Multiple sequence alignment - TraesCS2D01G021700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G021700 chr2D 100.000 2585 0 0 1 2585 9914163 9911579 0.000000e+00 4774.0
1 TraesCS2D01G021700 chr2D 91.781 365 28 2 933 1295 10139970 10140334 8.250000e-140 507.0
2 TraesCS2D01G021700 chr2D 94.286 35 2 0 256 290 423863953 423863987 1.000000e-03 54.7
3 TraesCS2D01G021700 chr7D 98.186 937 16 1 1649 2585 106321197 106320262 0.000000e+00 1635.0
4 TraesCS2D01G021700 chr7D 97.866 937 19 1 1649 2585 446929077 446930012 0.000000e+00 1618.0
5 TraesCS2D01G021700 chr7D 97.439 937 23 1 1649 2585 563219013 563218078 0.000000e+00 1596.0
6 TraesCS2D01G021700 chr7D 97.436 936 23 1 1650 2585 126046960 126046026 0.000000e+00 1594.0
7 TraesCS2D01G021700 chr7D 95.652 92 3 1 744 835 341623073 341623163 2.070000e-31 147.0
8 TraesCS2D01G021700 chr5D 97.759 937 20 1 1649 2585 421152818 421151883 0.000000e+00 1613.0
9 TraesCS2D01G021700 chr5D 97.545 937 21 2 1649 2585 421118173 421117239 0.000000e+00 1602.0
10 TraesCS2D01G021700 chr5D 97.436 78 2 0 1573 1650 83355541 83355464 1.610000e-27 134.0
11 TraesCS2D01G021700 chr5D 97.436 78 2 0 1573 1650 133805932 133806009 1.610000e-27 134.0
12 TraesCS2D01G021700 chr1D 97.759 937 20 1 1649 2585 462735146 462734211 0.000000e+00 1613.0
13 TraesCS2D01G021700 chr1D 97.500 80 2 0 1571 1650 462735277 462735198 1.250000e-28 137.0
14 TraesCS2D01G021700 chr1D 100.000 29 0 0 260 288 221295912 221295884 1.000000e-03 54.7
15 TraesCS2D01G021700 chr6D 97.652 937 21 1 1649 2585 419874337 419873402 0.000000e+00 1607.0
16 TraesCS2D01G021700 chr6D 97.652 937 21 1 1649 2585 455026728 455025793 0.000000e+00 1607.0
17 TraesCS2D01G021700 chr6D 97.436 78 2 0 1573 1650 38169856 38169779 1.610000e-27 134.0
18 TraesCS2D01G021700 chr6D 97.436 78 2 0 1573 1650 419869711 419869634 1.610000e-27 134.0
19 TraesCS2D01G021700 chr2B 92.659 613 42 2 963 1572 13420020 13419408 0.000000e+00 880.0
20 TraesCS2D01G021700 chr2B 86.481 466 37 8 258 719 13421272 13420829 2.990000e-134 488.0
21 TraesCS2D01G021700 chr2B 94.737 95 4 1 737 831 7641616 7641709 2.070000e-31 147.0
22 TraesCS2D01G021700 chr2B 91.765 85 0 1 826 903 13420787 13420703 7.560000e-21 111.0
23 TraesCS2D01G021700 chr7B 87.302 252 30 1 1 250 662667929 662667678 1.170000e-73 287.0
24 TraesCS2D01G021700 chr5B 89.593 221 22 1 3 223 43858573 43858354 1.960000e-71 279.0
25 TraesCS2D01G021700 chr4A 87.665 227 23 4 27 251 90086997 90087220 2.550000e-65 259.0
26 TraesCS2D01G021700 chr4A 93.814 97 5 1 742 838 556768043 556767948 7.460000e-31 145.0
27 TraesCS2D01G021700 chr4D 85.217 230 28 4 27 256 374295123 374294900 5.560000e-57 231.0
28 TraesCS2D01G021700 chr4D 97.436 78 2 0 1573 1650 167491129 167491206 1.610000e-27 134.0
29 TraesCS2D01G021700 chr4D 97.436 78 2 0 1573 1650 192979572 192979495 1.610000e-27 134.0
30 TraesCS2D01G021700 chr4D 100.000 29 0 0 260 288 449965298 449965326 1.000000e-03 54.7
31 TraesCS2D01G021700 chr3A 93.878 98 4 2 738 834 499556316 499556220 2.070000e-31 147.0
32 TraesCS2D01G021700 chr3A 94.444 36 1 1 259 293 9516985 9517020 1.000000e-03 54.7
33 TraesCS2D01G021700 chr2A 93.878 98 4 2 745 841 1954530 1954626 2.070000e-31 147.0
34 TraesCS2D01G021700 chr2A 93.878 98 4 2 745 841 2084471 2084567 2.070000e-31 147.0
35 TraesCS2D01G021700 chr2A 80.838 167 23 8 83 243 631300 631463 3.490000e-24 122.0
36 TraesCS2D01G021700 chr2A 100.000 28 0 0 263 290 66088037 66088010 5.000000e-03 52.8
37 TraesCS2D01G021700 chr1B 95.604 91 2 2 745 835 436383665 436383753 7.460000e-31 145.0
38 TraesCS2D01G021700 chr1B 100.000 30 0 0 260 289 642765146 642765175 3.590000e-04 56.5
39 TraesCS2D01G021700 chr1A 90.826 109 6 4 734 839 448929726 448929833 2.680000e-30 143.0
40 TraesCS2D01G021700 chr6A 91.346 104 6 3 733 835 1090271 1090372 3.470000e-29 139.0
41 TraesCS2D01G021700 chr6A 97.436 78 2 0 1573 1650 595640989 595640912 1.610000e-27 134.0
42 TraesCS2D01G021700 chr3D 96.296 81 3 0 1570 1650 323799096 323799176 1.610000e-27 134.0
43 TraesCS2D01G021700 chr3D 100.000 32 0 0 255 286 164398471 164398440 2.780000e-05 60.2
44 TraesCS2D01G021700 chr3B 76.957 230 44 7 8 231 459250384 459250610 3.490000e-24 122.0
45 TraesCS2D01G021700 chr6B 75.796 157 31 5 78 231 690982746 690982594 3.570000e-09 73.1
46 TraesCS2D01G021700 chr5A 88.636 44 5 0 188 231 161919217 161919174 1.000000e-03 54.7
47 TraesCS2D01G021700 chr4B 92.105 38 2 1 257 293 527672908 527672945 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G021700 chr2D 9911579 9914163 2584 True 4774.0 4774 100.000000 1 2585 1 chr2D.!!$R1 2584
1 TraesCS2D01G021700 chr7D 106320262 106321197 935 True 1635.0 1635 98.186000 1649 2585 1 chr7D.!!$R1 936
2 TraesCS2D01G021700 chr7D 446929077 446930012 935 False 1618.0 1618 97.866000 1649 2585 1 chr7D.!!$F2 936
3 TraesCS2D01G021700 chr7D 563218078 563219013 935 True 1596.0 1596 97.439000 1649 2585 1 chr7D.!!$R3 936
4 TraesCS2D01G021700 chr7D 126046026 126046960 934 True 1594.0 1594 97.436000 1650 2585 1 chr7D.!!$R2 935
5 TraesCS2D01G021700 chr5D 421151883 421152818 935 True 1613.0 1613 97.759000 1649 2585 1 chr5D.!!$R3 936
6 TraesCS2D01G021700 chr5D 421117239 421118173 934 True 1602.0 1602 97.545000 1649 2585 1 chr5D.!!$R2 936
7 TraesCS2D01G021700 chr1D 462734211 462735277 1066 True 875.0 1613 97.629500 1571 2585 2 chr1D.!!$R2 1014
8 TraesCS2D01G021700 chr6D 455025793 455026728 935 True 1607.0 1607 97.652000 1649 2585 1 chr6D.!!$R2 936
9 TraesCS2D01G021700 chr6D 419869634 419874337 4703 True 870.5 1607 97.544000 1573 2585 2 chr6D.!!$R3 1012
10 TraesCS2D01G021700 chr2B 13419408 13421272 1864 True 493.0 880 90.301667 258 1572 3 chr2B.!!$R1 1314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.03309 GCGATCGGGGTTAGGGTTAG 59.967 60.0 18.3 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 2259 0.031585 GCTTTGTCCCACGGAAAACC 59.968 55.0 0.0 0.0 27.1 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.267642 GCCACTGCCGTATGTCCA 59.732 61.111 0.00 0.00 0.00 4.02
44 45 1.815421 GCCACTGCCGTATGTCCAG 60.815 63.158 0.00 0.00 0.00 3.86
45 46 1.815421 CCACTGCCGTATGTCCAGC 60.815 63.158 1.04 0.00 0.00 4.85
47 48 2.586079 CTGCCGTATGTCCAGCCG 60.586 66.667 0.00 0.00 0.00 5.52
48 49 4.155733 TGCCGTATGTCCAGCCGG 62.156 66.667 0.00 0.00 43.22 6.13
52 53 2.809706 GTATGTCCAGCCGGCGTA 59.190 61.111 23.20 7.67 0.00 4.42
53 54 1.299926 GTATGTCCAGCCGGCGTAG 60.300 63.158 23.20 15.26 0.00 3.51
54 55 1.454295 TATGTCCAGCCGGCGTAGA 60.454 57.895 23.20 16.51 0.00 2.59
55 56 1.731433 TATGTCCAGCCGGCGTAGAC 61.731 60.000 28.69 28.69 0.00 2.59
79 80 3.164269 CCCCCTGACCGGATCTGG 61.164 72.222 19.66 19.66 44.28 3.86
80 81 3.866582 CCCCTGACCGGATCTGGC 61.867 72.222 21.17 13.58 43.52 4.85
81 82 3.866582 CCCTGACCGGATCTGGCC 61.867 72.222 21.17 10.63 43.52 5.36
91 92 0.531753 GGATCTGGCCGAGAAGAAGC 60.532 60.000 8.66 0.00 33.12 3.86
92 93 0.873743 GATCTGGCCGAGAAGAAGCG 60.874 60.000 8.66 0.00 33.12 4.68
94 95 4.760047 TGGCCGAGAAGAAGCGCC 62.760 66.667 2.29 0.00 0.00 6.53
136 137 2.044555 GCTTTGCCTACGAACCCCC 61.045 63.158 0.00 0.00 0.00 5.40
137 138 1.743995 CTTTGCCTACGAACCCCCG 60.744 63.158 0.00 0.00 0.00 5.73
138 139 3.256824 TTTGCCTACGAACCCCCGG 62.257 63.158 0.00 0.00 0.00 5.73
141 142 4.157120 CCTACGAACCCCCGGCAG 62.157 72.222 0.00 0.00 0.00 4.85
142 143 4.832608 CTACGAACCCCCGGCAGC 62.833 72.222 0.00 0.00 0.00 5.25
160 161 3.626924 GGCGGCGGTATGGGAGAT 61.627 66.667 9.78 0.00 0.00 2.75
161 162 2.357517 GCGGCGGTATGGGAGATG 60.358 66.667 9.78 0.00 0.00 2.90
162 163 2.343758 CGGCGGTATGGGAGATGG 59.656 66.667 0.00 0.00 0.00 3.51
163 164 2.032681 GGCGGTATGGGAGATGGC 59.967 66.667 0.00 0.00 0.00 4.40
164 165 2.357517 GCGGTATGGGAGATGGCG 60.358 66.667 0.00 0.00 0.00 5.69
165 166 3.138625 CGGTATGGGAGATGGCGT 58.861 61.111 0.00 0.00 0.00 5.68
166 167 1.445942 CGGTATGGGAGATGGCGTT 59.554 57.895 0.00 0.00 0.00 4.84
167 168 0.880278 CGGTATGGGAGATGGCGTTG 60.880 60.000 0.00 0.00 0.00 4.10
168 169 0.535102 GGTATGGGAGATGGCGTTGG 60.535 60.000 0.00 0.00 0.00 3.77
169 170 0.468226 GTATGGGAGATGGCGTTGGA 59.532 55.000 0.00 0.00 0.00 3.53
170 171 0.758734 TATGGGAGATGGCGTTGGAG 59.241 55.000 0.00 0.00 0.00 3.86
171 172 0.982852 ATGGGAGATGGCGTTGGAGA 60.983 55.000 0.00 0.00 0.00 3.71
172 173 1.144936 GGGAGATGGCGTTGGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
173 174 1.144936 GGAGATGGCGTTGGAGAGG 59.855 63.158 0.00 0.00 0.00 3.69
174 175 1.330655 GGAGATGGCGTTGGAGAGGA 61.331 60.000 0.00 0.00 0.00 3.71
175 176 0.179097 GAGATGGCGTTGGAGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
176 177 1.153349 GATGGCGTTGGAGAGGACC 60.153 63.158 0.00 0.00 0.00 4.46
177 178 1.899437 GATGGCGTTGGAGAGGACCA 61.899 60.000 0.00 0.00 38.24 4.02
178 179 1.903877 ATGGCGTTGGAGAGGACCAG 61.904 60.000 0.00 0.00 41.19 4.00
179 180 2.283529 GGCGTTGGAGAGGACCAGA 61.284 63.158 0.00 0.00 41.19 3.86
180 181 1.216710 GCGTTGGAGAGGACCAGAG 59.783 63.158 0.00 0.00 41.19 3.35
181 182 1.251527 GCGTTGGAGAGGACCAGAGA 61.252 60.000 0.00 0.00 41.19 3.10
182 183 1.257743 CGTTGGAGAGGACCAGAGAA 58.742 55.000 0.00 0.00 41.19 2.87
183 184 1.618837 CGTTGGAGAGGACCAGAGAAA 59.381 52.381 0.00 0.00 41.19 2.52
184 185 2.353208 CGTTGGAGAGGACCAGAGAAAG 60.353 54.545 0.00 0.00 41.19 2.62
185 186 1.944177 TGGAGAGGACCAGAGAAAGG 58.056 55.000 0.00 0.00 34.77 3.11
186 187 1.199615 GGAGAGGACCAGAGAAAGGG 58.800 60.000 0.00 0.00 0.00 3.95
187 188 1.199615 GAGAGGACCAGAGAAAGGGG 58.800 60.000 0.00 0.00 0.00 4.79
188 189 0.252927 AGAGGACCAGAGAAAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
189 190 1.916206 GAGGACCAGAGAAAGGGGGC 61.916 65.000 0.00 0.00 0.00 5.80
190 191 2.269241 GACCAGAGAAAGGGGGCG 59.731 66.667 0.00 0.00 0.00 6.13
191 192 3.330720 ACCAGAGAAAGGGGGCGG 61.331 66.667 0.00 0.00 0.00 6.13
192 193 4.115199 CCAGAGAAAGGGGGCGGG 62.115 72.222 0.00 0.00 0.00 6.13
193 194 4.115199 CAGAGAAAGGGGGCGGGG 62.115 72.222 0.00 0.00 0.00 5.73
240 241 3.221389 CGGGAGCGATCGGGGTTA 61.221 66.667 18.30 0.00 0.00 2.85
241 242 2.735237 GGGAGCGATCGGGGTTAG 59.265 66.667 18.30 0.00 0.00 2.34
242 243 2.735237 GGAGCGATCGGGGTTAGG 59.265 66.667 18.30 0.00 0.00 2.69
243 244 2.735237 GAGCGATCGGGGTTAGGG 59.265 66.667 18.30 0.00 0.00 3.53
244 245 2.042230 AGCGATCGGGGTTAGGGT 60.042 61.111 18.30 0.00 0.00 4.34
245 246 1.683418 GAGCGATCGGGGTTAGGGTT 61.683 60.000 18.30 0.00 0.00 4.11
246 247 0.397535 AGCGATCGGGGTTAGGGTTA 60.398 55.000 18.30 0.00 0.00 2.85
247 248 0.033090 GCGATCGGGGTTAGGGTTAG 59.967 60.000 18.30 0.00 0.00 2.34
248 249 0.677842 CGATCGGGGTTAGGGTTAGG 59.322 60.000 7.38 0.00 0.00 2.69
249 250 1.054231 GATCGGGGTTAGGGTTAGGG 58.946 60.000 0.00 0.00 0.00 3.53
250 251 0.643822 ATCGGGGTTAGGGTTAGGGA 59.356 55.000 0.00 0.00 0.00 4.20
251 252 0.643822 TCGGGGTTAGGGTTAGGGAT 59.356 55.000 0.00 0.00 0.00 3.85
252 253 1.009923 TCGGGGTTAGGGTTAGGGATT 59.990 52.381 0.00 0.00 0.00 3.01
253 254 1.142262 CGGGGTTAGGGTTAGGGATTG 59.858 57.143 0.00 0.00 0.00 2.67
254 255 1.497716 GGGGTTAGGGTTAGGGATTGG 59.502 57.143 0.00 0.00 0.00 3.16
255 256 2.211532 GGGTTAGGGTTAGGGATTGGT 58.788 52.381 0.00 0.00 0.00 3.67
256 257 2.584031 GGGTTAGGGTTAGGGATTGGTT 59.416 50.000 0.00 0.00 0.00 3.67
296 297 6.491403 GGTTAGAAATGCCCTAACATGATGAT 59.509 38.462 0.00 0.00 44.63 2.45
343 347 1.603678 GCACTTGCATTGAACCCACTG 60.604 52.381 0.00 0.00 41.59 3.66
368 372 2.542411 GCAAGTGGCACTGTGAAGAAAG 60.542 50.000 22.83 4.21 43.97 2.62
406 410 2.810439 TTTTTCGGGGCAAAGTGATG 57.190 45.000 0.00 0.00 0.00 3.07
407 411 0.316841 TTTTCGGGGCAAAGTGATGC 59.683 50.000 0.00 0.00 45.67 3.91
439 443 8.193438 AGCATGAATAGAATTACCTTCAAAAGC 58.807 33.333 0.00 5.84 36.24 3.51
478 482 5.301835 ACAATATGGCTAGCTTCACTGAT 57.698 39.130 15.72 0.00 0.00 2.90
498 502 1.240641 TGCCGCAACAACCTGGTATG 61.241 55.000 0.00 3.63 0.00 2.39
499 503 1.241315 GCCGCAACAACCTGGTATGT 61.241 55.000 0.00 4.30 0.00 2.29
500 504 1.243902 CCGCAACAACCTGGTATGTT 58.756 50.000 16.48 16.48 40.24 2.71
506 510 5.179742 CGCAACAACCTGGTATGTTAAGTTA 59.820 40.000 19.68 0.00 37.66 2.24
519 523 3.071023 TGTTAAGTTACTCAGCCAGCAGT 59.929 43.478 0.00 0.00 0.00 4.40
554 558 1.361668 CGACATGGAGAACGCCCTTG 61.362 60.000 0.00 0.00 35.62 3.61
584 589 5.241949 CGACTATATATAGGCAGCCTTAGGG 59.758 48.000 22.26 7.55 38.33 3.53
585 590 6.357015 ACTATATATAGGCAGCCTTAGGGA 57.643 41.667 22.26 0.00 34.61 4.20
586 591 6.137559 ACTATATATAGGCAGCCTTAGGGAC 58.862 44.000 22.26 0.00 34.61 4.46
587 592 2.787339 TATAGGCAGCCTTAGGGACA 57.213 50.000 22.26 0.00 34.61 4.02
588 593 1.132500 ATAGGCAGCCTTAGGGACAC 58.868 55.000 22.26 0.00 34.61 3.67
590 595 2.125106 GCAGCCTTAGGGACACCG 60.125 66.667 0.00 0.00 43.47 4.94
593 598 0.036306 CAGCCTTAGGGACACCGTTT 59.964 55.000 0.00 0.00 43.47 3.60
595 600 0.250597 GCCTTAGGGACACCGTTTGT 60.251 55.000 0.00 0.00 43.10 2.83
596 601 1.816572 GCCTTAGGGACACCGTTTGTT 60.817 52.381 0.00 0.00 39.17 2.83
597 602 1.877443 CCTTAGGGACACCGTTTGTTG 59.123 52.381 0.00 0.00 39.17 3.33
598 603 2.485835 CCTTAGGGACACCGTTTGTTGA 60.486 50.000 0.00 0.00 39.17 3.18
599 604 3.207778 CTTAGGGACACCGTTTGTTGAA 58.792 45.455 0.00 0.00 39.17 2.69
600 605 1.675552 AGGGACACCGTTTGTTGAAG 58.324 50.000 0.00 0.00 39.17 3.02
601 606 0.666374 GGGACACCGTTTGTTGAAGG 59.334 55.000 0.00 0.00 39.17 3.46
602 607 1.385528 GGACACCGTTTGTTGAAGGT 58.614 50.000 0.00 0.00 39.17 3.50
605 610 2.112029 ACCGTTTGTTGAAGGTGGC 58.888 52.632 0.00 0.00 35.36 5.01
606 611 0.681564 ACCGTTTGTTGAAGGTGGCA 60.682 50.000 0.00 0.00 35.36 4.92
607 612 0.457851 CCGTTTGTTGAAGGTGGCAA 59.542 50.000 0.00 0.00 0.00 4.52
608 613 1.555477 CGTTTGTTGAAGGTGGCAAC 58.445 50.000 0.00 0.00 44.40 4.17
609 614 1.134175 CGTTTGTTGAAGGTGGCAACT 59.866 47.619 0.00 0.00 44.43 3.16
610 615 2.539476 GTTTGTTGAAGGTGGCAACTG 58.461 47.619 5.45 0.00 44.43 3.16
611 616 2.136298 TTGTTGAAGGTGGCAACTGA 57.864 45.000 5.45 0.00 44.43 3.41
612 617 2.363306 TGTTGAAGGTGGCAACTGAT 57.637 45.000 5.45 0.00 44.43 2.90
613 618 2.665165 TGTTGAAGGTGGCAACTGATT 58.335 42.857 5.45 0.00 44.43 2.57
614 619 2.361757 TGTTGAAGGTGGCAACTGATTG 59.638 45.455 5.45 0.00 44.43 2.67
633 638 1.202188 TGCTCGACGTATCAAGCTCAG 60.202 52.381 6.98 0.00 0.00 3.35
656 661 2.253452 CGACCAGCAACAGCAAGC 59.747 61.111 0.00 0.00 0.00 4.01
662 667 1.133790 CCAGCAACAGCAAGCTAATCC 59.866 52.381 0.00 0.00 39.50 3.01
744 760 8.690680 GATCAGGTCGATCCTACATAATTAAC 57.309 38.462 6.28 0.00 46.24 2.01
745 761 7.834881 TCAGGTCGATCCTACATAATTAACT 57.165 36.000 6.28 0.00 46.24 2.24
749 765 9.012161 AGGTCGATCCTACATAATTAACTACTC 57.988 37.037 4.93 0.00 46.10 2.59
750 766 8.242739 GGTCGATCCTACATAATTAACTACTCC 58.757 40.741 0.00 0.00 0.00 3.85
751 767 8.242739 GTCGATCCTACATAATTAACTACTCCC 58.757 40.741 0.00 0.00 0.00 4.30
752 768 8.168725 TCGATCCTACATAATTAACTACTCCCT 58.831 37.037 0.00 0.00 0.00 4.20
753 769 8.460428 CGATCCTACATAATTAACTACTCCCTC 58.540 40.741 0.00 0.00 0.00 4.30
754 770 8.667592 ATCCTACATAATTAACTACTCCCTCC 57.332 38.462 0.00 0.00 0.00 4.30
755 771 6.718454 TCCTACATAATTAACTACTCCCTCCG 59.282 42.308 0.00 0.00 0.00 4.63
756 772 6.492772 CCTACATAATTAACTACTCCCTCCGT 59.507 42.308 0.00 0.00 0.00 4.69
757 773 6.402456 ACATAATTAACTACTCCCTCCGTC 57.598 41.667 0.00 0.00 0.00 4.79
758 774 5.303845 ACATAATTAACTACTCCCTCCGTCC 59.696 44.000 0.00 0.00 0.00 4.79
759 775 2.149973 TTAACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
760 776 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
761 777 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
762 778 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
763 779 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
764 780 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
765 781 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
766 782 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
767 783 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
768 784 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
769 785 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
770 786 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
771 787 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
772 788 6.086095 TCCCTCCGTCCCATAATATAAGAAA 58.914 40.000 0.00 0.00 0.00 2.52
773 789 6.013984 TCCCTCCGTCCCATAATATAAGAAAC 60.014 42.308 0.00 0.00 0.00 2.78
774 790 5.867716 CCTCCGTCCCATAATATAAGAAACG 59.132 44.000 0.00 0.00 0.00 3.60
775 791 6.409524 TCCGTCCCATAATATAAGAAACGT 57.590 37.500 0.00 0.00 0.00 3.99
776 792 6.819284 TCCGTCCCATAATATAAGAAACGTT 58.181 36.000 0.00 0.00 0.00 3.99
777 793 7.274447 TCCGTCCCATAATATAAGAAACGTTT 58.726 34.615 14.57 14.57 0.00 3.60
778 794 7.769970 TCCGTCCCATAATATAAGAAACGTTTT 59.230 33.333 15.89 2.43 0.00 2.43
779 795 8.400186 CCGTCCCATAATATAAGAAACGTTTTT 58.600 33.333 15.89 6.62 0.00 1.94
780 796 9.217223 CGTCCCATAATATAAGAAACGTTTTTG 57.783 33.333 15.89 0.00 0.00 2.44
790 806 6.490566 AAGAAACGTTTTTGACACTACACT 57.509 33.333 15.89 0.00 0.00 3.55
791 807 7.599630 AAGAAACGTTTTTGACACTACACTA 57.400 32.000 15.89 0.00 0.00 2.74
792 808 7.230466 AGAAACGTTTTTGACACTACACTAG 57.770 36.000 15.89 0.00 0.00 2.57
793 809 6.815142 AGAAACGTTTTTGACACTACACTAGT 59.185 34.615 15.89 0.00 40.28 2.57
806 822 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
807 823 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
808 824 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
809 825 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
810 826 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
811 827 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
812 828 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
910 1574 2.302517 TTACCGGGCGGACTATCCCT 62.303 60.000 6.32 0.00 40.41 4.20
914 1578 1.749033 GGGCGGACTATCCCTTCAG 59.251 63.158 0.00 0.00 39.46 3.02
928 1592 1.593196 CTTCAGTTTGAAGCCGGTGA 58.407 50.000 1.90 0.00 46.03 4.02
929 1593 1.532868 CTTCAGTTTGAAGCCGGTGAG 59.467 52.381 1.90 0.00 46.03 3.51
930 1594 0.884704 TCAGTTTGAAGCCGGTGAGC 60.885 55.000 1.90 0.00 0.00 4.26
931 1595 1.600916 AGTTTGAAGCCGGTGAGCC 60.601 57.895 1.90 0.00 0.00 4.70
942 1606 2.927004 GGTGAGCCGTCAACATGAA 58.073 52.632 0.00 0.00 40.52 2.57
943 1607 0.517316 GGTGAGCCGTCAACATGAAC 59.483 55.000 0.00 0.00 40.52 3.18
944 1608 1.225855 GTGAGCCGTCAACATGAACA 58.774 50.000 0.00 0.00 33.27 3.18
945 1609 1.806542 GTGAGCCGTCAACATGAACAT 59.193 47.619 0.00 0.00 33.27 2.71
946 1610 2.076100 TGAGCCGTCAACATGAACATC 58.924 47.619 0.00 0.00 0.00 3.06
947 1611 2.076100 GAGCCGTCAACATGAACATCA 58.924 47.619 0.00 0.00 0.00 3.07
948 1612 1.806542 AGCCGTCAACATGAACATCAC 59.193 47.619 0.00 0.00 0.00 3.06
949 1613 1.806542 GCCGTCAACATGAACATCACT 59.193 47.619 0.00 0.00 0.00 3.41
950 1614 2.159653 GCCGTCAACATGAACATCACTC 60.160 50.000 0.00 0.00 0.00 3.51
951 1615 2.416547 CCGTCAACATGAACATCACTCC 59.583 50.000 0.00 0.00 0.00 3.85
952 1616 2.092681 CGTCAACATGAACATCACTCCG 59.907 50.000 0.00 0.00 0.00 4.63
953 1617 2.076100 TCAACATGAACATCACTCCGC 58.924 47.619 0.00 0.00 0.00 5.54
954 1618 1.131126 CAACATGAACATCACTCCGCC 59.869 52.381 0.00 0.00 0.00 6.13
955 1619 0.740868 ACATGAACATCACTCCGCCG 60.741 55.000 0.00 0.00 0.00 6.46
956 1620 1.815421 ATGAACATCACTCCGCCGC 60.815 57.895 0.00 0.00 0.00 6.53
957 1621 3.195698 GAACATCACTCCGCCGCC 61.196 66.667 0.00 0.00 0.00 6.13
958 1622 3.950794 GAACATCACTCCGCCGCCA 62.951 63.158 0.00 0.00 0.00 5.69
959 1623 3.958147 AACATCACTCCGCCGCCAG 62.958 63.158 0.00 0.00 0.00 4.85
960 1624 4.457496 CATCACTCCGCCGCCAGT 62.457 66.667 0.00 0.00 0.00 4.00
961 1625 2.758327 ATCACTCCGCCGCCAGTA 60.758 61.111 0.00 0.00 0.00 2.74
978 1642 4.944317 GCCAGTAAAATAAGAGCCTTCTGT 59.056 41.667 0.00 0.00 32.79 3.41
981 1645 6.314896 CCAGTAAAATAAGAGCCTTCTGTCAG 59.685 42.308 0.00 0.00 32.79 3.51
985 1649 6.859112 AAATAAGAGCCTTCTGTCAGTCTA 57.141 37.500 0.00 0.00 32.79 2.59
1024 1688 1.566211 CAGAGTGGTGGAGATGGAGT 58.434 55.000 0.00 0.00 0.00 3.85
1104 1768 4.959399 TGCATCCGCATCATGTCA 57.041 50.000 0.00 0.00 45.36 3.58
1140 1804 2.876219 GCCTTGCTGCTCTTCTGC 59.124 61.111 0.00 0.00 39.73 4.26
1168 1832 1.810412 GCAAAGTCGGTGAGAGTGGTT 60.810 52.381 0.00 0.00 31.71 3.67
1169 1833 1.867233 CAAAGTCGGTGAGAGTGGTTG 59.133 52.381 0.00 0.00 31.71 3.77
1173 1837 0.544357 TCGGTGAGAGTGGTTGGGAT 60.544 55.000 0.00 0.00 0.00 3.85
1221 1885 4.356405 TGTGACACTCATCCTTGATGTT 57.644 40.909 7.20 0.00 40.55 2.71
1271 1935 2.118313 TGGACATGTGCATTCCTGAG 57.882 50.000 16.89 0.00 0.00 3.35
1279 1943 1.133976 GTGCATTCCTGAGGCATAGGT 60.134 52.381 0.00 0.00 40.05 3.08
1284 1948 1.227380 CCTGAGGCATAGGTCGCAC 60.227 63.158 0.00 0.00 0.00 5.34
1285 1949 1.680522 CCTGAGGCATAGGTCGCACT 61.681 60.000 0.00 0.00 0.00 4.40
1286 1950 0.529337 CTGAGGCATAGGTCGCACTG 60.529 60.000 0.00 0.00 0.00 3.66
1287 1951 1.227380 GAGGCATAGGTCGCACTGG 60.227 63.158 0.00 0.00 0.00 4.00
1288 1952 2.897350 GGCATAGGTCGCACTGGC 60.897 66.667 0.00 0.00 0.00 4.85
1289 1953 2.187946 GCATAGGTCGCACTGGCT 59.812 61.111 0.00 0.00 38.10 4.75
1290 1954 1.450312 GCATAGGTCGCACTGGCTT 60.450 57.895 0.00 0.00 38.10 4.35
1291 1955 1.709147 GCATAGGTCGCACTGGCTTG 61.709 60.000 0.00 0.00 38.10 4.01
1294 1958 0.107831 TAGGTCGCACTGGCTTGTTT 59.892 50.000 0.00 0.00 38.10 2.83
1295 1959 1.008538 GGTCGCACTGGCTTGTTTG 60.009 57.895 0.00 0.00 38.10 2.93
1296 1960 1.008538 GTCGCACTGGCTTGTTTGG 60.009 57.895 0.00 0.00 38.10 3.28
1297 1961 1.453015 TCGCACTGGCTTGTTTGGT 60.453 52.632 0.00 0.00 38.10 3.67
1298 1962 1.299316 CGCACTGGCTTGTTTGGTG 60.299 57.895 0.00 0.00 38.10 4.17
1357 2024 0.449388 CTTTGCCGCTGTCAAGGATC 59.551 55.000 0.00 0.00 0.00 3.36
1364 2031 2.544685 CGCTGTCAAGGATCCAACTAG 58.455 52.381 15.82 6.60 0.00 2.57
1365 2032 2.284190 GCTGTCAAGGATCCAACTAGC 58.716 52.381 15.82 12.73 0.00 3.42
1385 2052 1.485294 TACAGGTTGTGGTCGGGCAT 61.485 55.000 0.00 0.00 0.00 4.40
1451 2118 2.618045 GGGCCAGCAAGCTAGTAAAGAA 60.618 50.000 4.39 0.00 0.00 2.52
1493 2160 3.898741 TGGATGGAATACACATACGGCTA 59.101 43.478 0.00 0.00 26.77 3.93
1508 2175 0.878086 GGCTACTCCGAGAGCATTGC 60.878 60.000 16.65 0.00 40.64 3.56
1517 2184 2.543641 CGAGAGCATTGCACTATCACA 58.456 47.619 11.91 0.00 28.14 3.58
1526 2193 6.185852 CATTGCACTATCACAATGTCTCAA 57.814 37.500 7.40 0.00 45.16 3.02
1536 2203 3.885297 CACAATGTCTCAAGGACTTGGTT 59.115 43.478 11.76 0.00 44.74 3.67
1560 2227 5.437191 TCCAAGGAGTAAGGGAAATTCTC 57.563 43.478 0.00 0.00 0.00 2.87
1563 2230 5.112686 CAAGGAGTAAGGGAAATTCTCGAG 58.887 45.833 5.93 5.93 0.00 4.04
1572 2239 3.118371 GGGAAATTCTCGAGGAAGCCTTA 60.118 47.826 13.56 0.00 37.36 2.69
1573 2240 4.123506 GGAAATTCTCGAGGAAGCCTTAG 58.876 47.826 13.56 0.00 37.36 2.18
1574 2241 4.383226 GGAAATTCTCGAGGAAGCCTTAGT 60.383 45.833 13.56 0.00 37.36 2.24
1575 2242 4.828072 AATTCTCGAGGAAGCCTTAGTT 57.172 40.909 13.56 0.00 37.36 2.24
1576 2243 5.934402 AATTCTCGAGGAAGCCTTAGTTA 57.066 39.130 13.56 0.00 37.36 2.24
1577 2244 4.985538 TTCTCGAGGAAGCCTTAGTTAG 57.014 45.455 13.56 0.00 31.76 2.34
1578 2245 4.232188 TCTCGAGGAAGCCTTAGTTAGA 57.768 45.455 13.56 0.00 31.76 2.10
1579 2246 4.597004 TCTCGAGGAAGCCTTAGTTAGAA 58.403 43.478 13.56 0.00 31.76 2.10
1580 2247 5.014858 TCTCGAGGAAGCCTTAGTTAGAAA 58.985 41.667 13.56 0.00 31.76 2.52
1581 2248 5.479375 TCTCGAGGAAGCCTTAGTTAGAAAA 59.521 40.000 13.56 0.00 31.76 2.29
1582 2249 6.154706 TCTCGAGGAAGCCTTAGTTAGAAAAT 59.845 38.462 13.56 0.00 31.76 1.82
1583 2250 7.341256 TCTCGAGGAAGCCTTAGTTAGAAAATA 59.659 37.037 13.56 0.00 31.76 1.40
1584 2251 7.490000 TCGAGGAAGCCTTAGTTAGAAAATAG 58.510 38.462 0.00 0.00 31.76 1.73
1585 2252 6.702282 CGAGGAAGCCTTAGTTAGAAAATAGG 59.298 42.308 0.00 0.00 31.76 2.57
1586 2253 6.901300 AGGAAGCCTTAGTTAGAAAATAGGG 58.099 40.000 0.00 0.00 0.00 3.53
1587 2254 6.447409 AGGAAGCCTTAGTTAGAAAATAGGGT 59.553 38.462 0.00 0.00 35.18 4.34
1588 2255 7.036790 AGGAAGCCTTAGTTAGAAAATAGGGTT 60.037 37.037 0.00 0.00 43.79 4.11
1589 2256 7.614583 GGAAGCCTTAGTTAGAAAATAGGGTTT 59.385 37.037 0.00 0.14 41.88 3.27
1590 2257 9.676861 GAAGCCTTAGTTAGAAAATAGGGTTTA 57.323 33.333 0.00 0.00 41.88 2.01
1591 2258 9.682465 AAGCCTTAGTTAGAAAATAGGGTTTAG 57.318 33.333 0.00 0.00 39.66 1.85
1592 2259 8.272889 AGCCTTAGTTAGAAAATAGGGTTTAGG 58.727 37.037 0.00 0.00 29.81 2.69
1593 2260 7.501559 GCCTTAGTTAGAAAATAGGGTTTAGGG 59.498 40.741 0.00 0.00 0.00 3.53
1594 2261 8.554870 CCTTAGTTAGAAAATAGGGTTTAGGGT 58.445 37.037 0.00 0.00 0.00 4.34
1595 2262 9.970553 CTTAGTTAGAAAATAGGGTTTAGGGTT 57.029 33.333 0.00 0.00 0.00 4.11
1598 2265 9.305555 AGTTAGAAAATAGGGTTTAGGGTTTTC 57.694 33.333 0.00 0.00 36.39 2.29
1599 2266 8.526147 GTTAGAAAATAGGGTTTAGGGTTTTCC 58.474 37.037 0.00 0.00 36.65 3.13
1600 2267 5.713389 AGAAAATAGGGTTTAGGGTTTTCCG 59.287 40.000 0.00 0.00 41.82 4.30
1601 2268 4.662966 AATAGGGTTTAGGGTTTTCCGT 57.337 40.909 0.00 0.00 41.82 4.69
1602 2269 2.281539 AGGGTTTAGGGTTTTCCGTG 57.718 50.000 0.00 0.00 41.82 4.94
1603 2270 1.202964 AGGGTTTAGGGTTTTCCGTGG 60.203 52.381 0.00 0.00 41.82 4.94
1604 2271 1.250328 GGTTTAGGGTTTTCCGTGGG 58.750 55.000 0.00 0.00 41.82 4.61
1605 2272 1.202915 GGTTTAGGGTTTTCCGTGGGA 60.203 52.381 0.00 0.00 41.82 4.37
1606 2273 1.881973 GTTTAGGGTTTTCCGTGGGAC 59.118 52.381 0.00 0.00 41.82 4.46
1607 2274 1.138568 TTAGGGTTTTCCGTGGGACA 58.861 50.000 0.00 0.00 41.82 4.02
1608 2275 1.138568 TAGGGTTTTCCGTGGGACAA 58.861 50.000 0.00 0.00 41.82 3.18
1609 2276 0.259356 AGGGTTTTCCGTGGGACAAA 59.741 50.000 0.00 0.00 41.82 2.83
1610 2277 0.671796 GGGTTTTCCGTGGGACAAAG 59.328 55.000 0.00 0.00 41.82 2.77
1611 2278 0.031585 GGTTTTCCGTGGGACAAAGC 59.968 55.000 0.00 0.00 44.16 3.51
1612 2279 0.031585 GTTTTCCGTGGGACAAAGCC 59.968 55.000 0.00 0.00 44.16 4.35
1613 2280 0.106419 TTTTCCGTGGGACAAAGCCT 60.106 50.000 0.00 0.00 44.16 4.58
1614 2281 0.536460 TTTCCGTGGGACAAAGCCTC 60.536 55.000 0.00 0.00 44.16 4.70
1615 2282 1.415672 TTCCGTGGGACAAAGCCTCT 61.416 55.000 0.00 0.00 44.16 3.69
1616 2283 1.073199 CCGTGGGACAAAGCCTCTT 59.927 57.895 0.00 0.00 44.16 2.85
1617 2284 0.955919 CCGTGGGACAAAGCCTCTTC 60.956 60.000 0.00 0.00 44.16 2.87
1618 2285 0.250295 CGTGGGACAAAGCCTCTTCA 60.250 55.000 0.00 0.00 44.16 3.02
1619 2286 1.239347 GTGGGACAAAGCCTCTTCAC 58.761 55.000 0.00 0.00 44.16 3.18
1620 2287 0.250295 TGGGACAAAGCCTCTTCACG 60.250 55.000 0.00 0.00 31.92 4.35
1621 2288 0.250338 GGGACAAAGCCTCTTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
1622 2289 1.149148 GGACAAAGCCTCTTCACGTC 58.851 55.000 0.00 0.00 0.00 4.34
1623 2290 1.270358 GGACAAAGCCTCTTCACGTCT 60.270 52.381 0.00 0.00 0.00 4.18
1624 2291 2.484889 GACAAAGCCTCTTCACGTCTT 58.515 47.619 0.00 0.00 0.00 3.01
1625 2292 2.872858 GACAAAGCCTCTTCACGTCTTT 59.127 45.455 0.00 0.00 0.00 2.52
1626 2293 2.872858 ACAAAGCCTCTTCACGTCTTTC 59.127 45.455 0.00 0.00 0.00 2.62
1627 2294 3.134458 CAAAGCCTCTTCACGTCTTTCT 58.866 45.455 0.00 0.00 0.00 2.52
1628 2295 4.202223 ACAAAGCCTCTTCACGTCTTTCTA 60.202 41.667 0.00 0.00 0.00 2.10
1629 2296 4.810191 AAGCCTCTTCACGTCTTTCTAT 57.190 40.909 0.00 0.00 0.00 1.98
1630 2297 5.916661 AAGCCTCTTCACGTCTTTCTATA 57.083 39.130 0.00 0.00 0.00 1.31
1631 2298 6.472686 AAGCCTCTTCACGTCTTTCTATAT 57.527 37.500 0.00 0.00 0.00 0.86
1632 2299 7.584122 AAGCCTCTTCACGTCTTTCTATATA 57.416 36.000 0.00 0.00 0.00 0.86
1633 2300 7.768807 AGCCTCTTCACGTCTTTCTATATAT 57.231 36.000 0.00 0.00 0.00 0.86
1634 2301 8.865420 AGCCTCTTCACGTCTTTCTATATATA 57.135 34.615 0.00 0.00 0.00 0.86
1635 2302 9.469097 AGCCTCTTCACGTCTTTCTATATATAT 57.531 33.333 0.00 0.00 0.00 0.86
1666 2333 3.073650 GCATACTCCCCCTCAATCTGAAT 59.926 47.826 0.00 0.00 0.00 2.57
1857 2524 2.147958 GTACGTGCATGGAAAACTGGA 58.852 47.619 11.36 0.00 0.00 3.86
1904 2571 3.162666 AGTTATCACACCAGAGAACCGA 58.837 45.455 0.00 0.00 39.81 4.69
1905 2572 3.056749 AGTTATCACACCAGAGAACCGAC 60.057 47.826 0.00 0.00 39.81 4.79
2113 2780 1.863155 ATCCGGACAACCTGCCCAAT 61.863 55.000 6.12 0.00 0.00 3.16
2169 2836 0.244721 GCCTTGCGAAATTTCAGCCT 59.755 50.000 22.98 0.00 0.00 4.58
2205 2872 5.492895 TCCTTTCACATAGCGTAAAATCCA 58.507 37.500 0.00 0.00 0.00 3.41
2260 2927 3.804873 GTGAGAGAAACTGACACACCTTC 59.195 47.826 0.00 0.00 33.10 3.46
2413 3080 1.298859 GCGGTGTGGAAGTAGGCTTG 61.299 60.000 0.00 0.00 34.61 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.815421 CTGGACATACGGCAGTGGC 60.815 63.158 6.62 6.62 40.13 5.01
27 28 1.815421 GCTGGACATACGGCAGTGG 60.815 63.158 0.00 0.00 42.32 4.00
29 30 2.584608 GGCTGGACATACGGCAGT 59.415 61.111 0.00 0.00 44.55 4.40
30 31 2.586079 CGGCTGGACATACGGCAG 60.586 66.667 0.00 0.00 44.55 4.85
34 35 3.128632 TACGCCGGCTGGACATACG 62.129 63.158 26.68 11.65 37.49 3.06
36 37 1.454295 TCTACGCCGGCTGGACATA 60.454 57.895 26.68 2.52 37.49 2.29
38 39 3.755628 GTCTACGCCGGCTGGACA 61.756 66.667 26.68 0.00 37.49 4.02
39 40 4.509737 GGTCTACGCCGGCTGGAC 62.510 72.222 26.68 25.15 37.49 4.02
62 63 3.164269 CCAGATCCGGTCAGGGGG 61.164 72.222 0.00 0.00 41.52 5.40
63 64 3.866582 GCCAGATCCGGTCAGGGG 61.867 72.222 14.28 7.36 41.52 4.79
64 65 3.866582 GGCCAGATCCGGTCAGGG 61.867 72.222 14.28 11.59 41.52 4.45
65 66 4.227134 CGGCCAGATCCGGTCAGG 62.227 72.222 2.24 6.23 45.38 3.86
72 73 0.531753 GCTTCTTCTCGGCCAGATCC 60.532 60.000 2.24 0.00 0.00 3.36
73 74 0.873743 CGCTTCTTCTCGGCCAGATC 60.874 60.000 2.24 0.00 0.00 2.75
74 75 1.142748 CGCTTCTTCTCGGCCAGAT 59.857 57.895 2.24 0.00 0.00 2.90
75 76 2.573869 CGCTTCTTCTCGGCCAGA 59.426 61.111 2.24 1.64 0.00 3.86
76 77 3.191539 GCGCTTCTTCTCGGCCAG 61.192 66.667 2.24 0.00 0.00 4.85
119 120 1.743995 CGGGGGTTCGTAGGCAAAG 60.744 63.158 0.00 0.00 0.00 2.77
120 121 2.348243 CGGGGGTTCGTAGGCAAA 59.652 61.111 0.00 0.00 0.00 3.68
121 122 3.708544 CCGGGGGTTCGTAGGCAA 61.709 66.667 0.00 0.00 0.00 4.52
124 125 4.157120 CTGCCGGGGGTTCGTAGG 62.157 72.222 2.18 0.00 0.00 3.18
125 126 4.832608 GCTGCCGGGGGTTCGTAG 62.833 72.222 2.18 0.00 0.00 3.51
143 144 3.626924 ATCTCCCATACCGCCGCC 61.627 66.667 0.00 0.00 0.00 6.13
144 145 2.357517 CATCTCCCATACCGCCGC 60.358 66.667 0.00 0.00 0.00 6.53
145 146 2.343758 CCATCTCCCATACCGCCG 59.656 66.667 0.00 0.00 0.00 6.46
146 147 2.032681 GCCATCTCCCATACCGCC 59.967 66.667 0.00 0.00 0.00 6.13
147 148 2.357517 CGCCATCTCCCATACCGC 60.358 66.667 0.00 0.00 0.00 5.68
148 149 0.880278 CAACGCCATCTCCCATACCG 60.880 60.000 0.00 0.00 0.00 4.02
149 150 0.535102 CCAACGCCATCTCCCATACC 60.535 60.000 0.00 0.00 0.00 2.73
150 151 0.468226 TCCAACGCCATCTCCCATAC 59.532 55.000 0.00 0.00 0.00 2.39
151 152 0.758734 CTCCAACGCCATCTCCCATA 59.241 55.000 0.00 0.00 0.00 2.74
152 153 0.982852 TCTCCAACGCCATCTCCCAT 60.983 55.000 0.00 0.00 0.00 4.00
153 154 1.612146 TCTCCAACGCCATCTCCCA 60.612 57.895 0.00 0.00 0.00 4.37
154 155 1.144936 CTCTCCAACGCCATCTCCC 59.855 63.158 0.00 0.00 0.00 4.30
155 156 1.144936 CCTCTCCAACGCCATCTCC 59.855 63.158 0.00 0.00 0.00 3.71
156 157 0.179097 GTCCTCTCCAACGCCATCTC 60.179 60.000 0.00 0.00 0.00 2.75
157 158 1.617947 GGTCCTCTCCAACGCCATCT 61.618 60.000 0.00 0.00 0.00 2.90
158 159 1.153349 GGTCCTCTCCAACGCCATC 60.153 63.158 0.00 0.00 0.00 3.51
159 160 1.903877 CTGGTCCTCTCCAACGCCAT 61.904 60.000 0.00 0.00 37.01 4.40
160 161 2.525629 TGGTCCTCTCCAACGCCA 60.526 61.111 0.00 0.00 34.24 5.69
161 162 2.232298 CTCTGGTCCTCTCCAACGCC 62.232 65.000 0.00 0.00 37.01 5.68
162 163 1.216710 CTCTGGTCCTCTCCAACGC 59.783 63.158 0.00 0.00 37.01 4.84
163 164 1.257743 TTCTCTGGTCCTCTCCAACG 58.742 55.000 0.00 0.00 37.01 4.10
164 165 2.027653 CCTTTCTCTGGTCCTCTCCAAC 60.028 54.545 0.00 0.00 37.01 3.77
165 166 2.260822 CCTTTCTCTGGTCCTCTCCAA 58.739 52.381 0.00 0.00 37.01 3.53
166 167 1.553417 CCCTTTCTCTGGTCCTCTCCA 60.553 57.143 0.00 0.00 36.00 3.86
167 168 1.199615 CCCTTTCTCTGGTCCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
168 169 1.199615 CCCCTTTCTCTGGTCCTCTC 58.800 60.000 0.00 0.00 0.00 3.20
169 170 0.252927 CCCCCTTTCTCTGGTCCTCT 60.253 60.000 0.00 0.00 0.00 3.69
170 171 1.916206 GCCCCCTTTCTCTGGTCCTC 61.916 65.000 0.00 0.00 0.00 3.71
171 172 1.925972 GCCCCCTTTCTCTGGTCCT 60.926 63.158 0.00 0.00 0.00 3.85
172 173 2.677848 GCCCCCTTTCTCTGGTCC 59.322 66.667 0.00 0.00 0.00 4.46
173 174 2.269241 CGCCCCCTTTCTCTGGTC 59.731 66.667 0.00 0.00 0.00 4.02
174 175 3.330720 CCGCCCCCTTTCTCTGGT 61.331 66.667 0.00 0.00 0.00 4.00
175 176 4.115199 CCCGCCCCCTTTCTCTGG 62.115 72.222 0.00 0.00 0.00 3.86
176 177 4.115199 CCCCGCCCCCTTTCTCTG 62.115 72.222 0.00 0.00 0.00 3.35
223 224 3.208884 CTAACCCCGATCGCTCCCG 62.209 68.421 10.32 0.00 0.00 5.14
224 225 2.735237 CTAACCCCGATCGCTCCC 59.265 66.667 10.32 0.00 0.00 4.30
225 226 2.735237 CCTAACCCCGATCGCTCC 59.265 66.667 10.32 0.00 0.00 4.70
226 227 1.683418 AACCCTAACCCCGATCGCTC 61.683 60.000 10.32 0.00 0.00 5.03
227 228 0.397535 TAACCCTAACCCCGATCGCT 60.398 55.000 10.32 0.00 0.00 4.93
228 229 0.033090 CTAACCCTAACCCCGATCGC 59.967 60.000 10.32 0.00 0.00 4.58
229 230 0.677842 CCTAACCCTAACCCCGATCG 59.322 60.000 8.51 8.51 0.00 3.69
230 231 1.054231 CCCTAACCCTAACCCCGATC 58.946 60.000 0.00 0.00 0.00 3.69
231 232 0.643822 TCCCTAACCCTAACCCCGAT 59.356 55.000 0.00 0.00 0.00 4.18
232 233 0.643822 ATCCCTAACCCTAACCCCGA 59.356 55.000 0.00 0.00 0.00 5.14
233 234 1.142262 CAATCCCTAACCCTAACCCCG 59.858 57.143 0.00 0.00 0.00 5.73
234 235 1.497716 CCAATCCCTAACCCTAACCCC 59.502 57.143 0.00 0.00 0.00 4.95
235 236 2.211532 ACCAATCCCTAACCCTAACCC 58.788 52.381 0.00 0.00 0.00 4.11
236 237 5.658198 ATAACCAATCCCTAACCCTAACC 57.342 43.478 0.00 0.00 0.00 2.85
239 240 9.962835 CCTATATATAACCAATCCCTAACCCTA 57.037 37.037 0.00 0.00 0.00 3.53
240 241 7.855080 CCCTATATATAACCAATCCCTAACCCT 59.145 40.741 0.00 0.00 0.00 4.34
241 242 7.073343 CCCCTATATATAACCAATCCCTAACCC 59.927 44.444 0.00 0.00 0.00 4.11
242 243 7.853003 TCCCCTATATATAACCAATCCCTAACC 59.147 40.741 0.00 0.00 0.00 2.85
243 244 8.865244 TCCCCTATATATAACCAATCCCTAAC 57.135 38.462 0.00 0.00 0.00 2.34
244 245 9.684702 GATCCCCTATATATAACCAATCCCTAA 57.315 37.037 0.00 0.00 0.00 2.69
245 246 7.954056 CGATCCCCTATATATAACCAATCCCTA 59.046 40.741 0.00 0.00 0.00 3.53
246 247 6.787957 CGATCCCCTATATATAACCAATCCCT 59.212 42.308 0.00 0.00 0.00 4.20
247 248 6.013639 CCGATCCCCTATATATAACCAATCCC 60.014 46.154 0.00 0.00 0.00 3.85
248 249 6.557633 ACCGATCCCCTATATATAACCAATCC 59.442 42.308 0.00 0.00 0.00 3.01
249 250 7.613551 ACCGATCCCCTATATATAACCAATC 57.386 40.000 0.00 0.00 0.00 2.67
250 251 9.155785 CTAACCGATCCCCTATATATAACCAAT 57.844 37.037 0.00 0.00 0.00 3.16
251 252 8.346067 TCTAACCGATCCCCTATATATAACCAA 58.654 37.037 0.00 0.00 0.00 3.67
252 253 7.885961 TCTAACCGATCCCCTATATATAACCA 58.114 38.462 0.00 0.00 0.00 3.67
253 254 8.773033 TTCTAACCGATCCCCTATATATAACC 57.227 38.462 0.00 0.00 0.00 2.85
256 257 8.867097 GCATTTCTAACCGATCCCCTATATATA 58.133 37.037 0.00 0.00 0.00 0.86
296 297 1.610624 GGGTCATGTCGCTCCAAAAGA 60.611 52.381 0.00 0.00 0.00 2.52
343 347 0.819259 TCACAGTGCCACTTGCCTTC 60.819 55.000 0.00 0.00 40.16 3.46
387 391 1.270041 GCATCACTTTGCCCCGAAAAA 60.270 47.619 0.00 0.00 36.60 1.94
388 392 0.316841 GCATCACTTTGCCCCGAAAA 59.683 50.000 0.00 0.00 36.60 2.29
406 410 8.115490 AGGTAATTCTATTCATGCTTTATGGC 57.885 34.615 0.00 0.00 37.39 4.40
428 432 8.612619 CGTAATTCTATGTATGCTTTTGAAGGT 58.387 33.333 0.00 0.00 0.00 3.50
442 446 9.856488 CTAGCCATATTGTACGTAATTCTATGT 57.144 33.333 0.00 0.00 0.00 2.29
443 447 8.808529 GCTAGCCATATTGTACGTAATTCTATG 58.191 37.037 2.29 3.18 0.00 2.23
449 453 6.645415 GTGAAGCTAGCCATATTGTACGTAAT 59.355 38.462 12.13 0.00 0.00 1.89
465 469 0.654683 GCGGCAATCAGTGAAGCTAG 59.345 55.000 17.25 13.42 0.00 3.42
478 482 0.538516 ATACCAGGTTGTTGCGGCAA 60.539 50.000 12.11 12.11 0.00 4.52
498 502 3.433615 CACTGCTGGCTGAGTAACTTAAC 59.566 47.826 6.47 0.00 0.00 2.01
499 503 3.664107 CACTGCTGGCTGAGTAACTTAA 58.336 45.455 6.47 0.00 0.00 1.85
500 504 2.612972 GCACTGCTGGCTGAGTAACTTA 60.613 50.000 6.47 0.00 0.00 2.24
506 510 2.281345 GTGCACTGCTGGCTGAGT 60.281 61.111 10.32 0.00 0.00 3.41
535 539 1.079127 AAGGGCGTTCTCCATGTCG 60.079 57.895 0.00 0.00 0.00 4.35
554 558 6.207810 AGGCTGCCTATATATAGTCGCTAATC 59.792 42.308 21.98 7.23 28.47 1.75
561 565 6.265876 GTCCCTAAGGCTGCCTATATATAGTC 59.734 46.154 23.69 6.44 31.13 2.59
584 589 1.064952 CCACCTTCAACAAACGGTGTC 59.935 52.381 6.55 0.00 44.13 3.67
585 590 1.099689 CCACCTTCAACAAACGGTGT 58.900 50.000 6.55 0.00 44.13 4.16
586 591 0.248866 GCCACCTTCAACAAACGGTG 60.249 55.000 0.00 0.00 44.98 4.94
587 592 0.681564 TGCCACCTTCAACAAACGGT 60.682 50.000 0.00 0.00 0.00 4.83
588 593 0.457851 TTGCCACCTTCAACAAACGG 59.542 50.000 0.00 0.00 0.00 4.44
590 595 2.165437 TCAGTTGCCACCTTCAACAAAC 59.835 45.455 8.33 0.00 44.50 2.93
593 598 2.361757 CAATCAGTTGCCACCTTCAACA 59.638 45.455 8.33 0.00 44.50 3.33
605 610 3.179048 TGATACGTCGAGCAATCAGTTG 58.821 45.455 0.00 0.00 38.39 3.16
606 611 3.503827 TGATACGTCGAGCAATCAGTT 57.496 42.857 0.00 0.00 0.00 3.16
607 612 3.439293 CTTGATACGTCGAGCAATCAGT 58.561 45.455 0.00 0.00 30.53 3.41
615 620 1.862008 GCCTGAGCTTGATACGTCGAG 60.862 57.143 0.00 0.00 38.66 4.04
616 621 0.100682 GCCTGAGCTTGATACGTCGA 59.899 55.000 0.00 0.00 35.50 4.20
617 622 1.202973 CGCCTGAGCTTGATACGTCG 61.203 60.000 0.00 0.00 36.60 5.12
618 623 0.872021 CCGCCTGAGCTTGATACGTC 60.872 60.000 0.00 0.00 36.60 4.34
619 624 1.141881 CCGCCTGAGCTTGATACGT 59.858 57.895 0.00 0.00 36.60 3.57
620 625 2.240500 GCCGCCTGAGCTTGATACG 61.241 63.158 0.00 0.00 36.60 3.06
621 626 1.889573 GGCCGCCTGAGCTTGATAC 60.890 63.158 0.71 0.00 36.60 2.24
656 661 2.351544 GGCGTACCTAGCTTCGGATTAG 60.352 54.545 8.58 0.00 34.52 1.73
662 667 0.102481 ACATGGCGTACCTAGCTTCG 59.898 55.000 0.00 0.00 36.63 3.79
735 751 5.279356 GGGACGGAGGGAGTAGTTAATTATG 60.279 48.000 0.00 0.00 0.00 1.90
739 755 2.023695 TGGGACGGAGGGAGTAGTTAAT 60.024 50.000 0.00 0.00 0.00 1.40
741 757 1.002069 TGGGACGGAGGGAGTAGTTA 58.998 55.000 0.00 0.00 0.00 2.24
743 759 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
744 760 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
745 761 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
749 765 6.171213 GTTTCTTATATTATGGGACGGAGGG 58.829 44.000 0.00 0.00 0.00 4.30
750 766 5.867716 CGTTTCTTATATTATGGGACGGAGG 59.132 44.000 0.00 0.00 0.00 4.30
751 767 6.453092 ACGTTTCTTATATTATGGGACGGAG 58.547 40.000 0.00 0.00 32.81 4.63
752 768 6.409524 ACGTTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 32.81 4.69
753 769 7.486802 AAACGTTTCTTATATTATGGGACGG 57.513 36.000 7.96 0.00 32.81 4.79
754 770 9.217223 CAAAAACGTTTCTTATATTATGGGACG 57.783 33.333 15.01 0.00 0.00 4.79
764 780 9.316730 AGTGTAGTGTCAAAAACGTTTCTTATA 57.683 29.630 15.01 0.00 0.00 0.98
765 781 8.205131 AGTGTAGTGTCAAAAACGTTTCTTAT 57.795 30.769 15.01 0.00 0.00 1.73
766 782 7.599630 AGTGTAGTGTCAAAAACGTTTCTTA 57.400 32.000 15.01 0.00 0.00 2.10
767 783 6.490566 AGTGTAGTGTCAAAAACGTTTCTT 57.509 33.333 15.01 8.16 0.00 2.52
768 784 6.815142 ACTAGTGTAGTGTCAAAAACGTTTCT 59.185 34.615 15.01 8.37 37.69 2.52
769 785 6.997222 ACTAGTGTAGTGTCAAAAACGTTTC 58.003 36.000 15.01 2.04 37.69 2.78
770 786 6.973229 ACTAGTGTAGTGTCAAAAACGTTT 57.027 33.333 7.96 7.96 37.69 3.60
783 799 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
784 800 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
785 801 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
803 819 8.148999 ACTCCCTCCGTTCAATAATATAAGAAC 58.851 37.037 7.86 7.86 37.57 3.01
804 820 8.258850 ACTCCCTCCGTTCAATAATATAAGAA 57.741 34.615 0.00 0.00 0.00 2.52
805 821 7.850935 ACTCCCTCCGTTCAATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
806 822 8.804204 ACTACTCCCTCCGTTCAATAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
807 823 8.716674 ACTACTCCCTCCGTTCAATAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
808 824 9.986157 ATACTACTCCCTCCGTTCAATAATATA 57.014 33.333 0.00 0.00 0.00 0.86
809 825 8.750298 CATACTACTCCCTCCGTTCAATAATAT 58.250 37.037 0.00 0.00 0.00 1.28
810 826 7.727186 ACATACTACTCCCTCCGTTCAATAATA 59.273 37.037 0.00 0.00 0.00 0.98
811 827 6.553852 ACATACTACTCCCTCCGTTCAATAAT 59.446 38.462 0.00 0.00 0.00 1.28
812 828 5.895534 ACATACTACTCCCTCCGTTCAATAA 59.104 40.000 0.00 0.00 0.00 1.40
813 829 5.452255 ACATACTACTCCCTCCGTTCAATA 58.548 41.667 0.00 0.00 0.00 1.90
814 830 4.287552 ACATACTACTCCCTCCGTTCAAT 58.712 43.478 0.00 0.00 0.00 2.57
815 831 3.705051 ACATACTACTCCCTCCGTTCAA 58.295 45.455 0.00 0.00 0.00 2.69
816 832 3.377253 ACATACTACTCCCTCCGTTCA 57.623 47.619 0.00 0.00 0.00 3.18
817 833 5.841957 TTAACATACTACTCCCTCCGTTC 57.158 43.478 0.00 0.00 0.00 3.95
818 834 6.803366 ATTTAACATACTACTCCCTCCGTT 57.197 37.500 0.00 0.00 0.00 4.44
819 835 6.407752 CCAATTTAACATACTACTCCCTCCGT 60.408 42.308 0.00 0.00 0.00 4.69
820 836 5.989777 CCAATTTAACATACTACTCCCTCCG 59.010 44.000 0.00 0.00 0.00 4.63
821 837 6.126565 ACCCAATTTAACATACTACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
822 838 6.896883 ACCCAATTTAACATACTACTCCCTC 58.103 40.000 0.00 0.00 0.00 4.30
823 839 6.407752 CGACCCAATTTAACATACTACTCCCT 60.408 42.308 0.00 0.00 0.00 4.20
824 840 5.756833 CGACCCAATTTAACATACTACTCCC 59.243 44.000 0.00 0.00 0.00 4.30
910 1574 1.593196 CTCACCGGCTTCAAACTGAA 58.407 50.000 0.00 0.00 34.79 3.02
914 1578 2.954611 GGCTCACCGGCTTCAAAC 59.045 61.111 0.00 0.00 34.85 2.93
928 1592 1.806542 GTGATGTTCATGTTGACGGCT 59.193 47.619 0.00 0.00 0.00 5.52
929 1593 1.806542 AGTGATGTTCATGTTGACGGC 59.193 47.619 0.00 0.00 0.00 5.68
930 1594 2.416547 GGAGTGATGTTCATGTTGACGG 59.583 50.000 0.00 0.00 0.00 4.79
931 1595 2.092681 CGGAGTGATGTTCATGTTGACG 59.907 50.000 0.00 0.00 0.00 4.35
933 1597 2.076100 GCGGAGTGATGTTCATGTTGA 58.924 47.619 0.00 0.00 0.00 3.18
935 1599 1.453155 GGCGGAGTGATGTTCATGTT 58.547 50.000 0.00 0.00 0.00 2.71
936 1600 0.740868 CGGCGGAGTGATGTTCATGT 60.741 55.000 0.00 0.00 0.00 3.21
939 1603 2.434185 GCGGCGGAGTGATGTTCA 60.434 61.111 9.78 0.00 0.00 3.18
942 1606 4.457496 CTGGCGGCGGAGTGATGT 62.457 66.667 13.52 0.00 0.00 3.06
943 1607 2.572095 TTACTGGCGGCGGAGTGATG 62.572 60.000 26.40 0.00 0.00 3.07
944 1608 1.895020 TTTACTGGCGGCGGAGTGAT 61.895 55.000 26.40 3.67 0.00 3.06
945 1609 2.102109 TTTTACTGGCGGCGGAGTGA 62.102 55.000 26.40 7.36 0.00 3.41
946 1610 1.024579 ATTTTACTGGCGGCGGAGTG 61.025 55.000 26.40 4.51 0.00 3.51
947 1611 0.538118 TATTTTACTGGCGGCGGAGT 59.462 50.000 26.40 15.98 0.00 3.85
948 1612 1.597663 CTTATTTTACTGGCGGCGGAG 59.402 52.381 26.40 10.06 0.00 4.63
949 1613 1.207570 TCTTATTTTACTGGCGGCGGA 59.792 47.619 26.40 2.73 0.00 5.54
950 1614 1.597663 CTCTTATTTTACTGGCGGCGG 59.402 52.381 17.49 17.49 0.00 6.13
951 1615 1.003866 GCTCTTATTTTACTGGCGGCG 60.004 52.381 0.51 0.51 0.00 6.46
952 1616 1.333931 GGCTCTTATTTTACTGGCGGC 59.666 52.381 0.00 0.00 0.00 6.53
953 1617 2.919228 AGGCTCTTATTTTACTGGCGG 58.081 47.619 0.00 0.00 0.00 6.13
954 1618 4.034510 CAGAAGGCTCTTATTTTACTGGCG 59.965 45.833 0.00 0.00 0.00 5.69
955 1619 4.944317 ACAGAAGGCTCTTATTTTACTGGC 59.056 41.667 0.00 0.00 0.00 4.85
956 1620 6.173339 TGACAGAAGGCTCTTATTTTACTGG 58.827 40.000 0.00 0.00 0.00 4.00
957 1621 6.876257 ACTGACAGAAGGCTCTTATTTTACTG 59.124 38.462 10.08 0.00 0.00 2.74
958 1622 7.010339 ACTGACAGAAGGCTCTTATTTTACT 57.990 36.000 10.08 0.00 0.00 2.24
959 1623 7.100409 AGACTGACAGAAGGCTCTTATTTTAC 58.900 38.462 10.08 0.00 24.11 2.01
960 1624 7.246171 AGACTGACAGAAGGCTCTTATTTTA 57.754 36.000 10.08 0.00 24.11 1.52
961 1625 6.120507 AGACTGACAGAAGGCTCTTATTTT 57.879 37.500 10.08 0.00 24.11 1.82
978 1642 2.038557 GTCCTGCCAACCTTTAGACTGA 59.961 50.000 0.00 0.00 0.00 3.41
981 1645 2.561478 TGTCCTGCCAACCTTTAGAC 57.439 50.000 0.00 0.00 0.00 2.59
985 1649 1.331214 CACATGTCCTGCCAACCTTT 58.669 50.000 0.00 0.00 0.00 3.11
1096 1760 0.392998 GTGAAGGGCGGTGACATGAT 60.393 55.000 0.00 0.00 0.00 2.45
1125 1789 1.360194 CGGAGCAGAAGAGCAGCAAG 61.360 60.000 0.00 0.00 36.85 4.01
1221 1885 2.642254 CGTTCCGAGTAGCCACCCA 61.642 63.158 0.00 0.00 0.00 4.51
1271 1935 2.876368 AAGCCAGTGCGACCTATGCC 62.876 60.000 0.00 0.00 44.33 4.40
1279 1943 1.453015 ACCAAACAAGCCAGTGCGA 60.453 52.632 0.00 0.00 44.33 5.10
1284 1948 1.283793 CGAGCACCAAACAAGCCAG 59.716 57.895 0.00 0.00 0.00 4.85
1285 1949 2.844451 GCGAGCACCAAACAAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
1286 1950 2.050077 GCGAGCACCAAACAAGCC 60.050 61.111 0.00 0.00 0.00 4.35
1287 1951 1.370900 CAGCGAGCACCAAACAAGC 60.371 57.895 0.00 0.00 0.00 4.01
1288 1952 1.283793 CCAGCGAGCACCAAACAAG 59.716 57.895 0.00 0.00 0.00 3.16
1289 1953 2.192861 CCCAGCGAGCACCAAACAA 61.193 57.895 0.00 0.00 0.00 2.83
1290 1954 2.594303 CCCAGCGAGCACCAAACA 60.594 61.111 0.00 0.00 0.00 2.83
1291 1955 3.365265 CCCCAGCGAGCACCAAAC 61.365 66.667 0.00 0.00 0.00 2.93
1296 1960 4.767255 CACCTCCCCAGCGAGCAC 62.767 72.222 0.00 0.00 0.00 4.40
1341 2008 2.123248 TTGGATCCTTGACAGCGGCA 62.123 55.000 14.23 0.00 0.00 5.69
1343 2010 0.036010 AGTTGGATCCTTGACAGCGG 60.036 55.000 14.23 0.00 0.00 5.52
1347 2014 4.093743 TGTAGCTAGTTGGATCCTTGACA 58.906 43.478 14.23 3.35 0.00 3.58
1349 2016 3.706594 CCTGTAGCTAGTTGGATCCTTGA 59.293 47.826 14.23 0.00 0.00 3.02
1357 2024 2.038557 ACCACAACCTGTAGCTAGTTGG 59.961 50.000 21.61 14.24 44.05 3.77
1364 2031 1.375523 CCCGACCACAACCTGTAGC 60.376 63.158 0.00 0.00 0.00 3.58
1365 2032 1.375523 GCCCGACCACAACCTGTAG 60.376 63.158 0.00 0.00 0.00 2.74
1385 2052 0.327924 CAGGTTGTACTGCCCCATGA 59.672 55.000 0.00 0.00 0.00 3.07
1493 2160 1.186200 TAGTGCAATGCTCTCGGAGT 58.814 50.000 13.38 0.00 34.22 3.85
1522 2189 3.319122 CCTTGGAAAACCAAGTCCTTGAG 59.681 47.826 22.03 6.54 43.85 3.02
1526 2193 2.514160 ACTCCTTGGAAAACCAAGTCCT 59.486 45.455 22.03 6.16 43.85 3.85
1543 2210 3.705072 TCCTCGAGAATTTCCCTTACTCC 59.295 47.826 15.71 0.00 0.00 3.85
1545 2212 4.383226 GCTTCCTCGAGAATTTCCCTTACT 60.383 45.833 15.71 0.00 32.82 2.24
1549 2216 1.210722 GGCTTCCTCGAGAATTTCCCT 59.789 52.381 15.71 0.00 32.82 4.20
1551 2218 2.700722 AGGCTTCCTCGAGAATTTCC 57.299 50.000 15.71 8.20 32.82 3.13
1560 2227 6.702282 CCTATTTTCTAACTAAGGCTTCCTCG 59.298 42.308 1.30 0.00 30.89 4.63
1563 2230 6.660800 ACCCTATTTTCTAACTAAGGCTTCC 58.339 40.000 1.30 0.00 0.00 3.46
1572 2239 9.305555 GAAAACCCTAAACCCTATTTTCTAACT 57.694 33.333 0.00 0.00 34.65 2.24
1573 2240 8.526147 GGAAAACCCTAAACCCTATTTTCTAAC 58.474 37.037 0.00 0.00 36.65 2.34
1574 2241 7.394077 CGGAAAACCCTAAACCCTATTTTCTAA 59.606 37.037 0.00 0.00 36.65 2.10
1575 2242 6.885918 CGGAAAACCCTAAACCCTATTTTCTA 59.114 38.462 0.00 0.00 36.65 2.10
1576 2243 5.713389 CGGAAAACCCTAAACCCTATTTTCT 59.287 40.000 0.00 0.00 36.65 2.52
1577 2244 5.477984 ACGGAAAACCCTAAACCCTATTTTC 59.522 40.000 0.00 0.00 36.02 2.29
1578 2245 5.244402 CACGGAAAACCCTAAACCCTATTTT 59.756 40.000 0.00 0.00 0.00 1.82
1579 2246 4.768448 CACGGAAAACCCTAAACCCTATTT 59.232 41.667 0.00 0.00 0.00 1.40
1580 2247 4.338012 CACGGAAAACCCTAAACCCTATT 58.662 43.478 0.00 0.00 0.00 1.73
1581 2248 3.308617 CCACGGAAAACCCTAAACCCTAT 60.309 47.826 0.00 0.00 0.00 2.57
1582 2249 2.040145 CCACGGAAAACCCTAAACCCTA 59.960 50.000 0.00 0.00 0.00 3.53
1583 2250 1.202964 CCACGGAAAACCCTAAACCCT 60.203 52.381 0.00 0.00 0.00 4.34
1584 2251 1.250328 CCACGGAAAACCCTAAACCC 58.750 55.000 0.00 0.00 0.00 4.11
1585 2252 1.202915 TCCCACGGAAAACCCTAAACC 60.203 52.381 0.00 0.00 0.00 3.27
1586 2253 1.881973 GTCCCACGGAAAACCCTAAAC 59.118 52.381 0.00 0.00 31.38 2.01
1587 2254 1.493871 TGTCCCACGGAAAACCCTAAA 59.506 47.619 0.00 0.00 31.38 1.85
1588 2255 1.138568 TGTCCCACGGAAAACCCTAA 58.861 50.000 0.00 0.00 31.38 2.69
1589 2256 1.138568 TTGTCCCACGGAAAACCCTA 58.861 50.000 0.00 0.00 31.38 3.53
1590 2257 0.259356 TTTGTCCCACGGAAAACCCT 59.741 50.000 0.00 0.00 27.10 4.34
1591 2258 0.671796 CTTTGTCCCACGGAAAACCC 59.328 55.000 0.00 0.00 27.10 4.11
1592 2259 0.031585 GCTTTGTCCCACGGAAAACC 59.968 55.000 0.00 0.00 27.10 3.27
1593 2260 0.031585 GGCTTTGTCCCACGGAAAAC 59.968 55.000 0.00 0.00 27.10 2.43
1594 2261 0.106419 AGGCTTTGTCCCACGGAAAA 60.106 50.000 0.00 0.00 31.38 2.29
1595 2262 0.536460 GAGGCTTTGTCCCACGGAAA 60.536 55.000 0.00 0.00 31.38 3.13
1596 2263 1.072505 GAGGCTTTGTCCCACGGAA 59.927 57.895 0.00 0.00 31.38 4.30
1597 2264 1.415672 AAGAGGCTTTGTCCCACGGA 61.416 55.000 0.00 0.00 0.00 4.69
1598 2265 0.955919 GAAGAGGCTTTGTCCCACGG 60.956 60.000 0.00 0.00 0.00 4.94
1599 2266 0.250295 TGAAGAGGCTTTGTCCCACG 60.250 55.000 0.00 0.00 0.00 4.94
1600 2267 1.239347 GTGAAGAGGCTTTGTCCCAC 58.761 55.000 0.00 0.00 0.00 4.61
1601 2268 0.250295 CGTGAAGAGGCTTTGTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
1602 2269 0.250338 ACGTGAAGAGGCTTTGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
1603 2270 1.149148 GACGTGAAGAGGCTTTGTCC 58.851 55.000 0.00 0.00 0.00 4.02
1604 2271 2.156343 AGACGTGAAGAGGCTTTGTC 57.844 50.000 0.00 0.00 0.00 3.18
1605 2272 2.622064 AAGACGTGAAGAGGCTTTGT 57.378 45.000 0.00 0.00 0.00 2.83
1606 2273 3.134458 AGAAAGACGTGAAGAGGCTTTG 58.866 45.455 1.41 0.00 0.00 2.77
1607 2274 3.477210 AGAAAGACGTGAAGAGGCTTT 57.523 42.857 0.00 0.00 0.00 3.51
1608 2275 4.810191 ATAGAAAGACGTGAAGAGGCTT 57.190 40.909 0.00 0.00 0.00 4.35
1609 2276 7.768807 ATATATAGAAAGACGTGAAGAGGCT 57.231 36.000 0.00 0.00 0.00 4.58
1629 2296 8.934697 GGGGGAGTATGCTGATTGTTATATATA 58.065 37.037 0.00 0.00 0.00 0.86
1630 2297 7.629315 AGGGGGAGTATGCTGATTGTTATATAT 59.371 37.037 0.00 0.00 0.00 0.86
1631 2298 6.965866 AGGGGGAGTATGCTGATTGTTATATA 59.034 38.462 0.00 0.00 0.00 0.86
1632 2299 5.792712 AGGGGGAGTATGCTGATTGTTATAT 59.207 40.000 0.00 0.00 0.00 0.86
1633 2300 5.162637 AGGGGGAGTATGCTGATTGTTATA 58.837 41.667 0.00 0.00 0.00 0.98
1634 2301 3.983410 AGGGGGAGTATGCTGATTGTTAT 59.017 43.478 0.00 0.00 0.00 1.89
1635 2302 3.391296 GAGGGGGAGTATGCTGATTGTTA 59.609 47.826 0.00 0.00 0.00 2.41
1636 2303 2.173569 GAGGGGGAGTATGCTGATTGTT 59.826 50.000 0.00 0.00 0.00 2.83
1637 2304 1.771255 GAGGGGGAGTATGCTGATTGT 59.229 52.381 0.00 0.00 0.00 2.71
1638 2305 1.770658 TGAGGGGGAGTATGCTGATTG 59.229 52.381 0.00 0.00 0.00 2.67
1639 2306 2.196742 TGAGGGGGAGTATGCTGATT 57.803 50.000 0.00 0.00 0.00 2.57
1640 2307 2.196742 TTGAGGGGGAGTATGCTGAT 57.803 50.000 0.00 0.00 0.00 2.90
1641 2308 2.050144 GATTGAGGGGGAGTATGCTGA 58.950 52.381 0.00 0.00 0.00 4.26
1642 2309 2.053244 AGATTGAGGGGGAGTATGCTG 58.947 52.381 0.00 0.00 0.00 4.41
1643 2310 2.053244 CAGATTGAGGGGGAGTATGCT 58.947 52.381 0.00 0.00 0.00 3.79
1644 2311 2.050144 TCAGATTGAGGGGGAGTATGC 58.950 52.381 0.00 0.00 0.00 3.14
1645 2312 4.989875 ATTCAGATTGAGGGGGAGTATG 57.010 45.455 0.00 0.00 0.00 2.39
1646 2313 5.674035 AGAAATTCAGATTGAGGGGGAGTAT 59.326 40.000 0.00 0.00 0.00 2.12
1647 2314 5.039645 AGAAATTCAGATTGAGGGGGAGTA 58.960 41.667 0.00 0.00 0.00 2.59
1666 2333 9.706691 CAATCTAAACCTTGTACAGAGTAGAAA 57.293 33.333 0.00 0.00 0.00 2.52
1857 2524 2.579873 GCCACATATCTGACTGCCAAT 58.420 47.619 0.00 0.00 0.00 3.16
1904 2571 1.592669 GTGTCTCAGCAGCGTGTGT 60.593 57.895 0.00 0.00 0.00 3.72
1905 2572 1.280886 GAGTGTCTCAGCAGCGTGTG 61.281 60.000 0.00 0.00 0.00 3.82
2169 2836 1.813178 TGAAAGGAACGTTGCACACAA 59.187 42.857 22.29 0.47 0.00 3.33
2205 2872 3.084786 GCTCATTGGGAAGCTGTTAAGT 58.915 45.455 0.00 0.00 0.00 2.24
2260 2927 5.066375 TCCGGATATTTCATTTGCAGTGAAG 59.934 40.000 0.00 4.89 36.96 3.02
2384 3051 1.045407 TCCACACCGCTGTCTACTTT 58.955 50.000 0.00 0.00 0.00 2.66
2413 3080 1.202110 CGTGTGAGCATGGAGAATTGC 60.202 52.381 0.00 0.00 39.17 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.