Multiple sequence alignment - TraesCS2D01G022200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G022200 chr2D 100.000 4127 0 0 1 4127 10166323 10162197 0.000000e+00 7622.0
1 TraesCS2D01G022200 chr2D 95.000 100 5 0 4023 4122 102077423 102077522 1.540000e-34 158.0
2 TraesCS2D01G022200 chr2D 91.803 61 5 0 2565 2625 19581840 19581900 7.350000e-13 86.1
3 TraesCS2D01G022200 chr2D 88.525 61 7 0 2558 2618 14020469 14020409 1.590000e-09 75.0
4 TraesCS2D01G022200 chr2A 96.749 2553 77 1 1 2553 9682433 9684979 0.000000e+00 4250.0
5 TraesCS2D01G022200 chr2A 96.749 2553 77 1 1 2553 10412493 10409947 0.000000e+00 4250.0
6 TraesCS2D01G022200 chr2A 94.876 1288 37 9 1 1267 9369670 9370949 0.000000e+00 1986.0
7 TraesCS2D01G022200 chr2A 89.869 1451 96 12 2598 4017 10409949 10408519 0.000000e+00 1818.0
8 TraesCS2D01G022200 chr2A 96.631 1039 33 2 1269 2306 9386214 9387251 0.000000e+00 1724.0
9 TraesCS2D01G022200 chr2A 93.029 746 37 3 2598 3340 9684977 9685710 0.000000e+00 1075.0
10 TraesCS2D01G022200 chr2A 89.924 526 42 7 2990 3508 9686555 9687076 0.000000e+00 667.0
11 TraesCS2D01G022200 chr2A 74.545 220 44 6 2438 2654 16273997 16274207 7.350000e-13 86.1
12 TraesCS2D01G022200 chrUn 78.863 1618 285 36 1195 2784 12259568 12261156 0.000000e+00 1040.0
13 TraesCS2D01G022200 chrUn 83.505 97 16 0 2558 2654 2095021 2094925 1.580000e-14 91.6
14 TraesCS2D01G022200 chrUn 82.178 101 18 0 2558 2658 207764685 207764585 2.040000e-13 87.9
15 TraesCS2D01G022200 chrUn 80.189 106 21 0 2558 2663 2091162 2091057 3.420000e-11 80.5
16 TraesCS2D01G022200 chr4B 92.579 539 28 6 363 894 564080039 564079506 0.000000e+00 763.0
17 TraesCS2D01G022200 chr4B 92.030 527 37 4 284 810 564080557 564080036 0.000000e+00 736.0
18 TraesCS2D01G022200 chr4B 93.229 192 9 4 343 533 564078926 564079114 3.140000e-71 279.0
19 TraesCS2D01G022200 chr3A 87.299 622 46 16 284 894 63039431 63038832 0.000000e+00 680.0
20 TraesCS2D01G022200 chr3A 80.769 494 63 22 62 533 63037957 63038440 1.410000e-94 357.0
21 TraesCS2D01G022200 chr3A 91.064 235 18 3 62 294 63039695 63039462 8.610000e-82 315.0
22 TraesCS2D01G022200 chr3A 100.000 38 0 0 3585 3622 746104612 746104575 2.060000e-08 71.3
23 TraesCS2D01G022200 chr3D 89.331 553 37 10 343 894 287083217 287083748 0.000000e+00 675.0
24 TraesCS2D01G022200 chr3D 87.356 609 45 14 284 881 287082609 287083196 0.000000e+00 669.0
25 TraesCS2D01G022200 chr3D 92.105 228 17 1 62 288 287084661 287084434 1.850000e-83 320.0
26 TraesCS2D01G022200 chr3D 92.670 191 13 1 343 532 287084327 287084137 1.460000e-69 274.0
27 TraesCS2D01G022200 chr3D 100.000 39 0 0 3585 3623 51733567 51733529 5.720000e-09 73.1
28 TraesCS2D01G022200 chr5D 89.698 398 36 5 3627 4020 486189158 486188762 1.710000e-138 503.0
29 TraesCS2D01G022200 chr5D 89.196 398 38 5 3627 4020 339660990 339660594 3.710000e-135 492.0
30 TraesCS2D01G022200 chr5D 88.861 395 39 5 3627 4017 521178802 521179195 8.020000e-132 481.0
31 TraesCS2D01G022200 chr5D 88.608 395 40 5 3627 4017 38319132 38319525 3.730000e-130 475.0
32 TraesCS2D01G022200 chr5D 94.286 105 3 1 4023 4127 214888153 214888254 1.540000e-34 158.0
33 TraesCS2D01G022200 chr5D 100.000 37 0 0 3586 3622 339661056 339661020 7.400000e-08 69.4
34 TraesCS2D01G022200 chr5D 95.349 43 1 1 3580 3622 521178731 521178772 2.660000e-07 67.6
35 TraesCS2D01G022200 chr7D 88.693 398 40 5 3627 4020 453546967 453546571 8.020000e-132 481.0
36 TraesCS2D01G022200 chr7D 100.000 38 0 0 3585 3622 511114266 511114303 2.060000e-08 71.3
37 TraesCS2D01G022200 chr7D 97.436 39 0 1 3585 3622 453547035 453546997 9.580000e-07 65.8
38 TraesCS2D01G022200 chr6A 89.295 383 35 6 3639 4017 378192710 378193090 3.730000e-130 475.0
39 TraesCS2D01G022200 chr6D 87.595 395 44 5 3627 4017 17267841 17268234 1.750000e-123 453.0
40 TraesCS2D01G022200 chr6D 93.396 106 6 1 4023 4127 156097297 156097192 5.520000e-34 156.0
41 TraesCS2D01G022200 chr6D 100.000 38 0 0 3585 3622 347712153 347712190 2.060000e-08 71.3
42 TraesCS2D01G022200 chr6B 90.828 338 27 4 547 883 420655019 420654685 2.260000e-122 449.0
43 TraesCS2D01G022200 chr6B 87.387 222 26 2 62 283 165568003 165567784 1.900000e-63 254.0
44 TraesCS2D01G022200 chr6B 86.161 224 23 4 62 285 420655775 420655560 6.900000e-58 235.0
45 TraesCS2D01G022200 chr6B 93.269 104 7 0 4023 4126 665457237 665457134 1.990000e-33 154.0
46 TraesCS2D01G022200 chr2B 87.186 398 46 5 3627 4020 63049820 63049424 8.140000e-122 448.0
47 TraesCS2D01G022200 chr2B 84.103 390 54 7 3634 4020 742653891 742653507 1.810000e-98 370.0
48 TraesCS2D01G022200 chr2B 96.296 54 2 0 2558 2611 25486826 25486773 5.680000e-14 89.8
49 TraesCS2D01G022200 chr2B 92.063 63 5 0 2565 2627 31422490 31422428 5.680000e-14 89.8
50 TraesCS2D01G022200 chr2B 81.443 97 18 0 2558 2654 25475917 25475821 3.420000e-11 80.5
51 TraesCS2D01G022200 chr2B 87.037 54 6 1 2435 2487 137215256 137215203 4.460000e-05 60.2
52 TraesCS2D01G022200 chr7B 90.476 210 20 0 62 271 696273752 696273543 1.130000e-70 278.0
53 TraesCS2D01G022200 chr7B 90.732 205 19 0 64 268 696271894 696272098 1.460000e-69 274.0
54 TraesCS2D01G022200 chr7B 94.737 38 1 1 3356 3392 595682790 595682753 1.600000e-04 58.4
55 TraesCS2D01G022200 chr4A 93.636 110 2 1 4023 4127 218072153 218072262 4.270000e-35 159.0
56 TraesCS2D01G022200 chr4A 93.333 105 7 0 4023 4127 483592300 483592404 5.520000e-34 156.0
57 TraesCS2D01G022200 chr4A 93.333 105 7 0 4023 4127 530692316 530692420 5.520000e-34 156.0
58 TraesCS2D01G022200 chr4A 91.525 59 5 0 922 980 603331482 603331540 9.510000e-12 82.4
59 TraesCS2D01G022200 chr4A 100.000 38 0 0 3585 3622 644642841 644642878 2.060000e-08 71.3
60 TraesCS2D01G022200 chr5A 93.269 104 7 0 4024 4127 257385676 257385779 1.990000e-33 154.0
61 TraesCS2D01G022200 chr1D 92.523 107 5 2 4023 4127 216914877 216914982 2.570000e-32 150.0
62 TraesCS2D01G022200 chr1D 94.872 39 2 0 3360 3398 478973341 478973303 1.240000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G022200 chr2D 10162197 10166323 4126 True 7622.000000 7622 100.0000 1 4127 1 chr2D.!!$R1 4126
1 TraesCS2D01G022200 chr2A 10408519 10412493 3974 True 3034.000000 4250 93.3090 1 4017 2 chr2A.!!$R1 4016
2 TraesCS2D01G022200 chr2A 9682433 9687076 4643 False 1997.333333 4250 93.2340 1 3508 3 chr2A.!!$F4 3507
3 TraesCS2D01G022200 chr2A 9369670 9370949 1279 False 1986.000000 1986 94.8760 1 1267 1 chr2A.!!$F1 1266
4 TraesCS2D01G022200 chr2A 9386214 9387251 1037 False 1724.000000 1724 96.6310 1269 2306 1 chr2A.!!$F2 1037
5 TraesCS2D01G022200 chrUn 12259568 12261156 1588 False 1040.000000 1040 78.8630 1195 2784 1 chrUn.!!$F1 1589
6 TraesCS2D01G022200 chr4B 564079506 564080557 1051 True 749.500000 763 92.3045 284 894 2 chr4B.!!$R1 610
7 TraesCS2D01G022200 chr3A 63038832 63039695 863 True 497.500000 680 89.1815 62 894 2 chr3A.!!$R2 832
8 TraesCS2D01G022200 chr3D 287082609 287083748 1139 False 672.000000 675 88.3435 284 894 2 chr3D.!!$F1 610
9 TraesCS2D01G022200 chr3D 287084137 287084661 524 True 297.000000 320 92.3875 62 532 2 chr3D.!!$R2 470
10 TraesCS2D01G022200 chr6B 420654685 420655775 1090 True 342.000000 449 88.4945 62 883 2 chr6B.!!$R3 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 282 3.399181 CTTGGCGGTAGGGGCTGA 61.399 66.667 0.0 0.0 0.00 4.26 F
1209 2560 1.519455 CCACCTCTCATTCGACGGC 60.519 63.158 0.0 0.0 0.00 5.68 F
1675 3026 0.039764 ATCGTCAGAGGACAGGGACA 59.960 55.000 0.0 0.0 44.54 4.02 F
2520 3871 0.108585 ACGACAAGCACACTGGGATT 59.891 50.000 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 2632 0.101759 GCGAGTAGGCGGTGATGTTA 59.898 55.0 0.00 0.0 0.00 2.41 R
2553 3910 0.182775 AGTTGGACAACACCCTCACC 59.817 55.0 16.58 0.0 43.47 4.02 R
2790 4156 0.249699 GGCCGGGTTTTGGTTTCTTG 60.250 55.0 2.18 0.0 0.00 3.02 R
3726 6331 0.034896 TTGTCTGGGCGTCCTCTTTC 59.965 55.0 7.97 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 282 3.399181 CTTGGCGGTAGGGGCTGA 61.399 66.667 0.00 0.00 0.00 4.26
668 1573 6.459923 AGAAAGGATGAAATACGGCTCTATC 58.540 40.000 0.00 0.00 26.49 2.08
852 2203 7.058525 TCGTATTTGATCTTACTGGAGAGGTA 58.941 38.462 0.00 0.00 0.00 3.08
859 2210 8.380742 TGATCTTACTGGAGAGGTAATCTTTT 57.619 34.615 0.00 0.00 38.84 2.27
1004 2355 3.023949 GCAGGACGAGAGCCATGGT 62.024 63.158 14.67 0.00 0.00 3.55
1209 2560 1.519455 CCACCTCTCATTCGACGGC 60.519 63.158 0.00 0.00 0.00 5.68
1313 2664 2.159366 CCTACTCGCTCGAAGACAACAT 60.159 50.000 0.00 0.00 0.00 2.71
1314 2665 1.702886 ACTCGCTCGAAGACAACATG 58.297 50.000 0.00 0.00 0.00 3.21
1675 3026 0.039764 ATCGTCAGAGGACAGGGACA 59.960 55.000 0.00 0.00 44.54 4.02
1678 3029 1.070134 CGTCAGAGGACAGGGACAAAA 59.930 52.381 0.00 0.00 44.54 2.44
1724 3075 1.949525 GCACCTCACACATGAACAGTT 59.050 47.619 0.00 0.00 33.30 3.16
1821 3172 6.313905 CCTCATTTGGTTACTGTGTCTGTATC 59.686 42.308 0.00 0.00 0.00 2.24
1844 3195 3.314331 ACCAGCCGCTACTGCAGT 61.314 61.111 25.12 25.12 39.64 4.40
1929 3280 1.064003 ACATCTTACTGGGTGGTGCA 58.936 50.000 0.00 0.00 0.00 4.57
2315 3666 6.488715 AGAAGGAATTGAGGCTTTACATTCT 58.511 36.000 0.00 0.00 0.00 2.40
2328 3679 7.885399 AGGCTTTACATTCTTGAATTAGTCAGT 59.115 33.333 0.00 0.00 37.61 3.41
2329 3680 9.162764 GGCTTTACATTCTTGAATTAGTCAGTA 57.837 33.333 0.00 0.00 37.61 2.74
2337 3688 4.487714 TGAATTAGTCAGTAAGGGCCAG 57.512 45.455 6.18 0.00 0.00 4.85
2358 3709 1.180456 TGAGCACCCAAGGCATTGTG 61.180 55.000 10.60 0.35 34.39 3.33
2399 3750 4.882671 ATGCAATCCAGACGAAATGTAC 57.117 40.909 0.00 0.00 0.00 2.90
2403 3754 4.034048 GCAATCCAGACGAAATGTACGAAT 59.966 41.667 0.00 0.00 34.70 3.34
2430 3781 6.600032 TGTACAAAAAGCTGAAAGACAACCTA 59.400 34.615 0.00 0.00 34.07 3.08
2431 3782 5.891451 ACAAAAAGCTGAAAGACAACCTAC 58.109 37.500 0.00 0.00 34.07 3.18
2432 3783 5.652452 ACAAAAAGCTGAAAGACAACCTACT 59.348 36.000 0.00 0.00 34.07 2.57
2433 3784 6.826741 ACAAAAAGCTGAAAGACAACCTACTA 59.173 34.615 0.00 0.00 34.07 1.82
2434 3785 6.862711 AAAAGCTGAAAGACAACCTACTAC 57.137 37.500 0.00 0.00 34.07 2.73
2435 3786 5.810080 AAGCTGAAAGACAACCTACTACT 57.190 39.130 0.00 0.00 34.07 2.57
2520 3871 0.108585 ACGACAAGCACACTGGGATT 59.891 50.000 0.00 0.00 0.00 3.01
2553 3910 1.331756 GGCCAAGCAATGTATGAGTCG 59.668 52.381 0.00 0.00 0.00 4.18
2555 3912 2.632377 CCAAGCAATGTATGAGTCGGT 58.368 47.619 0.00 0.00 0.00 4.69
2557 3914 3.261580 CAAGCAATGTATGAGTCGGTGA 58.738 45.455 0.00 0.00 0.00 4.02
2558 3915 3.170791 AGCAATGTATGAGTCGGTGAG 57.829 47.619 0.00 0.00 0.00 3.51
2563 3929 1.183549 GTATGAGTCGGTGAGGGTGT 58.816 55.000 0.00 0.00 0.00 4.16
2568 3934 1.301479 GTCGGTGAGGGTGTTGTCC 60.301 63.158 0.00 0.00 0.00 4.02
2572 3938 0.182775 GGTGAGGGTGTTGTCCAACT 59.817 55.000 11.14 0.00 41.67 3.16
2575 3941 2.120312 TGAGGGTGTTGTCCAACTACA 58.880 47.619 11.14 0.00 41.67 2.74
2586 3952 4.832248 TGTCCAACTACATGATGTTCCTC 58.168 43.478 2.29 0.00 0.00 3.71
2598 3964 4.306245 TTCCTCCTGGTGGAACGT 57.694 55.556 22.85 0.00 42.66 3.99
2693 4059 1.454847 AAGAAGGCCAAACGCACCA 60.455 52.632 5.01 0.00 40.31 4.17
2803 4169 5.956642 TGGTACAAGACAAGAAACCAAAAC 58.043 37.500 0.00 0.00 34.20 2.43
2858 4224 1.549170 CGTAGTAGCCCAAGAACTGGT 59.451 52.381 0.00 0.00 44.76 4.00
2875 4241 1.267806 TGGTCAGTAACGACGAGAACC 59.732 52.381 0.00 0.97 36.73 3.62
2881 4247 2.670414 AGTAACGACGAGAACCTAGACG 59.330 50.000 0.00 0.00 32.24 4.18
2952 4318 4.980903 CACGCGGCAAACAGGTGC 62.981 66.667 12.47 0.00 44.14 5.01
3045 4411 1.202582 CACCTCCACCAACTAGTCGAG 59.797 57.143 0.00 0.00 0.00 4.04
3051 4417 2.431057 CCACCAACTAGTCGAGCCTAAT 59.569 50.000 0.00 0.00 0.00 1.73
3053 4419 2.694109 ACCAACTAGTCGAGCCTAATCC 59.306 50.000 0.00 0.00 0.00 3.01
3054 4420 2.693591 CCAACTAGTCGAGCCTAATCCA 59.306 50.000 0.00 0.00 0.00 3.41
3055 4421 3.491104 CCAACTAGTCGAGCCTAATCCAC 60.491 52.174 0.00 0.00 0.00 4.02
3056 4422 2.308690 ACTAGTCGAGCCTAATCCACC 58.691 52.381 0.00 0.00 0.00 4.61
3057 4423 1.267261 CTAGTCGAGCCTAATCCACCG 59.733 57.143 0.00 0.00 0.00 4.94
3058 4424 1.591863 GTCGAGCCTAATCCACCGC 60.592 63.158 0.00 0.00 0.00 5.68
3059 4425 2.280186 CGAGCCTAATCCACCGCC 60.280 66.667 0.00 0.00 0.00 6.13
3060 4426 2.908015 GAGCCTAATCCACCGCCA 59.092 61.111 0.00 0.00 0.00 5.69
3061 4427 1.523938 GAGCCTAATCCACCGCCAC 60.524 63.158 0.00 0.00 0.00 5.01
3062 4428 2.516225 GCCTAATCCACCGCCACC 60.516 66.667 0.00 0.00 0.00 4.61
3063 4429 2.203015 CCTAATCCACCGCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
3064 4430 2.582436 CTAATCCACCGCCACCGT 59.418 61.111 0.00 0.00 0.00 4.83
3086 4452 1.153429 CGGAGGACGGGGATGAAAC 60.153 63.158 0.00 0.00 39.42 2.78
3120 4486 1.423845 CGCAGCCGTGGACAAATAC 59.576 57.895 0.00 0.00 0.00 1.89
3186 4552 5.126067 TCTTAATCAAATAGCTCACAGGCC 58.874 41.667 0.00 0.00 0.00 5.19
3220 4586 6.602406 TGTACTGTATAAGAGTGAGGAAGTCC 59.398 42.308 0.00 0.00 0.00 3.85
3251 4617 1.665916 CCCCTGATGCGTGCTATCG 60.666 63.158 0.00 0.00 0.00 2.92
3278 4644 6.351286 GCCATTCATTTTAACTGTTGGGATCT 60.351 38.462 2.69 0.00 0.00 2.75
3281 4647 8.739039 CATTCATTTTAACTGTTGGGATCTGTA 58.261 33.333 2.69 0.00 0.00 2.74
3292 4658 7.037873 ACTGTTGGGATCTGTACCTTTGTATTA 60.038 37.037 0.00 0.00 0.00 0.98
3346 5916 1.005450 GGGGTTCCTGCATTCCAGTAA 59.995 52.381 0.00 0.00 40.06 2.24
3347 5917 2.556559 GGGGTTCCTGCATTCCAGTAAA 60.557 50.000 0.00 0.00 40.06 2.01
3417 5987 9.582648 AAACCTAACATTGTCCAGTTAATTAGT 57.417 29.630 0.00 0.00 30.57 2.24
3426 5997 8.851541 TTGTCCAGTTAATTAGTAAAACCGAT 57.148 30.769 0.00 0.00 0.00 4.18
3438 6009 0.958822 AAACCGATTGAGCACCCAAC 59.041 50.000 0.00 0.00 0.00 3.77
3450 6021 2.037772 AGCACCCAACAACAAACACAAA 59.962 40.909 0.00 0.00 0.00 2.83
3451 6022 2.808543 GCACCCAACAACAAACACAAAA 59.191 40.909 0.00 0.00 0.00 2.44
3452 6023 3.251004 GCACCCAACAACAAACACAAAAA 59.749 39.130 0.00 0.00 0.00 1.94
3482 6057 3.008485 AGAAAAGGACACTAGAGCTTGGG 59.992 47.826 0.00 0.00 0.00 4.12
3485 6060 0.617820 GGACACTAGAGCTTGGGGGA 60.618 60.000 0.00 0.00 0.00 4.81
3493 6068 1.386057 AGCTTGGGGGATAGGGACC 60.386 63.158 0.00 0.00 0.00 4.46
3504 6079 0.691078 ATAGGGACCAGGACACGCAT 60.691 55.000 0.00 0.00 0.00 4.73
3508 6083 1.965930 GACCAGGACACGCATGCAA 60.966 57.895 19.57 0.00 0.00 4.08
3509 6084 1.303561 ACCAGGACACGCATGCAAT 60.304 52.632 19.57 1.32 0.00 3.56
3523 6098 4.553351 CGCATGCAATATCTCAATGAACGT 60.553 41.667 19.57 0.00 0.00 3.99
3545 6120 1.709578 TCTGAGCCAGACACAAGAGT 58.290 50.000 1.25 0.00 35.39 3.24
3560 6135 0.106015 AGAGTGCCAAAGCCCAAAGT 60.106 50.000 0.00 0.00 38.69 2.66
3566 6141 3.055891 GTGCCAAAGCCCAAAGTGATTAT 60.056 43.478 0.00 0.00 38.69 1.28
3567 6142 3.582208 TGCCAAAGCCCAAAGTGATTATT 59.418 39.130 0.00 0.00 38.69 1.40
3588 6163 0.713579 TTTTTAGGATGGGGTGGGGG 59.286 55.000 0.00 0.00 0.00 5.40
3620 6199 5.833131 GCTCCCCACCTGAATATATTTCAAA 59.167 40.000 0.00 0.00 0.00 2.69
3626 6205 7.202029 CCCACCTGAATATATTTCAAAATGGCT 60.202 37.037 0.00 0.00 0.00 4.75
3654 6259 3.120304 GGAAAACGGATCGAAAACCTGAG 60.120 47.826 0.00 0.00 0.00 3.35
3684 6289 3.073356 ACCCTGTTTATGAGGAAAACCGA 59.927 43.478 0.00 0.00 36.26 4.69
3687 6292 4.392138 CCTGTTTATGAGGAAAACCGAGTC 59.608 45.833 0.00 0.00 36.26 3.36
3698 6303 4.930405 GGAAAACCGAGTCAAAAACCAAAA 59.070 37.500 0.00 0.00 0.00 2.44
3722 6327 5.491323 AGAGAGGGTAAAACAAGAAGAGG 57.509 43.478 0.00 0.00 0.00 3.69
3726 6331 6.299922 AGAGGGTAAAACAAGAAGAGGAAAG 58.700 40.000 0.00 0.00 0.00 2.62
3780 6385 3.693807 AGCAGACCAATGACATCACAAT 58.306 40.909 0.00 0.00 0.00 2.71
3785 6390 4.940046 AGACCAATGACATCACAATGAGAC 59.060 41.667 0.00 0.00 36.67 3.36
3788 6393 1.349234 TGACATCACAATGAGACGCG 58.651 50.000 3.53 3.53 36.67 6.01
3808 6413 2.111384 GCAAGTAGATGAGGGGAGTCA 58.889 52.381 0.00 0.00 0.00 3.41
3816 6421 0.417437 TGAGGGGAGTCATCAAGGGA 59.583 55.000 0.00 0.00 32.79 4.20
3827 6432 4.474651 AGTCATCAAGGGATCACAATACCA 59.525 41.667 0.00 0.00 38.53 3.25
3877 6482 1.800681 GGCATGCTTACCGAACACC 59.199 57.895 18.92 0.00 0.00 4.16
3922 6527 1.603802 CAACCAACGAGTGACAAGCAT 59.396 47.619 0.00 0.00 0.00 3.79
3933 6538 4.147321 AGTGACAAGCATGAACCTTGAAT 58.853 39.130 15.74 0.00 41.64 2.57
3936 6541 2.564062 ACAAGCATGAACCTTGAATGGG 59.436 45.455 15.74 0.00 41.64 4.00
3994 6599 0.106708 GGGAGGCATCTTGCGACATA 59.893 55.000 0.00 0.00 46.21 2.29
4011 6616 5.453587 GCGACATAATTGAGCAAAGATGAAC 59.546 40.000 12.09 6.93 32.91 3.18
4017 6622 4.836125 TTGAGCAAAGATGAACCAAGAC 57.164 40.909 0.00 0.00 0.00 3.01
4018 6623 3.819368 TGAGCAAAGATGAACCAAGACA 58.181 40.909 0.00 0.00 0.00 3.41
4019 6624 4.206375 TGAGCAAAGATGAACCAAGACAA 58.794 39.130 0.00 0.00 0.00 3.18
4020 6625 4.828939 TGAGCAAAGATGAACCAAGACAAT 59.171 37.500 0.00 0.00 0.00 2.71
4021 6626 5.048504 TGAGCAAAGATGAACCAAGACAATC 60.049 40.000 0.00 0.00 0.00 2.67
4022 6627 4.828939 AGCAAAGATGAACCAAGACAATCA 59.171 37.500 0.00 0.00 0.00 2.57
4023 6628 5.479375 AGCAAAGATGAACCAAGACAATCAT 59.521 36.000 0.00 0.00 35.33 2.45
4024 6629 6.660521 AGCAAAGATGAACCAAGACAATCATA 59.339 34.615 0.00 0.00 32.90 2.15
4025 6630 6.749118 GCAAAGATGAACCAAGACAATCATAC 59.251 38.462 0.00 0.00 32.90 2.39
4026 6631 7.253422 CAAAGATGAACCAAGACAATCATACC 58.747 38.462 0.00 0.00 32.90 2.73
4027 6632 6.319048 AGATGAACCAAGACAATCATACCT 57.681 37.500 0.00 0.00 32.90 3.08
4028 6633 6.352516 AGATGAACCAAGACAATCATACCTC 58.647 40.000 0.00 0.00 32.90 3.85
4029 6634 4.843728 TGAACCAAGACAATCATACCTCC 58.156 43.478 0.00 0.00 0.00 4.30
4030 6635 4.288366 TGAACCAAGACAATCATACCTCCA 59.712 41.667 0.00 0.00 0.00 3.86
4031 6636 5.044919 TGAACCAAGACAATCATACCTCCAT 60.045 40.000 0.00 0.00 0.00 3.41
4032 6637 5.456921 ACCAAGACAATCATACCTCCATT 57.543 39.130 0.00 0.00 0.00 3.16
4033 6638 5.831103 ACCAAGACAATCATACCTCCATTT 58.169 37.500 0.00 0.00 0.00 2.32
4034 6639 6.256053 ACCAAGACAATCATACCTCCATTTT 58.744 36.000 0.00 0.00 0.00 1.82
4035 6640 6.153340 ACCAAGACAATCATACCTCCATTTTG 59.847 38.462 0.00 0.00 0.00 2.44
4036 6641 5.841957 AGACAATCATACCTCCATTTTGC 57.158 39.130 0.00 0.00 0.00 3.68
4037 6642 5.263599 AGACAATCATACCTCCATTTTGCA 58.736 37.500 0.00 0.00 0.00 4.08
4038 6643 5.895534 AGACAATCATACCTCCATTTTGCAT 59.104 36.000 0.00 0.00 0.00 3.96
4039 6644 6.040166 AGACAATCATACCTCCATTTTGCATC 59.960 38.462 0.00 0.00 0.00 3.91
4040 6645 5.657745 ACAATCATACCTCCATTTTGCATCA 59.342 36.000 0.00 0.00 0.00 3.07
4041 6646 6.325545 ACAATCATACCTCCATTTTGCATCAT 59.674 34.615 0.00 0.00 0.00 2.45
4042 6647 5.777850 TCATACCTCCATTTTGCATCATG 57.222 39.130 0.00 0.00 0.00 3.07
4043 6648 2.973694 ACCTCCATTTTGCATCATGC 57.026 45.000 1.35 1.35 45.29 4.06
4044 6649 2.463752 ACCTCCATTTTGCATCATGCT 58.536 42.857 11.84 0.00 45.31 3.79
4045 6650 2.835764 ACCTCCATTTTGCATCATGCTT 59.164 40.909 11.84 0.00 45.31 3.91
4046 6651 3.262405 ACCTCCATTTTGCATCATGCTTT 59.738 39.130 11.84 0.00 45.31 3.51
4047 6652 4.258543 CCTCCATTTTGCATCATGCTTTT 58.741 39.130 11.84 0.00 45.31 2.27
4048 6653 5.046448 ACCTCCATTTTGCATCATGCTTTTA 60.046 36.000 11.84 0.00 45.31 1.52
4049 6654 6.053005 CCTCCATTTTGCATCATGCTTTTAT 58.947 36.000 11.84 0.00 45.31 1.40
4050 6655 7.147689 ACCTCCATTTTGCATCATGCTTTTATA 60.148 33.333 11.84 0.00 45.31 0.98
4051 6656 7.876068 CCTCCATTTTGCATCATGCTTTTATAT 59.124 33.333 11.84 0.00 45.31 0.86
4052 6657 9.268268 CTCCATTTTGCATCATGCTTTTATATT 57.732 29.630 11.84 0.00 45.31 1.28
4053 6658 9.047371 TCCATTTTGCATCATGCTTTTATATTG 57.953 29.630 11.84 0.00 45.31 1.90
4054 6659 9.047371 CCATTTTGCATCATGCTTTTATATTGA 57.953 29.630 11.84 0.00 45.31 2.57
4076 6681 7.779754 TGATATTTATTGCATTATGGGCTGT 57.220 32.000 0.00 0.00 0.00 4.40
4077 6682 8.192743 TGATATTTATTGCATTATGGGCTGTT 57.807 30.769 0.00 0.00 0.00 3.16
4078 6683 9.306777 TGATATTTATTGCATTATGGGCTGTTA 57.693 29.630 0.00 0.00 0.00 2.41
4082 6687 9.927668 ATTTATTGCATTATGGGCTGTTATTAC 57.072 29.630 0.00 0.00 0.00 1.89
4083 6688 6.975196 ATTGCATTATGGGCTGTTATTACA 57.025 33.333 0.00 0.00 0.00 2.41
4084 6689 5.766150 TGCATTATGGGCTGTTATTACAC 57.234 39.130 0.00 0.00 0.00 2.90
4085 6690 5.196695 TGCATTATGGGCTGTTATTACACA 58.803 37.500 0.00 0.00 0.00 3.72
4086 6691 5.832595 TGCATTATGGGCTGTTATTACACAT 59.167 36.000 0.00 0.00 0.00 3.21
4087 6692 6.323482 TGCATTATGGGCTGTTATTACACATT 59.677 34.615 0.00 0.00 0.00 2.71
4088 6693 7.503902 TGCATTATGGGCTGTTATTACACATTA 59.496 33.333 0.00 0.00 0.00 1.90
4089 6694 7.807907 GCATTATGGGCTGTTATTACACATTAC 59.192 37.037 0.00 0.00 0.00 1.89
4090 6695 9.066892 CATTATGGGCTGTTATTACACATTACT 57.933 33.333 0.00 0.00 0.00 2.24
4091 6696 9.640952 ATTATGGGCTGTTATTACACATTACTT 57.359 29.630 0.00 0.00 0.00 2.24
4094 6699 8.445275 TGGGCTGTTATTACACATTACTTATG 57.555 34.615 0.00 0.00 40.26 1.90
4095 6700 7.012894 TGGGCTGTTATTACACATTACTTATGC 59.987 37.037 0.00 0.00 37.81 3.14
4096 6701 7.228706 GGGCTGTTATTACACATTACTTATGCT 59.771 37.037 0.00 0.00 37.81 3.79
4097 6702 8.621286 GGCTGTTATTACACATTACTTATGCTT 58.379 33.333 0.00 0.00 37.81 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 282 5.063438 CACGCGCTAGCCAATATATACATTT 59.937 40.000 5.73 0.00 41.18 2.32
689 1594 8.986991 TGGGTAAGCAAATTATTTGTGGATATT 58.013 29.630 17.51 7.30 42.56 1.28
999 2350 2.039084 GTCTATAGGCCCTCCAACCATG 59.961 54.545 0.00 0.00 33.74 3.66
1004 2355 3.309296 CAGAAGTCTATAGGCCCTCCAA 58.691 50.000 0.00 0.00 33.74 3.53
1251 2602 1.891150 CCAAGGTGCAGCAAGAGAAAT 59.109 47.619 19.63 0.00 0.00 2.17
1281 2632 0.101759 GCGAGTAGGCGGTGATGTTA 59.898 55.000 0.00 0.00 0.00 2.41
1313 2664 2.034048 TAGGTGTCGCAGCCACAACA 62.034 55.000 11.09 0.00 31.60 3.33
1314 2665 1.301401 TAGGTGTCGCAGCCACAAC 60.301 57.895 0.00 0.00 31.60 3.32
1675 3026 7.394016 AGAACTTTGATTTCAGGGTTGTTTTT 58.606 30.769 5.42 0.00 0.00 1.94
1678 3029 6.154363 TCAAGAACTTTGATTTCAGGGTTGTT 59.846 34.615 5.42 5.28 31.55 2.83
1724 3075 2.909662 TCCAACTCCATCACCACATACA 59.090 45.455 0.00 0.00 0.00 2.29
1794 3145 5.071250 ACAGACACAGTAACCAAATGAGGTA 59.929 40.000 0.00 0.00 42.25 3.08
1844 3195 1.070134 ACTGGAAGAACAACAGCGCTA 59.930 47.619 10.99 0.00 37.43 4.26
1893 3244 4.876125 AGATGTAGGTGATAGCAACATCG 58.124 43.478 15.11 0.00 46.97 3.84
1929 3280 6.022315 CAGGGATCTTATCTCCAGGAGTAAT 58.978 44.000 16.65 6.14 34.24 1.89
2013 3364 4.430137 GCAGAGAAATGCATGTTTCAGA 57.570 40.909 13.74 0.00 45.77 3.27
2293 3644 6.721208 TCAAGAATGTAAAGCCTCAATTCCTT 59.279 34.615 0.00 0.00 0.00 3.36
2315 3666 4.324254 CCTGGCCCTTACTGACTAATTCAA 60.324 45.833 0.00 0.00 32.21 2.69
2328 3679 3.077907 GTGCTCACCTGGCCCTTA 58.922 61.111 0.00 0.00 0.00 2.69
2399 3750 6.575201 GTCTTTCAGCTTTTTGTACAGATTCG 59.425 38.462 0.00 0.00 0.00 3.34
2403 3754 6.404293 GGTTGTCTTTCAGCTTTTTGTACAGA 60.404 38.462 0.00 0.00 0.00 3.41
2430 3781 3.693578 GGAACTCAACGCCTAGTAGTAGT 59.306 47.826 3.91 0.00 0.00 2.73
2431 3782 3.693085 TGGAACTCAACGCCTAGTAGTAG 59.307 47.826 0.00 0.00 0.00 2.57
2432 3783 3.689347 TGGAACTCAACGCCTAGTAGTA 58.311 45.455 0.00 0.00 0.00 1.82
2433 3784 2.522185 TGGAACTCAACGCCTAGTAGT 58.478 47.619 0.00 0.00 0.00 2.73
2434 3785 3.192844 TCTTGGAACTCAACGCCTAGTAG 59.807 47.826 0.00 0.00 0.00 2.57
2435 3786 3.159472 TCTTGGAACTCAACGCCTAGTA 58.841 45.455 0.00 0.00 0.00 1.82
2520 3871 1.631405 CTTGGCCTTCCATGGTTTCA 58.369 50.000 12.58 1.98 43.05 2.69
2553 3910 0.182775 AGTTGGACAACACCCTCACC 59.817 55.000 16.58 0.00 43.47 4.02
2555 3912 2.120312 TGTAGTTGGACAACACCCTCA 58.880 47.619 16.58 6.01 43.47 3.86
2557 3914 2.708861 TCATGTAGTTGGACAACACCCT 59.291 45.455 16.58 0.00 43.47 4.34
2558 3915 3.134574 TCATGTAGTTGGACAACACCC 57.865 47.619 16.58 5.20 43.47 4.61
2563 3929 5.241403 AGGAACATCATGTAGTTGGACAA 57.759 39.130 9.62 0.00 31.83 3.18
2568 3934 4.194640 CCAGGAGGAACATCATGTAGTTG 58.805 47.826 9.62 0.00 36.89 3.16
2572 3938 2.505407 CCACCAGGAGGAACATCATGTA 59.495 50.000 0.00 0.00 38.69 2.29
2575 3941 1.971149 TCCACCAGGAGGAACATCAT 58.029 50.000 2.46 0.00 39.61 2.45
2586 3952 1.189524 TGTAGGGACGTTCCACCAGG 61.190 60.000 17.22 0.00 38.64 4.45
2790 4156 0.249699 GGCCGGGTTTTGGTTTCTTG 60.250 55.000 2.18 0.00 0.00 3.02
2848 4214 2.724690 CGTCGTTACTGACCAGTTCTTG 59.275 50.000 8.06 0.00 42.54 3.02
2858 4224 3.681897 GTCTAGGTTCTCGTCGTTACTGA 59.318 47.826 0.00 0.00 0.00 3.41
2888 4254 3.058160 GCACCCGCAATGAGCTGT 61.058 61.111 0.00 0.00 42.61 4.40
2891 4257 3.512516 GGAGCACCCGCAATGAGC 61.513 66.667 0.00 0.00 42.27 4.26
2900 4266 1.374758 CACACGAAGAGGAGCACCC 60.375 63.158 0.00 0.00 36.73 4.61
2952 4318 4.767255 GCGTGGGACTCCCTGCTG 62.767 72.222 15.64 3.74 45.70 4.41
2967 4333 0.445436 CACTGCTAAGCTTCTTGGCG 59.555 55.000 0.00 7.49 37.29 5.69
3045 4411 2.516225 GGTGGCGGTGGATTAGGC 60.516 66.667 0.00 0.00 0.00 3.93
3064 4430 4.458829 ATCCCCGTCCTCCGCTGA 62.459 66.667 0.00 0.00 34.38 4.26
3077 4443 1.763968 GGTGCCCTTAGTTTCATCCC 58.236 55.000 0.00 0.00 0.00 3.85
3078 4444 1.065709 TCGGTGCCCTTAGTTTCATCC 60.066 52.381 0.00 0.00 0.00 3.51
3106 4472 3.998341 TCTTACAAGTATTTGTCCACGGC 59.002 43.478 6.91 0.00 44.00 5.68
3120 4486 6.094048 CCAGGGACACATTACATTCTTACAAG 59.906 42.308 0.00 0.00 0.00 3.16
3206 4572 0.972883 GTGCAGGACTTCCTCACTCT 59.027 55.000 15.26 0.00 46.65 3.24
3211 4577 1.374758 CCGTGTGCAGGACTTCCTC 60.375 63.158 0.00 0.00 46.65 3.71
3216 4582 4.664677 GTCGCCGTGTGCAGGACT 62.665 66.667 0.00 0.00 41.33 3.85
3251 4617 3.367630 CCAACAGTTAAAATGAATGGCGC 59.632 43.478 0.00 0.00 0.00 6.53
3404 5974 9.158233 CTCAATCGGTTTTACTAATTAACTGGA 57.842 33.333 0.00 0.00 0.00 3.86
3407 5977 8.448615 GTGCTCAATCGGTTTTACTAATTAACT 58.551 33.333 0.00 0.00 0.00 2.24
3417 5987 2.554893 GTTGGGTGCTCAATCGGTTTTA 59.445 45.455 0.00 0.00 0.00 1.52
3426 5997 1.895798 TGTTTGTTGTTGGGTGCTCAA 59.104 42.857 0.00 0.00 0.00 3.02
3451 6022 8.191446 GCTCTAGTGTCCTTTTCTTTTTCTTTT 58.809 33.333 0.00 0.00 0.00 2.27
3452 6023 7.558081 AGCTCTAGTGTCCTTTTCTTTTTCTTT 59.442 33.333 0.00 0.00 0.00 2.52
3453 6024 7.057264 AGCTCTAGTGTCCTTTTCTTTTTCTT 58.943 34.615 0.00 0.00 0.00 2.52
3454 6025 6.596621 AGCTCTAGTGTCCTTTTCTTTTTCT 58.403 36.000 0.00 0.00 0.00 2.52
3455 6026 6.869315 AGCTCTAGTGTCCTTTTCTTTTTC 57.131 37.500 0.00 0.00 0.00 2.29
3482 6057 1.400530 CGTGTCCTGGTCCCTATCCC 61.401 65.000 0.00 0.00 0.00 3.85
3485 6060 0.691078 ATGCGTGTCCTGGTCCCTAT 60.691 55.000 0.00 0.00 0.00 2.57
3493 6068 2.216046 AGATATTGCATGCGTGTCCTG 58.784 47.619 14.09 0.00 0.00 3.86
3504 6079 5.643348 AGACAACGTTCATTGAGATATTGCA 59.357 36.000 0.00 0.00 33.57 4.08
3508 6083 5.521735 GCTCAGACAACGTTCATTGAGATAT 59.478 40.000 25.12 0.00 35.28 1.63
3509 6084 4.864806 GCTCAGACAACGTTCATTGAGATA 59.135 41.667 25.12 1.18 35.28 1.98
3545 6120 1.422531 AATCACTTTGGGCTTTGGCA 58.577 45.000 0.00 0.00 40.87 4.92
3620 6199 4.513406 TCCGTTTTCCCTTATAGCCATT 57.487 40.909 0.00 0.00 0.00 3.16
3626 6205 5.585844 GGTTTTCGATCCGTTTTCCCTTATA 59.414 40.000 0.00 0.00 0.00 0.98
3631 6210 2.095415 CAGGTTTTCGATCCGTTTTCCC 60.095 50.000 0.00 0.00 0.00 3.97
3633 6212 3.667166 GCTCAGGTTTTCGATCCGTTTTC 60.667 47.826 0.00 0.00 0.00 2.29
3634 6213 2.225727 GCTCAGGTTTTCGATCCGTTTT 59.774 45.455 0.00 0.00 0.00 2.43
3654 6259 3.191371 CCTCATAAACAGGGTCAACTTGC 59.809 47.826 0.00 0.00 0.00 4.01
3698 6303 6.101296 TCCTCTTCTTGTTTTACCCTCTCTTT 59.899 38.462 0.00 0.00 0.00 2.52
3722 6327 1.002087 TCTGGGCGTCCTCTTTCTTTC 59.998 52.381 7.97 0.00 0.00 2.62
3726 6331 0.034896 TTGTCTGGGCGTCCTCTTTC 59.965 55.000 7.97 0.00 0.00 2.62
3751 6356 1.414181 TCATTGGTCTGCTAGCTAGGC 59.586 52.381 22.10 14.31 0.00 3.93
3780 6385 0.808755 TCATCTACTTGCGCGTCTCA 59.191 50.000 8.43 0.00 0.00 3.27
3785 6390 1.592669 CCCCTCATCTACTTGCGCG 60.593 63.158 0.00 0.00 0.00 6.86
3788 6393 2.111384 TGACTCCCCTCATCTACTTGC 58.889 52.381 0.00 0.00 0.00 4.01
3808 6413 4.949856 GTGTTGGTATTGTGATCCCTTGAT 59.050 41.667 0.00 0.00 0.00 2.57
3827 6432 2.656947 TAGGCTGCTTTCCAAGTGTT 57.343 45.000 0.00 0.00 0.00 3.32
3836 6441 1.815421 CGGTGCGATAGGCTGCTTT 60.815 57.895 0.00 0.00 44.05 3.51
3866 6471 1.376166 CGCCATGGGTGTTCGGTAA 60.376 57.895 15.13 0.00 0.00 2.85
3877 6482 2.046023 TCCTCTGTTGCGCCATGG 60.046 61.111 7.63 7.63 0.00 3.66
3922 6527 1.004745 GGAGCTCCCATTCAAGGTTCA 59.995 52.381 23.19 0.00 34.14 3.18
3994 6599 5.302568 TGTCTTGGTTCATCTTTGCTCAATT 59.697 36.000 0.00 0.00 0.00 2.32
4011 6616 6.567050 CAAAATGGAGGTATGATTGTCTTGG 58.433 40.000 0.00 0.00 0.00 3.61
4017 6622 6.151663 TGATGCAAAATGGAGGTATGATTG 57.848 37.500 0.00 0.00 0.00 2.67
4018 6623 6.740401 GCATGATGCAAAATGGAGGTATGATT 60.740 38.462 13.36 0.00 44.26 2.57
4019 6624 5.279306 GCATGATGCAAAATGGAGGTATGAT 60.279 40.000 13.36 0.00 44.26 2.45
4020 6625 4.038282 GCATGATGCAAAATGGAGGTATGA 59.962 41.667 13.36 0.00 44.26 2.15
4021 6626 4.304110 GCATGATGCAAAATGGAGGTATG 58.696 43.478 13.36 0.00 44.26 2.39
4022 6627 4.595762 GCATGATGCAAAATGGAGGTAT 57.404 40.909 13.36 0.00 44.26 2.73
4024 6629 2.973694 GCATGATGCAAAATGGAGGT 57.026 45.000 13.36 0.00 44.26 3.85
4050 6655 8.818860 ACAGCCCATAATGCAATAAATATCAAT 58.181 29.630 0.00 0.00 0.00 2.57
4051 6656 8.192743 ACAGCCCATAATGCAATAAATATCAA 57.807 30.769 0.00 0.00 0.00 2.57
4052 6657 7.779754 ACAGCCCATAATGCAATAAATATCA 57.220 32.000 0.00 0.00 0.00 2.15
4056 6661 9.927668 GTAATAACAGCCCATAATGCAATAAAT 57.072 29.630 0.00 0.00 0.00 1.40
4057 6662 8.918116 TGTAATAACAGCCCATAATGCAATAAA 58.082 29.630 0.00 0.00 0.00 1.40
4058 6663 8.356657 GTGTAATAACAGCCCATAATGCAATAA 58.643 33.333 0.00 0.00 35.91 1.40
4059 6664 7.503902 TGTGTAATAACAGCCCATAATGCAATA 59.496 33.333 0.00 0.00 35.91 1.90
4060 6665 6.323482 TGTGTAATAACAGCCCATAATGCAAT 59.677 34.615 0.00 0.00 35.91 3.56
4061 6666 5.654209 TGTGTAATAACAGCCCATAATGCAA 59.346 36.000 0.00 0.00 35.91 4.08
4062 6667 5.196695 TGTGTAATAACAGCCCATAATGCA 58.803 37.500 0.00 0.00 35.91 3.96
4063 6668 5.766150 TGTGTAATAACAGCCCATAATGC 57.234 39.130 0.00 0.00 35.91 3.56
4064 6669 9.066892 AGTAATGTGTAATAACAGCCCATAATG 57.933 33.333 0.00 0.00 35.91 1.90
4065 6670 9.640952 AAGTAATGTGTAATAACAGCCCATAAT 57.359 29.630 0.00 0.00 35.91 1.28
4068 6673 9.066892 CATAAGTAATGTGTAATAACAGCCCAT 57.933 33.333 0.00 0.00 35.91 4.00
4069 6674 7.012894 GCATAAGTAATGTGTAATAACAGCCCA 59.987 37.037 0.00 0.00 37.93 5.36
4070 6675 7.228706 AGCATAAGTAATGTGTAATAACAGCCC 59.771 37.037 0.00 0.00 37.93 5.19
4071 6676 8.154649 AGCATAAGTAATGTGTAATAACAGCC 57.845 34.615 0.00 0.00 37.93 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.