Multiple sequence alignment - TraesCS2D01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G022700 chr2D 100.000 3303 0 0 1 3303 10309216 10312518 0.000000e+00 6100.0
1 TraesCS2D01G022700 chr2D 87.188 1483 156 22 952 2423 19544892 19543433 0.000000e+00 1655.0
2 TraesCS2D01G022700 chr2D 89.322 1077 107 4 1247 2321 19245516 19244446 0.000000e+00 1345.0
3 TraesCS2D01G022700 chr2D 95.482 332 14 1 1 331 587201334 587201003 2.260000e-146 529.0
4 TraesCS2D01G022700 chr2D 82.646 582 80 12 2499 3065 13601234 13600659 2.290000e-136 496.0
5 TraesCS2D01G022700 chr2D 84.387 269 38 2 952 1216 19246071 19245803 9.090000e-66 261.0
6 TraesCS2D01G022700 chr2A 92.009 2753 144 29 331 3065 10464414 10467108 0.000000e+00 3795.0
7 TraesCS2D01G022700 chr2A 87.200 125 12 1 2499 2619 15628237 15628113 4.440000e-29 139.0
8 TraesCS2D01G022700 chr2B 87.701 1496 152 22 978 2460 38841523 38842999 0.000000e+00 1714.0
9 TraesCS2D01G022700 chr2B 88.095 1428 141 18 976 2396 4482056 4483461 0.000000e+00 1668.0
10 TraesCS2D01G022700 chr2B 84.598 448 57 9 2499 2938 24811019 24810576 5.060000e-118 435.0
11 TraesCS2D01G022700 chr2B 85.463 227 28 2 2498 2719 24695618 24695392 7.130000e-57 231.0
12 TraesCS2D01G022700 chr2B 86.905 84 10 1 3060 3143 753840249 753840331 3.510000e-15 93.5
13 TraesCS2D01G022700 chr2B 89.091 55 6 0 3060 3114 78822445 78822499 5.910000e-08 69.4
14 TraesCS2D01G022700 chr2B 89.091 55 4 2 2841 2894 623564528 623564475 2.130000e-07 67.6
15 TraesCS2D01G022700 chr3D 87.045 1482 160 20 952 2423 589696076 589697535 0.000000e+00 1644.0
16 TraesCS2D01G022700 chrUn 85.857 1499 177 19 945 2423 169570763 169572246 0.000000e+00 1561.0
17 TraesCS2D01G022700 chrUn 85.171 1025 140 7 1291 2303 150939696 150940720 0.000000e+00 1040.0
18 TraesCS2D01G022700 chrUn 83.775 604 73 18 945 1528 391746527 391747125 1.730000e-152 549.0
19 TraesCS2D01G022700 chr1B 85.857 1499 177 19 945 2423 44790157 44788674 0.000000e+00 1561.0
20 TraesCS2D01G022700 chr5D 96.707 334 8 3 1 331 537169184 537169517 1.340000e-153 553.0
21 TraesCS2D01G022700 chr6D 96.407 334 10 2 1 332 438804699 438805032 1.730000e-152 549.0
22 TraesCS2D01G022700 chr4B 95.482 332 14 1 1 331 339483196 339482865 2.260000e-146 529.0
23 TraesCS2D01G022700 chr7A 94.895 333 15 2 1 331 408592257 408591925 1.360000e-143 520.0
24 TraesCS2D01G022700 chr6A 94.895 333 15 2 1 331 19886151 19885819 1.360000e-143 520.0
25 TraesCS2D01G022700 chr4A 94.643 336 16 2 1 334 90432311 90432646 1.360000e-143 520.0
26 TraesCS2D01G022700 chr7B 94.294 333 17 2 1 331 66815349 66815017 2.940000e-140 508.0
27 TraesCS2D01G022700 chr7B 94.012 334 17 3 1 332 2134769 2134437 1.370000e-138 503.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G022700 chr2D 10309216 10312518 3302 False 6100 6100 100.0000 1 3303 1 chr2D.!!$F1 3302
1 TraesCS2D01G022700 chr2D 19543433 19544892 1459 True 1655 1655 87.1880 952 2423 1 chr2D.!!$R2 1471
2 TraesCS2D01G022700 chr2D 19244446 19246071 1625 True 803 1345 86.8545 952 2321 2 chr2D.!!$R4 1369
3 TraesCS2D01G022700 chr2D 13600659 13601234 575 True 496 496 82.6460 2499 3065 1 chr2D.!!$R1 566
4 TraesCS2D01G022700 chr2A 10464414 10467108 2694 False 3795 3795 92.0090 331 3065 1 chr2A.!!$F1 2734
5 TraesCS2D01G022700 chr2B 38841523 38842999 1476 False 1714 1714 87.7010 978 2460 1 chr2B.!!$F2 1482
6 TraesCS2D01G022700 chr2B 4482056 4483461 1405 False 1668 1668 88.0950 976 2396 1 chr2B.!!$F1 1420
7 TraesCS2D01G022700 chr3D 589696076 589697535 1459 False 1644 1644 87.0450 952 2423 1 chr3D.!!$F1 1471
8 TraesCS2D01G022700 chrUn 169570763 169572246 1483 False 1561 1561 85.8570 945 2423 1 chrUn.!!$F2 1478
9 TraesCS2D01G022700 chrUn 150939696 150940720 1024 False 1040 1040 85.1710 1291 2303 1 chrUn.!!$F1 1012
10 TraesCS2D01G022700 chrUn 391746527 391747125 598 False 549 549 83.7750 945 1528 1 chrUn.!!$F3 583
11 TraesCS2D01G022700 chr1B 44788674 44790157 1483 True 1561 1561 85.8570 945 2423 1 chr1B.!!$R1 1478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.034477 CCTTGTAATCCTGGCCGGTT 60.034 55.0 11.58 1.23 0.00 4.44 F
281 282 0.182537 TAATCCTGGCCGGTTGATGG 59.817 55.0 11.58 0.00 0.00 3.51 F
311 312 0.673437 TCAAAGCCGGGCTCTTTTTG 59.327 50.0 24.08 21.74 38.25 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1282 1555 0.034476 TCATCTGGCCTGATCATCGC 59.966 55.000 21.33 0.56 0.00 4.58 R
1576 1849 2.032634 GTTGAGCATCGTCCGGCAA 61.033 57.895 0.00 0.00 38.61 4.52 R
2368 2662 5.389778 TGAATGCTTACAATTGTACTTGCG 58.610 37.500 17.85 5.89 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.665971 AGGGGCCCTTTGCAGAGG 61.666 66.667 22.67 16.42 43.89 3.69
30 31 1.661341 GCAGAGGCAGTAACAGATGG 58.339 55.000 0.00 0.00 40.72 3.51
31 32 1.065854 GCAGAGGCAGTAACAGATGGT 60.066 52.381 0.00 0.00 40.72 3.55
32 33 2.625737 CAGAGGCAGTAACAGATGGTG 58.374 52.381 0.00 0.00 0.00 4.17
33 34 1.556911 AGAGGCAGTAACAGATGGTGG 59.443 52.381 0.00 0.00 0.00 4.61
34 35 1.279271 GAGGCAGTAACAGATGGTGGT 59.721 52.381 0.00 0.00 0.00 4.16
35 36 1.279271 AGGCAGTAACAGATGGTGGTC 59.721 52.381 0.00 0.00 0.00 4.02
36 37 1.279271 GGCAGTAACAGATGGTGGTCT 59.721 52.381 0.00 0.00 0.00 3.85
40 41 2.567615 AGTAACAGATGGTGGTCTGGTC 59.432 50.000 8.57 0.00 42.32 4.02
41 42 0.693049 AACAGATGGTGGTCTGGTCC 59.307 55.000 8.57 0.00 42.32 4.46
42 43 1.766499 AACAGATGGTGGTCTGGTCCT 60.766 52.381 8.57 0.00 42.32 3.85
43 44 0.987294 CAGATGGTGGTCTGGTCCTT 59.013 55.000 0.00 0.00 41.49 3.36
44 45 0.987294 AGATGGTGGTCTGGTCCTTG 59.013 55.000 0.00 0.00 0.00 3.61
45 46 0.678048 GATGGTGGTCTGGTCCTTGC 60.678 60.000 0.00 0.00 0.00 4.01
46 47 1.136329 ATGGTGGTCTGGTCCTTGCT 61.136 55.000 0.00 0.00 0.00 3.91
47 48 1.302832 GGTGGTCTGGTCCTTGCTG 60.303 63.158 0.00 0.00 0.00 4.41
48 49 1.302832 GTGGTCTGGTCCTTGCTGG 60.303 63.158 0.00 0.00 37.10 4.85
49 50 2.360475 GGTCTGGTCCTTGCTGGC 60.360 66.667 0.00 0.00 35.26 4.85
50 51 2.753029 GTCTGGTCCTTGCTGGCT 59.247 61.111 0.00 0.00 35.26 4.75
51 52 1.376553 GTCTGGTCCTTGCTGGCTC 60.377 63.158 0.00 0.00 35.26 4.70
52 53 2.045536 CTGGTCCTTGCTGGCTCC 60.046 66.667 0.00 0.00 35.26 4.70
53 54 3.965539 CTGGTCCTTGCTGGCTCCG 62.966 68.421 0.00 0.00 34.14 4.63
54 55 3.706373 GGTCCTTGCTGGCTCCGA 61.706 66.667 0.00 0.00 35.26 4.55
55 56 2.125350 GTCCTTGCTGGCTCCGAG 60.125 66.667 0.00 0.00 35.26 4.63
56 57 3.393970 TCCTTGCTGGCTCCGAGG 61.394 66.667 0.00 5.26 35.26 4.63
57 58 4.479993 CCTTGCTGGCTCCGAGGG 62.480 72.222 0.00 0.00 0.00 4.30
58 59 3.710722 CTTGCTGGCTCCGAGGGT 61.711 66.667 0.00 0.00 0.00 4.34
59 60 3.965539 CTTGCTGGCTCCGAGGGTG 62.966 68.421 0.00 0.00 0.00 4.61
65 66 4.767255 GCTCCGAGGGTGGCTGTG 62.767 72.222 0.00 0.00 0.00 3.66
66 67 2.997315 CTCCGAGGGTGGCTGTGA 60.997 66.667 0.00 0.00 0.00 3.58
67 68 2.284625 TCCGAGGGTGGCTGTGAT 60.285 61.111 0.00 0.00 0.00 3.06
68 69 2.187946 CCGAGGGTGGCTGTGATC 59.812 66.667 0.00 0.00 0.00 2.92
69 70 2.659063 CCGAGGGTGGCTGTGATCA 61.659 63.158 0.00 0.00 0.00 2.92
70 71 1.448540 CGAGGGTGGCTGTGATCAC 60.449 63.158 19.27 19.27 0.00 3.06
71 72 1.448540 GAGGGTGGCTGTGATCACG 60.449 63.158 20.54 15.64 34.93 4.35
72 73 1.888436 GAGGGTGGCTGTGATCACGA 61.888 60.000 20.54 9.23 34.93 4.35
73 74 1.003839 GGGTGGCTGTGATCACGAA 60.004 57.895 20.54 3.52 34.93 3.85
74 75 1.021390 GGGTGGCTGTGATCACGAAG 61.021 60.000 20.54 14.18 34.93 3.79
75 76 1.639298 GGTGGCTGTGATCACGAAGC 61.639 60.000 23.43 23.43 34.93 3.86
76 77 0.671781 GTGGCTGTGATCACGAAGCT 60.672 55.000 27.69 0.00 0.00 3.74
77 78 0.035317 TGGCTGTGATCACGAAGCTT 59.965 50.000 27.69 0.00 0.00 3.74
78 79 0.445436 GGCTGTGATCACGAAGCTTG 59.555 55.000 27.69 12.01 0.00 4.01
79 80 0.179205 GCTGTGATCACGAAGCTTGC 60.179 55.000 23.94 14.23 0.00 4.01
80 81 0.094216 CTGTGATCACGAAGCTTGCG 59.906 55.000 20.54 10.24 0.00 4.85
81 82 1.225854 GTGATCACGAAGCTTGCGC 60.226 57.895 10.69 0.00 0.00 6.09
82 83 2.020559 GATCACGAAGCTTGCGCG 59.979 61.111 2.10 0.00 42.32 6.86
83 84 3.425938 GATCACGAAGCTTGCGCGG 62.426 63.158 8.83 4.18 42.32 6.46
84 85 4.961511 TCACGAAGCTTGCGCGGT 62.962 61.111 8.83 0.00 42.32 5.68
85 86 4.724697 CACGAAGCTTGCGCGGTG 62.725 66.667 8.83 0.07 42.32 4.94
88 89 3.660111 GAAGCTTGCGCGGTGGTT 61.660 61.111 8.83 7.10 42.32 3.67
89 90 3.595108 GAAGCTTGCGCGGTGGTTC 62.595 63.158 18.05 18.05 42.32 3.62
90 91 4.927782 AGCTTGCGCGGTGGTTCA 62.928 61.111 8.83 0.00 42.32 3.18
91 92 3.737172 GCTTGCGCGGTGGTTCAT 61.737 61.111 8.83 0.00 0.00 2.57
92 93 2.953821 CTTGCGCGGTGGTTCATT 59.046 55.556 8.83 0.00 0.00 2.57
93 94 1.154225 CTTGCGCGGTGGTTCATTC 60.154 57.895 8.83 0.00 0.00 2.67
94 95 2.527547 CTTGCGCGGTGGTTCATTCC 62.528 60.000 8.83 0.00 0.00 3.01
95 96 2.746277 GCGCGGTGGTTCATTCCT 60.746 61.111 8.83 0.00 0.00 3.36
96 97 2.750888 GCGCGGTGGTTCATTCCTC 61.751 63.158 8.83 0.00 0.00 3.71
97 98 2.106683 CGCGGTGGTTCATTCCTCC 61.107 63.158 0.00 0.00 37.66 4.30
98 99 1.749258 GCGGTGGTTCATTCCTCCC 60.749 63.158 0.00 0.00 37.72 4.30
99 100 1.682849 CGGTGGTTCATTCCTCCCA 59.317 57.895 0.00 0.00 37.72 4.37
100 101 0.037590 CGGTGGTTCATTCCTCCCAA 59.962 55.000 0.00 0.00 37.72 4.12
101 102 1.839424 GGTGGTTCATTCCTCCCAAG 58.161 55.000 0.00 0.00 35.72 3.61
102 103 1.354368 GGTGGTTCATTCCTCCCAAGA 59.646 52.381 0.00 0.00 35.72 3.02
103 104 2.437413 GTGGTTCATTCCTCCCAAGAC 58.563 52.381 0.00 0.00 0.00 3.01
104 105 1.354368 TGGTTCATTCCTCCCAAGACC 59.646 52.381 0.00 0.00 0.00 3.85
105 106 1.341089 GGTTCATTCCTCCCAAGACCC 60.341 57.143 0.00 0.00 0.00 4.46
106 107 1.636003 GTTCATTCCTCCCAAGACCCT 59.364 52.381 0.00 0.00 0.00 4.34
107 108 2.844348 GTTCATTCCTCCCAAGACCCTA 59.156 50.000 0.00 0.00 0.00 3.53
108 109 2.764269 TCATTCCTCCCAAGACCCTAG 58.236 52.381 0.00 0.00 0.00 3.02
109 110 2.045885 TCATTCCTCCCAAGACCCTAGT 59.954 50.000 0.00 0.00 0.00 2.57
110 111 2.735259 TTCCTCCCAAGACCCTAGTT 57.265 50.000 0.00 0.00 0.00 2.24
111 112 2.735259 TCCTCCCAAGACCCTAGTTT 57.265 50.000 0.00 0.00 0.00 2.66
112 113 2.547990 TCCTCCCAAGACCCTAGTTTC 58.452 52.381 0.00 0.00 0.00 2.78
113 114 1.207329 CCTCCCAAGACCCTAGTTTCG 59.793 57.143 0.00 0.00 0.00 3.46
114 115 1.900486 CTCCCAAGACCCTAGTTTCGT 59.100 52.381 0.00 0.00 0.00 3.85
115 116 2.302157 CTCCCAAGACCCTAGTTTCGTT 59.698 50.000 0.00 0.00 0.00 3.85
116 117 2.301009 TCCCAAGACCCTAGTTTCGTTC 59.699 50.000 0.00 0.00 0.00 3.95
117 118 2.302157 CCCAAGACCCTAGTTTCGTTCT 59.698 50.000 0.00 0.00 0.00 3.01
118 119 3.326747 CCAAGACCCTAGTTTCGTTCTG 58.673 50.000 0.00 0.00 0.00 3.02
119 120 3.244112 CCAAGACCCTAGTTTCGTTCTGT 60.244 47.826 0.00 0.00 0.00 3.41
120 121 4.377897 CAAGACCCTAGTTTCGTTCTGTT 58.622 43.478 0.00 0.00 0.00 3.16
121 122 3.991367 AGACCCTAGTTTCGTTCTGTTG 58.009 45.455 0.00 0.00 0.00 3.33
122 123 3.064931 GACCCTAGTTTCGTTCTGTTGG 58.935 50.000 0.00 0.00 0.00 3.77
123 124 2.436911 ACCCTAGTTTCGTTCTGTTGGT 59.563 45.455 0.00 0.00 0.00 3.67
124 125 2.806244 CCCTAGTTTCGTTCTGTTGGTG 59.194 50.000 0.00 0.00 0.00 4.17
125 126 3.463944 CCTAGTTTCGTTCTGTTGGTGT 58.536 45.455 0.00 0.00 0.00 4.16
126 127 4.501915 CCCTAGTTTCGTTCTGTTGGTGTA 60.502 45.833 0.00 0.00 0.00 2.90
127 128 4.684703 CCTAGTTTCGTTCTGTTGGTGTAG 59.315 45.833 0.00 0.00 0.00 2.74
128 129 3.463944 AGTTTCGTTCTGTTGGTGTAGG 58.536 45.455 0.00 0.00 0.00 3.18
129 130 3.118519 AGTTTCGTTCTGTTGGTGTAGGT 60.119 43.478 0.00 0.00 0.00 3.08
130 131 2.806608 TCGTTCTGTTGGTGTAGGTC 57.193 50.000 0.00 0.00 0.00 3.85
131 132 1.001048 TCGTTCTGTTGGTGTAGGTCG 60.001 52.381 0.00 0.00 0.00 4.79
132 133 1.269413 CGTTCTGTTGGTGTAGGTCGT 60.269 52.381 0.00 0.00 0.00 4.34
133 134 2.401351 GTTCTGTTGGTGTAGGTCGTC 58.599 52.381 0.00 0.00 0.00 4.20
134 135 0.963962 TCTGTTGGTGTAGGTCGTCC 59.036 55.000 0.00 0.00 0.00 4.79
135 136 0.677288 CTGTTGGTGTAGGTCGTCCA 59.323 55.000 0.51 0.00 35.89 4.02
136 137 0.677288 TGTTGGTGTAGGTCGTCCAG 59.323 55.000 0.51 0.00 35.89 3.86
137 138 0.677842 GTTGGTGTAGGTCGTCCAGT 59.322 55.000 0.51 0.00 35.89 4.00
138 139 1.888512 GTTGGTGTAGGTCGTCCAGTA 59.111 52.381 0.51 0.00 35.89 2.74
139 140 1.830279 TGGTGTAGGTCGTCCAGTAG 58.170 55.000 0.51 0.00 35.89 2.57
140 141 1.101331 GGTGTAGGTCGTCCAGTAGG 58.899 60.000 0.51 0.00 35.89 3.18
141 142 1.101331 GTGTAGGTCGTCCAGTAGGG 58.899 60.000 0.51 0.00 35.89 3.53
142 143 0.700564 TGTAGGTCGTCCAGTAGGGT 59.299 55.000 0.51 0.00 38.11 4.34
143 144 1.101331 GTAGGTCGTCCAGTAGGGTG 58.899 60.000 0.51 0.00 38.11 4.61
144 145 0.700564 TAGGTCGTCCAGTAGGGTGT 59.299 55.000 0.51 0.00 38.11 4.16
145 146 0.178941 AGGTCGTCCAGTAGGGTGTT 60.179 55.000 0.51 0.00 38.11 3.32
146 147 0.037605 GGTCGTCCAGTAGGGTGTTG 60.038 60.000 0.00 0.00 38.11 3.33
147 148 0.037605 GTCGTCCAGTAGGGTGTTGG 60.038 60.000 0.00 0.00 38.11 3.77
148 149 0.470456 TCGTCCAGTAGGGTGTTGGT 60.470 55.000 0.00 0.00 38.11 3.67
149 150 1.203038 TCGTCCAGTAGGGTGTTGGTA 60.203 52.381 0.00 0.00 38.11 3.25
150 151 1.203994 CGTCCAGTAGGGTGTTGGTAG 59.796 57.143 0.00 0.00 38.11 3.18
151 152 1.066358 GTCCAGTAGGGTGTTGGTAGC 60.066 57.143 0.00 0.00 38.11 3.58
152 153 0.981183 CCAGTAGGGTGTTGGTAGCA 59.019 55.000 0.00 0.00 0.00 3.49
153 154 1.066143 CCAGTAGGGTGTTGGTAGCAG 60.066 57.143 0.00 0.00 0.00 4.24
154 155 0.613777 AGTAGGGTGTTGGTAGCAGC 59.386 55.000 1.33 1.33 0.00 5.25
155 156 0.739813 GTAGGGTGTTGGTAGCAGCG 60.740 60.000 4.27 0.00 35.42 5.18
156 157 1.189524 TAGGGTGTTGGTAGCAGCGT 61.190 55.000 4.27 0.00 36.59 5.07
157 158 2.325082 GGGTGTTGGTAGCAGCGTG 61.325 63.158 4.27 0.00 35.42 5.34
158 159 1.301401 GGTGTTGGTAGCAGCGTGA 60.301 57.895 4.27 0.00 0.00 4.35
159 160 0.673644 GGTGTTGGTAGCAGCGTGAT 60.674 55.000 4.27 0.00 0.00 3.06
160 161 0.443869 GTGTTGGTAGCAGCGTGATG 59.556 55.000 4.27 0.00 0.00 3.07
161 162 0.320050 TGTTGGTAGCAGCGTGATGA 59.680 50.000 4.27 0.00 0.00 2.92
162 163 1.066215 TGTTGGTAGCAGCGTGATGAT 60.066 47.619 4.27 0.00 0.00 2.45
163 164 1.328680 GTTGGTAGCAGCGTGATGATG 59.671 52.381 0.00 0.00 36.94 3.07
169 170 1.725665 CAGCGTGATGATGCCTTGG 59.274 57.895 0.00 0.00 34.26 3.61
170 171 2.117156 AGCGTGATGATGCCTTGGC 61.117 57.895 4.43 4.43 34.26 4.52
171 172 2.117156 GCGTGATGATGCCTTGGCT 61.117 57.895 13.18 0.00 0.00 4.75
172 173 2.020131 CGTGATGATGCCTTGGCTC 58.980 57.895 13.18 8.36 0.00 4.70
173 174 0.745486 CGTGATGATGCCTTGGCTCA 60.745 55.000 13.18 13.23 0.00 4.26
174 175 0.737219 GTGATGATGCCTTGGCTCAC 59.263 55.000 13.18 13.31 0.00 3.51
175 176 0.622136 TGATGATGCCTTGGCTCACT 59.378 50.000 13.18 5.02 0.00 3.41
176 177 1.307097 GATGATGCCTTGGCTCACTC 58.693 55.000 13.18 9.26 0.00 3.51
177 178 0.917533 ATGATGCCTTGGCTCACTCT 59.082 50.000 13.18 0.00 0.00 3.24
178 179 0.035725 TGATGCCTTGGCTCACTCTG 60.036 55.000 13.18 0.00 0.00 3.35
179 180 0.035630 GATGCCTTGGCTCACTCTGT 60.036 55.000 13.18 0.00 0.00 3.41
180 181 0.403271 ATGCCTTGGCTCACTCTGTT 59.597 50.000 13.18 0.00 0.00 3.16
181 182 0.535780 TGCCTTGGCTCACTCTGTTG 60.536 55.000 13.18 0.00 0.00 3.33
182 183 1.860484 GCCTTGGCTCACTCTGTTGC 61.860 60.000 4.11 0.00 0.00 4.17
183 184 0.250640 CCTTGGCTCACTCTGTTGCT 60.251 55.000 0.00 0.00 0.00 3.91
184 185 0.873054 CTTGGCTCACTCTGTTGCTG 59.127 55.000 0.00 0.00 0.00 4.41
185 186 1.168407 TTGGCTCACTCTGTTGCTGC 61.168 55.000 0.00 0.00 0.00 5.25
186 187 2.331132 GGCTCACTCTGTTGCTGCC 61.331 63.158 0.00 0.00 0.00 4.85
187 188 1.302351 GCTCACTCTGTTGCTGCCT 60.302 57.895 0.00 0.00 0.00 4.75
188 189 0.888285 GCTCACTCTGTTGCTGCCTT 60.888 55.000 0.00 0.00 0.00 4.35
189 190 0.873054 CTCACTCTGTTGCTGCCTTG 59.127 55.000 0.00 0.00 0.00 3.61
190 191 0.469494 TCACTCTGTTGCTGCCTTGA 59.531 50.000 0.00 0.00 0.00 3.02
191 192 0.873054 CACTCTGTTGCTGCCTTGAG 59.127 55.000 0.00 2.56 0.00 3.02
192 193 0.471617 ACTCTGTTGCTGCCTTGAGT 59.528 50.000 0.00 3.19 0.00 3.41
193 194 1.133976 ACTCTGTTGCTGCCTTGAGTT 60.134 47.619 0.00 0.00 31.71 3.01
194 195 1.266175 CTCTGTTGCTGCCTTGAGTTG 59.734 52.381 0.00 0.00 0.00 3.16
195 196 1.027357 CTGTTGCTGCCTTGAGTTGT 58.973 50.000 0.00 0.00 0.00 3.32
196 197 1.406539 CTGTTGCTGCCTTGAGTTGTT 59.593 47.619 0.00 0.00 0.00 2.83
197 198 1.824230 TGTTGCTGCCTTGAGTTGTTT 59.176 42.857 0.00 0.00 0.00 2.83
198 199 2.233431 TGTTGCTGCCTTGAGTTGTTTT 59.767 40.909 0.00 0.00 0.00 2.43
199 200 2.582728 TGCTGCCTTGAGTTGTTTTG 57.417 45.000 0.00 0.00 0.00 2.44
200 201 1.211743 GCTGCCTTGAGTTGTTTTGC 58.788 50.000 0.00 0.00 0.00 3.68
201 202 1.202452 GCTGCCTTGAGTTGTTTTGCT 60.202 47.619 0.00 0.00 0.00 3.91
202 203 2.739609 GCTGCCTTGAGTTGTTTTGCTT 60.740 45.455 0.00 0.00 0.00 3.91
203 204 2.861935 CTGCCTTGAGTTGTTTTGCTTG 59.138 45.455 0.00 0.00 0.00 4.01
204 205 2.495270 TGCCTTGAGTTGTTTTGCTTGA 59.505 40.909 0.00 0.00 0.00 3.02
205 206 3.118542 GCCTTGAGTTGTTTTGCTTGAG 58.881 45.455 0.00 0.00 0.00 3.02
206 207 3.429410 GCCTTGAGTTGTTTTGCTTGAGT 60.429 43.478 0.00 0.00 0.00 3.41
207 208 4.747810 CCTTGAGTTGTTTTGCTTGAGTT 58.252 39.130 0.00 0.00 0.00 3.01
208 209 4.800471 CCTTGAGTTGTTTTGCTTGAGTTC 59.200 41.667 0.00 0.00 0.00 3.01
209 210 4.370364 TGAGTTGTTTTGCTTGAGTTCC 57.630 40.909 0.00 0.00 0.00 3.62
210 211 4.016444 TGAGTTGTTTTGCTTGAGTTCCT 58.984 39.130 0.00 0.00 0.00 3.36
211 212 4.462483 TGAGTTGTTTTGCTTGAGTTCCTT 59.538 37.500 0.00 0.00 0.00 3.36
212 213 4.747810 AGTTGTTTTGCTTGAGTTCCTTG 58.252 39.130 0.00 0.00 0.00 3.61
213 214 4.220602 AGTTGTTTTGCTTGAGTTCCTTGT 59.779 37.500 0.00 0.00 0.00 3.16
214 215 5.417580 AGTTGTTTTGCTTGAGTTCCTTGTA 59.582 36.000 0.00 0.00 0.00 2.41
215 216 6.096846 AGTTGTTTTGCTTGAGTTCCTTGTAT 59.903 34.615 0.00 0.00 0.00 2.29
216 217 6.072112 TGTTTTGCTTGAGTTCCTTGTATC 57.928 37.500 0.00 0.00 0.00 2.24
217 218 5.009610 TGTTTTGCTTGAGTTCCTTGTATCC 59.990 40.000 0.00 0.00 0.00 2.59
218 219 2.972625 TGCTTGAGTTCCTTGTATCCG 58.027 47.619 0.00 0.00 0.00 4.18
219 220 2.301870 TGCTTGAGTTCCTTGTATCCGT 59.698 45.455 0.00 0.00 0.00 4.69
220 221 2.930682 GCTTGAGTTCCTTGTATCCGTC 59.069 50.000 0.00 0.00 0.00 4.79
221 222 2.933495 TGAGTTCCTTGTATCCGTCG 57.067 50.000 0.00 0.00 0.00 5.12
222 223 1.135199 TGAGTTCCTTGTATCCGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
223 224 1.134560 GAGTTCCTTGTATCCGTCGCT 59.865 52.381 0.00 0.00 0.00 4.93
224 225 1.134560 AGTTCCTTGTATCCGTCGCTC 59.865 52.381 0.00 0.00 0.00 5.03
225 226 0.099968 TTCCTTGTATCCGTCGCTCG 59.900 55.000 0.00 0.00 39.52 5.03
234 235 3.946907 CGTCGCTCGGTTTCCTTT 58.053 55.556 0.00 0.00 35.71 3.11
235 236 2.231820 CGTCGCTCGGTTTCCTTTT 58.768 52.632 0.00 0.00 35.71 2.27
236 237 0.163146 CGTCGCTCGGTTTCCTTTTC 59.837 55.000 0.00 0.00 35.71 2.29
237 238 1.509703 GTCGCTCGGTTTCCTTTTCT 58.490 50.000 0.00 0.00 0.00 2.52
238 239 1.871676 GTCGCTCGGTTTCCTTTTCTT 59.128 47.619 0.00 0.00 0.00 2.52
239 240 2.289820 GTCGCTCGGTTTCCTTTTCTTT 59.710 45.455 0.00 0.00 0.00 2.52
240 241 2.289547 TCGCTCGGTTTCCTTTTCTTTG 59.710 45.455 0.00 0.00 0.00 2.77
241 242 2.394708 GCTCGGTTTCCTTTTCTTTGC 58.605 47.619 0.00 0.00 0.00 3.68
242 243 2.650608 CTCGGTTTCCTTTTCTTTGCG 58.349 47.619 0.00 0.00 0.00 4.85
243 244 2.018515 TCGGTTTCCTTTTCTTTGCGT 58.981 42.857 0.00 0.00 0.00 5.24
244 245 2.424246 TCGGTTTCCTTTTCTTTGCGTT 59.576 40.909 0.00 0.00 0.00 4.84
245 246 2.533942 CGGTTTCCTTTTCTTTGCGTTG 59.466 45.455 0.00 0.00 0.00 4.10
246 247 3.517602 GGTTTCCTTTTCTTTGCGTTGT 58.482 40.909 0.00 0.00 0.00 3.32
247 248 4.674475 GGTTTCCTTTTCTTTGCGTTGTA 58.326 39.130 0.00 0.00 0.00 2.41
248 249 5.103687 GGTTTCCTTTTCTTTGCGTTGTAA 58.896 37.500 0.00 0.00 0.00 2.41
249 250 5.231357 GGTTTCCTTTTCTTTGCGTTGTAAG 59.769 40.000 0.00 0.00 0.00 2.34
250 251 3.959943 TCCTTTTCTTTGCGTTGTAAGC 58.040 40.909 0.00 0.00 0.00 3.09
251 252 2.719046 CCTTTTCTTTGCGTTGTAAGCG 59.281 45.455 0.00 0.00 37.44 4.68
252 253 2.392933 TTTCTTTGCGTTGTAAGCGG 57.607 45.000 0.00 0.00 37.44 5.52
253 254 0.589223 TTCTTTGCGTTGTAAGCGGG 59.411 50.000 0.00 0.00 37.44 6.13
254 255 0.533308 TCTTTGCGTTGTAAGCGGGT 60.533 50.000 0.00 0.00 37.44 5.28
255 256 0.385473 CTTTGCGTTGTAAGCGGGTG 60.385 55.000 0.00 0.00 37.44 4.61
256 257 1.096386 TTTGCGTTGTAAGCGGGTGT 61.096 50.000 0.00 0.00 37.44 4.16
257 258 1.500512 TTGCGTTGTAAGCGGGTGTC 61.501 55.000 0.00 0.00 37.44 3.67
258 259 2.674084 GCGTTGTAAGCGGGTGTCC 61.674 63.158 0.00 0.00 0.00 4.02
259 260 1.005394 CGTTGTAAGCGGGTGTCCT 60.005 57.895 0.00 0.00 0.00 3.85
260 261 0.601841 CGTTGTAAGCGGGTGTCCTT 60.602 55.000 0.00 0.00 0.00 3.36
261 262 0.872388 GTTGTAAGCGGGTGTCCTTG 59.128 55.000 0.00 0.00 0.00 3.61
262 263 0.470766 TTGTAAGCGGGTGTCCTTGT 59.529 50.000 0.00 0.00 0.00 3.16
263 264 1.340088 TGTAAGCGGGTGTCCTTGTA 58.660 50.000 0.00 0.00 0.00 2.41
264 265 1.693062 TGTAAGCGGGTGTCCTTGTAA 59.307 47.619 0.00 0.00 0.00 2.41
265 266 2.303600 TGTAAGCGGGTGTCCTTGTAAT 59.696 45.455 0.00 0.00 0.00 1.89
266 267 2.109425 AAGCGGGTGTCCTTGTAATC 57.891 50.000 0.00 0.00 0.00 1.75
267 268 0.252197 AGCGGGTGTCCTTGTAATCC 59.748 55.000 0.00 0.00 0.00 3.01
268 269 0.252197 GCGGGTGTCCTTGTAATCCT 59.748 55.000 0.00 0.00 0.00 3.24
269 270 2.012051 GCGGGTGTCCTTGTAATCCTG 61.012 57.143 0.00 0.00 0.00 3.86
270 271 1.406887 CGGGTGTCCTTGTAATCCTGG 60.407 57.143 0.00 0.00 0.00 4.45
271 272 1.682087 GGGTGTCCTTGTAATCCTGGC 60.682 57.143 0.00 0.00 0.00 4.85
272 273 1.682087 GGTGTCCTTGTAATCCTGGCC 60.682 57.143 0.00 0.00 0.00 5.36
273 274 0.251916 TGTCCTTGTAATCCTGGCCG 59.748 55.000 0.00 0.00 0.00 6.13
274 275 0.463833 GTCCTTGTAATCCTGGCCGG 60.464 60.000 3.88 3.88 0.00 6.13
275 276 0.912487 TCCTTGTAATCCTGGCCGGT 60.912 55.000 11.58 0.00 0.00 5.28
276 277 0.034477 CCTTGTAATCCTGGCCGGTT 60.034 55.000 11.58 1.23 0.00 4.44
277 278 1.094785 CTTGTAATCCTGGCCGGTTG 58.905 55.000 11.58 0.00 0.00 3.77
278 279 0.693622 TTGTAATCCTGGCCGGTTGA 59.306 50.000 11.58 1.27 0.00 3.18
279 280 0.916086 TGTAATCCTGGCCGGTTGAT 59.084 50.000 11.58 4.00 0.00 2.57
280 281 1.308998 GTAATCCTGGCCGGTTGATG 58.691 55.000 11.58 0.00 0.00 3.07
281 282 0.182537 TAATCCTGGCCGGTTGATGG 59.817 55.000 11.58 0.00 0.00 3.51
291 292 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
292 293 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
293 294 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
294 295 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
295 296 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
296 297 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
303 304 2.734276 TTGTTAATTCAAAGCCGGGC 57.266 45.000 12.11 12.11 0.00 6.13
304 305 1.917872 TGTTAATTCAAAGCCGGGCT 58.082 45.000 17.69 17.69 42.56 5.19
305 306 1.816224 TGTTAATTCAAAGCCGGGCTC 59.184 47.619 24.08 6.82 38.25 4.70
306 307 2.092323 GTTAATTCAAAGCCGGGCTCT 58.908 47.619 24.08 5.15 38.25 4.09
307 308 2.492088 GTTAATTCAAAGCCGGGCTCTT 59.508 45.455 24.08 15.43 38.25 2.85
308 309 1.632589 AATTCAAAGCCGGGCTCTTT 58.367 45.000 24.08 11.39 38.25 2.52
309 310 1.632589 ATTCAAAGCCGGGCTCTTTT 58.367 45.000 24.08 10.57 38.25 2.27
310 311 1.408969 TTCAAAGCCGGGCTCTTTTT 58.591 45.000 24.08 10.16 38.25 1.94
311 312 0.673437 TCAAAGCCGGGCTCTTTTTG 59.327 50.000 24.08 21.74 38.25 2.44
312 313 0.673437 CAAAGCCGGGCTCTTTTTGA 59.327 50.000 24.08 0.00 38.25 2.69
313 314 0.961753 AAAGCCGGGCTCTTTTTGAG 59.038 50.000 24.08 0.00 45.33 3.02
324 325 4.552166 CTCTTTTTGAGCCTTCGTTCAA 57.448 40.909 0.00 0.00 37.43 2.69
325 326 4.920376 CTCTTTTTGAGCCTTCGTTCAAA 58.080 39.130 0.00 0.00 44.47 2.69
425 426 9.086336 GAAACAAAACTGAAATGATGTTTCTCA 57.914 29.630 17.31 0.00 46.44 3.27
426 427 7.992180 ACAAAACTGAAATGATGTTTCTCAC 57.008 32.000 2.67 0.00 33.45 3.51
427 428 7.546358 ACAAAACTGAAATGATGTTTCTCACA 58.454 30.769 2.67 0.00 40.71 3.58
428 429 7.703621 ACAAAACTGAAATGATGTTTCTCACAG 59.296 33.333 0.00 0.00 39.40 3.66
429 430 5.368256 ACTGAAATGATGTTTCTCACAGC 57.632 39.130 0.00 0.00 42.62 4.40
430 431 4.217118 ACTGAAATGATGTTTCTCACAGCC 59.783 41.667 0.00 0.00 41.50 4.85
431 432 4.401022 TGAAATGATGTTTCTCACAGCCT 58.599 39.130 2.67 0.00 41.50 4.58
442 443 1.136695 CTCACAGCCTTTGCCAAACAA 59.863 47.619 0.00 0.00 38.69 2.83
495 496 7.225341 TGTGTATTTGATGAGTATCTGATGTGC 59.775 37.037 0.00 0.00 34.92 4.57
549 550 1.335506 GCGGCGGTTTTGAGAAAATGA 60.336 47.619 9.78 0.00 32.22 2.57
562 563 3.667360 AGAAAATGATGGGCAAAGCAAC 58.333 40.909 0.00 0.00 0.00 4.17
567 568 1.354031 TGATGGGCAAAGCAACTCCTA 59.646 47.619 0.00 0.00 0.00 2.94
569 570 0.771127 TGGGCAAAGCAACTCCTAGT 59.229 50.000 0.00 0.00 0.00 2.57
584 585 4.141482 ACTCCTAGTGGCAGTTTTCAGAAA 60.141 41.667 0.00 0.00 0.00 2.52
586 587 5.385198 TCCTAGTGGCAGTTTTCAGAAATT 58.615 37.500 0.00 0.00 0.00 1.82
588 589 7.001674 TCCTAGTGGCAGTTTTCAGAAATTAA 58.998 34.615 0.00 0.00 0.00 1.40
591 592 5.362430 AGTGGCAGTTTTCAGAAATTAACCA 59.638 36.000 0.00 0.73 0.00 3.67
593 594 6.019075 GTGGCAGTTTTCAGAAATTAACCAAC 60.019 38.462 8.88 0.00 28.44 3.77
660 662 3.652057 ATTACAACTGACTCCCATGGG 57.348 47.619 26.30 26.30 0.00 4.00
714 716 0.738389 ACTTGCCACCTTGTTGTTCG 59.262 50.000 0.00 0.00 0.00 3.95
715 717 0.738389 CTTGCCACCTTGTTGTTCGT 59.262 50.000 0.00 0.00 0.00 3.85
782 784 4.500545 CCCTCTCGTCCATCTCAATAAGTG 60.501 50.000 0.00 0.00 0.00 3.16
784 786 3.126831 CTCGTCCATCTCAATAAGTGCC 58.873 50.000 0.00 0.00 0.00 5.01
826 828 5.261040 TCCTCTGTTTTTGATTCCCATCT 57.739 39.130 0.00 0.00 0.00 2.90
827 829 6.387192 TCCTCTGTTTTTGATTCCCATCTA 57.613 37.500 0.00 0.00 0.00 1.98
828 830 6.973642 TCCTCTGTTTTTGATTCCCATCTAT 58.026 36.000 0.00 0.00 0.00 1.98
829 831 8.101309 TCCTCTGTTTTTGATTCCCATCTATA 57.899 34.615 0.00 0.00 0.00 1.31
856 858 5.588958 AGAGCAAAGAAGCTTTTGTCTTT 57.411 34.783 11.51 8.62 46.75 2.52
976 979 7.255199 ACATAGTCCATATGCTCTCAATCAT 57.745 36.000 0.00 0.00 44.50 2.45
984 987 9.445878 TCCATATGCTCTCAATCATTTCTATTC 57.554 33.333 0.00 0.00 0.00 1.75
1179 1185 2.290641 CCTCACCGACCTCAAACAAAAG 59.709 50.000 0.00 0.00 0.00 2.27
1221 1228 9.902684 AAGCAGAAGGAAATCATATATAGATGG 57.097 33.333 7.48 0.00 0.00 3.51
1253 1520 4.243270 GCATATTAGCTACCCACCTAACG 58.757 47.826 0.00 0.00 0.00 3.18
1254 1521 4.021719 GCATATTAGCTACCCACCTAACGA 60.022 45.833 0.00 0.00 0.00 3.85
1255 1522 5.337330 GCATATTAGCTACCCACCTAACGAT 60.337 44.000 0.00 0.00 0.00 3.73
1259 1526 3.039011 AGCTACCCACCTAACGATGATT 58.961 45.455 0.00 0.00 0.00 2.57
1282 1555 4.448537 TGTGGTCCAAACTTGTTTCTTG 57.551 40.909 0.00 0.00 0.00 3.02
1609 1882 2.357517 AACCTCAACGGCTGCTCG 60.358 61.111 0.00 4.21 35.61 5.03
1762 2041 1.377725 CAGCCAGGCGATCTTTGGT 60.378 57.895 5.55 0.00 34.43 3.67
1933 2212 1.079543 CTTCACCAGGGAGCTCACG 60.080 63.158 17.19 8.44 0.00 4.35
2103 2385 3.090532 GGATCCCGGGAAGCTGGT 61.091 66.667 30.84 10.16 0.00 4.00
2134 2416 4.796225 GTGCTGAGAGAGTACGGC 57.204 61.111 0.00 0.00 38.67 5.68
2324 2612 2.102588 CCCTCGACCGATTCATAACCTT 59.897 50.000 0.00 0.00 0.00 3.50
2423 2722 1.593750 GCTCGCTAGGGCATCACAG 60.594 63.158 1.02 0.00 45.11 3.66
2424 2723 1.593750 CTCGCTAGGGCATCACAGC 60.594 63.158 1.02 0.00 38.60 4.40
2426 2725 1.227764 CGCTAGGGCATCACAGCAT 60.228 57.895 0.00 0.00 38.60 3.79
2429 2728 1.748244 GCTAGGGCATCACAGCATTCA 60.748 52.381 0.00 0.00 38.54 2.57
2430 2729 2.219458 CTAGGGCATCACAGCATTCAG 58.781 52.381 0.00 0.00 35.83 3.02
2495 2795 9.850628 GGTTATGGTTAATCTGAAACTTTTACC 57.149 33.333 0.00 0.00 0.00 2.85
2552 2856 5.774690 TGACTTTGAATTAAGCCATCAACCT 59.225 36.000 0.00 0.00 33.13 3.50
2558 2862 4.778213 ATTAAGCCATCAACCTGCTAGA 57.222 40.909 0.00 0.00 34.29 2.43
2564 2868 5.509498 AGCCATCAACCTGCTAGAAATTAA 58.491 37.500 0.00 0.00 32.56 1.40
2630 2934 1.343506 ACAACGACCGAAAGATACGC 58.656 50.000 0.00 0.00 0.00 4.42
2769 3081 1.463553 AACGCCAAGGGAAAAGCCAG 61.464 55.000 0.00 0.00 38.95 4.85
2847 3159 0.815734 CTCTAAACCCTCGCCGAAGA 59.184 55.000 0.00 0.00 0.00 2.87
2879 3191 3.068691 TCGTCCTGGCTCGAAGGG 61.069 66.667 10.35 0.00 35.35 3.95
3003 3323 0.540133 TTGCCTGCCATGAAGAAGCA 60.540 50.000 0.00 0.00 34.79 3.91
3028 3348 1.369091 CCGATGCCCGAAACAGGAAG 61.369 60.000 0.00 0.00 41.76 3.46
3061 3381 2.119495 AGGGAGCGGTTCACAGATATT 58.881 47.619 0.00 0.00 0.00 1.28
3081 3401 9.454585 AGATATTGAACATTTTTGTGATATGCG 57.545 29.630 0.00 0.00 0.00 4.73
3082 3402 9.236691 GATATTGAACATTTTTGTGATATGCGT 57.763 29.630 0.00 0.00 0.00 5.24
3083 3403 7.887996 ATTGAACATTTTTGTGATATGCGTT 57.112 28.000 0.00 0.00 0.00 4.84
3084 3404 6.687653 TGAACATTTTTGTGATATGCGTTG 57.312 33.333 0.00 0.00 0.00 4.10
3085 3405 6.442112 TGAACATTTTTGTGATATGCGTTGA 58.558 32.000 0.00 0.00 0.00 3.18
3086 3406 6.920210 TGAACATTTTTGTGATATGCGTTGAA 59.080 30.769 0.00 0.00 0.00 2.69
3087 3407 6.689178 ACATTTTTGTGATATGCGTTGAAC 57.311 33.333 0.00 0.00 0.00 3.18
3088 3408 6.212235 ACATTTTTGTGATATGCGTTGAACA 58.788 32.000 0.00 0.00 0.00 3.18
3089 3409 6.699204 ACATTTTTGTGATATGCGTTGAACAA 59.301 30.769 0.00 0.00 0.00 2.83
3090 3410 7.384660 ACATTTTTGTGATATGCGTTGAACAAT 59.615 29.630 0.00 0.00 0.00 2.71
3091 3411 8.858186 CATTTTTGTGATATGCGTTGAACAATA 58.142 29.630 0.00 0.00 0.00 1.90
3092 3412 8.978564 TTTTTGTGATATGCGTTGAACAATAT 57.021 26.923 0.00 0.00 0.00 1.28
3093 3413 8.978564 TTTTGTGATATGCGTTGAACAATATT 57.021 26.923 0.00 0.00 0.00 1.28
3094 3414 8.978564 TTTGTGATATGCGTTGAACAATATTT 57.021 26.923 0.00 0.00 0.00 1.40
3095 3415 8.978564 TTGTGATATGCGTTGAACAATATTTT 57.021 26.923 0.00 0.00 0.00 1.82
3103 3423 9.847706 ATGCGTTGAACAATATTTTAATACACA 57.152 25.926 0.00 0.00 0.00 3.72
3104 3424 9.847706 TGCGTTGAACAATATTTTAATACACAT 57.152 25.926 0.00 0.00 0.00 3.21
3149 3469 9.434420 ACACTGAACAATTTTTGAATTCTGAAA 57.566 25.926 7.05 7.95 0.00 2.69
3190 3510 9.658799 TTTAACAAAATTTGAGAACCATGAACA 57.341 25.926 13.19 0.00 0.00 3.18
3191 3511 9.658799 TTAACAAAATTTGAGAACCATGAACAA 57.341 25.926 13.19 0.00 0.00 2.83
3192 3512 8.735692 AACAAAATTTGAGAACCATGAACAAT 57.264 26.923 13.19 0.00 0.00 2.71
3193 3513 8.369218 ACAAAATTTGAGAACCATGAACAATC 57.631 30.769 13.19 0.00 0.00 2.67
3194 3514 8.206189 ACAAAATTTGAGAACCATGAACAATCT 58.794 29.630 13.19 0.00 0.00 2.40
3195 3515 9.048446 CAAAATTTGAGAACCATGAACAATCTT 57.952 29.630 0.00 0.00 0.00 2.40
3196 3516 9.617523 AAAATTTGAGAACCATGAACAATCTTT 57.382 25.926 0.00 0.00 0.00 2.52
3197 3517 8.597662 AATTTGAGAACCATGAACAATCTTTG 57.402 30.769 0.00 0.00 0.00 2.77
3198 3518 6.957920 TTGAGAACCATGAACAATCTTTGA 57.042 33.333 0.00 0.00 0.00 2.69
3199 3519 6.957920 TGAGAACCATGAACAATCTTTGAA 57.042 33.333 0.00 0.00 0.00 2.69
3200 3520 7.345422 TGAGAACCATGAACAATCTTTGAAA 57.655 32.000 0.00 0.00 0.00 2.69
3201 3521 7.954835 TGAGAACCATGAACAATCTTTGAAAT 58.045 30.769 0.00 0.00 0.00 2.17
3202 3522 8.423349 TGAGAACCATGAACAATCTTTGAAATT 58.577 29.630 0.00 0.00 0.00 1.82
3203 3523 9.912634 GAGAACCATGAACAATCTTTGAAATTA 57.087 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.684134 TGCCTCTGCAAAGGGCCC 62.684 66.667 16.46 16.46 46.66 5.80
11 12 1.065854 ACCATCTGTTACTGCCTCTGC 60.066 52.381 0.00 0.00 38.26 4.26
12 13 2.625737 CACCATCTGTTACTGCCTCTG 58.374 52.381 0.00 0.00 0.00 3.35
13 14 1.556911 CCACCATCTGTTACTGCCTCT 59.443 52.381 0.00 0.00 0.00 3.69
14 15 1.279271 ACCACCATCTGTTACTGCCTC 59.721 52.381 0.00 0.00 0.00 4.70
15 16 1.279271 GACCACCATCTGTTACTGCCT 59.721 52.381 0.00 0.00 0.00 4.75
16 17 1.279271 AGACCACCATCTGTTACTGCC 59.721 52.381 0.00 0.00 0.00 4.85
17 18 2.350522 CAGACCACCATCTGTTACTGC 58.649 52.381 0.00 0.00 41.12 4.40
18 19 2.303022 ACCAGACCACCATCTGTTACTG 59.697 50.000 2.35 0.00 43.99 2.74
19 20 2.567615 GACCAGACCACCATCTGTTACT 59.432 50.000 2.35 0.00 43.99 2.24
20 21 2.354805 GGACCAGACCACCATCTGTTAC 60.355 54.545 2.35 0.00 43.99 2.50
21 22 1.906574 GGACCAGACCACCATCTGTTA 59.093 52.381 2.35 0.00 43.99 2.41
22 23 0.693049 GGACCAGACCACCATCTGTT 59.307 55.000 2.35 0.00 43.99 3.16
23 24 0.178891 AGGACCAGACCACCATCTGT 60.179 55.000 0.00 0.00 43.99 3.41
24 25 0.987294 AAGGACCAGACCACCATCTG 59.013 55.000 0.00 0.00 44.91 2.90
25 26 0.987294 CAAGGACCAGACCACCATCT 59.013 55.000 0.00 0.00 0.00 2.90
26 27 0.678048 GCAAGGACCAGACCACCATC 60.678 60.000 0.00 0.00 0.00 3.51
27 28 1.136329 AGCAAGGACCAGACCACCAT 61.136 55.000 0.00 0.00 0.00 3.55
28 29 1.770110 AGCAAGGACCAGACCACCA 60.770 57.895 0.00 0.00 0.00 4.17
29 30 1.302832 CAGCAAGGACCAGACCACC 60.303 63.158 0.00 0.00 0.00 4.61
30 31 1.302832 CCAGCAAGGACCAGACCAC 60.303 63.158 0.00 0.00 41.22 4.16
31 32 3.160585 CCAGCAAGGACCAGACCA 58.839 61.111 0.00 0.00 41.22 4.02
32 33 2.360475 GCCAGCAAGGACCAGACC 60.360 66.667 0.00 0.00 41.22 3.85
33 34 1.376553 GAGCCAGCAAGGACCAGAC 60.377 63.158 0.00 0.00 41.22 3.51
34 35 2.596851 GGAGCCAGCAAGGACCAGA 61.597 63.158 0.00 0.00 41.22 3.86
35 36 2.045536 GGAGCCAGCAAGGACCAG 60.046 66.667 0.00 0.00 41.22 4.00
36 37 4.020617 CGGAGCCAGCAAGGACCA 62.021 66.667 0.00 0.00 41.22 4.02
37 38 3.672295 CTCGGAGCCAGCAAGGACC 62.672 68.421 0.00 1.37 41.22 4.46
38 39 2.125350 CTCGGAGCCAGCAAGGAC 60.125 66.667 0.00 0.00 41.22 3.85
39 40 3.393970 CCTCGGAGCCAGCAAGGA 61.394 66.667 0.00 0.00 41.22 3.36
40 41 4.479993 CCCTCGGAGCCAGCAAGG 62.480 72.222 0.00 0.00 41.84 3.61
41 42 3.710722 ACCCTCGGAGCCAGCAAG 61.711 66.667 0.00 0.00 0.00 4.01
42 43 4.020617 CACCCTCGGAGCCAGCAA 62.021 66.667 0.00 0.00 0.00 3.91
48 49 4.767255 CACAGCCACCCTCGGAGC 62.767 72.222 0.00 0.00 0.00 4.70
49 50 2.303549 GATCACAGCCACCCTCGGAG 62.304 65.000 0.00 0.00 0.00 4.63
50 51 2.284625 ATCACAGCCACCCTCGGA 60.285 61.111 0.00 0.00 0.00 4.55
51 52 2.187946 GATCACAGCCACCCTCGG 59.812 66.667 0.00 0.00 0.00 4.63
52 53 1.448540 GTGATCACAGCCACCCTCG 60.449 63.158 21.07 0.00 0.00 4.63
53 54 1.448540 CGTGATCACAGCCACCCTC 60.449 63.158 24.93 0.00 0.00 4.30
54 55 1.480212 TTCGTGATCACAGCCACCCT 61.480 55.000 24.93 0.00 0.00 4.34
55 56 1.003839 TTCGTGATCACAGCCACCC 60.004 57.895 24.93 0.00 0.00 4.61
56 57 1.639298 GCTTCGTGATCACAGCCACC 61.639 60.000 24.93 4.78 0.00 4.61
57 58 0.671781 AGCTTCGTGATCACAGCCAC 60.672 55.000 26.24 12.76 32.61 5.01
58 59 0.035317 AAGCTTCGTGATCACAGCCA 59.965 50.000 26.24 7.03 32.61 4.75
59 60 0.445436 CAAGCTTCGTGATCACAGCC 59.555 55.000 26.24 13.81 32.61 4.85
60 61 0.179205 GCAAGCTTCGTGATCACAGC 60.179 55.000 23.85 23.85 32.43 4.40
61 62 0.094216 CGCAAGCTTCGTGATCACAG 59.906 55.000 24.93 16.39 0.00 3.66
62 63 2.153039 CGCAAGCTTCGTGATCACA 58.847 52.632 24.93 9.94 0.00 3.58
75 76 1.154225 GAATGAACCACCGCGCAAG 60.154 57.895 8.75 0.00 43.44 4.01
76 77 2.622011 GGAATGAACCACCGCGCAA 61.622 57.895 8.75 0.00 0.00 4.85
77 78 3.053291 GGAATGAACCACCGCGCA 61.053 61.111 8.75 0.00 0.00 6.09
78 79 2.746277 AGGAATGAACCACCGCGC 60.746 61.111 0.00 0.00 0.00 6.86
79 80 2.106683 GGAGGAATGAACCACCGCG 61.107 63.158 0.00 0.00 31.72 6.46
80 81 1.749258 GGGAGGAATGAACCACCGC 60.749 63.158 0.00 0.00 40.69 5.68
81 82 0.037590 TTGGGAGGAATGAACCACCG 59.962 55.000 0.00 0.00 40.69 4.94
82 83 1.354368 TCTTGGGAGGAATGAACCACC 59.646 52.381 0.00 0.00 39.41 4.61
83 84 2.437413 GTCTTGGGAGGAATGAACCAC 58.563 52.381 0.00 0.00 31.65 4.16
84 85 1.354368 GGTCTTGGGAGGAATGAACCA 59.646 52.381 0.00 0.00 0.00 3.67
85 86 1.341089 GGGTCTTGGGAGGAATGAACC 60.341 57.143 0.00 0.00 0.00 3.62
86 87 1.636003 AGGGTCTTGGGAGGAATGAAC 59.364 52.381 0.00 0.00 0.00 3.18
87 88 2.059756 AGGGTCTTGGGAGGAATGAA 57.940 50.000 0.00 0.00 0.00 2.57
88 89 2.045885 ACTAGGGTCTTGGGAGGAATGA 59.954 50.000 0.00 0.00 0.00 2.57
89 90 2.482494 ACTAGGGTCTTGGGAGGAATG 58.518 52.381 0.00 0.00 0.00 2.67
90 91 2.972153 ACTAGGGTCTTGGGAGGAAT 57.028 50.000 0.00 0.00 0.00 3.01
91 92 2.735259 AACTAGGGTCTTGGGAGGAA 57.265 50.000 0.00 0.00 0.00 3.36
92 93 2.547990 GAAACTAGGGTCTTGGGAGGA 58.452 52.381 0.00 0.00 0.00 3.71
93 94 1.207329 CGAAACTAGGGTCTTGGGAGG 59.793 57.143 0.00 0.00 0.00 4.30
94 95 1.900486 ACGAAACTAGGGTCTTGGGAG 59.100 52.381 0.00 0.00 0.00 4.30
95 96 2.019807 ACGAAACTAGGGTCTTGGGA 57.980 50.000 0.00 0.00 0.00 4.37
96 97 2.302157 AGAACGAAACTAGGGTCTTGGG 59.698 50.000 0.00 0.00 0.00 4.12
97 98 3.244112 ACAGAACGAAACTAGGGTCTTGG 60.244 47.826 0.00 0.00 0.00 3.61
98 99 3.991367 ACAGAACGAAACTAGGGTCTTG 58.009 45.455 0.00 0.00 0.00 3.02
99 100 4.377897 CAACAGAACGAAACTAGGGTCTT 58.622 43.478 0.00 0.00 0.00 3.01
100 101 3.244112 CCAACAGAACGAAACTAGGGTCT 60.244 47.826 0.00 0.00 0.00 3.85
101 102 3.064931 CCAACAGAACGAAACTAGGGTC 58.935 50.000 0.00 0.00 0.00 4.46
102 103 2.436911 ACCAACAGAACGAAACTAGGGT 59.563 45.455 0.00 0.00 0.00 4.34
103 104 2.806244 CACCAACAGAACGAAACTAGGG 59.194 50.000 0.00 0.00 0.00 3.53
104 105 3.463944 ACACCAACAGAACGAAACTAGG 58.536 45.455 0.00 0.00 0.00 3.02
105 106 4.684703 CCTACACCAACAGAACGAAACTAG 59.315 45.833 0.00 0.00 0.00 2.57
106 107 4.099881 ACCTACACCAACAGAACGAAACTA 59.900 41.667 0.00 0.00 0.00 2.24
107 108 3.118519 ACCTACACCAACAGAACGAAACT 60.119 43.478 0.00 0.00 0.00 2.66
108 109 3.200483 ACCTACACCAACAGAACGAAAC 58.800 45.455 0.00 0.00 0.00 2.78
109 110 3.460103 GACCTACACCAACAGAACGAAA 58.540 45.455 0.00 0.00 0.00 3.46
110 111 2.544277 CGACCTACACCAACAGAACGAA 60.544 50.000 0.00 0.00 0.00 3.85
111 112 1.001048 CGACCTACACCAACAGAACGA 60.001 52.381 0.00 0.00 0.00 3.85
112 113 1.269413 ACGACCTACACCAACAGAACG 60.269 52.381 0.00 0.00 0.00 3.95
113 114 2.401351 GACGACCTACACCAACAGAAC 58.599 52.381 0.00 0.00 0.00 3.01
114 115 1.342174 GGACGACCTACACCAACAGAA 59.658 52.381 0.00 0.00 0.00 3.02
115 116 0.963962 GGACGACCTACACCAACAGA 59.036 55.000 0.00 0.00 0.00 3.41
116 117 0.677288 TGGACGACCTACACCAACAG 59.323 55.000 5.33 0.00 37.04 3.16
117 118 0.677288 CTGGACGACCTACACCAACA 59.323 55.000 5.33 0.00 37.04 3.33
118 119 0.677842 ACTGGACGACCTACACCAAC 59.322 55.000 5.33 0.00 37.04 3.77
119 120 2.165167 CTACTGGACGACCTACACCAA 58.835 52.381 5.33 0.00 37.04 3.67
120 121 1.615116 CCTACTGGACGACCTACACCA 60.615 57.143 5.33 0.00 37.04 4.17
121 122 1.101331 CCTACTGGACGACCTACACC 58.899 60.000 5.33 0.00 37.04 4.16
122 123 1.101331 CCCTACTGGACGACCTACAC 58.899 60.000 5.33 0.00 35.39 2.90
123 124 0.700564 ACCCTACTGGACGACCTACA 59.299 55.000 5.33 0.00 38.00 2.74
124 125 1.101331 CACCCTACTGGACGACCTAC 58.899 60.000 5.33 0.00 38.00 3.18
125 126 0.700564 ACACCCTACTGGACGACCTA 59.299 55.000 5.33 0.00 38.00 3.08
126 127 0.178941 AACACCCTACTGGACGACCT 60.179 55.000 5.33 0.00 38.00 3.85
127 128 0.037605 CAACACCCTACTGGACGACC 60.038 60.000 0.00 0.00 38.00 4.79
128 129 0.037605 CCAACACCCTACTGGACGAC 60.038 60.000 0.00 0.00 38.00 4.34
129 130 0.470456 ACCAACACCCTACTGGACGA 60.470 55.000 0.00 0.00 38.00 4.20
130 131 1.203994 CTACCAACACCCTACTGGACG 59.796 57.143 0.00 0.00 38.00 4.79
131 132 1.066358 GCTACCAACACCCTACTGGAC 60.066 57.143 0.00 0.00 38.00 4.02
132 133 1.272807 GCTACCAACACCCTACTGGA 58.727 55.000 0.00 0.00 38.00 3.86
133 134 0.981183 TGCTACCAACACCCTACTGG 59.019 55.000 0.00 0.00 41.37 4.00
134 135 1.676014 GCTGCTACCAACACCCTACTG 60.676 57.143 0.00 0.00 0.00 2.74
135 136 0.613777 GCTGCTACCAACACCCTACT 59.386 55.000 0.00 0.00 0.00 2.57
136 137 0.739813 CGCTGCTACCAACACCCTAC 60.740 60.000 0.00 0.00 0.00 3.18
137 138 1.189524 ACGCTGCTACCAACACCCTA 61.190 55.000 0.00 0.00 0.00 3.53
138 139 2.347490 CGCTGCTACCAACACCCT 59.653 61.111 0.00 0.00 0.00 4.34
139 140 2.032071 ACGCTGCTACCAACACCC 59.968 61.111 0.00 0.00 0.00 4.61
140 141 0.673644 ATCACGCTGCTACCAACACC 60.674 55.000 0.00 0.00 0.00 4.16
141 142 0.443869 CATCACGCTGCTACCAACAC 59.556 55.000 0.00 0.00 0.00 3.32
142 143 0.320050 TCATCACGCTGCTACCAACA 59.680 50.000 0.00 0.00 0.00 3.33
143 144 1.328680 CATCATCACGCTGCTACCAAC 59.671 52.381 0.00 0.00 0.00 3.77
144 145 1.655484 CATCATCACGCTGCTACCAA 58.345 50.000 0.00 0.00 0.00 3.67
145 146 0.811219 GCATCATCACGCTGCTACCA 60.811 55.000 0.00 0.00 33.84 3.25
146 147 1.502163 GGCATCATCACGCTGCTACC 61.502 60.000 0.00 0.00 36.94 3.18
147 148 0.531532 AGGCATCATCACGCTGCTAC 60.532 55.000 0.00 0.00 36.94 3.58
148 149 0.178767 AAGGCATCATCACGCTGCTA 59.821 50.000 0.00 0.00 36.94 3.49
149 150 1.077930 AAGGCATCATCACGCTGCT 60.078 52.632 0.00 0.00 36.94 4.24
150 151 1.063649 CAAGGCATCATCACGCTGC 59.936 57.895 0.00 0.00 35.96 5.25
151 152 1.725665 CCAAGGCATCATCACGCTG 59.274 57.895 0.00 0.00 0.00 5.18
152 153 2.117156 GCCAAGGCATCATCACGCT 61.117 57.895 6.14 0.00 41.49 5.07
153 154 2.056481 GAGCCAAGGCATCATCACGC 62.056 60.000 14.40 0.00 44.88 5.34
154 155 0.745486 TGAGCCAAGGCATCATCACG 60.745 55.000 14.40 0.00 44.88 4.35
155 156 0.737219 GTGAGCCAAGGCATCATCAC 59.263 55.000 14.40 13.73 44.88 3.06
156 157 0.622136 AGTGAGCCAAGGCATCATCA 59.378 50.000 14.40 5.26 44.88 3.07
157 158 1.134159 AGAGTGAGCCAAGGCATCATC 60.134 52.381 14.40 11.98 44.88 2.92
158 159 0.917533 AGAGTGAGCCAAGGCATCAT 59.082 50.000 14.40 4.98 44.88 2.45
159 160 0.035725 CAGAGTGAGCCAAGGCATCA 60.036 55.000 14.40 10.93 44.88 3.07
160 161 0.035630 ACAGAGTGAGCCAAGGCATC 60.036 55.000 14.40 8.50 44.88 3.91
161 162 0.403271 AACAGAGTGAGCCAAGGCAT 59.597 50.000 14.40 0.00 44.88 4.40
162 163 0.535780 CAACAGAGTGAGCCAAGGCA 60.536 55.000 14.40 0.00 44.88 4.75
163 164 1.860484 GCAACAGAGTGAGCCAAGGC 61.860 60.000 2.02 2.02 42.33 4.35
164 165 0.250640 AGCAACAGAGTGAGCCAAGG 60.251 55.000 0.00 0.00 0.00 3.61
165 166 0.873054 CAGCAACAGAGTGAGCCAAG 59.127 55.000 0.00 0.00 0.00 3.61
166 167 1.168407 GCAGCAACAGAGTGAGCCAA 61.168 55.000 0.00 0.00 0.00 4.52
167 168 1.598962 GCAGCAACAGAGTGAGCCA 60.599 57.895 0.00 0.00 0.00 4.75
168 169 2.331132 GGCAGCAACAGAGTGAGCC 61.331 63.158 0.00 0.00 35.15 4.70
169 170 0.888285 AAGGCAGCAACAGAGTGAGC 60.888 55.000 0.00 0.00 0.00 4.26
170 171 0.873054 CAAGGCAGCAACAGAGTGAG 59.127 55.000 0.00 0.00 0.00 3.51
171 172 0.469494 TCAAGGCAGCAACAGAGTGA 59.531 50.000 0.00 0.00 0.00 3.41
172 173 0.873054 CTCAAGGCAGCAACAGAGTG 59.127 55.000 0.00 0.00 0.00 3.51
173 174 0.471617 ACTCAAGGCAGCAACAGAGT 59.528 50.000 0.00 0.00 0.00 3.24
174 175 1.266175 CAACTCAAGGCAGCAACAGAG 59.734 52.381 0.00 0.00 0.00 3.35
175 176 1.311859 CAACTCAAGGCAGCAACAGA 58.688 50.000 0.00 0.00 0.00 3.41
176 177 1.027357 ACAACTCAAGGCAGCAACAG 58.973 50.000 0.00 0.00 0.00 3.16
177 178 1.473258 AACAACTCAAGGCAGCAACA 58.527 45.000 0.00 0.00 0.00 3.33
178 179 2.584492 AAACAACTCAAGGCAGCAAC 57.416 45.000 0.00 0.00 0.00 4.17
179 180 2.891112 CAAAACAACTCAAGGCAGCAA 58.109 42.857 0.00 0.00 0.00 3.91
180 181 1.471327 GCAAAACAACTCAAGGCAGCA 60.471 47.619 0.00 0.00 0.00 4.41
181 182 1.202452 AGCAAAACAACTCAAGGCAGC 60.202 47.619 0.00 0.00 0.00 5.25
182 183 2.861935 CAAGCAAAACAACTCAAGGCAG 59.138 45.455 0.00 0.00 0.00 4.85
183 184 2.495270 TCAAGCAAAACAACTCAAGGCA 59.505 40.909 0.00 0.00 0.00 4.75
184 185 3.118542 CTCAAGCAAAACAACTCAAGGC 58.881 45.455 0.00 0.00 0.00 4.35
185 186 4.376340 ACTCAAGCAAAACAACTCAAGG 57.624 40.909 0.00 0.00 0.00 3.61
186 187 4.800471 GGAACTCAAGCAAAACAACTCAAG 59.200 41.667 0.00 0.00 0.00 3.02
187 188 4.462483 AGGAACTCAAGCAAAACAACTCAA 59.538 37.500 0.00 0.00 0.00 3.02
188 189 4.016444 AGGAACTCAAGCAAAACAACTCA 58.984 39.130 0.00 0.00 0.00 3.41
189 190 4.639135 AGGAACTCAAGCAAAACAACTC 57.361 40.909 0.00 0.00 0.00 3.01
190 191 4.220602 ACAAGGAACTCAAGCAAAACAACT 59.779 37.500 0.00 0.00 38.49 3.16
191 192 4.494484 ACAAGGAACTCAAGCAAAACAAC 58.506 39.130 0.00 0.00 38.49 3.32
192 193 4.799564 ACAAGGAACTCAAGCAAAACAA 57.200 36.364 0.00 0.00 38.49 2.83
193 194 5.009610 GGATACAAGGAACTCAAGCAAAACA 59.990 40.000 0.00 0.00 38.49 2.83
194 195 5.461526 GGATACAAGGAACTCAAGCAAAAC 58.538 41.667 0.00 0.00 38.49 2.43
195 196 4.215399 CGGATACAAGGAACTCAAGCAAAA 59.785 41.667 0.00 0.00 38.49 2.44
196 197 3.751175 CGGATACAAGGAACTCAAGCAAA 59.249 43.478 0.00 0.00 38.49 3.68
197 198 3.244422 ACGGATACAAGGAACTCAAGCAA 60.244 43.478 0.00 0.00 38.49 3.91
198 199 2.301870 ACGGATACAAGGAACTCAAGCA 59.698 45.455 0.00 0.00 38.49 3.91
199 200 2.930682 GACGGATACAAGGAACTCAAGC 59.069 50.000 0.00 0.00 38.49 4.01
200 201 3.179830 CGACGGATACAAGGAACTCAAG 58.820 50.000 0.00 0.00 38.49 3.02
201 202 2.673043 GCGACGGATACAAGGAACTCAA 60.673 50.000 0.00 0.00 38.49 3.02
202 203 1.135199 GCGACGGATACAAGGAACTCA 60.135 52.381 0.00 0.00 38.49 3.41
203 204 1.134560 AGCGACGGATACAAGGAACTC 59.865 52.381 0.00 0.00 38.49 3.01
204 205 4.392644 CGAGCGACGGATACAAGGAACT 62.393 54.545 0.00 0.00 38.47 3.01
205 206 1.557651 GAGCGACGGATACAAGGAAC 58.442 55.000 0.00 0.00 0.00 3.62
206 207 0.099968 CGAGCGACGGATACAAGGAA 59.900 55.000 0.00 0.00 38.46 3.36
207 208 1.725665 CGAGCGACGGATACAAGGA 59.274 57.895 0.00 0.00 38.46 3.36
208 209 4.303853 CGAGCGACGGATACAAGG 57.696 61.111 0.00 0.00 38.46 3.61
217 218 0.163146 GAAAAGGAAACCGAGCGACG 59.837 55.000 0.00 0.00 42.18 5.12
218 219 1.509703 AGAAAAGGAAACCGAGCGAC 58.490 50.000 0.00 0.00 0.00 5.19
219 220 2.249844 AAGAAAAGGAAACCGAGCGA 57.750 45.000 0.00 0.00 0.00 4.93
220 221 2.650608 CAAAGAAAAGGAAACCGAGCG 58.349 47.619 0.00 0.00 0.00 5.03
221 222 2.394708 GCAAAGAAAAGGAAACCGAGC 58.605 47.619 0.00 0.00 0.00 5.03
222 223 2.032924 ACGCAAAGAAAAGGAAACCGAG 59.967 45.455 0.00 0.00 0.00 4.63
223 224 2.018515 ACGCAAAGAAAAGGAAACCGA 58.981 42.857 0.00 0.00 0.00 4.69
224 225 2.485266 ACGCAAAGAAAAGGAAACCG 57.515 45.000 0.00 0.00 0.00 4.44
225 226 3.517602 ACAACGCAAAGAAAAGGAAACC 58.482 40.909 0.00 0.00 0.00 3.27
226 227 5.276207 GCTTACAACGCAAAGAAAAGGAAAC 60.276 40.000 0.00 0.00 0.00 2.78
227 228 4.801516 GCTTACAACGCAAAGAAAAGGAAA 59.198 37.500 0.00 0.00 0.00 3.13
228 229 4.356289 GCTTACAACGCAAAGAAAAGGAA 58.644 39.130 0.00 0.00 0.00 3.36
229 230 3.547214 CGCTTACAACGCAAAGAAAAGGA 60.547 43.478 0.00 0.00 0.00 3.36
230 231 2.719046 CGCTTACAACGCAAAGAAAAGG 59.281 45.455 0.00 0.00 0.00 3.11
231 232 2.719046 CCGCTTACAACGCAAAGAAAAG 59.281 45.455 0.00 0.00 0.00 2.27
232 233 2.541999 CCCGCTTACAACGCAAAGAAAA 60.542 45.455 0.00 0.00 0.00 2.29
233 234 1.002251 CCCGCTTACAACGCAAAGAAA 60.002 47.619 0.00 0.00 0.00 2.52
234 235 0.589223 CCCGCTTACAACGCAAAGAA 59.411 50.000 0.00 0.00 0.00 2.52
235 236 0.533308 ACCCGCTTACAACGCAAAGA 60.533 50.000 0.00 0.00 0.00 2.52
236 237 0.385473 CACCCGCTTACAACGCAAAG 60.385 55.000 0.00 0.00 0.00 2.77
237 238 1.096386 ACACCCGCTTACAACGCAAA 61.096 50.000 0.00 0.00 0.00 3.68
238 239 1.500512 GACACCCGCTTACAACGCAA 61.501 55.000 0.00 0.00 0.00 4.85
239 240 1.957186 GACACCCGCTTACAACGCA 60.957 57.895 0.00 0.00 0.00 5.24
240 241 2.674084 GGACACCCGCTTACAACGC 61.674 63.158 0.00 0.00 0.00 4.84
241 242 0.601841 AAGGACACCCGCTTACAACG 60.602 55.000 0.00 0.00 37.58 4.10
242 243 0.872388 CAAGGACACCCGCTTACAAC 59.128 55.000 0.00 0.00 37.58 3.32
243 244 0.470766 ACAAGGACACCCGCTTACAA 59.529 50.000 0.00 0.00 37.58 2.41
244 245 1.340088 TACAAGGACACCCGCTTACA 58.660 50.000 0.00 0.00 37.58 2.41
245 246 2.460757 TTACAAGGACACCCGCTTAC 57.539 50.000 0.00 0.00 37.58 2.34
246 247 2.093341 GGATTACAAGGACACCCGCTTA 60.093 50.000 0.00 0.00 37.58 3.09
247 248 1.339727 GGATTACAAGGACACCCGCTT 60.340 52.381 0.00 0.00 37.58 4.68
248 249 0.252197 GGATTACAAGGACACCCGCT 59.748 55.000 0.00 0.00 37.58 5.52
249 250 0.252197 AGGATTACAAGGACACCCGC 59.748 55.000 0.00 0.00 37.58 6.13
250 251 1.406887 CCAGGATTACAAGGACACCCG 60.407 57.143 0.00 0.00 37.58 5.28
251 252 1.682087 GCCAGGATTACAAGGACACCC 60.682 57.143 0.00 0.00 0.00 4.61
252 253 1.682087 GGCCAGGATTACAAGGACACC 60.682 57.143 0.00 0.00 0.00 4.16
253 254 1.751437 GGCCAGGATTACAAGGACAC 58.249 55.000 0.00 0.00 0.00 3.67
254 255 0.251916 CGGCCAGGATTACAAGGACA 59.748 55.000 2.24 0.00 0.00 4.02
255 256 0.463833 CCGGCCAGGATTACAAGGAC 60.464 60.000 2.24 0.00 45.00 3.85
256 257 0.912487 ACCGGCCAGGATTACAAGGA 60.912 55.000 18.74 0.00 45.00 3.36
257 258 0.034477 AACCGGCCAGGATTACAAGG 60.034 55.000 18.74 2.64 45.00 3.61
258 259 1.094785 CAACCGGCCAGGATTACAAG 58.905 55.000 18.74 0.00 45.00 3.16
259 260 0.693622 TCAACCGGCCAGGATTACAA 59.306 50.000 18.74 0.00 45.00 2.41
260 261 0.916086 ATCAACCGGCCAGGATTACA 59.084 50.000 18.74 0.75 45.00 2.41
261 262 1.308998 CATCAACCGGCCAGGATTAC 58.691 55.000 18.74 0.00 45.00 1.89
262 263 0.182537 CCATCAACCGGCCAGGATTA 59.817 55.000 18.74 1.01 45.00 1.75
263 264 1.076777 CCATCAACCGGCCAGGATT 60.077 57.895 18.74 7.79 45.00 3.01
264 265 2.597340 CCATCAACCGGCCAGGAT 59.403 61.111 18.74 5.67 45.00 3.24
265 266 4.424711 GCCATCAACCGGCCAGGA 62.425 66.667 18.74 3.02 44.22 3.86
271 272 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
272 273 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
273 274 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
283 284 2.630580 AGCCCGGCTTTGAATTAACAAA 59.369 40.909 5.94 0.00 33.89 2.83
284 285 2.230266 GAGCCCGGCTTTGAATTAACAA 59.770 45.455 14.70 0.00 39.88 2.83
285 286 1.816224 GAGCCCGGCTTTGAATTAACA 59.184 47.619 14.70 0.00 39.88 2.41
286 287 2.092323 AGAGCCCGGCTTTGAATTAAC 58.908 47.619 14.70 0.00 39.88 2.01
287 288 2.507407 AGAGCCCGGCTTTGAATTAA 57.493 45.000 14.70 0.00 39.88 1.40
288 289 2.507407 AAGAGCCCGGCTTTGAATTA 57.493 45.000 14.70 0.00 39.88 1.40
289 290 1.632589 AAAGAGCCCGGCTTTGAATT 58.367 45.000 14.70 2.03 39.88 2.17
290 291 1.632589 AAAAGAGCCCGGCTTTGAAT 58.367 45.000 14.70 0.00 39.88 2.57
291 292 1.068434 CAAAAAGAGCCCGGCTTTGAA 59.932 47.619 14.70 0.00 39.88 2.69
292 293 0.673437 CAAAAAGAGCCCGGCTTTGA 59.327 50.000 14.70 0.00 39.88 2.69
293 294 0.673437 TCAAAAAGAGCCCGGCTTTG 59.327 50.000 14.70 13.91 39.88 2.77
294 295 0.961753 CTCAAAAAGAGCCCGGCTTT 59.038 50.000 14.70 4.65 39.88 3.51
295 296 2.646121 CTCAAAAAGAGCCCGGCTT 58.354 52.632 14.70 0.50 39.88 4.35
296 297 4.404691 CTCAAAAAGAGCCCGGCT 57.595 55.556 13.16 13.16 43.88 5.52
303 304 5.339990 TTTTGAACGAAGGCTCAAAAAGAG 58.660 37.500 8.58 0.00 44.49 2.85
304 305 4.974368 TTTGAACGAAGGCTCAAAAAGA 57.026 36.364 0.00 0.00 39.39 2.52
329 330 9.829507 TCACAAAAGAAATGGAAATTACATGTT 57.170 25.926 2.30 0.00 0.00 2.71
375 376 9.632807 TTCAAAGAAATGGAAAATACATAACGG 57.367 29.630 0.00 0.00 0.00 4.44
410 411 5.382618 AAGGCTGTGAGAAACATCATTTC 57.617 39.130 0.00 0.00 38.39 2.17
425 426 1.761784 TCATTGTTTGGCAAAGGCTGT 59.238 42.857 13.94 0.00 40.91 4.40
426 427 2.224113 ACTCATTGTTTGGCAAAGGCTG 60.224 45.455 13.94 10.59 40.91 4.85
427 428 2.041701 ACTCATTGTTTGGCAAAGGCT 58.958 42.857 13.94 0.00 40.91 4.58
428 429 2.137523 CACTCATTGTTTGGCAAAGGC 58.862 47.619 13.94 3.10 40.91 4.35
429 430 3.125316 CACACTCATTGTTTGGCAAAGG 58.875 45.455 13.94 3.84 40.91 3.11
430 431 4.044336 TCACACTCATTGTTTGGCAAAG 57.956 40.909 13.94 2.61 40.91 2.77
431 432 4.099113 TCATCACACTCATTGTTTGGCAAA 59.901 37.500 8.93 8.93 40.91 3.68
442 443 8.784043 CAACATCATATTCATCATCACACTCAT 58.216 33.333 0.00 0.00 0.00 2.90
495 496 8.810427 CGATTTCTCAAATCCCAATACAAAATG 58.190 33.333 3.87 0.00 43.39 2.32
531 532 3.253230 CCATCATTTTCTCAAAACCGCC 58.747 45.455 0.00 0.00 32.37 6.13
533 534 3.253230 GCCCATCATTTTCTCAAAACCG 58.747 45.455 0.00 0.00 32.37 4.44
549 550 1.355720 ACTAGGAGTTGCTTTGCCCAT 59.644 47.619 0.00 0.00 0.00 4.00
562 563 3.685139 TCTGAAAACTGCCACTAGGAG 57.315 47.619 0.00 0.00 36.89 3.69
567 568 5.362430 TGGTTAATTTCTGAAAACTGCCACT 59.638 36.000 6.95 0.00 0.00 4.00
569 570 5.860941 TGGTTAATTTCTGAAAACTGCCA 57.139 34.783 6.95 10.46 0.00 4.92
586 587 8.919145 AGTTGGTTATTTCATTTGAGTTGGTTA 58.081 29.630 0.00 0.00 0.00 2.85
588 589 7.360113 AGTTGGTTATTTCATTTGAGTTGGT 57.640 32.000 0.00 0.00 0.00 3.67
591 592 8.017418 TCCAAGTTGGTTATTTCATTTGAGTT 57.983 30.769 21.35 0.00 39.03 3.01
593 594 8.885494 TTTCCAAGTTGGTTATTTCATTTGAG 57.115 30.769 21.35 0.00 39.03 3.02
660 662 2.801679 GTTCAGAGCAGAGCAGATATGC 59.198 50.000 3.54 3.54 46.81 3.14
673 675 2.614829 TTATAAGGCCGGTTCAGAGC 57.385 50.000 1.90 0.00 0.00 4.09
714 716 5.502153 TGCTCTACGAGATAGGAAAGAAC 57.498 43.478 0.00 0.00 0.00 3.01
715 717 6.071560 TGTTTGCTCTACGAGATAGGAAAGAA 60.072 38.462 0.00 0.00 32.26 2.52
782 784 5.048921 GGAAATACCTAATTAAGAAGCGGGC 60.049 44.000 0.00 0.00 35.41 6.13
827 829 9.103861 GACAAAAGCTTCTTTGCTCTACTATAT 57.896 33.333 10.19 0.00 43.24 0.86
828 830 8.314751 AGACAAAAGCTTCTTTGCTCTACTATA 58.685 33.333 10.19 0.00 43.24 1.31
829 831 7.164803 AGACAAAAGCTTCTTTGCTCTACTAT 58.835 34.615 10.19 0.00 43.24 2.12
836 838 5.359292 AGAGAAAGACAAAAGCTTCTTTGCT 59.641 36.000 14.35 11.15 41.21 3.91
942 945 9.658799 GAGCATATGGACTATGTACAATACATT 57.341 33.333 0.00 0.00 46.69 2.71
944 947 8.422577 AGAGCATATGGACTATGTACAATACA 57.577 34.615 0.00 0.00 43.80 2.29
945 948 8.523658 TGAGAGCATATGGACTATGTACAATAC 58.476 37.037 0.00 0.00 39.61 1.89
946 949 8.650143 TGAGAGCATATGGACTATGTACAATA 57.350 34.615 0.00 0.00 39.61 1.90
947 950 7.544804 TGAGAGCATATGGACTATGTACAAT 57.455 36.000 0.00 0.00 39.61 2.71
948 951 6.976934 TGAGAGCATATGGACTATGTACAA 57.023 37.500 0.00 0.00 39.61 2.41
950 953 7.606349 TGATTGAGAGCATATGGACTATGTAC 58.394 38.462 4.56 0.00 39.61 2.90
976 979 3.231818 CCTCGGAGCCTAGGAATAGAAA 58.768 50.000 14.75 0.00 34.58 2.52
1153 1159 1.816863 TTGAGGTCGGTGAGGTGCTC 61.817 60.000 0.00 0.00 0.00 4.26
1155 1161 1.070786 TTTGAGGTCGGTGAGGTGC 59.929 57.895 0.00 0.00 0.00 5.01
1179 1185 3.045601 TGCTTACAGAAGGACTTGAGC 57.954 47.619 0.00 0.00 32.84 4.26
1221 1228 9.099454 GTGGGTAGCTAATATGCACTATATTTC 57.901 37.037 0.00 0.00 41.20 2.17
1253 1520 6.515272 ACAAGTTTGGACCACATAATCATC 57.485 37.500 0.00 0.00 0.00 2.92
1254 1521 6.916360 AACAAGTTTGGACCACATAATCAT 57.084 33.333 0.00 0.00 0.00 2.45
1255 1522 6.549364 AGAAACAAGTTTGGACCACATAATCA 59.451 34.615 2.45 0.00 32.11 2.57
1259 1526 5.451242 GCAAGAAACAAGTTTGGACCACATA 60.451 40.000 2.45 0.00 32.11 2.29
1282 1555 0.034476 TCATCTGGCCTGATCATCGC 59.966 55.000 21.33 0.56 0.00 4.58
1357 1630 3.458163 TCGCGGCGGAGGAATTCT 61.458 61.111 23.46 0.00 0.00 2.40
1540 1813 4.067512 AGGAGAGAGGCCAGGCGA 62.068 66.667 5.01 0.00 0.00 5.54
1576 1849 2.032634 GTTGAGCATCGTCCGGCAA 61.033 57.895 0.00 0.00 38.61 4.52
2368 2662 5.389778 TGAATGCTTACAATTGTACTTGCG 58.610 37.500 17.85 5.89 0.00 4.85
2423 2722 3.703420 GCAACTCCAATGATCTGAATGC 58.297 45.455 0.00 0.00 0.00 3.56
2424 2723 3.376234 ACGCAACTCCAATGATCTGAATG 59.624 43.478 0.00 0.00 0.00 2.67
2426 2725 3.002791 GACGCAACTCCAATGATCTGAA 58.997 45.455 0.00 0.00 0.00 3.02
2429 2728 1.204704 TCGACGCAACTCCAATGATCT 59.795 47.619 0.00 0.00 0.00 2.75
2430 2729 1.640428 TCGACGCAACTCCAATGATC 58.360 50.000 0.00 0.00 0.00 2.92
2522 2822 3.181506 GGCTTAATTCAAAGTCAGGCTCG 60.182 47.826 0.00 0.00 31.25 5.03
2529 2829 6.095377 CAGGTTGATGGCTTAATTCAAAGTC 58.905 40.000 0.00 0.00 31.66 3.01
2552 2856 6.661377 TGTAATGGTGGCTTTAATTTCTAGCA 59.339 34.615 0.00 0.00 36.64 3.49
2558 2862 6.098266 GGGAGATGTAATGGTGGCTTTAATTT 59.902 38.462 0.00 0.00 0.00 1.82
2564 2868 1.922447 TGGGAGATGTAATGGTGGCTT 59.078 47.619 0.00 0.00 0.00 4.35
2740 3052 1.069227 CCCTTGGCGTTCTTCTTTTCG 60.069 52.381 0.00 0.00 0.00 3.46
2863 3175 4.821589 GCCCTTCGAGCCAGGACG 62.822 72.222 3.07 0.00 32.41 4.79
2920 3232 4.576463 GTGAACTCAAGACCACACATTTCT 59.424 41.667 0.00 0.00 0.00 2.52
3028 3348 2.612746 TCCCTGCAGGTTACCCCC 60.613 66.667 30.63 0.00 36.75 5.40
3044 3364 4.522297 GTTCAATATCTGTGAACCGCTC 57.478 45.455 7.31 0.00 45.99 5.03
3061 3381 6.442112 TCAACGCATATCACAAAAATGTTCA 58.558 32.000 0.00 0.00 0.00 3.18
3065 3385 6.687653 TGTTCAACGCATATCACAAAAATG 57.312 33.333 0.00 0.00 0.00 2.32
3066 3386 7.887996 ATTGTTCAACGCATATCACAAAAAT 57.112 28.000 0.00 0.00 0.00 1.82
3067 3387 8.978564 ATATTGTTCAACGCATATCACAAAAA 57.021 26.923 0.00 0.00 0.00 1.94
3068 3388 8.978564 AATATTGTTCAACGCATATCACAAAA 57.021 26.923 0.00 0.00 0.00 2.44
3069 3389 8.978564 AAATATTGTTCAACGCATATCACAAA 57.021 26.923 0.00 0.00 0.00 2.83
3070 3390 8.978564 AAAATATTGTTCAACGCATATCACAA 57.021 26.923 0.00 0.00 0.00 3.33
3077 3397 9.847706 TGTGTATTAAAATATTGTTCAACGCAT 57.152 25.926 0.00 0.00 0.00 4.73
3078 3398 9.847706 ATGTGTATTAAAATATTGTTCAACGCA 57.152 25.926 8.35 8.35 0.00 5.24
3123 3443 9.434420 TTTCAGAATTCAAAAATTGTTCAGTGT 57.566 25.926 8.44 0.00 35.21 3.55
3164 3484 9.658799 TGTTCATGGTTCTCAAATTTTGTTAAA 57.341 25.926 8.89 0.52 0.00 1.52
3165 3485 9.658799 TTGTTCATGGTTCTCAAATTTTGTTAA 57.341 25.926 8.89 2.68 0.00 2.01
3166 3486 9.829507 ATTGTTCATGGTTCTCAAATTTTGTTA 57.170 25.926 8.89 0.00 0.00 2.41
3167 3487 8.735692 ATTGTTCATGGTTCTCAAATTTTGTT 57.264 26.923 8.89 0.00 0.00 2.83
3168 3488 8.206189 AGATTGTTCATGGTTCTCAAATTTTGT 58.794 29.630 8.89 0.00 0.00 2.83
3169 3489 8.597662 AGATTGTTCATGGTTCTCAAATTTTG 57.402 30.769 2.59 2.59 0.00 2.44
3170 3490 9.617523 AAAGATTGTTCATGGTTCTCAAATTTT 57.382 25.926 0.00 0.00 0.00 1.82
3171 3491 9.048446 CAAAGATTGTTCATGGTTCTCAAATTT 57.952 29.630 0.00 0.00 0.00 1.82
3172 3492 8.423349 TCAAAGATTGTTCATGGTTCTCAAATT 58.577 29.630 0.00 0.00 0.00 1.82
3173 3493 7.954835 TCAAAGATTGTTCATGGTTCTCAAAT 58.045 30.769 0.00 0.00 0.00 2.32
3174 3494 7.345422 TCAAAGATTGTTCATGGTTCTCAAA 57.655 32.000 0.00 0.00 0.00 2.69
3175 3495 6.957920 TCAAAGATTGTTCATGGTTCTCAA 57.042 33.333 0.00 0.00 0.00 3.02
3176 3496 6.957920 TTCAAAGATTGTTCATGGTTCTCA 57.042 33.333 0.00 0.00 0.00 3.27
3177 3497 8.822652 AATTTCAAAGATTGTTCATGGTTCTC 57.177 30.769 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.