Multiple sequence alignment - TraesCS2D01G023100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G023100 chr2D 100.000 4424 0 0 1 4424 10436056 10431633 0.000000e+00 8170.0
1 TraesCS2D01G023100 chr2D 93.704 2827 124 29 996 3794 10531496 10528696 0.000000e+00 4185.0
2 TraesCS2D01G023100 chr2D 87.725 1002 68 15 33 982 10532546 10531548 0.000000e+00 1118.0
3 TraesCS2D01G023100 chr2D 83.051 177 18 9 3785 3956 10527616 10527447 2.760000e-32 150.0
4 TraesCS2D01G023100 chr2D 90.769 65 5 1 4203 4266 72573711 72573647 7.880000e-13 86.1
5 TraesCS2D01G023100 chr2D 82.353 102 12 4 4232 4330 637115631 637115729 2.840000e-12 84.2
6 TraesCS2D01G023100 chr2D 87.143 70 8 1 4202 4270 469269174 469269243 1.320000e-10 78.7
7 TraesCS2D01G023100 chr2D 100.000 31 0 0 3951 3981 131272825 131272855 1.720000e-04 58.4
8 TraesCS2D01G023100 chr2B 91.998 2012 113 18 1558 3552 15462593 15464573 0.000000e+00 2780.0
9 TraesCS2D01G023100 chr2B 89.352 2038 147 35 424 2425 14352034 14350031 0.000000e+00 2497.0
10 TraesCS2D01G023100 chr2B 87.843 1933 173 37 1556 3469 14619098 14617209 0.000000e+00 2211.0
11 TraesCS2D01G023100 chr2B 89.292 1737 113 32 35 1709 14491784 14490059 0.000000e+00 2109.0
12 TraesCS2D01G023100 chr2B 89.234 1737 114 32 35 1709 14462987 14461262 0.000000e+00 2104.0
13 TraesCS2D01G023100 chr2B 89.709 1477 82 20 2504 3956 14504825 14503395 0.000000e+00 1821.0
14 TraesCS2D01G023100 chr2B 88.508 1488 146 15 996 2466 14506298 14504819 0.000000e+00 1777.0
15 TraesCS2D01G023100 chr2B 91.188 1305 72 12 2504 3806 14477591 14476328 0.000000e+00 1733.0
16 TraesCS2D01G023100 chr2B 85.165 1274 152 25 2170 3431 14405956 14404708 0.000000e+00 1271.0
17 TraesCS2D01G023100 chr2B 84.712 1269 151 27 2170 3434 14212971 14211742 0.000000e+00 1229.0
18 TraesCS2D01G023100 chr2B 85.123 1183 149 24 996 2160 14214245 14213072 0.000000e+00 1184.0
19 TraesCS2D01G023100 chr2B 92.928 707 34 8 2846 3551 14336903 14336212 0.000000e+00 1014.0
20 TraesCS2D01G023100 chr2B 91.286 700 51 5 866 1557 14344836 14344139 0.000000e+00 946.0
21 TraesCS2D01G023100 chr2B 93.260 638 40 3 1789 2425 14460359 14459724 0.000000e+00 937.0
22 TraesCS2D01G023100 chr2B 91.887 567 43 3 1571 2137 14344092 14343529 0.000000e+00 789.0
23 TraesCS2D01G023100 chr2B 87.088 697 51 13 205 869 14620606 14619917 0.000000e+00 752.0
24 TraesCS2D01G023100 chr2B 84.625 774 69 18 38 765 14345611 14344842 0.000000e+00 725.0
25 TraesCS2D01G023100 chr2B 90.485 557 33 9 2996 3551 13912273 13912810 0.000000e+00 717.0
26 TraesCS2D01G023100 chr2B 93.095 420 24 2 2472 2889 13911863 13912279 1.050000e-170 610.0
27 TraesCS2D01G023100 chr2B 80.429 746 84 23 286 982 14408019 14407287 3.050000e-141 512.0
28 TraesCS2D01G023100 chr2B 80.000 695 86 22 211 868 13905344 13906022 8.670000e-127 464.0
29 TraesCS2D01G023100 chr2B 89.695 262 22 3 865 1121 13908134 13908395 3.300000e-86 329.0
30 TraesCS2D01G023100 chr2B 84.437 302 21 10 3492 3790 14615082 14614804 1.570000e-69 274.0
31 TraesCS2D01G023100 chr2B 77.963 481 60 24 382 823 13907568 13908041 4.390000e-65 259.0
32 TraesCS2D01G023100 chr2B 89.071 183 17 3 1 183 14352466 14352287 1.600000e-54 224.0
33 TraesCS2D01G023100 chr2B 83.516 182 25 5 3 182 15461065 15461243 9.840000e-37 165.0
34 TraesCS2D01G023100 chr2B 82.990 194 14 2 3781 3955 14613721 14613528 1.650000e-34 158.0
35 TraesCS2D01G023100 chr2B 82.456 171 25 3 1544 1709 14435839 14435669 1.280000e-30 145.0
36 TraesCS2D01G023100 chr2B 81.416 113 6 7 3859 3956 14475687 14475575 1.320000e-10 78.7
37 TraesCS2D01G023100 chrUn 89.424 1598 99 38 2 1541 345005518 345007103 0.000000e+00 1951.0
38 TraesCS2D01G023100 chrUn 88.508 1488 146 15 996 2466 353663386 353661907 0.000000e+00 1777.0
39 TraesCS2D01G023100 chrUn 91.814 1185 66 18 555 1709 329540638 329539455 0.000000e+00 1622.0
40 TraesCS2D01G023100 chrUn 91.228 912 41 11 2897 3806 461723465 461722591 0.000000e+00 1205.0
41 TraesCS2D01G023100 chrUn 93.260 638 40 3 1789 2425 329538552 329537917 0.000000e+00 937.0
42 TraesCS2D01G023100 chrUn 86.808 849 91 11 996 1829 349801102 349801944 0.000000e+00 928.0
43 TraesCS2D01G023100 chrUn 96.154 78 3 0 2472 2549 329537898 329537821 1.290000e-25 128.0
44 TraesCS2D01G023100 chr2A 88.836 1469 132 23 996 2439 10845925 10844464 0.000000e+00 1775.0
45 TraesCS2D01G023100 chr2A 87.430 1424 121 25 2155 3552 10735681 10734290 0.000000e+00 1585.0
46 TraesCS2D01G023100 chr2A 90.622 1077 75 16 2478 3551 10844459 10843406 0.000000e+00 1406.0
47 TraesCS2D01G023100 chr2A 86.914 1024 77 21 1 982 10737784 10736776 0.000000e+00 1096.0
48 TraesCS2D01G023100 chr2A 95.000 160 8 0 3953 4112 777512378 777512219 7.350000e-63 252.0
49 TraesCS2D01G023100 chr2A 78.601 243 44 8 497 733 385234371 385234611 2.130000e-33 154.0
50 TraesCS2D01G023100 chr3A 92.537 469 20 3 3957 4424 742378925 742378471 0.000000e+00 658.0
51 TraesCS2D01G023100 chr4A 94.853 136 7 0 3954 4089 729321828 729321693 3.470000e-51 213.0
52 TraesCS2D01G023100 chr1A 84.951 206 24 3 3635 3838 4695607 4695807 7.500000e-48 202.0
53 TraesCS2D01G023100 chr7D 90.265 113 11 0 3954 4066 10340272 10340160 9.910000e-32 148.0
54 TraesCS2D01G023100 chr4D 87.143 70 8 1 4202 4270 15773139 15773070 1.320000e-10 78.7
55 TraesCS2D01G023100 chr4D 97.143 35 0 1 3949 3982 52830608 52830574 1.720000e-04 58.4
56 TraesCS2D01G023100 chr6D 87.879 66 7 1 4202 4266 421472151 421472086 4.740000e-10 76.8
57 TraesCS2D01G023100 chr6D 78.095 105 16 6 3953 4053 421472464 421472363 4.780000e-05 60.2
58 TraesCS2D01G023100 chr3B 87.692 65 6 1 4204 4266 828526263 828526327 1.710000e-09 75.0
59 TraesCS2D01G023100 chr5A 86.154 65 8 1 4202 4265 365257364 365257428 7.940000e-08 69.4
60 TraesCS2D01G023100 chr6A 100.000 31 0 0 3951 3981 103960620 103960650 1.720000e-04 58.4
61 TraesCS2D01G023100 chr5D 97.059 34 0 1 3950 3982 340103164 340103197 6.180000e-04 56.5
62 TraesCS2D01G023100 chr5B 100.000 30 0 0 4298 4327 417528951 417528980 6.180000e-04 56.5
63 TraesCS2D01G023100 chr6B 94.444 36 1 1 4235 4269 720461999 720462034 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G023100 chr2D 10431633 10436056 4423 True 8170.000000 8170 100.000000 1 4424 1 chr2D.!!$R1 4423
1 TraesCS2D01G023100 chr2D 10527447 10532546 5099 True 1817.666667 4185 88.160000 33 3956 3 chr2D.!!$R3 3923
2 TraesCS2D01G023100 chr2B 14490059 14491784 1725 True 2109.000000 2109 89.292000 35 1709 1 chr2B.!!$R3 1674
3 TraesCS2D01G023100 chr2B 14503395 14506298 2903 True 1799.000000 1821 89.108500 996 3956 2 chr2B.!!$R10 2960
4 TraesCS2D01G023100 chr2B 14459724 14462987 3263 True 1520.500000 2104 91.247000 35 2425 2 chr2B.!!$R8 2390
5 TraesCS2D01G023100 chr2B 15461065 15464573 3508 False 1472.500000 2780 87.757000 3 3552 2 chr2B.!!$F2 3549
6 TraesCS2D01G023100 chr2B 14350031 14352466 2435 True 1360.500000 2497 89.211500 1 2425 2 chr2B.!!$R6 2424
7 TraesCS2D01G023100 chr2B 14211742 14214245 2503 True 1206.500000 1229 84.917500 996 3434 2 chr2B.!!$R4 2438
8 TraesCS2D01G023100 chr2B 14336212 14336903 691 True 1014.000000 1014 92.928000 2846 3551 1 chr2B.!!$R1 705
9 TraesCS2D01G023100 chr2B 14475575 14477591 2016 True 905.850000 1733 86.302000 2504 3956 2 chr2B.!!$R9 1452
10 TraesCS2D01G023100 chr2B 14404708 14408019 3311 True 891.500000 1271 82.797000 286 3431 2 chr2B.!!$R7 3145
11 TraesCS2D01G023100 chr2B 14613528 14620606 7078 True 848.750000 2211 85.589500 205 3955 4 chr2B.!!$R11 3750
12 TraesCS2D01G023100 chr2B 14343529 14345611 2082 True 820.000000 946 89.266000 38 2137 3 chr2B.!!$R5 2099
13 TraesCS2D01G023100 chr2B 13905344 13912810 7466 False 475.800000 717 86.247600 211 3551 5 chr2B.!!$F1 3340
14 TraesCS2D01G023100 chrUn 345005518 345007103 1585 False 1951.000000 1951 89.424000 2 1541 1 chrUn.!!$F1 1539
15 TraesCS2D01G023100 chrUn 353661907 353663386 1479 True 1777.000000 1777 88.508000 996 2466 1 chrUn.!!$R1 1470
16 TraesCS2D01G023100 chrUn 461722591 461723465 874 True 1205.000000 1205 91.228000 2897 3806 1 chrUn.!!$R2 909
17 TraesCS2D01G023100 chrUn 349801102 349801944 842 False 928.000000 928 86.808000 996 1829 1 chrUn.!!$F2 833
18 TraesCS2D01G023100 chrUn 329537821 329540638 2817 True 895.666667 1622 93.742667 555 2549 3 chrUn.!!$R3 1994
19 TraesCS2D01G023100 chr2A 10843406 10845925 2519 True 1590.500000 1775 89.729000 996 3551 2 chr2A.!!$R3 2555
20 TraesCS2D01G023100 chr2A 10734290 10737784 3494 True 1340.500000 1585 87.172000 1 3552 2 chr2A.!!$R2 3551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 97 1.019278 CGGCAACAGCGAACCTACAT 61.019 55.000 0.00 0.00 0.00 2.29 F
142 150 1.304879 AGCGAGAGGAGCTTCCACT 60.305 57.895 5.21 3.92 43.24 4.00 F
1516 5848 1.673665 CAGGTTGCTCAGGGACAGC 60.674 63.158 0.00 0.00 37.40 4.40 F
2083 7588 1.344438 TGTGCATCAGGAAGAACTCGT 59.656 47.619 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 6794 0.458543 GTCCGCGCTTGAGATCTTCA 60.459 55.000 5.56 0.0 0.0 3.02 R
2036 7541 1.864711 ACATTGTTGAAGTCCGTCGTG 59.135 47.619 0.00 0.0 0.0 4.35 R
2387 7987 1.289380 GGCGTCGGTGAAGAGAACT 59.711 57.895 0.00 0.0 0.0 3.01 R
4074 14040 0.034337 TTCACAGGGCGGACTACAAC 59.966 55.000 0.00 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 3.620300 TACAGCGACCGAACCTGCG 62.620 63.158 0.00 0.00 0.00 5.18
64 68 4.717629 CAGCGACCGAACCTGCGA 62.718 66.667 0.00 0.00 0.00 5.10
65 69 3.986006 AGCGACCGAACCTGCGAA 61.986 61.111 0.00 0.00 0.00 4.70
79 83 4.437959 CGAACGCGCAATCGGCAA 62.438 61.111 20.44 0.00 45.17 4.52
93 97 1.019278 CGGCAACAGCGAACCTACAT 61.019 55.000 0.00 0.00 0.00 2.29
99 103 3.610040 ACAGCGAACCTACATTGATGA 57.390 42.857 0.00 0.00 0.00 2.92
142 150 1.304879 AGCGAGAGGAGCTTCCACT 60.305 57.895 5.21 3.92 43.24 4.00
196 228 2.983930 GAGACACAGCTCTCGCGGT 61.984 63.158 6.13 0.00 45.53 5.68
203 236 2.202878 GCTCTCGCGGTGGCATAA 60.203 61.111 6.13 0.00 39.92 1.90
209 257 1.807981 CGCGGTGGCATAAAGACGA 60.808 57.895 0.00 0.00 39.92 4.20
214 262 2.738643 CGGTGGCATAAAGACGACTCAT 60.739 50.000 0.00 0.00 0.00 2.90
269 318 2.171448 CTGCAGATTACAAGGGTAGGCT 59.829 50.000 8.42 0.00 0.00 4.58
359 415 4.853924 TTCTTTGGGAAGTTGAAGATGC 57.146 40.909 0.00 0.00 34.41 3.91
360 416 3.157087 TCTTTGGGAAGTTGAAGATGCC 58.843 45.455 0.00 0.00 34.41 4.40
390 447 4.438200 CGGTCCGTTGGATTTTAATTCCAG 60.438 45.833 2.08 0.00 34.72 3.86
484 598 8.231692 TCTCAGTTGTTTGTATGGAATTTTGA 57.768 30.769 0.00 0.00 0.00 2.69
518 636 6.012745 AGAAAGTCTGATTTTTAGCCATGGT 58.987 36.000 14.67 2.69 0.00 3.55
567 687 2.014335 GGCACAAGGATGGCAAAATC 57.986 50.000 0.00 0.00 44.34 2.17
590 711 7.151999 TCAGTTTGCAAACACGGATATATTT 57.848 32.000 36.46 14.37 41.30 1.40
674 797 6.337356 ACGAACACAAATTTCCATGAAAACT 58.663 32.000 0.00 0.00 35.11 2.66
712 838 4.374607 GCCTAAAAATCAAACGTTCGTTGC 60.375 41.667 11.24 3.22 0.00 4.17
1201 3556 8.839310 AGTACATTTATCAGCTGAACATATCC 57.161 34.615 22.50 5.81 0.00 2.59
1516 5848 1.673665 CAGGTTGCTCAGGGACAGC 60.674 63.158 0.00 0.00 37.40 4.40
1517 5849 1.845205 AGGTTGCTCAGGGACAGCT 60.845 57.895 0.00 0.00 37.79 4.24
1533 5865 3.507411 ACAGCTGTTTCCCAGTCTACTA 58.493 45.455 15.25 0.00 43.55 1.82
1700 6217 3.357166 TGTGTTTATGGCACGGTTTTC 57.643 42.857 0.00 0.00 39.53 2.29
1702 6219 3.243234 TGTGTTTATGGCACGGTTTTCTG 60.243 43.478 0.00 0.00 39.53 3.02
2036 7541 2.223572 CCCATTGCTCGTTAGATTTGCC 60.224 50.000 0.00 0.00 0.00 4.52
2083 7588 1.344438 TGTGCATCAGGAAGAACTCGT 59.656 47.619 0.00 0.00 0.00 4.18
2387 7987 8.768501 ATGTGTATGGAACTCTAGATGAACTA 57.231 34.615 0.00 0.00 0.00 2.24
2905 8570 1.468520 CAACATACGTTTCCCCTGCTG 59.531 52.381 0.00 0.00 31.13 4.41
2961 8626 4.081087 TGCTAAAGTTGGAAGCTACCCTAG 60.081 45.833 6.63 1.73 37.16 3.02
3361 9047 2.041686 GGTTTTGGTGCGCCGGATA 61.042 57.895 12.58 0.00 37.67 2.59
3400 9086 3.782656 TTAGGGAGTTGTTCTTGGACC 57.217 47.619 0.00 0.00 0.00 4.46
3435 9121 3.073356 AGGAACATTAAACGGTGGGAGAA 59.927 43.478 0.00 0.00 0.00 2.87
3593 11405 3.067833 GAGGTGAAACTAGCTGGTTGAC 58.932 50.000 16.90 15.09 36.74 3.18
3644 11456 1.192146 AGTGCTTAGGGCCTGTTCGA 61.192 55.000 18.53 0.00 40.92 3.71
3661 11473 1.831652 CGACAGCTCCCCAACTCCTT 61.832 60.000 0.00 0.00 0.00 3.36
3672 11484 3.500289 CCCCAACTCCTTGAAATCCTGAA 60.500 47.826 0.00 0.00 0.00 3.02
3673 11485 4.151883 CCCAACTCCTTGAAATCCTGAAA 58.848 43.478 0.00 0.00 0.00 2.69
3674 11486 4.774200 CCCAACTCCTTGAAATCCTGAAAT 59.226 41.667 0.00 0.00 0.00 2.17
3675 11487 5.951747 CCCAACTCCTTGAAATCCTGAAATA 59.048 40.000 0.00 0.00 0.00 1.40
3676 11488 6.608808 CCCAACTCCTTGAAATCCTGAAATAT 59.391 38.462 0.00 0.00 0.00 1.28
3695 11507 9.125026 TGAAATATAATCCAGCTTCTCTTTTCC 57.875 33.333 0.00 0.00 0.00 3.13
3700 11512 3.878778 TCCAGCTTCTCTTTTCCTATGC 58.121 45.455 0.00 0.00 0.00 3.14
3736 11548 3.334583 AAGCTAGCGATCAGAAAACCA 57.665 42.857 9.55 0.00 0.00 3.67
3757 11569 1.227380 CGGTATGCCAGCTCCAGTC 60.227 63.158 0.00 0.00 34.09 3.51
3783 11596 1.523046 GCAATGCATGGGATGGCAA 59.477 52.632 0.00 0.00 44.20 4.52
3815 13174 1.142870 TGATTTCGGCCTATTGGGAGG 59.857 52.381 0.00 0.00 39.88 4.30
3920 13885 6.090223 GGACAAAGCGTTTTCTTTTCTTTTCA 59.910 34.615 0.00 0.00 34.31 2.69
3924 13889 5.709966 AGCGTTTTCTTTTCTTTTCAGTGT 58.290 33.333 0.00 0.00 0.00 3.55
3956 13922 7.822822 TGACTAACAGAGAACTATTTAAAGGGC 59.177 37.037 0.00 0.00 0.00 5.19
3957 13923 6.817140 ACTAACAGAGAACTATTTAAAGGGCG 59.183 38.462 0.00 0.00 0.00 6.13
3958 13924 5.416271 ACAGAGAACTATTTAAAGGGCGA 57.584 39.130 0.00 0.00 0.00 5.54
3959 13925 5.176592 ACAGAGAACTATTTAAAGGGCGAC 58.823 41.667 0.00 0.00 0.00 5.19
3960 13926 4.267928 CAGAGAACTATTTAAAGGGCGACG 59.732 45.833 0.00 0.00 0.00 5.12
3961 13927 2.934553 AGAACTATTTAAAGGGCGACGC 59.065 45.455 12.43 12.43 0.00 5.19
3962 13928 2.685850 ACTATTTAAAGGGCGACGCT 57.314 45.000 20.77 1.65 0.00 5.07
3963 13929 3.806625 ACTATTTAAAGGGCGACGCTA 57.193 42.857 20.77 0.52 0.00 4.26
3964 13930 3.451526 ACTATTTAAAGGGCGACGCTAC 58.548 45.455 20.77 13.11 0.00 3.58
3965 13931 1.283736 ATTTAAAGGGCGACGCTACG 58.716 50.000 20.77 0.00 0.00 3.51
3987 13953 2.202824 CGCCGGCGGATAACAGAA 60.203 61.111 40.50 0.00 35.56 3.02
3988 13954 1.812093 CGCCGGCGGATAACAGAAA 60.812 57.895 40.50 0.00 35.56 2.52
3989 13955 1.363145 CGCCGGCGGATAACAGAAAA 61.363 55.000 40.50 0.00 35.56 2.29
3990 13956 0.806241 GCCGGCGGATAACAGAAAAA 59.194 50.000 33.44 0.00 0.00 1.94
3991 13957 1.202143 GCCGGCGGATAACAGAAAAAG 60.202 52.381 33.44 0.00 0.00 2.27
3992 13958 2.352388 CCGGCGGATAACAGAAAAAGA 58.648 47.619 24.41 0.00 0.00 2.52
3993 13959 2.943033 CCGGCGGATAACAGAAAAAGAT 59.057 45.455 24.41 0.00 0.00 2.40
3994 13960 3.002348 CCGGCGGATAACAGAAAAAGATC 59.998 47.826 24.41 0.00 0.00 2.75
3995 13961 3.302480 CGGCGGATAACAGAAAAAGATCG 60.302 47.826 0.00 0.00 0.00 3.69
3996 13962 3.869246 GGCGGATAACAGAAAAAGATCGA 59.131 43.478 0.00 0.00 0.00 3.59
3997 13963 4.511826 GGCGGATAACAGAAAAAGATCGAT 59.488 41.667 0.00 0.00 0.00 3.59
3998 13964 5.333416 GGCGGATAACAGAAAAAGATCGATC 60.333 44.000 17.91 17.91 0.00 3.69
3999 13965 5.610552 GCGGATAACAGAAAAAGATCGATCG 60.611 44.000 19.33 9.36 0.00 3.69
4000 13966 5.610552 CGGATAACAGAAAAAGATCGATCGC 60.611 44.000 19.33 8.18 0.00 4.58
4001 13967 5.333416 GGATAACAGAAAAAGATCGATCGCC 60.333 44.000 19.33 4.66 0.00 5.54
4002 13968 3.252974 ACAGAAAAAGATCGATCGCCT 57.747 42.857 19.33 7.14 0.00 5.52
4003 13969 2.932614 ACAGAAAAAGATCGATCGCCTG 59.067 45.455 19.33 20.96 0.00 4.85
4004 13970 1.936547 AGAAAAAGATCGATCGCCTGC 59.063 47.619 19.33 10.47 0.00 4.85
4005 13971 1.003438 GAAAAAGATCGATCGCCTGCC 60.003 52.381 19.33 5.54 0.00 4.85
4006 13972 0.179000 AAAAGATCGATCGCCTGCCT 59.821 50.000 19.33 0.00 0.00 4.75
4007 13973 0.531532 AAAGATCGATCGCCTGCCTG 60.532 55.000 19.33 0.00 0.00 4.85
4008 13974 2.356793 GATCGATCGCCTGCCTGG 60.357 66.667 11.09 0.00 39.35 4.45
4017 13983 2.281091 CCTGCCTGGCCATTGGAT 59.719 61.111 17.53 0.00 0.00 3.41
4018 13984 2.131709 CCTGCCTGGCCATTGGATG 61.132 63.158 17.53 6.05 0.00 3.51
4028 13994 3.489391 CATTGGATGGAGCTGCAGA 57.511 52.632 20.43 0.00 0.00 4.26
4029 13995 1.982660 CATTGGATGGAGCTGCAGAT 58.017 50.000 20.43 12.64 0.00 2.90
4030 13996 1.609072 CATTGGATGGAGCTGCAGATG 59.391 52.381 20.43 10.98 0.00 2.90
4031 13997 0.106868 TTGGATGGAGCTGCAGATGG 60.107 55.000 20.43 0.00 0.00 3.51
4032 13998 1.897615 GGATGGAGCTGCAGATGGC 60.898 63.158 20.43 1.85 45.13 4.40
4033 13999 1.897615 GATGGAGCTGCAGATGGCC 60.898 63.158 20.43 10.67 43.89 5.36
4034 14000 3.769369 ATGGAGCTGCAGATGGCCG 62.769 63.158 20.43 0.00 43.89 6.13
4035 14001 4.479993 GGAGCTGCAGATGGCCGT 62.480 66.667 20.43 0.00 43.89 5.68
4036 14002 2.894387 GAGCTGCAGATGGCCGTC 60.894 66.667 20.43 17.85 43.89 4.79
4037 14003 3.382803 GAGCTGCAGATGGCCGTCT 62.383 63.158 22.42 22.42 43.89 4.18
4038 14004 3.200593 GCTGCAGATGGCCGTCTG 61.201 66.667 39.76 39.76 46.59 3.51
4039 14005 2.580815 CTGCAGATGGCCGTCTGA 59.419 61.111 45.25 31.54 46.77 3.27
4040 14006 1.145598 CTGCAGATGGCCGTCTGAT 59.854 57.895 45.25 18.33 46.77 2.90
4041 14007 0.879400 CTGCAGATGGCCGTCTGATC 60.879 60.000 45.25 32.45 46.77 2.92
4042 14008 1.332889 TGCAGATGGCCGTCTGATCT 61.333 55.000 45.25 24.73 46.77 2.75
4043 14009 0.676184 GCAGATGGCCGTCTGATCTA 59.324 55.000 45.25 7.68 46.77 1.98
4044 14010 1.604185 GCAGATGGCCGTCTGATCTAC 60.604 57.143 45.25 29.02 46.77 2.59
4045 14011 1.000283 CAGATGGCCGTCTGATCTACC 60.000 57.143 40.86 7.75 46.77 3.18
4046 14012 0.318762 GATGGCCGTCTGATCTACCC 59.681 60.000 18.25 0.00 0.00 3.69
4047 14013 0.398522 ATGGCCGTCTGATCTACCCA 60.399 55.000 0.00 0.00 0.00 4.51
4048 14014 1.327690 TGGCCGTCTGATCTACCCAC 61.328 60.000 0.00 0.00 0.00 4.61
4049 14015 1.043673 GGCCGTCTGATCTACCCACT 61.044 60.000 0.00 0.00 0.00 4.00
4050 14016 1.688772 GCCGTCTGATCTACCCACTA 58.311 55.000 0.00 0.00 0.00 2.74
4051 14017 2.029623 GCCGTCTGATCTACCCACTAA 58.970 52.381 0.00 0.00 0.00 2.24
4052 14018 2.223758 GCCGTCTGATCTACCCACTAAC 60.224 54.545 0.00 0.00 0.00 2.34
4053 14019 2.361438 CCGTCTGATCTACCCACTAACC 59.639 54.545 0.00 0.00 0.00 2.85
4054 14020 3.021695 CGTCTGATCTACCCACTAACCA 58.978 50.000 0.00 0.00 0.00 3.67
4055 14021 3.637229 CGTCTGATCTACCCACTAACCAT 59.363 47.826 0.00 0.00 0.00 3.55
4056 14022 4.825634 CGTCTGATCTACCCACTAACCATA 59.174 45.833 0.00 0.00 0.00 2.74
4057 14023 5.477291 CGTCTGATCTACCCACTAACCATAT 59.523 44.000 0.00 0.00 0.00 1.78
4058 14024 6.015350 CGTCTGATCTACCCACTAACCATATT 60.015 42.308 0.00 0.00 0.00 1.28
4059 14025 7.471539 CGTCTGATCTACCCACTAACCATATTT 60.472 40.741 0.00 0.00 0.00 1.40
4060 14026 7.657761 GTCTGATCTACCCACTAACCATATTTG 59.342 40.741 0.00 0.00 0.00 2.32
4061 14027 6.296026 TGATCTACCCACTAACCATATTTGC 58.704 40.000 0.00 0.00 0.00 3.68
4062 14028 5.702065 TCTACCCACTAACCATATTTGCA 57.298 39.130 0.00 0.00 0.00 4.08
4063 14029 6.068461 TCTACCCACTAACCATATTTGCAA 57.932 37.500 0.00 0.00 0.00 4.08
4064 14030 5.883673 TCTACCCACTAACCATATTTGCAAC 59.116 40.000 0.00 0.00 0.00 4.17
4065 14031 4.411927 ACCCACTAACCATATTTGCAACA 58.588 39.130 0.00 0.00 0.00 3.33
4066 14032 4.835615 ACCCACTAACCATATTTGCAACAA 59.164 37.500 0.00 0.00 0.00 2.83
4067 14033 5.305644 ACCCACTAACCATATTTGCAACAAA 59.694 36.000 0.00 0.00 0.00 2.83
4068 14034 6.013812 ACCCACTAACCATATTTGCAACAAAT 60.014 34.615 0.00 10.16 0.00 2.32
4069 14035 6.313411 CCCACTAACCATATTTGCAACAAATG 59.687 38.462 14.24 3.22 0.00 2.32
4070 14036 6.873076 CCACTAACCATATTTGCAACAAATGT 59.127 34.615 14.24 6.20 0.00 2.71
4071 14037 7.387397 CCACTAACCATATTTGCAACAAATGTT 59.613 33.333 14.24 11.99 39.12 2.71
4072 14038 8.772705 CACTAACCATATTTGCAACAAATGTTT 58.227 29.630 14.24 0.94 35.83 2.83
4073 14039 9.336171 ACTAACCATATTTGCAACAAATGTTTT 57.664 25.926 14.24 7.05 35.83 2.43
4074 14040 9.596677 CTAACCATATTTGCAACAAATGTTTTG 57.403 29.630 14.24 7.56 35.83 2.44
4075 14041 7.565323 ACCATATTTGCAACAAATGTTTTGT 57.435 28.000 14.24 0.00 35.83 2.83
4076 14042 7.994194 ACCATATTTGCAACAAATGTTTTGTT 58.006 26.923 14.24 11.50 42.75 2.83
4085 14051 4.356289 ACAAATGTTTTGTTGTAGTCCGC 58.644 39.130 0.00 0.00 36.22 5.54
4086 14052 3.636282 AATGTTTTGTTGTAGTCCGCC 57.364 42.857 0.00 0.00 0.00 6.13
4087 14053 1.310904 TGTTTTGTTGTAGTCCGCCC 58.689 50.000 0.00 0.00 0.00 6.13
4088 14054 1.134037 TGTTTTGTTGTAGTCCGCCCT 60.134 47.619 0.00 0.00 0.00 5.19
4089 14055 1.265905 GTTTTGTTGTAGTCCGCCCTG 59.734 52.381 0.00 0.00 0.00 4.45
4090 14056 0.470766 TTTGTTGTAGTCCGCCCTGT 59.529 50.000 0.00 0.00 0.00 4.00
4091 14057 0.250124 TTGTTGTAGTCCGCCCTGTG 60.250 55.000 0.00 0.00 0.00 3.66
4092 14058 1.116536 TGTTGTAGTCCGCCCTGTGA 61.117 55.000 0.00 0.00 0.00 3.58
4093 14059 0.034337 GTTGTAGTCCGCCCTGTGAA 59.966 55.000 0.00 0.00 0.00 3.18
4094 14060 0.320374 TTGTAGTCCGCCCTGTGAAG 59.680 55.000 0.00 0.00 0.00 3.02
4095 14061 1.448013 GTAGTCCGCCCTGTGAAGC 60.448 63.158 0.00 0.00 0.00 3.86
4096 14062 1.911269 TAGTCCGCCCTGTGAAGCA 60.911 57.895 0.00 0.00 0.00 3.91
4097 14063 1.476845 TAGTCCGCCCTGTGAAGCAA 61.477 55.000 0.00 0.00 0.00 3.91
4098 14064 2.281484 TCCGCCCTGTGAAGCAAC 60.281 61.111 0.00 0.00 0.00 4.17
4099 14065 3.365265 CCGCCCTGTGAAGCAACC 61.365 66.667 0.00 0.00 0.00 3.77
4100 14066 2.281761 CGCCCTGTGAAGCAACCT 60.282 61.111 0.00 0.00 0.00 3.50
4101 14067 2.620112 CGCCCTGTGAAGCAACCTG 61.620 63.158 0.00 0.00 0.00 4.00
4102 14068 2.924105 GCCCTGTGAAGCAACCTGC 61.924 63.158 0.00 0.00 45.46 4.85
4114 14080 3.096489 GCAACCTGCTTGTTTCAATCA 57.904 42.857 0.00 0.00 40.96 2.57
4115 14081 2.796593 GCAACCTGCTTGTTTCAATCAC 59.203 45.455 0.00 0.00 40.96 3.06
4116 14082 3.044986 CAACCTGCTTGTTTCAATCACG 58.955 45.455 0.00 0.00 0.00 4.35
4117 14083 1.001378 ACCTGCTTGTTTCAATCACGC 60.001 47.619 0.00 0.00 0.00 5.34
4118 14084 1.321016 CTGCTTGTTTCAATCACGCG 58.679 50.000 3.53 3.53 33.73 6.01
4119 14085 0.940833 TGCTTGTTTCAATCACGCGA 59.059 45.000 15.93 0.00 33.73 5.87
4120 14086 1.332065 TGCTTGTTTCAATCACGCGAA 59.668 42.857 15.93 0.00 33.73 4.70
4121 14087 1.708680 GCTTGTTTCAATCACGCGAAC 59.291 47.619 15.93 5.22 0.00 3.95
4122 14088 2.852901 GCTTGTTTCAATCACGCGAACA 60.853 45.455 15.93 8.32 0.00 3.18
4123 14089 3.358775 CTTGTTTCAATCACGCGAACAA 58.641 40.909 15.93 16.02 37.73 2.83
4124 14090 2.980586 TGTTTCAATCACGCGAACAAG 58.019 42.857 15.93 0.00 0.00 3.16
4125 14091 2.286713 TGTTTCAATCACGCGAACAAGG 60.287 45.455 15.93 0.00 0.00 3.61
4126 14092 1.588674 TTCAATCACGCGAACAAGGT 58.411 45.000 15.93 0.00 0.00 3.50
4127 14093 1.588674 TCAATCACGCGAACAAGGTT 58.411 45.000 15.93 0.00 0.00 3.50
4128 14094 1.944024 TCAATCACGCGAACAAGGTTT 59.056 42.857 15.93 0.00 0.00 3.27
4129 14095 2.356382 TCAATCACGCGAACAAGGTTTT 59.644 40.909 15.93 0.00 0.00 2.43
4130 14096 3.112580 CAATCACGCGAACAAGGTTTTT 58.887 40.909 15.93 0.00 0.00 1.94
4153 14119 4.734398 TTTTTGCAACAGAGGTCATGTT 57.266 36.364 0.00 0.00 41.47 2.71
4160 14126 4.942761 AACAGAGGTCATGTTGCATTTT 57.057 36.364 0.00 0.00 39.36 1.82
4161 14127 4.942761 ACAGAGGTCATGTTGCATTTTT 57.057 36.364 0.00 0.00 0.00 1.94
4180 14146 4.637483 TTTTTCTGCAACAGAGGTCTTG 57.363 40.909 0.00 0.00 41.75 3.02
4181 14147 3.281727 TTTCTGCAACAGAGGTCTTGT 57.718 42.857 0.00 0.00 41.75 3.16
4182 14148 3.281727 TTCTGCAACAGAGGTCTTGTT 57.718 42.857 0.00 0.00 41.75 2.83
4183 14149 2.564771 TCTGCAACAGAGGTCTTGTTG 58.435 47.619 12.40 12.40 43.90 3.33
4187 14153 3.781079 CAACAGAGGTCTTGTTGCAAA 57.219 42.857 0.00 0.00 36.86 3.68
4188 14154 4.108699 CAACAGAGGTCTTGTTGCAAAA 57.891 40.909 0.00 0.00 36.86 2.44
4189 14155 4.493547 CAACAGAGGTCTTGTTGCAAAAA 58.506 39.130 0.00 0.00 36.86 1.94
4229 14195 5.826601 TGTAACAAATGTCTTGTTGCAGA 57.173 34.783 14.48 0.00 45.36 4.26
4230 14196 6.201226 TGTAACAAATGTCTTGTTGCAGAA 57.799 33.333 14.48 0.00 45.36 3.02
4231 14197 6.804677 TGTAACAAATGTCTTGTTGCAGAAT 58.195 32.000 14.48 0.00 45.36 2.40
4232 14198 7.264221 TGTAACAAATGTCTTGTTGCAGAATT 58.736 30.769 14.48 0.00 45.36 2.17
4233 14199 7.763528 TGTAACAAATGTCTTGTTGCAGAATTT 59.236 29.630 14.48 0.00 45.36 1.82
4234 14200 7.614124 AACAAATGTCTTGTTGCAGAATTTT 57.386 28.000 2.21 0.00 40.70 1.82
4235 14201 7.614124 ACAAATGTCTTGTTGCAGAATTTTT 57.386 28.000 0.00 0.00 0.00 1.94
4236 14202 7.687445 ACAAATGTCTTGTTGCAGAATTTTTC 58.313 30.769 0.00 0.00 0.00 2.29
4237 14203 6.515043 AATGTCTTGTTGCAGAATTTTTCG 57.485 33.333 0.00 0.00 34.02 3.46
4238 14204 3.796178 TGTCTTGTTGCAGAATTTTTCGC 59.204 39.130 0.00 0.00 34.02 4.70
4239 14205 3.796178 GTCTTGTTGCAGAATTTTTCGCA 59.204 39.130 0.00 0.00 37.40 5.10
4240 14206 4.267452 GTCTTGTTGCAGAATTTTTCGCAA 59.733 37.500 12.20 12.20 42.38 4.85
4244 14210 3.706802 TGCAGAATTTTTCGCAACAGA 57.293 38.095 0.00 0.00 36.68 3.41
4245 14211 3.631144 TGCAGAATTTTTCGCAACAGAG 58.369 40.909 0.00 0.00 36.68 3.35
4246 14212 3.314913 TGCAGAATTTTTCGCAACAGAGA 59.685 39.130 0.00 0.00 36.68 3.10
4247 14213 4.022935 TGCAGAATTTTTCGCAACAGAGAT 60.023 37.500 0.00 0.00 36.68 2.75
4248 14214 4.556523 GCAGAATTTTTCGCAACAGAGATC 59.443 41.667 0.00 0.00 34.02 2.75
4249 14215 5.618640 GCAGAATTTTTCGCAACAGAGATCT 60.619 40.000 0.00 0.00 34.02 2.75
4250 14216 6.376978 CAGAATTTTTCGCAACAGAGATCTT 58.623 36.000 0.00 0.00 34.02 2.40
4251 14217 6.304922 CAGAATTTTTCGCAACAGAGATCTTG 59.695 38.462 0.00 0.00 34.02 3.02
4252 14218 5.695851 ATTTTTCGCAACAGAGATCTTGT 57.304 34.783 0.00 0.55 0.00 3.16
4253 14219 5.499139 TTTTTCGCAACAGAGATCTTGTT 57.501 34.783 13.96 13.96 0.00 2.83
4254 14220 4.472691 TTTCGCAACAGAGATCTTGTTG 57.527 40.909 28.11 28.11 43.90 3.33
4260 14226 5.428496 CAACAGAGATCTTGTTGCAGAAA 57.572 39.130 24.63 0.00 36.86 2.52
4261 14227 6.010294 CAACAGAGATCTTGTTGCAGAAAT 57.990 37.500 24.63 4.42 36.86 2.17
4262 14228 6.444633 CAACAGAGATCTTGTTGCAGAAATT 58.555 36.000 24.63 4.27 36.86 1.82
4263 14229 6.645790 ACAGAGATCTTGTTGCAGAAATTT 57.354 33.333 0.00 0.00 0.00 1.82
4264 14230 7.047460 ACAGAGATCTTGTTGCAGAAATTTT 57.953 32.000 0.00 0.00 0.00 1.82
4265 14231 8.169977 ACAGAGATCTTGTTGCAGAAATTTTA 57.830 30.769 0.00 0.00 0.00 1.52
4266 14232 8.078596 ACAGAGATCTTGTTGCAGAAATTTTAC 58.921 33.333 0.00 0.00 0.00 2.01
4267 14233 8.077991 CAGAGATCTTGTTGCAGAAATTTTACA 58.922 33.333 0.00 0.00 0.00 2.41
4268 14234 8.632679 AGAGATCTTGTTGCAGAAATTTTACAA 58.367 29.630 0.00 0.00 0.00 2.41
4269 14235 9.248291 GAGATCTTGTTGCAGAAATTTTACAAA 57.752 29.630 0.00 0.00 0.00 2.83
4270 14236 9.252962 AGATCTTGTTGCAGAAATTTTACAAAG 57.747 29.630 0.00 0.00 0.00 2.77
4271 14237 7.232945 TCTTGTTGCAGAAATTTTACAAAGC 57.767 32.000 0.00 0.00 0.00 3.51
4272 14238 7.041107 TCTTGTTGCAGAAATTTTACAAAGCT 58.959 30.769 0.00 0.00 0.00 3.74
4273 14239 7.548780 TCTTGTTGCAGAAATTTTACAAAGCTT 59.451 29.630 0.00 0.00 0.00 3.74
4274 14240 7.608308 TGTTGCAGAAATTTTACAAAGCTTT 57.392 28.000 5.69 5.69 0.00 3.51
4275 14241 8.038492 TGTTGCAGAAATTTTACAAAGCTTTT 57.962 26.923 9.53 4.13 0.00 2.27
4276 14242 8.510505 TGTTGCAGAAATTTTACAAAGCTTTTT 58.489 25.926 9.53 5.95 0.00 1.94
4313 14279 9.778741 AGATCTTTATATATTTCCGCAACAAGA 57.221 29.630 0.00 0.00 0.00 3.02
4316 14282 9.778741 TCTTTATATATTTCCGCAACAAGATCT 57.221 29.630 0.00 0.00 0.00 2.75
4318 14284 9.778741 TTTATATATTTCCGCAACAAGATCTCT 57.221 29.630 0.00 0.00 0.00 3.10
4319 14285 5.998454 ATATTTCCGCAACAAGATCTCTG 57.002 39.130 0.00 0.00 0.00 3.35
4320 14286 2.839486 TTCCGCAACAAGATCTCTGT 57.161 45.000 0.00 0.00 0.00 3.41
4321 14287 2.839486 TCCGCAACAAGATCTCTGTT 57.161 45.000 13.96 13.96 0.00 3.16
4322 14288 2.416747 TCCGCAACAAGATCTCTGTTG 58.583 47.619 28.11 28.11 43.90 3.33
4327 14293 4.472691 CAACAAGATCTCTGTTGCGAAA 57.527 40.909 24.63 0.00 36.86 3.46
4328 14294 4.847633 CAACAAGATCTCTGTTGCGAAAA 58.152 39.130 24.63 0.00 36.86 2.29
4329 14295 5.273170 CAACAAGATCTCTGTTGCGAAAAA 58.727 37.500 24.63 0.00 36.86 1.94
4347 14313 3.733443 AAAAGAATCTGCAACACACCC 57.267 42.857 0.00 0.00 0.00 4.61
4348 14314 2.664402 AAGAATCTGCAACACACCCT 57.336 45.000 0.00 0.00 0.00 4.34
4349 14315 2.664402 AGAATCTGCAACACACCCTT 57.336 45.000 0.00 0.00 0.00 3.95
4350 14316 2.949447 AGAATCTGCAACACACCCTTT 58.051 42.857 0.00 0.00 0.00 3.11
4351 14317 2.624838 AGAATCTGCAACACACCCTTTG 59.375 45.455 0.00 0.00 0.00 2.77
4352 14318 2.071778 ATCTGCAACACACCCTTTGT 57.928 45.000 0.00 0.00 39.97 2.83
4353 14319 1.846007 TCTGCAACACACCCTTTGTT 58.154 45.000 0.00 0.00 35.67 2.83
4357 14323 1.925229 CAACACACCCTTTGTTGCAG 58.075 50.000 2.50 0.00 45.36 4.41
4358 14324 1.476085 CAACACACCCTTTGTTGCAGA 59.524 47.619 2.50 0.00 45.36 4.26
4359 14325 1.846007 ACACACCCTTTGTTGCAGAA 58.154 45.000 0.00 0.00 35.67 3.02
4360 14326 2.175202 ACACACCCTTTGTTGCAGAAA 58.825 42.857 0.00 0.00 35.67 2.52
4361 14327 2.564947 ACACACCCTTTGTTGCAGAAAA 59.435 40.909 0.00 0.00 35.67 2.29
4362 14328 3.007398 ACACACCCTTTGTTGCAGAAAAA 59.993 39.130 0.00 0.00 35.67 1.94
4379 14345 2.593346 AAAAGGCAATTGCAACACGA 57.407 40.000 30.32 0.00 44.36 4.35
4380 14346 2.818130 AAAGGCAATTGCAACACGAT 57.182 40.000 30.32 7.42 44.36 3.73
4381 14347 2.818130 AAGGCAATTGCAACACGATT 57.182 40.000 30.32 10.79 44.36 3.34
4383 14349 1.070038 GGCAATTGCAACACGATTGG 58.930 50.000 30.32 0.00 46.47 3.16
4384 14350 1.336702 GGCAATTGCAACACGATTGGA 60.337 47.619 30.32 0.00 46.47 3.53
4385 14351 1.987770 GCAATTGCAACACGATTGGAG 59.012 47.619 25.36 0.00 46.47 3.86
4386 14352 2.598589 CAATTGCAACACGATTGGAGG 58.401 47.619 0.00 0.00 43.79 4.30
4387 14353 2.198827 ATTGCAACACGATTGGAGGA 57.801 45.000 0.00 0.00 0.00 3.71
4388 14354 1.522668 TTGCAACACGATTGGAGGAG 58.477 50.000 0.00 0.00 0.00 3.69
4389 14355 0.321564 TGCAACACGATTGGAGGAGG 60.322 55.000 0.00 0.00 0.00 4.30
4390 14356 0.321653 GCAACACGATTGGAGGAGGT 60.322 55.000 0.00 0.00 0.00 3.85
4391 14357 1.882352 GCAACACGATTGGAGGAGGTT 60.882 52.381 0.00 0.00 0.00 3.50
4392 14358 2.504367 CAACACGATTGGAGGAGGTTT 58.496 47.619 0.00 0.00 0.00 3.27
4393 14359 3.670625 CAACACGATTGGAGGAGGTTTA 58.329 45.455 0.00 0.00 0.00 2.01
4394 14360 4.261801 CAACACGATTGGAGGAGGTTTAT 58.738 43.478 0.00 0.00 0.00 1.40
4395 14361 3.873910 ACACGATTGGAGGAGGTTTATG 58.126 45.455 0.00 0.00 0.00 1.90
4396 14362 3.517901 ACACGATTGGAGGAGGTTTATGA 59.482 43.478 0.00 0.00 0.00 2.15
4397 14363 4.122776 CACGATTGGAGGAGGTTTATGAG 58.877 47.826 0.00 0.00 0.00 2.90
4398 14364 4.030913 ACGATTGGAGGAGGTTTATGAGA 58.969 43.478 0.00 0.00 0.00 3.27
4399 14365 4.100189 ACGATTGGAGGAGGTTTATGAGAG 59.900 45.833 0.00 0.00 0.00 3.20
4400 14366 3.914426 TTGGAGGAGGTTTATGAGAGC 57.086 47.619 0.00 0.00 0.00 4.09
4401 14367 1.757118 TGGAGGAGGTTTATGAGAGCG 59.243 52.381 0.00 0.00 0.00 5.03
4402 14368 1.757699 GGAGGAGGTTTATGAGAGCGT 59.242 52.381 0.00 0.00 0.00 5.07
4403 14369 2.168728 GGAGGAGGTTTATGAGAGCGTT 59.831 50.000 0.00 0.00 0.00 4.84
4404 14370 3.449632 GAGGAGGTTTATGAGAGCGTTC 58.550 50.000 0.00 0.00 0.00 3.95
4405 14371 3.100671 AGGAGGTTTATGAGAGCGTTCT 58.899 45.455 0.00 0.00 36.01 3.01
4406 14372 3.118956 AGGAGGTTTATGAGAGCGTTCTG 60.119 47.826 6.48 0.00 32.53 3.02
4407 14373 3.368531 GGAGGTTTATGAGAGCGTTCTGT 60.369 47.826 6.48 0.00 32.53 3.41
4408 14374 4.142227 GGAGGTTTATGAGAGCGTTCTGTA 60.142 45.833 6.48 0.00 32.53 2.74
4409 14375 5.452077 GGAGGTTTATGAGAGCGTTCTGTAT 60.452 44.000 6.48 3.74 32.53 2.29
4410 14376 5.352284 AGGTTTATGAGAGCGTTCTGTATG 58.648 41.667 6.48 0.00 32.53 2.39
4411 14377 5.127194 AGGTTTATGAGAGCGTTCTGTATGA 59.873 40.000 6.48 0.00 32.53 2.15
4412 14378 5.986135 GGTTTATGAGAGCGTTCTGTATGAT 59.014 40.000 6.48 0.00 32.53 2.45
4413 14379 6.074088 GGTTTATGAGAGCGTTCTGTATGATG 60.074 42.308 6.48 0.00 32.53 3.07
4414 14380 2.814269 TGAGAGCGTTCTGTATGATGC 58.186 47.619 6.48 0.00 32.53 3.91
4415 14381 1.783711 GAGAGCGTTCTGTATGATGCG 59.216 52.381 6.48 0.00 32.53 4.73
4416 14382 1.405463 AGAGCGTTCTGTATGATGCGA 59.595 47.619 0.00 0.00 33.40 5.10
4417 14383 2.035193 AGAGCGTTCTGTATGATGCGAT 59.965 45.455 0.00 0.00 33.40 4.58
4418 14384 2.130395 AGCGTTCTGTATGATGCGATG 58.870 47.619 0.00 0.00 33.40 3.84
4419 14385 1.397693 GCGTTCTGTATGATGCGATGC 60.398 52.381 0.00 0.00 0.00 3.91
4420 14386 2.130395 CGTTCTGTATGATGCGATGCT 58.870 47.619 0.00 0.00 0.00 3.79
4421 14387 2.154580 CGTTCTGTATGATGCGATGCTC 59.845 50.000 0.00 0.00 0.00 4.26
4422 14388 3.388308 GTTCTGTATGATGCGATGCTCT 58.612 45.455 0.00 0.00 0.00 4.09
4423 14389 3.022607 TCTGTATGATGCGATGCTCTG 57.977 47.619 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 51 4.717629 TCGCAGGTTCGGTCGCTG 62.718 66.667 0.00 0.00 0.00 5.18
63 67 2.869702 GTTGCCGATTGCGCGTTC 60.870 61.111 8.43 0.34 45.60 3.95
64 68 3.593551 CTGTTGCCGATTGCGCGTT 62.594 57.895 8.43 0.00 45.60 4.84
65 69 4.088762 CTGTTGCCGATTGCGCGT 62.089 61.111 8.43 0.00 45.60 6.01
73 77 1.373748 GTAGGTTCGCTGTTGCCGA 60.374 57.895 0.00 0.00 35.36 5.54
79 83 3.525537 CTCATCAATGTAGGTTCGCTGT 58.474 45.455 0.00 0.00 0.00 4.40
93 97 1.451504 CTATGGGCCGGCTCATCAA 59.548 57.895 44.00 27.38 38.28 2.57
196 228 2.279741 GCATGAGTCGTCTTTATGCCA 58.720 47.619 16.25 0.00 37.96 4.92
199 232 3.935203 ACCTTGCATGAGTCGTCTTTATG 59.065 43.478 0.00 4.38 0.00 1.90
203 236 2.093973 CCTACCTTGCATGAGTCGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
209 257 1.609783 GGCCCTACCTTGCATGAGT 59.390 57.895 0.00 0.53 34.51 3.41
214 262 2.685743 TAGCGGCCCTACCTTGCA 60.686 61.111 0.00 0.00 35.61 4.08
247 295 2.565841 CCTACCCTTGTAATCTGCAGC 58.434 52.381 9.47 0.00 0.00 5.25
269 318 2.126882 CCTCATCCCACTGGTCCAATA 58.873 52.381 0.00 0.00 0.00 1.90
343 399 0.960364 GCGGCATCTTCAACTTCCCA 60.960 55.000 0.00 0.00 0.00 4.37
551 671 4.634199 CAAACTGATTTTGCCATCCTTGT 58.366 39.130 0.00 0.00 38.37 3.16
567 687 7.201427 CCAAAATATATCCGTGTTTGCAAACTG 60.201 37.037 35.09 27.61 39.59 3.16
681 807 7.961325 ACGTTTGATTTTTAGGCATGAAAAT 57.039 28.000 12.87 12.87 37.33 1.82
700 826 2.418628 CCCAGATATGCAACGAACGTTT 59.581 45.455 9.87 0.00 36.00 3.60
731 858 4.018050 ACCAACATTTCTTCTGGAGGCTAT 60.018 41.667 0.00 0.00 32.97 2.97
1201 3556 5.640357 TGTACTACTTGCCGGTTGAAAATAG 59.360 40.000 1.90 0.00 0.00 1.73
1517 5849 3.438183 GAGGGTAGTAGACTGGGAAACA 58.562 50.000 0.00 0.00 0.00 2.83
1625 6118 8.637986 GGATTGGACCATGCATTTAGTTTAATA 58.362 33.333 0.00 0.00 0.00 0.98
1675 6181 2.095466 ACCGTGCCATAAACACAATTCG 60.095 45.455 0.00 0.00 37.93 3.34
1700 6217 8.559536 ACAATGAAACATGTCAGTTAAGTACAG 58.440 33.333 0.00 0.00 0.00 2.74
1748 6794 0.458543 GTCCGCGCTTGAGATCTTCA 60.459 55.000 5.56 0.00 0.00 3.02
1959 7464 3.849911 TGAACCATCTTGCTTCTAGTCG 58.150 45.455 0.00 0.00 0.00 4.18
2036 7541 1.864711 ACATTGTTGAAGTCCGTCGTG 59.135 47.619 0.00 0.00 0.00 4.35
2083 7588 3.869912 GCTCAATTACCTTGCCAGTCTCA 60.870 47.826 0.00 0.00 34.66 3.27
2148 7656 9.527157 TTTCATATCTTAAAACCCATCAACTCA 57.473 29.630 0.00 0.00 0.00 3.41
2278 7878 1.000060 CATTGTTTGGCTCCCACACAG 60.000 52.381 3.76 0.00 43.69 3.66
2306 7906 2.413453 GACTTTAGCAAGCACTTCTCGG 59.587 50.000 0.00 0.00 32.57 4.63
2387 7987 1.289380 GGCGTCGGTGAAGAGAACT 59.711 57.895 0.00 0.00 0.00 3.01
2905 8570 2.159517 GGTGATCTTTTCATCCACACGC 60.160 50.000 0.00 0.00 36.54 5.34
2961 8626 2.864968 ACGACGCTGACTGAACTAATC 58.135 47.619 0.00 0.00 0.00 1.75
3361 9047 5.048013 CCCTAATTTGCTTTTTCTTCCGACT 60.048 40.000 0.00 0.00 0.00 4.18
3400 9086 7.485913 CGTTTAATGTTCCTCAATCATGAAAGG 59.514 37.037 13.41 13.41 34.49 3.11
3561 11367 9.528018 CAGCTAGTTTCACCTCAAAAATAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
3562 11368 8.141268 CCAGCTAGTTTCACCTCAAAAATAAAA 58.859 33.333 0.00 0.00 0.00 1.52
3566 11372 5.140454 ACCAGCTAGTTTCACCTCAAAAAT 58.860 37.500 0.00 0.00 0.00 1.82
3644 11456 0.768221 TCAAGGAGTTGGGGAGCTGT 60.768 55.000 0.00 0.00 34.09 4.40
3661 11473 9.071276 GAAGCTGGATTATATTTCAGGATTTCA 57.929 33.333 5.31 0.00 0.00 2.69
3673 11485 9.956640 CATAGGAAAAGAGAAGCTGGATTATAT 57.043 33.333 0.00 0.00 0.00 0.86
3674 11486 7.880195 GCATAGGAAAAGAGAAGCTGGATTATA 59.120 37.037 0.00 0.00 0.00 0.98
3675 11487 6.714356 GCATAGGAAAAGAGAAGCTGGATTAT 59.286 38.462 0.00 0.00 0.00 1.28
3676 11488 6.058183 GCATAGGAAAAGAGAAGCTGGATTA 58.942 40.000 0.00 0.00 0.00 1.75
3695 11507 1.065199 TCACTTGGGAAGCTGGCATAG 60.065 52.381 0.00 0.00 0.00 2.23
3700 11512 0.600057 GCTTTCACTTGGGAAGCTGG 59.400 55.000 0.14 0.00 0.00 4.85
3736 11548 0.107456 CTGGAGCTGGCATACCGAAT 59.893 55.000 0.00 0.00 39.70 3.34
3757 11569 0.744874 CCCATGCATTGCCAGAGAAG 59.255 55.000 6.12 0.00 0.00 2.85
3783 11596 3.243737 GGCCGAAATCAACTCAAAAAGGT 60.244 43.478 0.00 0.00 0.00 3.50
3815 13174 2.369394 CCAAGTTTGGCCTATCCTCAC 58.631 52.381 3.32 0.00 42.21 3.51
3920 13885 6.879458 AGTTCTCTGTTAGTCAAAAACACACT 59.121 34.615 0.00 0.00 33.45 3.55
3970 13936 1.363145 TTTTCTGTTATCCGCCGGCG 61.363 55.000 41.00 41.00 39.44 6.46
3971 13937 0.806241 TTTTTCTGTTATCCGCCGGC 59.194 50.000 19.07 19.07 0.00 6.13
3972 13938 2.352388 TCTTTTTCTGTTATCCGCCGG 58.648 47.619 0.00 0.00 0.00 6.13
3973 13939 3.302480 CGATCTTTTTCTGTTATCCGCCG 60.302 47.826 0.00 0.00 0.00 6.46
3974 13940 3.869246 TCGATCTTTTTCTGTTATCCGCC 59.131 43.478 0.00 0.00 0.00 6.13
3975 13941 5.610552 CGATCGATCTTTTTCTGTTATCCGC 60.611 44.000 22.43 0.00 0.00 5.54
3976 13942 5.610552 GCGATCGATCTTTTTCTGTTATCCG 60.611 44.000 21.57 5.81 0.00 4.18
3977 13943 5.333416 GGCGATCGATCTTTTTCTGTTATCC 60.333 44.000 21.57 0.00 0.00 2.59
3978 13944 5.463724 AGGCGATCGATCTTTTTCTGTTATC 59.536 40.000 21.57 0.00 0.00 1.75
3979 13945 5.235186 CAGGCGATCGATCTTTTTCTGTTAT 59.765 40.000 21.57 0.00 0.00 1.89
3980 13946 4.566759 CAGGCGATCGATCTTTTTCTGTTA 59.433 41.667 21.57 0.00 0.00 2.41
3981 13947 3.372206 CAGGCGATCGATCTTTTTCTGTT 59.628 43.478 21.57 0.00 0.00 3.16
3982 13948 2.932614 CAGGCGATCGATCTTTTTCTGT 59.067 45.455 21.57 0.00 0.00 3.41
3983 13949 2.286067 GCAGGCGATCGATCTTTTTCTG 60.286 50.000 21.57 19.53 0.00 3.02
3984 13950 1.936547 GCAGGCGATCGATCTTTTTCT 59.063 47.619 21.57 9.72 0.00 2.52
3985 13951 1.003438 GGCAGGCGATCGATCTTTTTC 60.003 52.381 21.57 9.09 0.00 2.29
3986 13952 1.017387 GGCAGGCGATCGATCTTTTT 58.983 50.000 21.57 3.59 0.00 1.94
3987 13953 0.179000 AGGCAGGCGATCGATCTTTT 59.821 50.000 21.57 5.33 0.00 2.27
3988 13954 0.531532 CAGGCAGGCGATCGATCTTT 60.532 55.000 21.57 5.68 0.00 2.52
3989 13955 1.068753 CAGGCAGGCGATCGATCTT 59.931 57.895 21.57 6.03 0.00 2.40
3990 13956 2.733301 CAGGCAGGCGATCGATCT 59.267 61.111 21.57 12.44 0.00 2.75
3991 13957 2.356793 CCAGGCAGGCGATCGATC 60.357 66.667 21.57 15.68 0.00 3.69
4000 13966 2.131709 CATCCAATGGCCAGGCAGG 61.132 63.158 15.19 10.44 41.84 4.85
4001 13967 2.131709 CCATCCAATGGCCAGGCAG 61.132 63.158 15.19 3.64 44.70 4.85
4002 13968 2.042741 CCATCCAATGGCCAGGCA 60.043 61.111 15.19 5.03 44.70 4.75
4010 13976 1.609072 CATCTGCAGCTCCATCCAATG 59.391 52.381 9.47 0.00 0.00 2.82
4011 13977 1.478837 CCATCTGCAGCTCCATCCAAT 60.479 52.381 9.47 0.00 0.00 3.16
4012 13978 0.106868 CCATCTGCAGCTCCATCCAA 60.107 55.000 9.47 0.00 0.00 3.53
4013 13979 1.530283 CCATCTGCAGCTCCATCCA 59.470 57.895 9.47 0.00 0.00 3.41
4014 13980 1.897615 GCCATCTGCAGCTCCATCC 60.898 63.158 9.47 0.00 40.77 3.51
4015 13981 1.897615 GGCCATCTGCAGCTCCATC 60.898 63.158 9.47 0.00 43.89 3.51
4016 13982 2.195139 GGCCATCTGCAGCTCCAT 59.805 61.111 9.47 0.00 43.89 3.41
4017 13983 4.478371 CGGCCATCTGCAGCTCCA 62.478 66.667 9.47 0.00 43.89 3.86
4018 13984 4.479993 ACGGCCATCTGCAGCTCC 62.480 66.667 9.47 6.10 43.89 4.70
4019 13985 2.894387 GACGGCCATCTGCAGCTC 60.894 66.667 9.47 0.00 43.89 4.09
4020 13986 3.397439 AGACGGCCATCTGCAGCT 61.397 61.111 9.47 0.00 43.89 4.24
4021 13987 2.937379 ATCAGACGGCCATCTGCAGC 62.937 60.000 23.98 0.00 44.94 5.25
4022 13988 0.879400 GATCAGACGGCCATCTGCAG 60.879 60.000 23.98 7.63 44.94 4.41
4023 13989 1.144716 GATCAGACGGCCATCTGCA 59.855 57.895 23.98 13.07 44.94 4.41
4024 13990 0.676184 TAGATCAGACGGCCATCTGC 59.324 55.000 23.98 11.03 44.94 4.26
4025 13991 1.000283 GGTAGATCAGACGGCCATCTG 60.000 57.143 22.88 22.88 46.40 2.90
4026 13992 1.333177 GGTAGATCAGACGGCCATCT 58.667 55.000 2.24 0.00 0.00 2.90
4027 13993 0.318762 GGGTAGATCAGACGGCCATC 59.681 60.000 2.24 0.00 0.00 3.51
4028 13994 0.398522 TGGGTAGATCAGACGGCCAT 60.399 55.000 2.24 0.00 0.00 4.40
4029 13995 1.001120 TGGGTAGATCAGACGGCCA 59.999 57.895 2.24 0.00 0.00 5.36
4030 13996 1.043673 AGTGGGTAGATCAGACGGCC 61.044 60.000 0.00 0.00 0.00 6.13
4031 13997 1.688772 TAGTGGGTAGATCAGACGGC 58.311 55.000 0.00 0.00 0.00 5.68
4032 13998 2.361438 GGTTAGTGGGTAGATCAGACGG 59.639 54.545 0.00 0.00 0.00 4.79
4033 13999 3.021695 TGGTTAGTGGGTAGATCAGACG 58.978 50.000 0.00 0.00 0.00 4.18
4034 14000 6.919775 ATATGGTTAGTGGGTAGATCAGAC 57.080 41.667 0.00 0.00 0.00 3.51
4035 14001 7.689313 GCAAATATGGTTAGTGGGTAGATCAGA 60.689 40.741 0.00 0.00 0.00 3.27
4036 14002 6.428159 GCAAATATGGTTAGTGGGTAGATCAG 59.572 42.308 0.00 0.00 0.00 2.90
4037 14003 6.126623 TGCAAATATGGTTAGTGGGTAGATCA 60.127 38.462 0.00 0.00 0.00 2.92
4038 14004 6.296026 TGCAAATATGGTTAGTGGGTAGATC 58.704 40.000 0.00 0.00 0.00 2.75
4039 14005 6.260700 TGCAAATATGGTTAGTGGGTAGAT 57.739 37.500 0.00 0.00 0.00 1.98
4040 14006 5.702065 TGCAAATATGGTTAGTGGGTAGA 57.298 39.130 0.00 0.00 0.00 2.59
4041 14007 5.650266 TGTTGCAAATATGGTTAGTGGGTAG 59.350 40.000 0.00 0.00 0.00 3.18
4042 14008 5.571285 TGTTGCAAATATGGTTAGTGGGTA 58.429 37.500 0.00 0.00 0.00 3.69
4043 14009 4.411927 TGTTGCAAATATGGTTAGTGGGT 58.588 39.130 0.00 0.00 0.00 4.51
4044 14010 5.398603 TTGTTGCAAATATGGTTAGTGGG 57.601 39.130 0.00 0.00 0.00 4.61
4045 14011 6.873076 ACATTTGTTGCAAATATGGTTAGTGG 59.127 34.615 0.00 0.00 0.00 4.00
4046 14012 7.887996 ACATTTGTTGCAAATATGGTTAGTG 57.112 32.000 0.00 0.00 0.00 2.74
4047 14013 8.900983 AAACATTTGTTGCAAATATGGTTAGT 57.099 26.923 14.72 0.00 38.44 2.24
4048 14014 9.596677 CAAAACATTTGTTGCAAATATGGTTAG 57.403 29.630 15.96 6.51 38.44 2.34
4049 14015 9.113838 ACAAAACATTTGTTGCAAATATGGTTA 57.886 25.926 15.96 0.00 38.44 2.85
4050 14016 7.994194 ACAAAACATTTGTTGCAAATATGGTT 58.006 26.923 0.00 7.40 38.44 3.67
4051 14017 7.565323 ACAAAACATTTGTTGCAAATATGGT 57.435 28.000 0.00 0.71 38.44 3.55
4062 14028 4.801516 GCGGACTACAACAAAACATTTGTT 59.198 37.500 13.79 13.79 42.75 2.83
4063 14029 4.356289 GCGGACTACAACAAAACATTTGT 58.644 39.130 2.76 2.76 39.31 2.83
4064 14030 3.733727 GGCGGACTACAACAAAACATTTG 59.266 43.478 1.47 1.47 0.00 2.32
4065 14031 3.243602 GGGCGGACTACAACAAAACATTT 60.244 43.478 0.00 0.00 0.00 2.32
4066 14032 2.295070 GGGCGGACTACAACAAAACATT 59.705 45.455 0.00 0.00 0.00 2.71
4067 14033 1.883926 GGGCGGACTACAACAAAACAT 59.116 47.619 0.00 0.00 0.00 2.71
4068 14034 1.134037 AGGGCGGACTACAACAAAACA 60.134 47.619 0.00 0.00 0.00 2.83
4069 14035 1.265905 CAGGGCGGACTACAACAAAAC 59.734 52.381 0.00 0.00 0.00 2.43
4070 14036 1.134037 ACAGGGCGGACTACAACAAAA 60.134 47.619 0.00 0.00 0.00 2.44
4071 14037 0.470766 ACAGGGCGGACTACAACAAA 59.529 50.000 0.00 0.00 0.00 2.83
4072 14038 0.250124 CACAGGGCGGACTACAACAA 60.250 55.000 0.00 0.00 0.00 2.83
4073 14039 1.116536 TCACAGGGCGGACTACAACA 61.117 55.000 0.00 0.00 0.00 3.33
4074 14040 0.034337 TTCACAGGGCGGACTACAAC 59.966 55.000 0.00 0.00 0.00 3.32
4075 14041 0.320374 CTTCACAGGGCGGACTACAA 59.680 55.000 0.00 0.00 0.00 2.41
4076 14042 1.972198 CTTCACAGGGCGGACTACA 59.028 57.895 0.00 0.00 0.00 2.74
4077 14043 1.448013 GCTTCACAGGGCGGACTAC 60.448 63.158 0.00 0.00 0.00 2.73
4078 14044 1.476845 TTGCTTCACAGGGCGGACTA 61.477 55.000 0.00 0.00 0.00 2.59
4079 14045 2.818169 TTGCTTCACAGGGCGGACT 61.818 57.895 0.00 0.00 0.00 3.85
4080 14046 2.281484 TTGCTTCACAGGGCGGAC 60.281 61.111 0.00 0.00 0.00 4.79
4081 14047 2.281484 GTTGCTTCACAGGGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
4082 14048 3.365265 GGTTGCTTCACAGGGCGG 61.365 66.667 0.00 0.00 0.00 6.13
4083 14049 2.281761 AGGTTGCTTCACAGGGCG 60.282 61.111 0.00 0.00 0.00 6.13
4084 14050 2.924105 GCAGGTTGCTTCACAGGGC 61.924 63.158 0.00 0.00 40.96 5.19
4085 14051 3.359002 GCAGGTTGCTTCACAGGG 58.641 61.111 0.00 0.00 40.96 4.45
4094 14060 2.796593 GTGATTGAAACAAGCAGGTTGC 59.203 45.455 12.41 0.00 45.46 4.17
4095 14061 3.044986 CGTGATTGAAACAAGCAGGTTG 58.955 45.455 10.92 10.92 42.48 3.77
4096 14062 2.543653 GCGTGATTGAAACAAGCAGGTT 60.544 45.455 18.40 0.00 41.01 3.50
4097 14063 1.001378 GCGTGATTGAAACAAGCAGGT 60.001 47.619 18.40 0.00 41.01 4.00
4098 14064 1.689959 GCGTGATTGAAACAAGCAGG 58.310 50.000 14.86 14.86 41.01 4.85
4099 14065 1.069973 TCGCGTGATTGAAACAAGCAG 60.070 47.619 12.88 6.54 41.29 4.24
4100 14066 0.940833 TCGCGTGATTGAAACAAGCA 59.059 45.000 12.88 0.00 41.29 3.91
4101 14067 1.708680 GTTCGCGTGATTGAAACAAGC 59.291 47.619 5.77 3.50 38.82 4.01
4102 14068 2.980586 TGTTCGCGTGATTGAAACAAG 58.019 42.857 5.77 0.00 0.00 3.16
4103 14069 3.358775 CTTGTTCGCGTGATTGAAACAA 58.641 40.909 16.06 16.06 0.00 2.83
4104 14070 2.286713 CCTTGTTCGCGTGATTGAAACA 60.287 45.455 5.77 4.39 0.00 2.83
4105 14071 2.286772 ACCTTGTTCGCGTGATTGAAAC 60.287 45.455 5.77 1.28 0.00 2.78
4106 14072 1.944024 ACCTTGTTCGCGTGATTGAAA 59.056 42.857 5.77 0.00 0.00 2.69
4107 14073 1.588674 ACCTTGTTCGCGTGATTGAA 58.411 45.000 5.77 0.00 0.00 2.69
4108 14074 1.588674 AACCTTGTTCGCGTGATTGA 58.411 45.000 5.77 0.00 0.00 2.57
4109 14075 2.399396 AAACCTTGTTCGCGTGATTG 57.601 45.000 5.77 0.00 0.00 2.67
4110 14076 3.430333 AAAAACCTTGTTCGCGTGATT 57.570 38.095 5.77 0.00 0.00 2.57
4132 14098 4.431809 CAACATGACCTCTGTTGCAAAAA 58.568 39.130 0.00 0.00 44.78 1.94
4133 14099 4.044336 CAACATGACCTCTGTTGCAAAA 57.956 40.909 0.00 0.00 44.78 2.44
4134 14100 3.713858 CAACATGACCTCTGTTGCAAA 57.286 42.857 0.00 0.00 44.78 3.68
4139 14105 4.942761 AAAATGCAACATGACCTCTGTT 57.057 36.364 0.00 0.00 37.31 3.16
4140 14106 4.942761 AAAAATGCAACATGACCTCTGT 57.057 36.364 0.00 0.00 0.00 3.41
4159 14125 4.016444 ACAAGACCTCTGTTGCAGAAAAA 58.984 39.130 0.37 0.00 40.18 1.94
4160 14126 3.620488 ACAAGACCTCTGTTGCAGAAAA 58.380 40.909 0.37 0.00 40.18 2.29
4161 14127 3.281727 ACAAGACCTCTGTTGCAGAAA 57.718 42.857 0.37 0.00 40.18 2.52
4162 14128 2.945008 CAACAAGACCTCTGTTGCAGAA 59.055 45.455 3.02 0.00 40.18 3.02
4163 14129 2.564771 CAACAAGACCTCTGTTGCAGA 58.435 47.619 3.02 0.00 38.25 4.26
4167 14133 3.781079 TTTGCAACAAGACCTCTGTTG 57.219 42.857 0.00 10.57 43.90 3.33
4168 14134 4.799564 TTTTTGCAACAAGACCTCTGTT 57.200 36.364 0.00 0.00 0.00 3.16
4203 14169 7.600375 TCTGCAACAAGACATTTGTTACAAAAA 59.400 29.630 14.70 0.00 40.30 1.94
4204 14170 7.093354 TCTGCAACAAGACATTTGTTACAAAA 58.907 30.769 14.70 0.00 40.30 2.44
4205 14171 6.625362 TCTGCAACAAGACATTTGTTACAAA 58.375 32.000 13.12 13.12 40.30 2.83
4206 14172 6.201226 TCTGCAACAAGACATTTGTTACAA 57.799 33.333 5.10 0.00 40.30 2.41
4207 14173 5.826601 TCTGCAACAAGACATTTGTTACA 57.173 34.783 5.10 5.47 40.30 2.41
4208 14174 7.698836 AATTCTGCAACAAGACATTTGTTAC 57.301 32.000 5.10 1.26 40.30 2.50
4209 14175 8.715191 AAAATTCTGCAACAAGACATTTGTTA 57.285 26.923 5.10 0.00 40.30 2.41
4210 14176 7.614124 AAAATTCTGCAACAAGACATTTGTT 57.386 28.000 0.00 0.00 42.75 2.83
4211 14177 7.464444 CGAAAAATTCTGCAACAAGACATTTGT 60.464 33.333 0.00 0.00 0.00 2.83
4212 14178 6.842282 CGAAAAATTCTGCAACAAGACATTTG 59.158 34.615 0.00 0.00 0.00 2.32
4213 14179 6.509997 GCGAAAAATTCTGCAACAAGACATTT 60.510 34.615 0.00 0.00 32.28 2.32
4214 14180 5.050837 GCGAAAAATTCTGCAACAAGACATT 60.051 36.000 0.00 0.00 32.28 2.71
4215 14181 4.445385 GCGAAAAATTCTGCAACAAGACAT 59.555 37.500 0.00 0.00 32.28 3.06
4216 14182 3.796178 GCGAAAAATTCTGCAACAAGACA 59.204 39.130 0.00 0.00 32.28 3.41
4217 14183 3.796178 TGCGAAAAATTCTGCAACAAGAC 59.204 39.130 6.99 0.00 36.68 3.01
4218 14184 4.039151 TGCGAAAAATTCTGCAACAAGA 57.961 36.364 6.99 0.00 36.68 3.02
4219 14185 4.775440 TTGCGAAAAATTCTGCAACAAG 57.225 36.364 13.96 0.00 41.00 3.16
4223 14189 4.039151 TCTGTTGCGAAAAATTCTGCAA 57.961 36.364 13.96 13.96 42.38 4.08
4224 14190 3.314913 TCTCTGTTGCGAAAAATTCTGCA 59.685 39.130 0.00 5.83 37.40 4.41
4225 14191 3.888934 TCTCTGTTGCGAAAAATTCTGC 58.111 40.909 0.00 0.00 0.00 4.26
4226 14192 5.936054 AGATCTCTGTTGCGAAAAATTCTG 58.064 37.500 0.00 0.00 0.00 3.02
4227 14193 6.016777 ACAAGATCTCTGTTGCGAAAAATTCT 60.017 34.615 0.00 0.00 0.00 2.40
4228 14194 6.145535 ACAAGATCTCTGTTGCGAAAAATTC 58.854 36.000 0.00 0.00 0.00 2.17
4229 14195 6.076981 ACAAGATCTCTGTTGCGAAAAATT 57.923 33.333 0.00 0.00 0.00 1.82
4230 14196 5.695851 ACAAGATCTCTGTTGCGAAAAAT 57.304 34.783 0.00 0.00 0.00 1.82
4231 14197 5.273170 CAACAAGATCTCTGTTGCGAAAAA 58.727 37.500 24.63 0.00 36.86 1.94
4232 14198 4.847633 CAACAAGATCTCTGTTGCGAAAA 58.152 39.130 24.63 0.00 36.86 2.29
4233 14199 4.472691 CAACAAGATCTCTGTTGCGAAA 57.527 40.909 24.63 0.00 36.86 3.46
4238 14204 5.428496 TTTCTGCAACAAGATCTCTGTTG 57.572 39.130 28.11 28.11 43.90 3.33
4239 14205 6.645790 AATTTCTGCAACAAGATCTCTGTT 57.354 33.333 13.96 13.96 0.00 3.16
4240 14206 6.645790 AAATTTCTGCAACAAGATCTCTGT 57.354 33.333 0.00 0.00 0.00 3.41
4241 14207 8.077991 TGTAAAATTTCTGCAACAAGATCTCTG 58.922 33.333 0.00 0.00 0.00 3.35
4242 14208 8.169977 TGTAAAATTTCTGCAACAAGATCTCT 57.830 30.769 0.00 0.00 0.00 3.10
4243 14209 8.801715 TTGTAAAATTTCTGCAACAAGATCTC 57.198 30.769 0.00 0.00 0.00 2.75
4244 14210 9.252962 CTTTGTAAAATTTCTGCAACAAGATCT 57.747 29.630 0.00 0.00 0.00 2.75
4245 14211 8.006027 GCTTTGTAAAATTTCTGCAACAAGATC 58.994 33.333 0.00 0.00 0.00 2.75
4246 14212 7.712205 AGCTTTGTAAAATTTCTGCAACAAGAT 59.288 29.630 0.00 0.00 0.00 2.40
4247 14213 7.041107 AGCTTTGTAAAATTTCTGCAACAAGA 58.959 30.769 0.00 0.00 0.00 3.02
4248 14214 7.237920 AGCTTTGTAAAATTTCTGCAACAAG 57.762 32.000 0.00 0.00 0.00 3.16
4249 14215 7.608308 AAGCTTTGTAAAATTTCTGCAACAA 57.392 28.000 0.00 0.00 0.00 2.83
4250 14216 7.608308 AAAGCTTTGTAAAATTTCTGCAACA 57.392 28.000 11.80 0.00 0.00 3.33
4251 14217 8.894409 AAAAAGCTTTGTAAAATTTCTGCAAC 57.106 26.923 13.54 0.00 0.00 4.17
4287 14253 9.778741 TCTTGTTGCGGAAATATATAAAGATCT 57.221 29.630 0.00 0.00 0.00 2.75
4290 14256 9.778741 AGATCTTGTTGCGGAAATATATAAAGA 57.221 29.630 0.00 0.00 0.00 2.52
4292 14258 9.778741 AGAGATCTTGTTGCGGAAATATATAAA 57.221 29.630 0.00 0.00 0.00 1.40
4293 14259 9.208022 CAGAGATCTTGTTGCGGAAATATATAA 57.792 33.333 0.00 0.00 0.00 0.98
4294 14260 8.367911 ACAGAGATCTTGTTGCGGAAATATATA 58.632 33.333 0.00 0.00 0.00 0.86
4295 14261 7.220030 ACAGAGATCTTGTTGCGGAAATATAT 58.780 34.615 0.00 0.00 0.00 0.86
4296 14262 6.582636 ACAGAGATCTTGTTGCGGAAATATA 58.417 36.000 0.00 0.00 0.00 0.86
4297 14263 5.431765 ACAGAGATCTTGTTGCGGAAATAT 58.568 37.500 0.00 0.00 0.00 1.28
4298 14264 4.832248 ACAGAGATCTTGTTGCGGAAATA 58.168 39.130 0.00 0.00 0.00 1.40
4299 14265 3.679389 ACAGAGATCTTGTTGCGGAAAT 58.321 40.909 0.00 0.00 0.00 2.17
4300 14266 3.126001 ACAGAGATCTTGTTGCGGAAA 57.874 42.857 0.00 0.00 0.00 3.13
4301 14267 2.807967 CAACAGAGATCTTGTTGCGGAA 59.192 45.455 24.63 0.00 36.86 4.30
4302 14268 2.416747 CAACAGAGATCTTGTTGCGGA 58.583 47.619 24.63 0.00 36.86 5.54
4303 14269 2.888513 CAACAGAGATCTTGTTGCGG 57.111 50.000 24.63 11.71 36.86 5.69
4306 14272 4.472691 TTTCGCAACAGAGATCTTGTTG 57.527 40.909 28.11 28.11 43.90 3.33
4307 14273 5.499139 TTTTTCGCAACAGAGATCTTGTT 57.501 34.783 13.96 13.96 0.00 2.83
4326 14292 3.706086 AGGGTGTGTTGCAGATTCTTTTT 59.294 39.130 0.00 0.00 0.00 1.94
4327 14293 3.299503 AGGGTGTGTTGCAGATTCTTTT 58.700 40.909 0.00 0.00 0.00 2.27
4328 14294 2.949447 AGGGTGTGTTGCAGATTCTTT 58.051 42.857 0.00 0.00 0.00 2.52
4329 14295 2.664402 AGGGTGTGTTGCAGATTCTT 57.336 45.000 0.00 0.00 0.00 2.52
4330 14296 2.624838 CAAAGGGTGTGTTGCAGATTCT 59.375 45.455 0.00 0.00 0.00 2.40
4331 14297 2.362077 ACAAAGGGTGTGTTGCAGATTC 59.638 45.455 0.00 0.00 39.72 2.52
4332 14298 2.387757 ACAAAGGGTGTGTTGCAGATT 58.612 42.857 0.00 0.00 39.72 2.40
4333 14299 2.071778 ACAAAGGGTGTGTTGCAGAT 57.928 45.000 0.00 0.00 39.72 2.90
4334 14300 1.476085 CAACAAAGGGTGTGTTGCAGA 59.524 47.619 4.52 0.00 46.63 4.26
4335 14301 1.925229 CAACAAAGGGTGTGTTGCAG 58.075 50.000 4.52 0.00 46.63 4.41
4339 14305 1.846007 TCTGCAACAAAGGGTGTGTT 58.154 45.000 0.00 0.00 40.60 3.32
4340 14306 1.846007 TTCTGCAACAAAGGGTGTGT 58.154 45.000 0.00 0.00 40.60 3.72
4341 14307 2.957491 TTTCTGCAACAAAGGGTGTG 57.043 45.000 0.00 0.00 40.60 3.82
4342 14308 3.971245 TTTTTCTGCAACAAAGGGTGT 57.029 38.095 0.00 0.00 44.64 4.16
4359 14325 2.898705 TCGTGTTGCAATTGCCTTTTT 58.101 38.095 26.94 0.00 41.18 1.94
4360 14326 2.593346 TCGTGTTGCAATTGCCTTTT 57.407 40.000 26.94 0.00 41.18 2.27
4361 14327 2.801679 CAATCGTGTTGCAATTGCCTTT 59.198 40.909 26.94 7.66 41.18 3.11
4362 14328 2.406130 CAATCGTGTTGCAATTGCCTT 58.594 42.857 26.94 6.85 41.18 4.35
4363 14329 1.337074 CCAATCGTGTTGCAATTGCCT 60.337 47.619 26.94 1.00 41.18 4.75
4364 14330 1.070038 CCAATCGTGTTGCAATTGCC 58.930 50.000 26.94 13.43 41.18 4.52
4365 14331 1.987770 CTCCAATCGTGTTGCAATTGC 59.012 47.619 23.69 23.69 42.50 3.56
4366 14332 2.228582 TCCTCCAATCGTGTTGCAATTG 59.771 45.455 0.59 0.00 0.00 2.32
4367 14333 2.489329 CTCCTCCAATCGTGTTGCAATT 59.511 45.455 0.59 0.00 0.00 2.32
4368 14334 2.086869 CTCCTCCAATCGTGTTGCAAT 58.913 47.619 0.59 0.00 0.00 3.56
4369 14335 1.522668 CTCCTCCAATCGTGTTGCAA 58.477 50.000 0.00 0.00 0.00 4.08
4370 14336 0.321564 CCTCCTCCAATCGTGTTGCA 60.322 55.000 0.00 0.00 0.00 4.08
4371 14337 0.321653 ACCTCCTCCAATCGTGTTGC 60.322 55.000 0.00 0.00 0.00 4.17
4372 14338 2.185004 AACCTCCTCCAATCGTGTTG 57.815 50.000 0.00 0.00 0.00 3.33
4373 14339 2.951229 AAACCTCCTCCAATCGTGTT 57.049 45.000 0.00 0.00 0.00 3.32
4374 14340 3.517901 TCATAAACCTCCTCCAATCGTGT 59.482 43.478 0.00 0.00 0.00 4.49
4375 14341 4.122776 CTCATAAACCTCCTCCAATCGTG 58.877 47.826 0.00 0.00 0.00 4.35
4376 14342 4.030913 TCTCATAAACCTCCTCCAATCGT 58.969 43.478 0.00 0.00 0.00 3.73
4377 14343 4.626042 CTCTCATAAACCTCCTCCAATCG 58.374 47.826 0.00 0.00 0.00 3.34
4378 14344 4.384940 GCTCTCATAAACCTCCTCCAATC 58.615 47.826 0.00 0.00 0.00 2.67
4379 14345 3.181461 CGCTCTCATAAACCTCCTCCAAT 60.181 47.826 0.00 0.00 0.00 3.16
4380 14346 2.168521 CGCTCTCATAAACCTCCTCCAA 59.831 50.000 0.00 0.00 0.00 3.53
4381 14347 1.757118 CGCTCTCATAAACCTCCTCCA 59.243 52.381 0.00 0.00 0.00 3.86
4382 14348 1.757699 ACGCTCTCATAAACCTCCTCC 59.242 52.381 0.00 0.00 0.00 4.30
4383 14349 3.131400 AGAACGCTCTCATAAACCTCCTC 59.869 47.826 0.00 0.00 0.00 3.71
4384 14350 3.100671 AGAACGCTCTCATAAACCTCCT 58.899 45.455 0.00 0.00 0.00 3.69
4385 14351 3.190874 CAGAACGCTCTCATAAACCTCC 58.809 50.000 0.00 0.00 0.00 4.30
4386 14352 3.851098 ACAGAACGCTCTCATAAACCTC 58.149 45.455 0.00 0.00 0.00 3.85
4387 14353 3.963428 ACAGAACGCTCTCATAAACCT 57.037 42.857 0.00 0.00 0.00 3.50
4388 14354 5.348986 TCATACAGAACGCTCTCATAAACC 58.651 41.667 0.00 0.00 0.00 3.27
4389 14355 6.563010 GCATCATACAGAACGCTCTCATAAAC 60.563 42.308 0.00 0.00 0.00 2.01
4390 14356 5.463392 GCATCATACAGAACGCTCTCATAAA 59.537 40.000 0.00 0.00 0.00 1.40
4391 14357 4.984785 GCATCATACAGAACGCTCTCATAA 59.015 41.667 0.00 0.00 0.00 1.90
4392 14358 4.550422 GCATCATACAGAACGCTCTCATA 58.450 43.478 0.00 0.00 0.00 2.15
4393 14359 3.388308 GCATCATACAGAACGCTCTCAT 58.612 45.455 0.00 0.00 0.00 2.90
4394 14360 2.796032 CGCATCATACAGAACGCTCTCA 60.796 50.000 0.00 0.00 0.00 3.27
4395 14361 1.783711 CGCATCATACAGAACGCTCTC 59.216 52.381 0.00 0.00 0.00 3.20
4396 14362 1.405463 TCGCATCATACAGAACGCTCT 59.595 47.619 0.00 0.00 31.97 4.09
4397 14363 1.840181 TCGCATCATACAGAACGCTC 58.160 50.000 0.00 0.00 31.97 5.03
4398 14364 2.130395 CATCGCATCATACAGAACGCT 58.870 47.619 0.00 0.00 31.97 5.07
4399 14365 1.397693 GCATCGCATCATACAGAACGC 60.398 52.381 0.00 0.00 31.97 4.84
4400 14366 2.130395 AGCATCGCATCATACAGAACG 58.870 47.619 0.00 0.00 0.00 3.95
4401 14367 3.183976 CAGAGCATCGCATCATACAGAAC 59.816 47.826 0.00 0.00 42.67 3.01
4402 14368 3.387397 CAGAGCATCGCATCATACAGAA 58.613 45.455 0.00 0.00 42.67 3.02
4403 14369 3.022607 CAGAGCATCGCATCATACAGA 57.977 47.619 0.00 0.00 42.67 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.