCGTCTC 61.087 60.000 10.98 0.58 32.15 3.36
137 138 0.460987 CCTGGTCATTGAGCGTCTCC 60.461 60.000 10.98 0.00 32.15 3.71
138 139 0.460987 CTGGTCATTGAGCGTCTCCC 60.461 60.000 10.98 0.00 32.15 4.30
139 140 0.904865 TGGTCATTGAGCGTCTCCCT 60.905 55.000 10.98 0.00 32.15 4.20
140 141 0.460987 GGTCATTGAGCGTCTCCCTG 60.461 60.000 0.00 3.11 0.00 4.45
141 142 0.247736 GTCATTGAGCGTCTCCCTGT 59.752 55.000 4.73 0.00 0.00 4.00
142 143 0.247460 TCATTGAGCGTCTCCCTGTG 59.753 55.000 4.73 0.32 0.00 3.66
143 144 1.078848 ATTGAGCGTCTCCCTGTGC 60.079 57.895 4.73 0.00 0.00 4.57
144 145 2.527951 ATTGAGCGTCTCCCTGTGCC 62.528 60.000 4.73 0.00 0.00 5.01
145 146 3.386237 GAGCGTCTCCCTGTGCCT 61.386 66.667 0.00 0.00 0.00 4.75
146 147 3.363844 GAGCGTCTCCCTGTGCCTC 62.364 68.421 0.00 0.00 0.00 4.70
147 148 3.386237 GCGTCTCCCTGTGCCTCT 61.386 66.667 0.00 0.00 0.00 3.69
148 149 2.575993 CGTCTCCCTGTGCCTCTG 59.424 66.667 0.00 0.00 0.00 3.35
149 150 2.267324 GTCTCCCTGTGCCTCTGC 59.733 66.667 0.00 0.00 38.26 4.26
150 151 2.121385 TCTCCCTGTGCCTCTGCT 59.879 61.111 0.00 0.00 38.71 4.24
151 152 1.986757 TCTCCCTGTGCCTCTGCTC 60.987 63.158 0.00 0.00 38.71 4.26
152 153 3.005539 TCCCTGTGCCTCTGCTCC 61.006 66.667 0.00 0.00 38.71 4.70
153 154 3.324930 CCCTGTGCCTCTGCTCCA 61.325 66.667 0.00 0.00 38.71 3.86
154 155 2.268280 CCTGTGCCTCTGCTCCAG 59.732 66.667 0.00 0.00 38.71 3.86
155 156 2.436292 CTGTGCCTCTGCTCCAGC 60.436 66.667 0.00 0.00 42.50 4.85
156 157 2.926779 TGTGCCTCTGCTCCAGCT 60.927 61.111 0.00 0.00 42.66 4.24
157 158 2.125188 GTGCCTCTGCTCCAGCTC 60.125 66.667 0.00 0.00 42.66 4.09
158 159 2.284478 TGCCTCTGCTCCAGCTCT 60.284 61.111 0.00 0.00 42.66 4.09
159 160 1.917282 TGCCTCTGCTCCAGCTCTT 60.917 57.895 0.00 0.00 42.66 2.85
160 161 1.449956 GCCTCTGCTCCAGCTCTTG 60.450 63.158 0.00 0.00 42.66 3.02
168 169 3.710722 CCAGCTCTTGGGTCCGCT 61.711 66.667 0.00 0.00 43.75 5.52
169 170 2.435586 CAGCTCTTGGGTCCGCTG 60.436 66.667 1.86 1.86 43.10 5.18
170 171 4.400961 AGCTCTTGGGTCCGCTGC 62.401 66.667 0.00 0.00 0.00 5.25
267 268 8.336080 GGAGCTAAAGGTAGAACAAATATTTCG 58.664 37.037 0.00 0.00 0.00 3.46
359 360 8.241497 TGAAACTAGAAGTACTTTGTAGGTGA 57.759 34.615 21.29 9.61 37.05 4.02
450 452 7.094631 ACACAATAAAGTTAGTATGCGAGTGA 58.905 34.615 0.00 0.00 0.00 3.41
466 468 3.400255 GAGTGAGGAAAAGTGGTGGTAC 58.600 50.000 0.00 0.00 0.00 3.34
470 472 2.298163 GAGGAAAAGTGGTGGTACGAGA 59.702 50.000 0.00 0.00 0.00 4.04
521 524 7.989741 ACTACTTTACTAGACCGATAGCAAGTA 59.010 37.037 0.00 0.39 34.14 2.24
529 532 6.650427 AGACCGATAGCAAGTATTATGTGA 57.350 37.500 0.00 0.00 0.00 3.58
650 653 6.900743 AGGTAAAACCCAACCATAGCATTAAT 59.099 34.615 0.00 0.00 39.75 1.40
689 692 5.850557 TCAATCCCGTATGCATCAATTTT 57.149 34.783 0.19 0.00 0.00 1.82
779 782 2.738521 GTGTGATCCACGCGTGCT 60.739 61.111 33.17 21.97 37.14 4.40
1020 1023 4.946157 GTGATGGAGATGTTGGTGAAGATT 59.054 41.667 0.00 0.00 0.00 2.40
1045 1048 1.503818 GGTGTTGGTGTTGATCGCGT 61.504 55.000 5.77 0.00 0.00 6.01
1242 1247 2.485814 GGTTGATTCAGTTGAGGACAGC 59.514 50.000 0.00 0.00 0.00 4.40
1343 1348 6.760440 ACATCCTGAGGTATGATCATCTTT 57.240 37.500 12.53 0.00 0.00 2.52
1350 1355 9.434420 CCTGAGGTATGATCATCTTTTATCTTC 57.566 37.037 12.53 2.76 0.00 2.87
1450 1455 6.036191 GCTAGTCAAGGAAATGTACTAGTTGC 59.964 42.308 0.00 0.00 41.00 4.17
1625 1633 2.360350 CGCCATCACCAAGCCTGT 60.360 61.111 0.00 0.00 0.00 4.00
1719 1727 2.913578 CCCTGCAACTGCCAGCAA 60.914 61.111 0.00 0.00 40.73 3.91
1941 1949 0.905357 CCGAATCTTGAGACCCCACT 59.095 55.000 0.00 0.00 0.00 4.00
2014 2022 2.223829 GCGATCAGCTAGAGCCAAGTTA 60.224 50.000 0.00 0.00 44.04 2.24
2171 2180 6.992063 ACTCATACTGATCATTGTTCAACC 57.008 37.500 0.00 0.00 0.00 3.77
2450 2461 5.639506 GTGTGAGCTGTGCTTTCTATCTTTA 59.360 40.000 0.00 0.00 39.88 1.85
2613 2631 5.984233 TTGCTGGTAAACATAGCTTATCG 57.016 39.130 0.00 0.00 38.25 2.92
2656 2674 6.701841 CGTGCTACTATTACACTCCATCATTT 59.298 38.462 0.00 0.00 32.07 2.32
3004 3049 1.000385 CCATGCTCCGAGATGTCTCTC 60.000 57.143 8.28 0.00 43.86 3.20
3091 4961 3.730715 CGTTCAGGCATTTTGTGTTCTTC 59.269 43.478 0.00 0.00 0.00 2.87
3240 6244 2.711922 CCTGTTCGGTAGCTCGCCT 61.712 63.158 0.00 0.00 0.00 5.52
3262 6266 1.379044 CCCAGCTTCCGCAAATCCT 60.379 57.895 0.00 0.00 39.10 3.24
3263 6267 0.967380 CCCAGCTTCCGCAAATCCTT 60.967 55.000 0.00 0.00 39.10 3.36
3266 6270 1.541147 CAGCTTCCGCAAATCCTTGAA 59.459 47.619 0.00 0.00 39.10 2.69
3278 6282 2.348998 CTTGAACGGAGCTGGCCT 59.651 61.111 3.32 0.00 0.00 5.19
3282 6286 1.302511 GAACGGAGCTGGCCTGAAA 60.303 57.895 14.77 0.00 0.00 2.69
3292 6296 1.252904 TGGCCTGAAAATGCTGCTCC 61.253 55.000 3.32 0.00 0.00 4.70
3343 6347 0.968901 TTGGAGAGGCGTCCACGTAT 60.969 55.000 10.77 0.00 46.75 3.06
3368 6372 3.124921 CGGAGCGGCATTTTCGGT 61.125 61.111 1.45 0.00 41.19 4.69
3394 6398 2.124560 AGGAATCGGGAATCCTGGAT 57.875 50.000 8.47 2.57 44.38 3.41
3399 6403 1.590591 TCGGGAATCCTGGATTTGGA 58.409 50.000 22.15 16.03 38.06 3.53
3461 6465 3.416119 TTGATAGACGTCGCTCGAAAT 57.584 42.857 10.46 0.00 42.86 2.17
3472 6476 3.057174 GTCGCTCGAAATATCCTGATCCT 60.057 47.826 0.00 0.00 0.00 3.24
3506 6511 0.895530 CTCCTGCTCGTCAACCCTAA 59.104 55.000 0.00 0.00 0.00 2.69
3512 6517 2.435410 CGTCAACCCTAACCGCCC 60.435 66.667 0.00 0.00 0.00 6.13
3513 6518 2.045634 GTCAACCCTAACCGCCCC 60.046 66.667 0.00 0.00 0.00 5.80
3514 6519 2.529643 TCAACCCTAACCGCCCCA 60.530 61.111 0.00 0.00 0.00 4.96
3516 6521 3.654143 AACCCTAACCGCCCCACC 61.654 66.667 0.00 0.00 0.00 4.61
3527 6532 3.087253 CCCCACCGCCACCATCTA 61.087 66.667 0.00 0.00 0.00 1.98
3529 6534 2.367202 CCCACCGCCACCATCTACT 61.367 63.158 0.00 0.00 0.00 2.57
3530 6535 1.144057 CCACCGCCACCATCTACTC 59.856 63.158 0.00 0.00 0.00 2.59
3531 6536 1.613317 CCACCGCCACCATCTACTCA 61.613 60.000 0.00 0.00 0.00 3.41
3536 6547 1.961180 GCCACCATCTACTCACCGCT 61.961 60.000 0.00 0.00 0.00 5.52
3581 6609 1.020333 CGACGGTCTCTTCCTCGAGT 61.020 60.000 12.31 0.00 33.44 4.18
3611 6639 2.282958 ACCGCGAGTCCTTCCTCA 60.283 61.111 8.23 0.00 0.00 3.86
3706 6737 2.909006 TCCAGAATCTCAAGGTGAGCTT 59.091 45.455 0.17 0.00 43.95 3.74
3708 6739 3.558746 CCAGAATCTCAAGGTGAGCTTGT 60.559 47.826 22.00 4.69 43.95 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.318762 AGGAGAAGGACACGCTCAAC 59.681 55.000 0.00 0.00 0.00 3.18
21 22 0.318441 CAGGAGAAGGACACGCTCAA 59.682 55.000 0.00 0.00 0.00 3.02
22 23 1.536073 CCAGGAGAAGGACACGCTCA 61.536 60.000 0.00 0.00 0.00 4.26
23 24 1.216710 CCAGGAGAAGGACACGCTC 59.783 63.158 0.00 0.00 0.00 5.03
24 25 2.286523 CCCAGGAGAAGGACACGCT 61.287 63.158 0.00 0.00 0.00 5.07
25 26 1.617947 ATCCCAGGAGAAGGACACGC 61.618 60.000 0.00 0.00 34.20 5.34
26 27 1.683917 CTATCCCAGGAGAAGGACACG 59.316 57.143 0.00 0.00 34.20 4.49
27 28 1.414550 GCTATCCCAGGAGAAGGACAC 59.585 57.143 0.00 0.00 34.20 3.67
28 29 1.292242 AGCTATCCCAGGAGAAGGACA 59.708 52.381 0.00 0.00 34.20 4.02
29 30 2.095604 AGCTATCCCAGGAGAAGGAC 57.904 55.000 0.00 0.00 34.20 3.85
30 31 2.877154 AAGCTATCCCAGGAGAAGGA 57.123 50.000 0.00 0.00 36.36 3.36
31 32 3.326297 CCTAAAGCTATCCCAGGAGAAGG 59.674 52.174 0.00 0.00 0.00 3.46
32 33 3.326297 CCCTAAAGCTATCCCAGGAGAAG 59.674 52.174 0.00 0.00 0.00 2.85
33 34 3.318313 CCCTAAAGCTATCCCAGGAGAA 58.682 50.000 0.00 0.00 0.00 2.87
34 35 2.977808 CCCTAAAGCTATCCCAGGAGA 58.022 52.381 0.00 0.00 0.00 3.71
35 36 1.349357 GCCCTAAAGCTATCCCAGGAG 59.651 57.143 0.00 0.00 0.00 3.69
36 37 1.435256 GCCCTAAAGCTATCCCAGGA 58.565 55.000 0.00 0.00 0.00 3.86
37 38 0.402121 GGCCCTAAAGCTATCCCAGG 59.598 60.000 0.00 0.00 0.00 4.45
38 39 1.439543 AGGCCCTAAAGCTATCCCAG 58.560 55.000 0.00 0.00 0.00 4.45
39 40 2.090153 AGTAGGCCCTAAAGCTATCCCA 60.090 50.000 0.00 0.00 0.00 4.37
40 41 2.568062 GAGTAGGCCCTAAAGCTATCCC 59.432 54.545 0.00 0.00 0.00 3.85
41 42 2.568062 GGAGTAGGCCCTAAAGCTATCC 59.432 54.545 0.00 0.00 0.00 2.59
42 43 3.512496 AGGAGTAGGCCCTAAAGCTATC 58.488 50.000 0.00 0.00 30.92 2.08
43 44 3.639625 AGGAGTAGGCCCTAAAGCTAT 57.360 47.619 0.00 0.00 30.92 2.97
44 45 3.306613 GAAGGAGTAGGCCCTAAAGCTA 58.693 50.000 0.00 0.00 32.77 3.32
45 46 2.120312 GAAGGAGTAGGCCCTAAAGCT 58.880 52.381 0.00 0.00 32.77 3.74
46 47 1.838077 TGAAGGAGTAGGCCCTAAAGC 59.162 52.381 0.00 0.00 32.77 3.51
47 48 2.158885 GCTGAAGGAGTAGGCCCTAAAG 60.159 54.545 0.00 0.00 32.77 1.85
48 49 1.838077 GCTGAAGGAGTAGGCCCTAAA 59.162 52.381 0.00 0.00 32.77 1.85
49 50 1.497161 GCTGAAGGAGTAGGCCCTAA 58.503 55.000 0.00 0.00 32.77 2.69
50 51 0.398664 GGCTGAAGGAGTAGGCCCTA 60.399 60.000 0.00 0.00 37.12 3.53
51 52 1.690985 GGCTGAAGGAGTAGGCCCT 60.691 63.158 0.00 0.00 37.12 5.19
52 53 2.911928 GGCTGAAGGAGTAGGCCC 59.088 66.667 0.00 0.00 37.12 5.80
54 55 2.299503 GACGGGCTGAAGGAGTAGGC 62.300 65.000 0.00 0.00 38.62 3.93
55 56 1.677637 GGACGGGCTGAAGGAGTAGG 61.678 65.000 0.00 0.00 0.00 3.18
56 57 1.677637 GGGACGGGCTGAAGGAGTAG 61.678 65.000 0.00 0.00 0.00 2.57
57 58 1.684734 GGGACGGGCTGAAGGAGTA 60.685 63.158 0.00 0.00 0.00 2.59
58 59 3.003763 GGGACGGGCTGAAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
71 72 3.775654 CTGGAGGTGGAGCGGGAC 61.776 72.222 0.00 0.00 0.00 4.46
74 75 4.154347 GAGCTGGAGGTGGAGCGG 62.154 72.222 0.00 0.00 40.34 5.52
75 76 4.154347 GGAGCTGGAGGTGGAGCG 62.154 72.222 0.00 0.00 40.34 5.03
76 77 2.250741 GAAGGAGCTGGAGGTGGAGC 62.251 65.000 0.00 0.00 35.28 4.70
77 78 0.906756 TGAAGGAGCTGGAGGTGGAG 60.907 60.000 0.00 0.00 0.00 3.86
78 79 1.158466 TGAAGGAGCTGGAGGTGGA 59.842 57.895 0.00 0.00 0.00 4.02
79 80 1.298014 GTGAAGGAGCTGGAGGTGG 59.702 63.158 0.00 0.00 0.00 4.61
80 81 1.197430 AGGTGAAGGAGCTGGAGGTG 61.197 60.000 0.00 0.00 0.00 4.00
81 82 0.474660 AAGGTGAAGGAGCTGGAGGT 60.475 55.000 0.00 0.00 30.84 3.85
82 83 0.035630 CAAGGTGAAGGAGCTGGAGG 60.036 60.000 0.00 0.00 30.84 4.30
83 84 0.676151 GCAAGGTGAAGGAGCTGGAG 60.676 60.000 0.00 0.00 30.84 3.86
84 85 1.376466 GCAAGGTGAAGGAGCTGGA 59.624 57.895 0.00 0.00 30.84 3.86
85 86 1.676967 GGCAAGGTGAAGGAGCTGG 60.677 63.158 0.00 0.00 30.84 4.85
86 87 2.037136 CGGCAAGGTGAAGGAGCTG 61.037 63.158 0.00 0.00 30.84 4.24
87 88 2.348998 CGGCAAGGTGAAGGAGCT 59.651 61.111 0.00 0.00 0.00 4.09
88 89 2.747855 CCGGCAAGGTGAAGGAGC 60.748 66.667 0.00 0.00 34.51 4.70
89 90 2.747855 GCCGGCAAGGTGAAGGAG 60.748 66.667 24.80 0.00 43.70 3.69
98 99 3.726517 CTGGTTCACGCCGGCAAG 61.727 66.667 28.98 18.35 0.00 4.01
99 100 4.243008 TCTGGTTCACGCCGGCAA 62.243 61.111 28.98 10.91 34.92 4.52
100 101 4.680237 CTCTGGTTCACGCCGGCA 62.680 66.667 28.98 3.37 34.92 5.69
103 104 4.379243 AGGCTCTGGTTCACGCCG 62.379 66.667 0.00 0.00 46.85 6.46
104 105 2.743928 CAGGCTCTGGTTCACGCC 60.744 66.667 0.00 0.00 42.79 5.68
105 106 2.743928 CCAGGCTCTGGTTCACGC 60.744 66.667 11.85 0.00 45.82 5.34
113 114 1.088340 CGCTCAATGACCAGGCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
114 115 1.220206 CGCTCAATGACCAGGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
115 116 1.078848 ACGCTCAATGACCAGGCTC 60.079 57.895 0.00 0.00 0.00 4.70
116 117 1.078848 GACGCTCAATGACCAGGCT 60.079 57.895 0.00 0.00 0.00 4.58
117 118 1.078848 AGACGCTCAATGACCAGGC 60.079 57.895 0.00 0.00 0.00 4.85
118 119 0.460987 GGAGACGCTCAATGACCAGG 60.461 60.000 8.71 0.00 31.08 4.45
119 120 0.460987 GGGAGACGCTCAATGACCAG 60.461 60.000 8.71 0.00 31.08 4.00
120 121 0.904865 AGGGAGACGCTCAATGACCA 60.905 55.000 8.71 0.00 31.08 4.02
121 122 0.460987 CAGGGAGACGCTCAATGACC 60.461 60.000 8.71 1.55 31.08 4.02
122 123 0.247736 ACAGGGAGACGCTCAATGAC 59.752 55.000 13.42 0.00 31.08 3.06
123 124 0.247460 CACAGGGAGACGCTCAATGA 59.753 55.000 13.42 0.00 31.08 2.57
124 125 1.364626 GCACAGGGAGACGCTCAATG 61.365 60.000 8.71 8.38 31.08 2.82
125 126 1.078848 GCACAGGGAGACGCTCAAT 60.079 57.895 8.71 0.00 31.08 2.57
126 127 2.343758 GCACAGGGAGACGCTCAA 59.656 61.111 8.71 0.00 31.08 3.02
127 128 3.695606 GGCACAGGGAGACGCTCA 61.696 66.667 8.71 0.00 31.08 4.26
128 129 3.363844 GAGGCACAGGGAGACGCTC 62.364 68.421 0.00 0.00 0.00 5.03
129 130 3.386237 GAGGCACAGGGAGACGCT 61.386 66.667 0.00 0.00 0.00 5.07
130 131 3.386237 AGAGGCACAGGGAGACGC 61.386 66.667 0.00 0.00 0.00 5.19
131 132 2.575993 CAGAGGCACAGGGAGACG 59.424 66.667 0.00 0.00 0.00 4.18
132 133 2.237534 GAGCAGAGGCACAGGGAGAC 62.238 65.000 0.00 0.00 44.61 3.36
133 134 1.986757 GAGCAGAGGCACAGGGAGA 60.987 63.158 0.00 0.00 44.61 3.71
134 135 2.583520 GAGCAGAGGCACAGGGAG 59.416 66.667 0.00 0.00 44.61 4.30
135 136 3.005539 GGAGCAGAGGCACAGGGA 61.006 66.667 0.00 0.00 44.61 4.20
136 137 3.324930 TGGAGCAGAGGCACAGGG 61.325 66.667 0.00 0.00 44.61 4.45
137 138 2.268280 CTGGAGCAGAGGCACAGG 59.732 66.667 0.00 0.00 44.61 4.00
138 139 2.436292 GCTGGAGCAGAGGCACAG 60.436 66.667 6.93 6.93 44.87 3.66
139 140 2.926779 AGCTGGAGCAGAGGCACA 60.927 61.111 0.65 0.00 45.16 4.57
140 141 2.125188 GAGCTGGAGCAGAGGCAC 60.125 66.667 0.00 0.00 45.16 5.01
141 142 1.917282 AAGAGCTGGAGCAGAGGCA 60.917 57.895 0.00 0.00 45.16 4.75
142 143 1.449956 CAAGAGCTGGAGCAGAGGC 60.450 63.158 0.00 0.00 45.16 4.70
143 144 4.937193 CAAGAGCTGGAGCAGAGG 57.063 61.111 0.00 0.00 45.16 3.69
151 152 3.710722 AGCGGACCCAAGAGCTGG 61.711 66.667 0.00 0.00 45.97 4.85
153 154 4.400961 GCAGCGGACCCAAGAGCT 62.401 66.667 0.00 0.00 41.07 4.09
167 168 0.729116 CTTGTGGGTTATCAGCGCAG 59.271 55.000 11.47 0.00 0.00 5.18
168 169 0.036164 ACTTGTGGGTTATCAGCGCA 59.964 50.000 11.47 0.00 0.00 6.09
169 170 2.018542 TACTTGTGGGTTATCAGCGC 57.981 50.000 0.00 0.00 0.00 5.92
170 171 4.307432 CCTATACTTGTGGGTTATCAGCG 58.693 47.826 0.00 0.00 0.00 5.18
450 452 2.322658 TCTCGTACCACCACTTTTCCT 58.677 47.619 0.00 0.00 0.00 3.36
466 468 1.656652 AGGGACAATTTCGCATCTCG 58.343 50.000 7.20 0.00 39.71 4.04
470 472 2.722094 TGCTTAGGGACAATTTCGCAT 58.278 42.857 7.20 0.00 39.71 4.73
521 524 2.158842 GCAGTGGCCTCTCTCACATAAT 60.159 50.000 3.81 0.00 36.43 1.28
529 532 0.690411 ATGCTAGCAGTGGCCTCTCT 60.690 55.000 23.89 8.01 42.56 3.10
586 589 3.278574 TGCGGATGCTTGCTAATAGTTT 58.721 40.909 0.00 0.00 43.34 2.66
689 692 5.165961 ACAGAAGCTTCAACCTAGCATAA 57.834 39.130 27.57 0.00 41.11 1.90
779 782 3.435457 CCTTTGGTGCCCATCATATGAGA 60.435 47.826 11.78 0.00 31.53 3.27
878 881 4.408596 TGTGTTGCCATCCTATGATGTCTA 59.591 41.667 7.16 0.00 45.78 2.59
1020 1023 1.821759 CAACACCAACACCTCCGCA 60.822 57.895 0.00 0.00 0.00 5.69
1045 1048 1.151221 CGGGGGCCATCATCATCAA 59.849 57.895 4.39 0.00 0.00 2.57
1162 1167 2.096481 TTGTCGTCGCGCAAAAGGAC 62.096 55.000 8.75 13.54 0.00 3.85
1242 1247 3.680620 TTCCCCCTTCTGCATCGCG 62.681 63.158 0.00 0.00 0.00 5.87
1343 1348 8.918202 AACTATGTTGAAAGTGTGGAAGATAA 57.082 30.769 0.00 0.00 0.00 1.75
1350 1355 7.132213 CACAAGTAACTATGTTGAAAGTGTGG 58.868 38.462 0.00 0.00 0.00 4.17
1450 1455 9.539825 AATACTTCAGATCAACTAAGCATACAG 57.460 33.333 0.00 0.00 0.00 2.74
1845 1853 1.392589 AACACCAAACCTGAGTGCAG 58.607 50.000 0.00 0.00 41.93 4.41
1941 1949 3.041211 ACAGTAGCAGATATTGGCCTCA 58.959 45.455 3.32 0.00 0.00 3.86
2014 2022 4.641989 GCATCCTTTGTAGGTGTCATGAAT 59.358 41.667 0.00 0.00 42.60 2.57
2165 2174 3.321682 CAGAGGAGCAAAAATGGGTTGAA 59.678 43.478 0.00 0.00 0.00 2.69
2171 2180 3.318839 TGTTCACAGAGGAGCAAAAATGG 59.681 43.478 0.00 0.00 0.00 3.16
2450 2461 3.365666 CGCAGACAACAAGCTGAAATGAT 60.366 43.478 0.00 0.00 34.06 2.45
2569 2587 6.218019 CAAAGAACATCTCCATTTCTTGCAA 58.782 36.000 0.00 0.00 39.10 4.08
2613 2631 8.504005 AGTAGCACGTTAAATATTTATGCATCC 58.496 33.333 24.05 15.30 31.79 3.51
2656 2674 7.814107 ACATTAACACGAATTAGGACGTCTAAA 59.186 33.333 16.46 10.35 40.89 1.85
2971 2998 2.831526 GGAGCATGGGGTTTTACACATT 59.168 45.455 0.00 0.00 0.00 2.71
3004 3049 8.183536 TCAAGGATAACAAACATCATTTCATCG 58.816 33.333 0.00 0.00 0.00 3.84
3091 4961 1.915614 GCACTGTGACCGAGCCATTG 61.916 60.000 12.86 0.00 0.00 2.82
3262 6266 2.032528 CAGGCCAGCTCCGTTCAA 59.967 61.111 5.01 0.00 0.00 2.69
3263 6267 2.050836 TTTCAGGCCAGCTCCGTTCA 62.051 55.000 5.01 0.00 0.00 3.18
3266 6270 0.962356 CATTTTCAGGCCAGCTCCGT 60.962 55.000 5.01 0.00 0.00 4.69
3278 6282 3.451141 AAAAACGGAGCAGCATTTTCA 57.549 38.095 0.00 0.00 0.00 2.69
3301 6305 3.177249 GAAGCGGCGTCCACGTAC 61.177 66.667 9.37 0.00 42.22 3.67
3323 6327 1.180456 TACGTGGACGCCTCTCCAAA 61.180 55.000 0.00 0.00 42.22 3.28
3394 6398 8.045507 TGGCATTTGCTCATAAATAATTCCAAA 58.954 29.630 2.12 0.00 41.70 3.28
3399 6403 5.984926 CGGTGGCATTTGCTCATAAATAATT 59.015 36.000 2.12 0.00 41.70 1.40
3472 6476 2.499289 GCAGGAGAACAGAGGAGAATGA 59.501 50.000 0.00 0.00 0.00 2.57
3512 6517 1.144057 GAGTAGATGGTGGCGGTGG 59.856 63.158 0.00 0.00 0.00 4.61
3513 6518 0.460284 GTGAGTAGATGGTGGCGGTG 60.460 60.000 0.00 0.00 0.00 4.94
3514 6519 1.614241 GGTGAGTAGATGGTGGCGGT 61.614 60.000 0.00 0.00 0.00 5.68
3516 6521 1.226974 CGGTGAGTAGATGGTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
3517 6522 1.521681 GCGGTGAGTAGATGGTGGC 60.522 63.158 0.00 0.00 0.00 5.01
3519 6524 0.179100 CCAGCGGTGAGTAGATGGTG 60.179 60.000 17.83 0.00 0.00 4.17
3520 6525 0.614979 ACCAGCGGTGAGTAGATGGT 60.615 55.000 17.83 0.00 36.24 3.55
3521 6526 2.202866 ACCAGCGGTGAGTAGATGG 58.797 57.895 17.83 0.00 32.98 3.51
3531 6536 1.300697 GAAGACGTTCACCAGCGGT 60.301 57.895 0.00 0.00 35.62 5.68
3536 6547 2.029964 GCCGGAAGACGTTCACCA 59.970 61.111 5.05 0.00 42.24 4.17
3566 6594 1.430228 GCGACTCGAGGAAGAGACC 59.570 63.158 18.41 0.00 40.57 3.85
3646 6674 3.706563 GAGCAGCATCGACGGCAGA 62.707 63.158 12.80 0.00 32.74 4.26
3656 6684 2.771762 GGGGGAGAGGAGCAGCAT 60.772 66.667 0.00 0.00 0.00 3.79
3706 6737 0.764271 TGAGGTTGCACATCTGGACA 59.236 50.000 0.00 0.00 29.01 4.02
3708 6739 0.036732 GGTGAGGTTGCACATCTGGA 59.963 55.000 0.00 0.00 40.52 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.