Multiple sequence alignment - TraesCS2D01G021600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G021600 chr2D 100.000 2992 0 0 859 3850 9900404 9903395 0.000000e+00 5526
1 TraesCS2D01G021600 chr2D 100.000 515 0 0 1 515 9899546 9900060 0.000000e+00 952
2 TraesCS2D01G021600 chr2A 94.277 2219 104 12 859 3060 9793427 9791215 0.000000e+00 3373
3 TraesCS2D01G021600 chr2A 94.229 2218 105 12 860 3060 9786460 9784249 0.000000e+00 3365
4 TraesCS2D01G021600 chr2A 93.963 2203 113 8 860 3047 9180254 9182451 0.000000e+00 3314
5 TraesCS2D01G021600 chr2A 96.250 240 8 1 276 515 9180040 9180278 3.610000e-105 392
6 TraesCS2D01G021600 chr2A 96.250 240 8 1 276 515 9793652 9793414 3.610000e-105 392
7 TraesCS2D01G021600 chr2A 95.082 244 10 2 1 243 9786892 9786650 2.170000e-102 383
8 TraesCS2D01G021600 chr2A 95.082 244 10 2 1 243 9793892 9793650 2.170000e-102 383
9 TraesCS2D01G021600 chr2A 94.262 244 12 2 1 243 9179800 9180042 4.700000e-99 372
10 TraesCS2D01G021600 chr2A 96.380 221 7 1 276 496 9786652 9786433 2.830000e-96 363
11 TraesCS2D01G021600 chr2A 78.222 225 43 6 2599 2820 27115997 27115776 5.190000e-29 139
12 TraesCS2D01G021600 chr2B 92.492 1998 131 13 970 2961 13401992 13403976 0.000000e+00 2841
13 TraesCS2D01G021600 chr2B 91.703 1157 91 5 2170 3323 13366413 13367567 0.000000e+00 1600
14 TraesCS2D01G021600 chr2B 95.828 719 29 1 859 1577 13364680 13365397 0.000000e+00 1160
15 TraesCS2D01G021600 chr2B 95.614 570 15 3 1569 2138 13365855 13366414 0.000000e+00 905
16 TraesCS2D01G021600 chr2B 95.112 491 18 5 26 515 13364218 13364703 0.000000e+00 769
17 TraesCS2D01G021600 chr2B 90.000 510 23 13 1 510 13401465 13401946 5.430000e-178 634
18 TraesCS2D01G021600 chr2B 81.138 334 58 3 3159 3489 461735296 461735627 2.950000e-66 263
19 TraesCS2D01G021600 chr2B 87.293 181 19 2 3397 3574 13367596 13367775 1.810000e-48 204
20 TraesCS2D01G021600 chr6D 85.246 183 24 3 3307 3489 463536715 463536894 6.570000e-43 185
21 TraesCS2D01G021600 chr4A 88.961 154 11 5 3340 3489 729715057 729714906 6.570000e-43 185
22 TraesCS2D01G021600 chr7A 77.273 198 35 7 3159 3350 603585755 603585948 1.460000e-19 108
23 TraesCS2D01G021600 chr1B 79.452 146 30 0 3159 3304 562209439 562209584 1.890000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G021600 chr2D 9899546 9903395 3849 False 3239.000000 5526 100.000000 1 3850 2 chr2D.!!$F1 3849
1 TraesCS2D01G021600 chr2A 9791215 9793892 2677 True 1382.666667 3373 95.203000 1 3060 3 chr2A.!!$R3 3059
2 TraesCS2D01G021600 chr2A 9784249 9786892 2643 True 1370.333333 3365 95.230333 1 3060 3 chr2A.!!$R2 3059
3 TraesCS2D01G021600 chr2A 9179800 9182451 2651 False 1359.333333 3314 94.825000 1 3047 3 chr2A.!!$F1 3046
4 TraesCS2D01G021600 chr2B 13401465 13403976 2511 False 1737.500000 2841 91.246000 1 2961 2 chr2B.!!$F3 2960
5 TraesCS2D01G021600 chr2B 13364218 13367775 3557 False 927.600000 1600 93.110000 26 3574 5 chr2B.!!$F2 3548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 276 0.037303 AGACCTCATGCAACCACCTG 59.963 55.000 0.00 0.00 0.00 4.00 F
1195 1284 0.621571 TCCTCTAATGGCAGCCCTGT 60.622 55.000 9.64 0.00 0.00 4.00 F
2325 2882 1.556451 AGTACATGACAGCTGCCATGA 59.444 47.619 39.12 24.09 41.88 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 2152 0.802494 CCACTACGCAAACCATGGAC 59.198 55.0 21.47 3.68 0.00 4.02 R
2542 3099 0.111061 AGGCATCTTGTTGCTGACCA 59.889 50.0 4.06 0.00 42.38 4.02 R
3655 4231 0.102120 CTGTTTCAAAACGCCCAGCA 59.898 50.0 1.52 0.00 41.74 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.678260 ACAAGAGCTATAGAAACATTTCTCATT 57.322 29.630 10.11 0.95 43.72 2.57
95 96 2.159014 AGTAGTTTGCGTCACACCAAGA 60.159 45.455 0.00 0.00 0.00 3.02
191 193 4.722361 TTAGTTTTGAACCGGCACTTTT 57.278 36.364 0.00 0.00 0.00 2.27
241 243 4.400251 ACGACTATTAAATGAGACCGGACA 59.600 41.667 9.46 5.76 0.00 4.02
242 244 5.105635 ACGACTATTAAATGAGACCGGACAA 60.106 40.000 9.46 0.00 0.00 3.18
243 245 5.808540 CGACTATTAAATGAGACCGGACAAA 59.191 40.000 9.46 0.00 0.00 2.83
244 246 6.479001 CGACTATTAAATGAGACCGGACAAAT 59.521 38.462 9.46 5.26 0.00 2.32
245 247 7.650504 CGACTATTAAATGAGACCGGACAAATA 59.349 37.037 9.46 6.08 0.00 1.40
246 248 9.490379 GACTATTAAATGAGACCGGACAAATAT 57.510 33.333 9.46 0.00 0.00 1.28
252 254 8.980481 AAATGAGACCGGACAAATATAATTCT 57.020 30.769 9.46 0.00 0.00 2.40
259 261 9.583765 GACCGGACAAATATAATTCTATAGACC 57.416 37.037 9.46 0.00 0.00 3.85
260 262 9.322769 ACCGGACAAATATAATTCTATAGACCT 57.677 33.333 9.46 0.00 0.00 3.85
261 263 9.804758 CCGGACAAATATAATTCTATAGACCTC 57.195 37.037 0.67 0.00 0.00 3.85
270 272 5.894298 ATTCTATAGACCTCATGCAACCA 57.106 39.130 0.67 0.00 0.00 3.67
271 273 4.672587 TCTATAGACCTCATGCAACCAC 57.327 45.455 0.00 0.00 0.00 4.16
272 274 2.717639 ATAGACCTCATGCAACCACC 57.282 50.000 0.00 0.00 0.00 4.61
273 275 1.656587 TAGACCTCATGCAACCACCT 58.343 50.000 0.00 0.00 0.00 4.00
274 276 0.037303 AGACCTCATGCAACCACCTG 59.963 55.000 0.00 0.00 0.00 4.00
275 277 1.589716 GACCTCATGCAACCACCTGC 61.590 60.000 0.00 0.00 42.95 4.85
320 355 1.774894 TAAAACGCCTGTCCTGCCCT 61.775 55.000 0.00 0.00 0.00 5.19
331 366 2.976882 TGTCCTGCCCTACAAGTAGTTT 59.023 45.455 6.50 0.00 0.00 2.66
392 427 3.549299 ATTCTTTTCAGCTTCAGTGCG 57.451 42.857 0.00 0.00 38.13 5.34
397 432 1.758440 TTCAGCTTCAGTGCGGGTCT 61.758 55.000 0.00 0.00 38.13 3.85
888 948 3.041211 TCCCTCTCTCTCTCTCTCTCAG 58.959 54.545 0.00 0.00 0.00 3.35
895 955 3.517500 TCTCTCTCTCTCTCAGCAGTACA 59.482 47.826 0.00 0.00 0.00 2.90
1084 1173 2.967599 TCTCACCACAATCATCTCCG 57.032 50.000 0.00 0.00 0.00 4.63
1131 1220 2.415168 TCATCTTACGCGCAAAGGAAAG 59.585 45.455 18.43 6.80 0.00 2.62
1138 1227 1.667724 CGCGCAAAGGAAAGAGATCAT 59.332 47.619 8.75 0.00 0.00 2.45
1195 1284 0.621571 TCCTCTAATGGCAGCCCTGT 60.622 55.000 9.64 0.00 0.00 4.00
1598 2152 2.670414 GAGGTTGCGAAGAGATGTTCAG 59.330 50.000 0.00 0.00 0.00 3.02
1893 2450 1.993369 GCTTGGCCACCTAATCGTGC 61.993 60.000 3.88 0.00 32.10 5.34
1941 2498 4.796946 GCAATGAGATCAAAGGCAACAACA 60.797 41.667 0.00 0.00 41.41 3.33
2138 2695 4.135306 GAGTCATGGACAGCAATGATGAT 58.865 43.478 5.17 0.00 35.38 2.45
2213 2770 2.382882 TCCATGACAGAGAGCGAGATT 58.617 47.619 0.00 0.00 0.00 2.40
2216 2773 3.519579 CATGACAGAGAGCGAGATTGTT 58.480 45.455 0.00 0.00 0.00 2.83
2325 2882 1.556451 AGTACATGACAGCTGCCATGA 59.444 47.619 39.12 24.09 41.88 3.07
2441 2998 2.832129 ACTGAGGCTTTATTCTCCGACA 59.168 45.455 0.00 0.00 0.00 4.35
2556 3113 2.637382 TCCATAGTGGTCAGCAACAAGA 59.363 45.455 0.00 0.00 39.03 3.02
2631 3188 1.978580 GGAGAGAGGAGGACAAAACCA 59.021 52.381 0.00 0.00 0.00 3.67
2753 3310 3.572682 TGAGGAACTTTGAGCTCGAGTTA 59.427 43.478 26.04 13.87 41.55 2.24
2820 3377 4.911390 ACCTAGAGGAAAAGTGATGGTTG 58.089 43.478 1.60 0.00 38.94 3.77
2853 3410 7.769044 GGAGAAGGTCAATAGTTAATTAGCACA 59.231 37.037 1.97 0.00 0.00 4.57
2876 3434 9.177304 CACACATGCATATGAAGTATGAATTTC 57.823 33.333 12.92 0.00 42.34 2.17
2910 3469 7.230510 ACTGTGTGTTGGTGTGTCATTTTATAT 59.769 33.333 0.00 0.00 0.00 0.86
2957 3524 4.134563 TGTGCTAGAAAAGGGAGAACAAC 58.865 43.478 0.00 0.00 0.00 3.32
3015 3585 5.050091 GTGTGTGAGTTAGAAATGTGGTCAG 60.050 44.000 0.00 0.00 0.00 3.51
3024 3594 5.755409 AGAAATGTGGTCAGGTGTGTATA 57.245 39.130 0.00 0.00 0.00 1.47
3031 3603 5.423931 TGTGGTCAGGTGTGTATATGTACAT 59.576 40.000 13.93 13.93 42.43 2.29
3034 3606 6.608002 TGGTCAGGTGTGTATATGTACATGTA 59.392 38.462 18.81 13.27 42.43 2.29
3065 3637 9.820229 TTATGCTTATTCTGTAAACAAAAGTCG 57.180 29.630 0.00 0.00 0.00 4.18
3069 3641 7.646526 GCTTATTCTGTAAACAAAAGTCGGTTT 59.353 33.333 0.00 0.00 40.15 3.27
3080 3652 4.514781 AAAGTCGGTTTTTATTGCCCTC 57.485 40.909 0.00 0.00 0.00 4.30
3140 3712 9.964354 TCAGCAATATAATACTCCATATGCTTT 57.036 29.630 0.00 0.00 0.00 3.51
3141 3713 9.999009 CAGCAATATAATACTCCATATGCTTTG 57.001 33.333 0.00 0.00 0.00 2.77
3142 3714 9.182214 AGCAATATAATACTCCATATGCTTTGG 57.818 33.333 0.00 0.00 35.45 3.28
3178 3751 3.623510 GGTTTGCAGGTAATCTACAGAGC 59.376 47.826 0.00 0.00 0.00 4.09
3185 3758 5.163499 GCAGGTAATCTACAGAGCAACTAGT 60.163 44.000 0.00 0.00 0.00 2.57
3191 3764 5.584253 TCTACAGAGCAACTAGTTGGATC 57.416 43.478 31.42 21.23 40.74 3.36
3192 3765 5.265191 TCTACAGAGCAACTAGTTGGATCT 58.735 41.667 31.42 22.76 40.74 2.75
3193 3766 4.199432 ACAGAGCAACTAGTTGGATCTG 57.801 45.455 30.33 30.33 40.74 2.90
3196 3769 5.105752 CAGAGCAACTAGTTGGATCTGTAC 58.894 45.833 31.42 15.44 40.74 2.90
3203 3776 2.244695 AGTTGGATCTGTACGTGGTCA 58.755 47.619 0.00 0.00 0.00 4.02
3205 3778 3.260884 AGTTGGATCTGTACGTGGTCATT 59.739 43.478 0.00 0.00 0.00 2.57
3213 3786 2.823747 TGTACGTGGTCATTACTCAGCT 59.176 45.455 0.00 0.00 0.00 4.24
3222 3795 2.093500 TCATTACTCAGCTGTGCGGAAT 60.093 45.455 14.67 9.07 31.77 3.01
3227 3800 0.674581 TCAGCTGTGCGGAATCCAAG 60.675 55.000 14.67 0.00 28.67 3.61
3230 3803 0.960364 GCTGTGCGGAATCCAAGGAA 60.960 55.000 0.00 0.00 0.00 3.36
3231 3804 0.804989 CTGTGCGGAATCCAAGGAAC 59.195 55.000 0.00 0.00 0.00 3.62
3236 3809 4.141597 TGTGCGGAATCCAAGGAACATATA 60.142 41.667 0.00 0.00 0.00 0.86
3252 3825 5.047566 ACATATAGCTTATGGGTGCAACA 57.952 39.130 3.06 0.00 39.98 3.33
3253 3826 5.445069 ACATATAGCTTATGGGTGCAACAA 58.555 37.500 3.06 0.00 39.98 2.83
3254 3827 6.070656 ACATATAGCTTATGGGTGCAACAAT 58.929 36.000 3.06 0.00 39.98 2.71
3264 3837 1.234821 GTGCAACAATTGGGAGACGA 58.765 50.000 10.83 0.00 36.32 4.20
3271 3844 2.236146 ACAATTGGGAGACGATAGCACA 59.764 45.455 10.83 0.00 42.67 4.57
3281 3854 5.416326 GGAGACGATAGCACAAGATACCTAT 59.584 44.000 0.00 0.00 42.67 2.57
3285 3858 7.666388 AGACGATAGCACAAGATACCTATAACT 59.334 37.037 0.00 0.00 42.67 2.24
3297 3870 8.437274 AGATACCTATAACTAGTTTGGATGGG 57.563 38.462 14.49 14.51 0.00 4.00
3301 3874 4.790718 ATAACTAGTTTGGATGGGGGTC 57.209 45.455 14.49 0.00 0.00 4.46
3316 3889 1.286248 GGGTCCAACAGGATAGGTGT 58.714 55.000 0.00 0.00 33.13 4.16
3320 3893 4.283722 GGGTCCAACAGGATAGGTGTATAG 59.716 50.000 0.00 0.00 33.13 1.31
3321 3894 4.283722 GGTCCAACAGGATAGGTGTATAGG 59.716 50.000 0.00 0.00 33.13 2.57
3322 3895 3.901844 TCCAACAGGATAGGTGTATAGGC 59.098 47.826 0.00 0.00 0.00 3.93
3323 3896 3.646162 CCAACAGGATAGGTGTATAGGCA 59.354 47.826 0.00 0.00 0.00 4.75
3324 3897 4.287067 CCAACAGGATAGGTGTATAGGCAT 59.713 45.833 0.00 0.00 0.00 4.40
3325 3898 5.482908 CAACAGGATAGGTGTATAGGCATC 58.517 45.833 0.00 0.00 0.00 3.91
3326 3899 5.017093 ACAGGATAGGTGTATAGGCATCT 57.983 43.478 0.00 0.00 33.83 2.90
3327 3900 5.407049 ACAGGATAGGTGTATAGGCATCTT 58.593 41.667 0.00 0.00 31.45 2.40
3328 3901 5.247110 ACAGGATAGGTGTATAGGCATCTTG 59.753 44.000 0.00 0.00 31.45 3.02
3329 3902 5.247110 CAGGATAGGTGTATAGGCATCTTGT 59.753 44.000 0.00 0.00 31.45 3.16
3330 3903 5.846714 AGGATAGGTGTATAGGCATCTTGTT 59.153 40.000 0.00 0.00 31.45 2.83
3331 3904 6.014156 AGGATAGGTGTATAGGCATCTTGTTC 60.014 42.308 0.00 0.00 31.45 3.18
3332 3905 6.014156 GGATAGGTGTATAGGCATCTTGTTCT 60.014 42.308 0.00 0.00 31.45 3.01
3333 3906 5.700402 AGGTGTATAGGCATCTTGTTCTT 57.300 39.130 0.00 0.00 0.00 2.52
3334 3907 6.067217 AGGTGTATAGGCATCTTGTTCTTT 57.933 37.500 0.00 0.00 0.00 2.52
3335 3908 6.485171 AGGTGTATAGGCATCTTGTTCTTTT 58.515 36.000 0.00 0.00 0.00 2.27
3336 3909 6.948309 AGGTGTATAGGCATCTTGTTCTTTTT 59.052 34.615 0.00 0.00 0.00 1.94
3362 3935 1.264288 CGGTTGTGGCTTTGAGTTCTC 59.736 52.381 0.00 0.00 0.00 2.87
3380 3953 8.314751 TGAGTTCTCCCTTTACTTTATCTCTTG 58.685 37.037 0.00 0.00 0.00 3.02
3381 3954 8.437274 AGTTCTCCCTTTACTTTATCTCTTGA 57.563 34.615 0.00 0.00 0.00 3.02
3382 3955 9.052365 AGTTCTCCCTTTACTTTATCTCTTGAT 57.948 33.333 0.00 0.00 36.74 2.57
3383 3956 9.103861 GTTCTCCCTTTACTTTATCTCTTGATG 57.896 37.037 0.00 0.00 34.32 3.07
3384 3957 8.609617 TCTCCCTTTACTTTATCTCTTGATGA 57.390 34.615 0.00 0.00 34.32 2.92
3385 3958 8.700051 TCTCCCTTTACTTTATCTCTTGATGAG 58.300 37.037 0.00 0.00 43.96 2.90
3386 3959 8.380742 TCCCTTTACTTTATCTCTTGATGAGT 57.619 34.615 0.00 0.00 43.13 3.41
3387 3960 8.826765 TCCCTTTACTTTATCTCTTGATGAGTT 58.173 33.333 0.00 0.00 43.13 3.01
3388 3961 9.454859 CCCTTTACTTTATCTCTTGATGAGTTT 57.545 33.333 0.00 0.00 43.13 2.66
3440 4013 5.581126 TTTGGTTAATAAGATGGCTGCAG 57.419 39.130 10.11 10.11 0.00 4.41
3451 4024 1.214589 GGCTGCAGGCATCACTTTG 59.785 57.895 33.31 0.00 44.01 2.77
3461 4034 2.846039 CATCACTTTGATGCAGAGGC 57.154 50.000 3.30 0.00 46.37 4.70
3462 4035 2.366533 CATCACTTTGATGCAGAGGCT 58.633 47.619 3.30 0.00 46.37 4.58
3463 4036 1.817357 TCACTTTGATGCAGAGGCTG 58.183 50.000 0.00 0.00 41.91 4.85
3515 4091 9.145865 GGTTTTGTTAAGACAAGATTTTGACAA 57.854 29.630 2.48 0.02 45.80 3.18
3519 4095 9.698309 TTGTTAAGACAAGATTTTGACAAACAA 57.302 25.926 18.24 18.24 40.71 2.83
3562 4138 9.806448 AACATATGTGATATAAAGCCATAACCA 57.194 29.630 9.63 0.00 0.00 3.67
3563 4139 9.231297 ACATATGTGATATAAAGCCATAACCAC 57.769 33.333 7.78 0.00 0.00 4.16
3564 4140 9.230122 CATATGTGATATAAAGCCATAACCACA 57.770 33.333 0.00 0.00 0.00 4.17
3590 4166 7.554959 AAAAGTACTCTGAGAGGTAAATCCA 57.445 36.000 14.83 0.00 39.02 3.41
3591 4167 7.554959 AAAGTACTCTGAGAGGTAAATCCAA 57.445 36.000 14.83 0.00 39.02 3.53
3592 4168 7.741554 AAGTACTCTGAGAGGTAAATCCAAT 57.258 36.000 14.83 0.00 39.02 3.16
3593 4169 7.118496 AGTACTCTGAGAGGTAAATCCAATG 57.882 40.000 14.83 0.00 39.02 2.82
3594 4170 6.897966 AGTACTCTGAGAGGTAAATCCAATGA 59.102 38.462 14.83 0.00 39.02 2.57
3595 4171 5.983540 ACTCTGAGAGGTAAATCCAATGAC 58.016 41.667 14.83 0.00 39.02 3.06
3596 4172 5.485353 ACTCTGAGAGGTAAATCCAATGACA 59.515 40.000 14.83 0.00 39.02 3.58
3597 4173 6.157645 ACTCTGAGAGGTAAATCCAATGACAT 59.842 38.462 14.83 0.00 39.02 3.06
3598 4174 6.586344 TCTGAGAGGTAAATCCAATGACATC 58.414 40.000 0.00 0.00 39.02 3.06
3599 4175 5.359756 TGAGAGGTAAATCCAATGACATCG 58.640 41.667 0.00 0.00 39.02 3.84
3600 4176 5.128663 TGAGAGGTAAATCCAATGACATCGA 59.871 40.000 0.00 0.00 39.02 3.59
3601 4177 5.605534 AGAGGTAAATCCAATGACATCGAG 58.394 41.667 0.00 0.00 39.02 4.04
3602 4178 5.129485 AGAGGTAAATCCAATGACATCGAGT 59.871 40.000 0.00 0.00 39.02 4.18
3603 4179 5.745227 AGGTAAATCCAATGACATCGAGTT 58.255 37.500 0.00 0.00 39.02 3.01
3604 4180 5.817816 AGGTAAATCCAATGACATCGAGTTC 59.182 40.000 0.00 0.00 39.02 3.01
3605 4181 5.584649 GGTAAATCCAATGACATCGAGTTCA 59.415 40.000 1.49 1.49 35.97 3.18
3606 4182 6.260936 GGTAAATCCAATGACATCGAGTTCAT 59.739 38.462 5.85 5.85 35.97 2.57
3607 4183 5.746307 AATCCAATGACATCGAGTTCATG 57.254 39.130 11.29 6.82 0.00 3.07
3608 4184 4.206477 TCCAATGACATCGAGTTCATGT 57.794 40.909 11.29 0.42 37.18 3.21
3609 4185 4.578871 TCCAATGACATCGAGTTCATGTT 58.421 39.130 11.29 0.00 34.49 2.71
3610 4186 5.729510 TCCAATGACATCGAGTTCATGTTA 58.270 37.500 11.29 0.00 34.49 2.41
3611 4187 5.580691 TCCAATGACATCGAGTTCATGTTAC 59.419 40.000 11.29 0.00 34.49 2.50
3612 4188 5.351189 CCAATGACATCGAGTTCATGTTACA 59.649 40.000 11.29 0.00 34.49 2.41
3613 4189 6.037500 CCAATGACATCGAGTTCATGTTACAT 59.962 38.462 11.29 0.00 34.49 2.29
3614 4190 7.224557 CCAATGACATCGAGTTCATGTTACATA 59.775 37.037 11.29 0.00 34.49 2.29
3615 4191 8.603181 CAATGACATCGAGTTCATGTTACATAA 58.397 33.333 11.29 0.00 34.49 1.90
3616 4192 8.716646 ATGACATCGAGTTCATGTTACATAAA 57.283 30.769 10.06 0.00 34.49 1.40
3617 4193 8.541133 TGACATCGAGTTCATGTTACATAAAA 57.459 30.769 0.00 0.00 34.49 1.52
3618 4194 8.994170 TGACATCGAGTTCATGTTACATAAAAA 58.006 29.630 0.00 0.00 34.49 1.94
3619 4195 9.988350 GACATCGAGTTCATGTTACATAAAAAT 57.012 29.630 0.00 0.00 34.49 1.82
3650 4226 9.901172 ATTATTAGAATCGTCCTAACAAAACCT 57.099 29.630 0.00 0.00 0.00 3.50
3651 4227 9.729281 TTATTAGAATCGTCCTAACAAAACCTT 57.271 29.630 0.00 0.00 0.00 3.50
3653 4229 9.901172 ATTAGAATCGTCCTAACAAAACCTTAT 57.099 29.630 0.00 0.00 0.00 1.73
3656 4232 9.326413 AGAATCGTCCTAACAAAACCTTATATG 57.674 33.333 0.00 0.00 0.00 1.78
3657 4233 6.913873 TCGTCCTAACAAAACCTTATATGC 57.086 37.500 0.00 0.00 0.00 3.14
3658 4234 6.646267 TCGTCCTAACAAAACCTTATATGCT 58.354 36.000 0.00 0.00 0.00 3.79
3659 4235 6.537301 TCGTCCTAACAAAACCTTATATGCTG 59.463 38.462 0.00 0.00 0.00 4.41
3660 4236 6.238374 CGTCCTAACAAAACCTTATATGCTGG 60.238 42.308 0.00 0.00 0.00 4.85
3661 4237 6.039382 GTCCTAACAAAACCTTATATGCTGGG 59.961 42.308 0.00 0.00 0.00 4.45
3662 4238 4.736126 AACAAAACCTTATATGCTGGGC 57.264 40.909 0.00 0.00 0.00 5.36
3663 4239 2.687935 ACAAAACCTTATATGCTGGGCG 59.312 45.455 0.00 0.00 0.00 6.13
3664 4240 2.687935 CAAAACCTTATATGCTGGGCGT 59.312 45.455 0.00 0.00 0.00 5.68
3665 4241 2.729028 AACCTTATATGCTGGGCGTT 57.271 45.000 0.00 0.00 0.00 4.84
3666 4242 2.729028 ACCTTATATGCTGGGCGTTT 57.271 45.000 0.00 0.00 0.00 3.60
3667 4243 3.012934 ACCTTATATGCTGGGCGTTTT 57.987 42.857 0.00 0.00 0.00 2.43
3668 4244 2.687935 ACCTTATATGCTGGGCGTTTTG 59.312 45.455 0.00 0.00 0.00 2.44
3669 4245 2.948979 CCTTATATGCTGGGCGTTTTGA 59.051 45.455 0.00 0.00 0.00 2.69
3670 4246 3.380004 CCTTATATGCTGGGCGTTTTGAA 59.620 43.478 0.00 0.00 0.00 2.69
3671 4247 4.142271 CCTTATATGCTGGGCGTTTTGAAA 60.142 41.667 0.00 0.00 0.00 2.69
3672 4248 2.715737 TATGCTGGGCGTTTTGAAAC 57.284 45.000 0.00 0.00 35.59 2.78
3673 4249 0.749649 ATGCTGGGCGTTTTGAAACA 59.250 45.000 7.32 0.00 38.81 2.83
3674 4250 0.102120 TGCTGGGCGTTTTGAAACAG 59.898 50.000 7.32 0.00 38.81 3.16
3675 4251 0.383949 GCTGGGCGTTTTGAAACAGA 59.616 50.000 7.32 0.00 38.81 3.41
3676 4252 1.202359 GCTGGGCGTTTTGAAACAGAA 60.202 47.619 7.32 0.00 38.81 3.02
3677 4253 2.731217 CTGGGCGTTTTGAAACAGAAG 58.269 47.619 7.32 0.00 38.81 2.85
3678 4254 1.407258 TGGGCGTTTTGAAACAGAAGG 59.593 47.619 7.32 0.00 38.81 3.46
3679 4255 1.487482 GGCGTTTTGAAACAGAAGGC 58.513 50.000 7.32 9.89 38.18 4.35
3680 4256 1.120437 GCGTTTTGAAACAGAAGGCG 58.880 50.000 7.32 0.00 38.81 5.52
3681 4257 1.533129 GCGTTTTGAAACAGAAGGCGT 60.533 47.619 7.32 0.00 38.81 5.68
3682 4258 2.286536 GCGTTTTGAAACAGAAGGCGTA 60.287 45.455 7.32 0.00 38.81 4.42
3683 4259 3.789459 GCGTTTTGAAACAGAAGGCGTAA 60.789 43.478 7.32 0.00 38.81 3.18
3684 4260 4.533222 CGTTTTGAAACAGAAGGCGTAAT 58.467 39.130 7.32 0.00 38.81 1.89
3685 4261 4.378616 CGTTTTGAAACAGAAGGCGTAATG 59.621 41.667 7.32 0.00 38.81 1.90
3686 4262 5.278604 GTTTTGAAACAGAAGGCGTAATGT 58.721 37.500 1.90 0.00 38.74 2.71
3687 4263 5.508200 TTTGAAACAGAAGGCGTAATGTT 57.492 34.783 3.96 3.96 37.47 2.71
3688 4264 4.742438 TGAAACAGAAGGCGTAATGTTC 57.258 40.909 8.93 5.13 34.92 3.18
3689 4265 4.130857 TGAAACAGAAGGCGTAATGTTCA 58.869 39.130 8.93 6.97 34.92 3.18
3690 4266 4.576873 TGAAACAGAAGGCGTAATGTTCAA 59.423 37.500 8.93 0.60 34.92 2.69
3691 4267 5.066634 TGAAACAGAAGGCGTAATGTTCAAA 59.933 36.000 8.93 0.00 34.92 2.69
3692 4268 5.508200 AACAGAAGGCGTAATGTTCAAAA 57.492 34.783 3.96 0.00 30.25 2.44
3693 4269 5.705609 ACAGAAGGCGTAATGTTCAAAAT 57.294 34.783 0.00 0.00 0.00 1.82
3694 4270 6.084326 ACAGAAGGCGTAATGTTCAAAATT 57.916 33.333 0.00 0.00 0.00 1.82
3695 4271 7.209471 ACAGAAGGCGTAATGTTCAAAATTA 57.791 32.000 0.00 0.00 0.00 1.40
3696 4272 7.826690 ACAGAAGGCGTAATGTTCAAAATTAT 58.173 30.769 0.00 0.00 0.00 1.28
3697 4273 8.952278 ACAGAAGGCGTAATGTTCAAAATTATA 58.048 29.630 0.00 0.00 0.00 0.98
3698 4274 9.950680 CAGAAGGCGTAATGTTCAAAATTATAT 57.049 29.630 0.00 0.00 0.00 0.86
3700 4276 9.394477 GAAGGCGTAATGTTCAAAATTATATCC 57.606 33.333 0.00 0.00 0.00 2.59
3701 4277 8.691661 AGGCGTAATGTTCAAAATTATATCCT 57.308 30.769 0.00 0.00 0.00 3.24
3702 4278 9.787435 AGGCGTAATGTTCAAAATTATATCCTA 57.213 29.630 0.00 0.00 0.00 2.94
3721 4297 9.990868 ATATCCTAATTAAAGTTTCCCAGTGTT 57.009 29.630 0.00 0.00 0.00 3.32
3722 4298 8.721133 ATCCTAATTAAAGTTTCCCAGTGTTT 57.279 30.769 0.00 0.00 0.00 2.83
3723 4299 8.173542 TCCTAATTAAAGTTTCCCAGTGTTTC 57.826 34.615 0.00 0.00 0.00 2.78
3724 4300 7.780745 TCCTAATTAAAGTTTCCCAGTGTTTCA 59.219 33.333 0.00 0.00 0.00 2.69
3725 4301 8.082242 CCTAATTAAAGTTTCCCAGTGTTTCAG 58.918 37.037 0.00 0.00 0.00 3.02
3726 4302 7.418337 AATTAAAGTTTCCCAGTGTTTCAGT 57.582 32.000 0.00 0.00 0.00 3.41
3727 4303 6.844097 TTAAAGTTTCCCAGTGTTTCAGTT 57.156 33.333 0.00 0.00 0.00 3.16
3728 4304 4.983671 AAGTTTCCCAGTGTTTCAGTTC 57.016 40.909 0.00 0.00 0.00 3.01
3729 4305 4.236527 AGTTTCCCAGTGTTTCAGTTCT 57.763 40.909 0.00 0.00 0.00 3.01
3730 4306 5.367945 AGTTTCCCAGTGTTTCAGTTCTA 57.632 39.130 0.00 0.00 0.00 2.10
3731 4307 5.751586 AGTTTCCCAGTGTTTCAGTTCTAA 58.248 37.500 0.00 0.00 0.00 2.10
3732 4308 6.365520 AGTTTCCCAGTGTTTCAGTTCTAAT 58.634 36.000 0.00 0.00 0.00 1.73
3733 4309 7.514721 AGTTTCCCAGTGTTTCAGTTCTAATA 58.485 34.615 0.00 0.00 0.00 0.98
3734 4310 7.996644 AGTTTCCCAGTGTTTCAGTTCTAATAA 59.003 33.333 0.00 0.00 0.00 1.40
3735 4311 7.739498 TTCCCAGTGTTTCAGTTCTAATAAC 57.261 36.000 0.00 0.00 0.00 1.89
3736 4312 7.074653 TCCCAGTGTTTCAGTTCTAATAACT 57.925 36.000 0.00 0.00 0.00 2.24
3737 4313 7.514721 TCCCAGTGTTTCAGTTCTAATAACTT 58.485 34.615 0.00 0.00 0.00 2.66
3738 4314 7.660208 TCCCAGTGTTTCAGTTCTAATAACTTC 59.340 37.037 0.00 0.00 0.00 3.01
3739 4315 7.094762 CCCAGTGTTTCAGTTCTAATAACTTCC 60.095 40.741 0.00 0.00 0.00 3.46
3740 4316 7.444183 CCAGTGTTTCAGTTCTAATAACTTCCA 59.556 37.037 0.00 0.00 0.00 3.53
3741 4317 8.499162 CAGTGTTTCAGTTCTAATAACTTCCAG 58.501 37.037 0.00 0.00 0.00 3.86
3742 4318 7.661847 AGTGTTTCAGTTCTAATAACTTCCAGG 59.338 37.037 0.00 0.00 0.00 4.45
3743 4319 7.444487 GTGTTTCAGTTCTAATAACTTCCAGGT 59.556 37.037 0.00 0.00 0.00 4.00
3744 4320 7.996644 TGTTTCAGTTCTAATAACTTCCAGGTT 59.003 33.333 0.00 0.00 0.00 3.50
3745 4321 9.498176 GTTTCAGTTCTAATAACTTCCAGGTTA 57.502 33.333 0.00 0.00 36.33 2.85
3773 4349 5.745312 AAAAATTGCTAGCCCTTTAAGCT 57.255 34.783 13.29 0.00 44.49 3.74
3774 4350 6.850752 AAAAATTGCTAGCCCTTTAAGCTA 57.149 33.333 13.29 0.00 41.83 3.32
3783 4359 5.443230 AGCCCTTTAAGCTAGAACAGATT 57.557 39.130 0.00 0.00 39.29 2.40
3784 4360 6.561519 AGCCCTTTAAGCTAGAACAGATTA 57.438 37.500 0.00 0.00 39.29 1.75
3785 4361 7.142995 AGCCCTTTAAGCTAGAACAGATTAT 57.857 36.000 0.00 0.00 39.29 1.28
3786 4362 6.995091 AGCCCTTTAAGCTAGAACAGATTATG 59.005 38.462 0.00 0.00 39.29 1.90
3787 4363 6.293680 GCCCTTTAAGCTAGAACAGATTATGC 60.294 42.308 0.00 0.00 35.15 3.14
3788 4364 6.767902 CCCTTTAAGCTAGAACAGATTATGCA 59.232 38.462 0.00 0.00 35.15 3.96
3789 4365 7.041508 CCCTTTAAGCTAGAACAGATTATGCAG 60.042 40.741 0.00 0.00 35.15 4.41
3790 4366 6.851222 TTAAGCTAGAACAGATTATGCAGC 57.149 37.500 0.00 0.00 35.15 5.25
3791 4367 4.412796 AGCTAGAACAGATTATGCAGCA 57.587 40.909 0.00 0.00 0.00 4.41
3792 4368 4.378774 AGCTAGAACAGATTATGCAGCAG 58.621 43.478 0.00 0.00 0.00 4.24
3793 4369 4.125703 GCTAGAACAGATTATGCAGCAGT 58.874 43.478 0.00 0.00 0.00 4.40
3794 4370 5.069648 AGCTAGAACAGATTATGCAGCAGTA 59.930 40.000 0.00 0.00 0.00 2.74
3795 4371 5.755375 GCTAGAACAGATTATGCAGCAGTAA 59.245 40.000 0.00 0.62 0.00 2.24
3796 4372 6.426328 GCTAGAACAGATTATGCAGCAGTAAT 59.574 38.462 0.00 5.60 0.00 1.89
3797 4373 6.857777 AGAACAGATTATGCAGCAGTAATC 57.142 37.500 19.67 19.67 37.50 1.75
3798 4374 6.590068 AGAACAGATTATGCAGCAGTAATCT 58.410 36.000 22.05 22.05 44.38 2.40
3799 4375 7.052873 AGAACAGATTATGCAGCAGTAATCTT 58.947 34.615 23.68 16.58 42.17 2.40
3800 4376 6.857777 ACAGATTATGCAGCAGTAATCTTC 57.142 37.500 23.68 10.41 42.17 2.87
3801 4377 6.351711 ACAGATTATGCAGCAGTAATCTTCA 58.648 36.000 23.68 0.00 42.17 3.02
3802 4378 6.825213 ACAGATTATGCAGCAGTAATCTTCAA 59.175 34.615 23.68 3.12 42.17 2.69
3803 4379 7.012138 ACAGATTATGCAGCAGTAATCTTCAAG 59.988 37.037 23.68 18.42 42.17 3.02
3804 4380 7.012138 CAGATTATGCAGCAGTAATCTTCAAGT 59.988 37.037 23.68 10.40 42.17 3.16
3805 4381 4.959596 ATGCAGCAGTAATCTTCAAGTG 57.040 40.909 0.00 0.00 0.00 3.16
3806 4382 4.006780 TGCAGCAGTAATCTTCAAGTGA 57.993 40.909 0.00 0.00 0.00 3.41
3807 4383 3.999001 TGCAGCAGTAATCTTCAAGTGAG 59.001 43.478 0.00 0.00 0.00 3.51
3808 4384 3.181512 GCAGCAGTAATCTTCAAGTGAGC 60.182 47.826 0.00 0.00 0.00 4.26
3809 4385 3.373439 CAGCAGTAATCTTCAAGTGAGCC 59.627 47.826 0.00 0.00 0.00 4.70
3810 4386 3.008375 AGCAGTAATCTTCAAGTGAGCCA 59.992 43.478 0.00 0.00 0.00 4.75
3811 4387 3.753272 GCAGTAATCTTCAAGTGAGCCAA 59.247 43.478 0.00 0.00 0.00 4.52
3812 4388 4.142730 GCAGTAATCTTCAAGTGAGCCAAG 60.143 45.833 0.00 0.00 0.00 3.61
3813 4389 5.240891 CAGTAATCTTCAAGTGAGCCAAGA 58.759 41.667 0.00 0.00 0.00 3.02
3814 4390 5.350914 CAGTAATCTTCAAGTGAGCCAAGAG 59.649 44.000 0.00 0.00 0.00 2.85
3815 4391 4.363991 AATCTTCAAGTGAGCCAAGAGT 57.636 40.909 0.00 0.00 0.00 3.24
3816 4392 3.845781 TCTTCAAGTGAGCCAAGAGTT 57.154 42.857 0.00 0.00 0.00 3.01
3817 4393 3.470709 TCTTCAAGTGAGCCAAGAGTTG 58.529 45.455 0.00 0.00 0.00 3.16
3818 4394 1.597742 TCAAGTGAGCCAAGAGTTGC 58.402 50.000 0.00 0.00 0.00 4.17
3819 4395 1.134128 TCAAGTGAGCCAAGAGTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
3820 4396 1.884579 CAAGTGAGCCAAGAGTTGCAT 59.115 47.619 0.00 0.00 0.00 3.96
3821 4397 1.531423 AGTGAGCCAAGAGTTGCATG 58.469 50.000 0.00 0.00 0.00 4.06
3822 4398 0.109412 GTGAGCCAAGAGTTGCATGC 60.109 55.000 11.82 11.82 0.00 4.06
3823 4399 0.251033 TGAGCCAAGAGTTGCATGCT 60.251 50.000 20.33 0.00 0.00 3.79
3824 4400 0.170561 GAGCCAAGAGTTGCATGCTG 59.829 55.000 20.33 7.34 0.00 4.41
3825 4401 0.538977 AGCCAAGAGTTGCATGCTGT 60.539 50.000 20.33 2.66 0.00 4.40
3826 4402 1.167851 GCCAAGAGTTGCATGCTGTA 58.832 50.000 20.33 1.11 0.00 2.74
3827 4403 1.131883 GCCAAGAGTTGCATGCTGTAG 59.868 52.381 20.33 2.37 0.00 2.74
3828 4404 1.131883 CCAAGAGTTGCATGCTGTAGC 59.868 52.381 20.33 0.16 42.50 3.58
3829 4405 2.082231 CAAGAGTTGCATGCTGTAGCT 58.918 47.619 20.33 5.86 42.66 3.32
3830 4406 1.735386 AGAGTTGCATGCTGTAGCTG 58.265 50.000 20.33 2.74 42.66 4.24
3831 4407 1.002888 AGAGTTGCATGCTGTAGCTGT 59.997 47.619 20.33 1.50 42.66 4.40
3832 4408 1.129998 GAGTTGCATGCTGTAGCTGTG 59.870 52.381 20.33 5.61 42.66 3.66
3833 4409 0.169672 GTTGCATGCTGTAGCTGTGG 59.830 55.000 20.33 0.00 42.66 4.17
3834 4410 1.588824 TTGCATGCTGTAGCTGTGGC 61.589 55.000 20.33 0.00 42.66 5.01
3835 4411 2.768492 GCATGCTGTAGCTGTGGCC 61.768 63.158 11.37 0.00 42.66 5.36
3836 4412 2.117156 CATGCTGTAGCTGTGGCCC 61.117 63.158 0.00 0.00 42.66 5.80
3837 4413 2.304056 ATGCTGTAGCTGTGGCCCT 61.304 57.895 0.00 0.00 42.66 5.19
3838 4414 2.437359 GCTGTAGCTGTGGCCCTG 60.437 66.667 0.00 0.00 39.73 4.45
3839 4415 2.270205 CTGTAGCTGTGGCCCTGG 59.730 66.667 0.00 0.00 39.73 4.45
3840 4416 3.984193 CTGTAGCTGTGGCCCTGGC 62.984 68.421 0.00 0.00 39.73 4.85
3841 4417 3.721706 GTAGCTGTGGCCCTGGCT 61.722 66.667 15.77 15.77 41.60 4.75
3842 4418 3.720601 TAGCTGTGGCCCTGGCTG 61.721 66.667 19.29 5.31 41.60 4.85
3845 4421 4.753662 CTGTGGCCCTGGCTGCAT 62.754 66.667 8.29 0.00 41.60 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.319136 TGGTGTGACGCAAACTACTT 57.681 45.000 0.00 0.00 0.00 2.24
95 96 7.148590 GCACGAAGGAAGAAAAATGCAATTAAT 60.149 33.333 0.00 0.00 33.67 1.40
191 193 6.043854 TGCACCATATTGTTGACTACTACA 57.956 37.500 0.00 0.00 0.00 2.74
244 246 9.100197 TGGTTGCATGAGGTCTATAGAATTATA 57.900 33.333 3.40 0.00 0.00 0.98
245 247 7.880195 GTGGTTGCATGAGGTCTATAGAATTAT 59.120 37.037 3.40 0.00 0.00 1.28
246 248 7.217200 GTGGTTGCATGAGGTCTATAGAATTA 58.783 38.462 3.40 0.00 0.00 1.40
247 249 6.058183 GTGGTTGCATGAGGTCTATAGAATT 58.942 40.000 3.40 0.00 0.00 2.17
248 250 5.455326 GGTGGTTGCATGAGGTCTATAGAAT 60.455 44.000 3.40 0.00 0.00 2.40
249 251 4.141711 GGTGGTTGCATGAGGTCTATAGAA 60.142 45.833 3.40 0.00 0.00 2.10
250 252 3.388024 GGTGGTTGCATGAGGTCTATAGA 59.612 47.826 0.00 0.00 0.00 1.98
251 253 3.389329 AGGTGGTTGCATGAGGTCTATAG 59.611 47.826 0.00 0.00 0.00 1.31
252 254 3.134623 CAGGTGGTTGCATGAGGTCTATA 59.865 47.826 0.00 0.00 0.00 1.31
253 255 2.092753 CAGGTGGTTGCATGAGGTCTAT 60.093 50.000 0.00 0.00 0.00 1.98
254 256 1.278985 CAGGTGGTTGCATGAGGTCTA 59.721 52.381 0.00 0.00 0.00 2.59
255 257 0.037303 CAGGTGGTTGCATGAGGTCT 59.963 55.000 0.00 0.00 0.00 3.85
256 258 1.589716 GCAGGTGGTTGCATGAGGTC 61.590 60.000 0.00 0.00 43.53 3.85
257 259 1.604593 GCAGGTGGTTGCATGAGGT 60.605 57.895 0.00 0.00 43.53 3.85
258 260 3.281240 GCAGGTGGTTGCATGAGG 58.719 61.111 0.00 0.00 43.53 3.86
264 266 0.031178 CTTGACTTGCAGGTGGTTGC 59.969 55.000 6.05 0.00 44.33 4.17
265 267 1.679139 TCTTGACTTGCAGGTGGTTG 58.321 50.000 6.05 0.00 0.00 3.77
266 268 2.427095 GTTTCTTGACTTGCAGGTGGTT 59.573 45.455 6.05 0.00 0.00 3.67
267 269 2.024414 GTTTCTTGACTTGCAGGTGGT 58.976 47.619 6.05 0.00 0.00 4.16
268 270 1.338020 GGTTTCTTGACTTGCAGGTGG 59.662 52.381 6.05 0.00 0.00 4.61
269 271 2.291741 GAGGTTTCTTGACTTGCAGGTG 59.708 50.000 6.05 0.00 0.00 4.00
270 272 2.576615 GAGGTTTCTTGACTTGCAGGT 58.423 47.619 0.00 0.00 0.00 4.00
271 273 1.532868 CGAGGTTTCTTGACTTGCAGG 59.467 52.381 0.00 0.00 0.00 4.85
272 274 1.532868 CCGAGGTTTCTTGACTTGCAG 59.467 52.381 0.00 0.00 0.00 4.41
273 275 1.134220 ACCGAGGTTTCTTGACTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
274 276 1.264288 CACCGAGGTTTCTTGACTTGC 59.736 52.381 0.00 0.00 0.00 4.01
275 277 1.264288 GCACCGAGGTTTCTTGACTTG 59.736 52.381 0.00 0.00 0.00 3.16
320 355 6.939730 TGGATGCATGAGAAAAACTACTTGTA 59.060 34.615 2.46 0.00 0.00 2.41
331 366 1.634973 TGGAGGTGGATGCATGAGAAA 59.365 47.619 2.46 0.00 0.00 2.52
392 427 4.652822 ACAATTAACCAGAGACAAGACCC 58.347 43.478 0.00 0.00 0.00 4.46
397 432 6.833041 TCCTACAACAATTAACCAGAGACAA 58.167 36.000 0.00 0.00 0.00 3.18
858 918 0.998945 AGAGAGAGGGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
859 919 0.996762 GAGAGAGAGGGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
860 920 0.998945 AGAGAGAGAGGGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
861 921 0.996762 GAGAGAGAGAGGGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
862 922 0.998945 AGAGAGAGAGAGGGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
863 923 0.478507 GAGAGAGAGAGAGGGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
864 924 1.421646 GAGAGAGAGAGAGAGGGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
865 925 2.370189 GAGAGAGAGAGAGAGAGGGAGG 59.630 59.091 0.00 0.00 0.00 4.30
866 926 3.041211 TGAGAGAGAGAGAGAGAGGGAG 58.959 54.545 0.00 0.00 0.00 4.30
867 927 3.041211 CTGAGAGAGAGAGAGAGAGGGA 58.959 54.545 0.00 0.00 0.00 4.20
868 928 2.486191 GCTGAGAGAGAGAGAGAGAGGG 60.486 59.091 0.00 0.00 0.00 4.30
869 929 2.171237 TGCTGAGAGAGAGAGAGAGAGG 59.829 54.545 0.00 0.00 0.00 3.69
870 930 3.118482 ACTGCTGAGAGAGAGAGAGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
871 931 2.840038 ACTGCTGAGAGAGAGAGAGAGA 59.160 50.000 0.00 0.00 0.00 3.10
1010 1099 3.254166 GTGTATTGTGATCCCATCCATGC 59.746 47.826 0.00 0.00 0.00 4.06
1084 1173 5.356190 TGGTTCTGATTCTTGCAATGATCTC 59.644 40.000 17.79 10.52 0.00 2.75
1131 1220 3.431572 GGCGCAGAGTAATTGATGATCTC 59.568 47.826 10.83 0.00 0.00 2.75
1138 1227 1.813753 GCGGGCGCAGAGTAATTGA 60.814 57.895 10.83 0.00 41.49 2.57
1501 1590 2.241176 TCCACACCAAACAGAACTCCTT 59.759 45.455 0.00 0.00 0.00 3.36
1598 2152 0.802494 CCACTACGCAAACCATGGAC 59.198 55.000 21.47 3.68 0.00 4.02
1941 2498 2.494073 GGAGTCTCGACACTTCTTCCAT 59.506 50.000 0.00 0.00 0.00 3.41
2138 2695 1.565156 GCAACACATCGCCTTCGTCA 61.565 55.000 0.00 0.00 36.96 4.35
2213 2770 3.264574 GGCAATGAGTAGCCCAACA 57.735 52.632 0.00 0.00 45.18 3.33
2325 2882 6.015688 TGCTCAATGATTTTCTTCTGCTCTTT 60.016 34.615 0.00 0.00 0.00 2.52
2394 2951 0.521291 TTGATACAGCAACGCAAGGC 59.479 50.000 0.00 0.00 46.39 4.35
2542 3099 0.111061 AGGCATCTTGTTGCTGACCA 59.889 50.000 4.06 0.00 42.38 4.02
2576 3133 3.244078 GGCACGGATCATACACATTAGGA 60.244 47.826 0.00 0.00 0.00 2.94
2604 3161 2.695597 CTCCTCTCTCCCCAGGCT 59.304 66.667 0.00 0.00 0.00 4.58
2631 3188 4.702131 GGATATGTCTGAAAACTTGCCACT 59.298 41.667 0.00 0.00 0.00 4.00
2753 3310 2.844369 AGCTCAGGGAAAGGAGAGATT 58.156 47.619 0.00 0.00 32.87 2.40
2820 3377 5.346181 ACTATTGACCTTCTCCTGTAAGC 57.654 43.478 0.00 0.00 0.00 3.09
2876 3434 4.024893 CACACCAACACACAGTTAGCTTAG 60.025 45.833 0.00 0.00 38.74 2.18
2957 3524 4.627467 GGCGAGGTATTTCACATATGCTAG 59.373 45.833 1.58 0.00 0.00 3.42
3015 3585 8.712285 AACTTGTACATGTACATATACACACC 57.288 34.615 33.24 7.08 44.11 4.16
3060 3632 2.823747 GGAGGGCAATAAAAACCGACTT 59.176 45.455 0.00 0.00 0.00 3.01
3140 3712 6.019656 TGCAAACCTAATACCCATATTCCA 57.980 37.500 0.00 0.00 32.98 3.53
3141 3713 5.476945 CCTGCAAACCTAATACCCATATTCC 59.523 44.000 0.00 0.00 32.98 3.01
3142 3714 6.068670 ACCTGCAAACCTAATACCCATATTC 58.931 40.000 0.00 0.00 32.98 1.75
3149 3721 7.277396 TGTAGATTACCTGCAAACCTAATACC 58.723 38.462 0.00 0.00 34.50 2.73
3178 3751 4.174009 CCACGTACAGATCCAACTAGTTG 58.826 47.826 25.79 25.79 40.13 3.16
3185 3758 3.973206 AATGACCACGTACAGATCCAA 57.027 42.857 0.00 0.00 0.00 3.53
3191 3764 3.119459 AGCTGAGTAATGACCACGTACAG 60.119 47.826 0.00 0.00 0.00 2.74
3192 3765 2.823747 AGCTGAGTAATGACCACGTACA 59.176 45.455 0.00 0.00 0.00 2.90
3193 3766 3.179830 CAGCTGAGTAATGACCACGTAC 58.820 50.000 8.42 0.00 0.00 3.67
3196 3769 1.995484 CACAGCTGAGTAATGACCACG 59.005 52.381 23.35 0.00 0.00 4.94
3203 3776 2.555199 GATTCCGCACAGCTGAGTAAT 58.445 47.619 23.35 13.54 0.00 1.89
3205 3778 0.175760 GGATTCCGCACAGCTGAGTA 59.824 55.000 23.35 0.00 0.00 2.59
3213 3786 0.109532 TGTTCCTTGGATTCCGCACA 59.890 50.000 0.00 0.00 0.00 4.57
3222 3795 5.610982 ACCCATAAGCTATATGTTCCTTGGA 59.389 40.000 12.12 0.00 0.00 3.53
3227 3800 4.651778 TGCACCCATAAGCTATATGTTCC 58.348 43.478 12.12 2.99 0.00 3.62
3230 3803 5.047566 TGTTGCACCCATAAGCTATATGT 57.952 39.130 12.12 0.00 0.00 2.29
3231 3804 6.579666 ATTGTTGCACCCATAAGCTATATG 57.420 37.500 0.00 0.00 0.00 1.78
3236 3809 2.234414 CCAATTGTTGCACCCATAAGCT 59.766 45.455 4.43 0.00 0.00 3.74
3252 3825 3.197766 TCTTGTGCTATCGTCTCCCAATT 59.802 43.478 0.00 0.00 0.00 2.32
3253 3826 2.766263 TCTTGTGCTATCGTCTCCCAAT 59.234 45.455 0.00 0.00 0.00 3.16
3254 3827 2.176045 TCTTGTGCTATCGTCTCCCAA 58.824 47.619 0.00 0.00 0.00 4.12
3271 3844 8.881262 CCCATCCAAACTAGTTATAGGTATCTT 58.119 37.037 8.92 0.00 32.90 2.40
3281 3854 2.848071 GGACCCCCATCCAAACTAGTTA 59.152 50.000 8.92 0.00 38.77 2.24
3285 3858 3.522999 TGGACCCCCATCCAAACTA 57.477 52.632 0.00 0.00 46.08 2.24
3297 3870 1.286248 ACACCTATCCTGTTGGACCC 58.714 55.000 0.00 0.00 46.51 4.46
3301 3874 3.646162 TGCCTATACACCTATCCTGTTGG 59.354 47.826 0.00 0.00 0.00 3.77
3305 3878 5.247110 ACAAGATGCCTATACACCTATCCTG 59.753 44.000 0.00 0.00 0.00 3.86
3307 3880 5.746990 ACAAGATGCCTATACACCTATCC 57.253 43.478 0.00 0.00 0.00 2.59
3341 3914 0.310854 GAACTCAAAGCCACAACCGG 59.689 55.000 0.00 0.00 0.00 5.28
3342 3915 1.264288 GAGAACTCAAAGCCACAACCG 59.736 52.381 0.00 0.00 0.00 4.44
3343 3916 1.609072 GGAGAACTCAAAGCCACAACC 59.391 52.381 4.23 0.00 0.00 3.77
3344 3917 1.609072 GGGAGAACTCAAAGCCACAAC 59.391 52.381 4.23 0.00 0.00 3.32
3345 3918 1.494721 AGGGAGAACTCAAAGCCACAA 59.505 47.619 4.23 0.00 0.00 3.33
3346 3919 1.140312 AGGGAGAACTCAAAGCCACA 58.860 50.000 4.23 0.00 0.00 4.17
3347 3920 2.278332 AAGGGAGAACTCAAAGCCAC 57.722 50.000 4.23 0.00 0.00 5.01
3409 3982 8.424133 GCCATCTTATTAACCAAAAGATCCAAT 58.576 33.333 0.00 0.00 37.76 3.16
3446 4019 1.339824 CCTCAGCCTCTGCATCAAAGT 60.340 52.381 0.00 0.00 41.13 2.66
3451 4024 3.598299 GATTATCCTCAGCCTCTGCATC 58.402 50.000 0.00 0.00 41.13 3.91
3569 4145 6.897966 TCATTGGATTTACCTCTCAGAGTACT 59.102 38.462 0.00 0.00 39.86 2.73
3570 4146 6.981559 GTCATTGGATTTACCTCTCAGAGTAC 59.018 42.308 0.00 0.00 39.86 2.73
3571 4147 6.667848 TGTCATTGGATTTACCTCTCAGAGTA 59.332 38.462 0.00 0.00 39.86 2.59
3572 4148 5.485353 TGTCATTGGATTTACCTCTCAGAGT 59.515 40.000 0.00 0.00 39.86 3.24
3573 4149 5.982356 TGTCATTGGATTTACCTCTCAGAG 58.018 41.667 0.00 0.00 39.86 3.35
3574 4150 6.566079 ATGTCATTGGATTTACCTCTCAGA 57.434 37.500 0.00 0.00 39.86 3.27
3575 4151 5.464722 CGATGTCATTGGATTTACCTCTCAG 59.535 44.000 0.00 0.00 39.86 3.35
3576 4152 5.128663 TCGATGTCATTGGATTTACCTCTCA 59.871 40.000 0.00 0.00 39.86 3.27
3577 4153 5.601662 TCGATGTCATTGGATTTACCTCTC 58.398 41.667 0.00 0.00 39.86 3.20
3578 4154 5.129485 ACTCGATGTCATTGGATTTACCTCT 59.871 40.000 0.00 0.00 39.86 3.69
3579 4155 5.360591 ACTCGATGTCATTGGATTTACCTC 58.639 41.667 0.00 0.00 39.86 3.85
3580 4156 5.359194 ACTCGATGTCATTGGATTTACCT 57.641 39.130 0.00 0.00 39.86 3.08
3581 4157 5.584649 TGAACTCGATGTCATTGGATTTACC 59.415 40.000 0.00 0.00 39.54 2.85
3582 4158 6.662414 TGAACTCGATGTCATTGGATTTAC 57.338 37.500 0.00 0.00 0.00 2.01
3583 4159 6.823182 ACATGAACTCGATGTCATTGGATTTA 59.177 34.615 0.00 0.00 27.16 1.40
3584 4160 5.649395 ACATGAACTCGATGTCATTGGATTT 59.351 36.000 0.00 0.00 27.16 2.17
3585 4161 5.188434 ACATGAACTCGATGTCATTGGATT 58.812 37.500 0.00 0.00 27.16 3.01
3586 4162 4.774124 ACATGAACTCGATGTCATTGGAT 58.226 39.130 0.00 0.00 27.16 3.41
3587 4163 4.206477 ACATGAACTCGATGTCATTGGA 57.794 40.909 0.00 0.00 27.16 3.53
3588 4164 4.952262 AACATGAACTCGATGTCATTGG 57.048 40.909 0.00 2.53 32.74 3.16
3589 4165 6.407475 TGTAACATGAACTCGATGTCATTG 57.593 37.500 0.00 7.09 32.74 2.82
3590 4166 8.716646 TTATGTAACATGAACTCGATGTCATT 57.283 30.769 0.00 0.57 32.74 2.57
3591 4167 8.716646 TTTATGTAACATGAACTCGATGTCAT 57.283 30.769 0.00 5.39 32.74 3.06
3592 4168 8.541133 TTTTATGTAACATGAACTCGATGTCA 57.459 30.769 0.00 1.09 32.74 3.58
3593 4169 9.988350 ATTTTTATGTAACATGAACTCGATGTC 57.012 29.630 0.00 0.00 32.74 3.06
3624 4200 9.901172 AGGTTTTGTTAGGACGATTCTAATAAT 57.099 29.630 0.00 0.00 31.34 1.28
3625 4201 9.729281 AAGGTTTTGTTAGGACGATTCTAATAA 57.271 29.630 0.00 0.00 0.00 1.40
3627 4203 9.901172 ATAAGGTTTTGTTAGGACGATTCTAAT 57.099 29.630 0.00 0.00 0.00 1.73
3630 4206 9.326413 CATATAAGGTTTTGTTAGGACGATTCT 57.674 33.333 0.00 0.00 0.00 2.40
3631 4207 8.068380 GCATATAAGGTTTTGTTAGGACGATTC 58.932 37.037 0.00 0.00 0.00 2.52
3632 4208 7.773690 AGCATATAAGGTTTTGTTAGGACGATT 59.226 33.333 0.00 0.00 0.00 3.34
3633 4209 7.226720 CAGCATATAAGGTTTTGTTAGGACGAT 59.773 37.037 0.00 0.00 0.00 3.73
3634 4210 6.537301 CAGCATATAAGGTTTTGTTAGGACGA 59.463 38.462 0.00 0.00 0.00 4.20
3635 4211 6.238374 CCAGCATATAAGGTTTTGTTAGGACG 60.238 42.308 0.00 0.00 0.00 4.79
3636 4212 6.039382 CCCAGCATATAAGGTTTTGTTAGGAC 59.961 42.308 0.00 0.00 0.00 3.85
3637 4213 6.126409 CCCAGCATATAAGGTTTTGTTAGGA 58.874 40.000 0.00 0.00 0.00 2.94
3638 4214 5.221244 GCCCAGCATATAAGGTTTTGTTAGG 60.221 44.000 0.00 0.00 0.00 2.69
3639 4215 5.505654 CGCCCAGCATATAAGGTTTTGTTAG 60.506 44.000 0.00 0.00 0.00 2.34
3640 4216 4.336993 CGCCCAGCATATAAGGTTTTGTTA 59.663 41.667 0.00 0.00 0.00 2.41
3641 4217 3.130340 CGCCCAGCATATAAGGTTTTGTT 59.870 43.478 0.00 0.00 0.00 2.83
3642 4218 2.687935 CGCCCAGCATATAAGGTTTTGT 59.312 45.455 0.00 0.00 0.00 2.83
3643 4219 2.687935 ACGCCCAGCATATAAGGTTTTG 59.312 45.455 0.00 0.00 0.00 2.44
3644 4220 3.012934 ACGCCCAGCATATAAGGTTTT 57.987 42.857 0.00 0.00 0.00 2.43
3645 4221 2.729028 ACGCCCAGCATATAAGGTTT 57.271 45.000 0.00 0.00 0.00 3.27
3646 4222 2.729028 AACGCCCAGCATATAAGGTT 57.271 45.000 0.00 0.00 0.00 3.50
3647 4223 2.687935 CAAAACGCCCAGCATATAAGGT 59.312 45.455 0.00 0.00 0.00 3.50
3648 4224 2.948979 TCAAAACGCCCAGCATATAAGG 59.051 45.455 0.00 0.00 0.00 2.69
3649 4225 4.630894 TTCAAAACGCCCAGCATATAAG 57.369 40.909 0.00 0.00 0.00 1.73
3650 4226 4.218635 TGTTTCAAAACGCCCAGCATATAA 59.781 37.500 1.52 0.00 41.74 0.98
3651 4227 3.759086 TGTTTCAAAACGCCCAGCATATA 59.241 39.130 1.52 0.00 41.74 0.86
3652 4228 2.560542 TGTTTCAAAACGCCCAGCATAT 59.439 40.909 1.52 0.00 41.74 1.78
3653 4229 1.957177 TGTTTCAAAACGCCCAGCATA 59.043 42.857 1.52 0.00 41.74 3.14
3654 4230 0.749649 TGTTTCAAAACGCCCAGCAT 59.250 45.000 1.52 0.00 41.74 3.79
3655 4231 0.102120 CTGTTTCAAAACGCCCAGCA 59.898 50.000 1.52 0.00 41.74 4.41
3656 4232 0.383949 TCTGTTTCAAAACGCCCAGC 59.616 50.000 1.52 0.00 41.74 4.85
3657 4233 2.543653 CCTTCTGTTTCAAAACGCCCAG 60.544 50.000 1.52 0.00 41.74 4.45
3658 4234 1.407258 CCTTCTGTTTCAAAACGCCCA 59.593 47.619 1.52 0.00 41.74 5.36
3659 4235 1.868109 GCCTTCTGTTTCAAAACGCCC 60.868 52.381 1.52 0.00 41.74 6.13
3660 4236 1.487482 GCCTTCTGTTTCAAAACGCC 58.513 50.000 1.52 0.00 41.74 5.68
3661 4237 1.120437 CGCCTTCTGTTTCAAAACGC 58.880 50.000 1.52 0.00 41.74 4.84
3662 4238 2.468532 ACGCCTTCTGTTTCAAAACG 57.531 45.000 1.52 0.00 41.74 3.60
3663 4239 5.278604 ACATTACGCCTTCTGTTTCAAAAC 58.721 37.500 0.00 0.00 39.33 2.43
3664 4240 5.508200 ACATTACGCCTTCTGTTTCAAAA 57.492 34.783 0.00 0.00 0.00 2.44
3665 4241 5.066634 TGAACATTACGCCTTCTGTTTCAAA 59.933 36.000 0.00 0.00 32.28 2.69
3666 4242 4.576873 TGAACATTACGCCTTCTGTTTCAA 59.423 37.500 0.00 0.00 32.28 2.69
3667 4243 4.130857 TGAACATTACGCCTTCTGTTTCA 58.869 39.130 0.00 0.00 32.28 2.69
3668 4244 4.742438 TGAACATTACGCCTTCTGTTTC 57.258 40.909 0.00 0.00 32.28 2.78
3669 4245 5.508200 TTTGAACATTACGCCTTCTGTTT 57.492 34.783 0.00 0.00 32.28 2.83
3670 4246 5.508200 TTTTGAACATTACGCCTTCTGTT 57.492 34.783 0.00 0.00 34.68 3.16
3671 4247 5.705609 ATTTTGAACATTACGCCTTCTGT 57.294 34.783 0.00 0.00 0.00 3.41
3672 4248 9.950680 ATATAATTTTGAACATTACGCCTTCTG 57.049 29.630 0.00 0.00 0.00 3.02
3674 4250 9.394477 GGATATAATTTTGAACATTACGCCTTC 57.606 33.333 0.00 0.00 0.00 3.46
3675 4251 9.131791 AGGATATAATTTTGAACATTACGCCTT 57.868 29.630 0.00 0.00 0.00 4.35
3676 4252 8.691661 AGGATATAATTTTGAACATTACGCCT 57.308 30.769 0.00 0.00 0.00 5.52
3695 4271 9.990868 AACACTGGGAAACTTTAATTAGGATAT 57.009 29.630 0.00 0.00 0.00 1.63
3696 4272 9.816787 AAACACTGGGAAACTTTAATTAGGATA 57.183 29.630 0.00 0.00 0.00 2.59
3697 4273 8.721133 AAACACTGGGAAACTTTAATTAGGAT 57.279 30.769 0.00 0.00 0.00 3.24
3698 4274 7.780745 TGAAACACTGGGAAACTTTAATTAGGA 59.219 33.333 0.00 0.00 0.00 2.94
3699 4275 7.947282 TGAAACACTGGGAAACTTTAATTAGG 58.053 34.615 0.00 0.00 0.00 2.69
3700 4276 8.630037 ACTGAAACACTGGGAAACTTTAATTAG 58.370 33.333 0.00 0.00 0.00 1.73
3701 4277 8.528044 ACTGAAACACTGGGAAACTTTAATTA 57.472 30.769 0.00 0.00 0.00 1.40
3702 4278 7.418337 ACTGAAACACTGGGAAACTTTAATT 57.582 32.000 0.00 0.00 0.00 1.40
3703 4279 7.342026 AGAACTGAAACACTGGGAAACTTTAAT 59.658 33.333 0.00 0.00 0.00 1.40
3704 4280 6.661805 AGAACTGAAACACTGGGAAACTTTAA 59.338 34.615 0.00 0.00 0.00 1.52
3705 4281 6.184789 AGAACTGAAACACTGGGAAACTTTA 58.815 36.000 0.00 0.00 0.00 1.85
3706 4282 5.016831 AGAACTGAAACACTGGGAAACTTT 58.983 37.500 0.00 0.00 0.00 2.66
3707 4283 4.600062 AGAACTGAAACACTGGGAAACTT 58.400 39.130 0.00 0.00 0.00 2.66
3708 4284 4.236527 AGAACTGAAACACTGGGAAACT 57.763 40.909 0.00 0.00 0.00 2.66
3709 4285 6.635030 ATTAGAACTGAAACACTGGGAAAC 57.365 37.500 0.00 0.00 0.00 2.78
3710 4286 7.996644 AGTTATTAGAACTGAAACACTGGGAAA 59.003 33.333 0.00 0.00 0.00 3.13
3711 4287 7.514721 AGTTATTAGAACTGAAACACTGGGAA 58.485 34.615 0.00 0.00 0.00 3.97
3712 4288 7.074653 AGTTATTAGAACTGAAACACTGGGA 57.925 36.000 0.00 0.00 0.00 4.37
3713 4289 7.094762 GGAAGTTATTAGAACTGAAACACTGGG 60.095 40.741 0.00 0.00 0.00 4.45
3714 4290 7.444183 TGGAAGTTATTAGAACTGAAACACTGG 59.556 37.037 0.00 0.00 0.00 4.00
3715 4291 8.378172 TGGAAGTTATTAGAACTGAAACACTG 57.622 34.615 0.00 0.00 0.00 3.66
3716 4292 7.661847 CCTGGAAGTTATTAGAACTGAAACACT 59.338 37.037 0.00 0.00 0.00 3.55
3717 4293 7.444487 ACCTGGAAGTTATTAGAACTGAAACAC 59.556 37.037 0.00 0.00 0.00 3.32
3718 4294 7.514721 ACCTGGAAGTTATTAGAACTGAAACA 58.485 34.615 0.00 0.00 0.00 2.83
3719 4295 7.981102 ACCTGGAAGTTATTAGAACTGAAAC 57.019 36.000 0.00 0.00 0.00 2.78
3751 4327 5.745312 AGCTTAAAGGGCTAGCAATTTTT 57.255 34.783 18.24 12.56 38.36 1.94
3760 4336 6.561519 AATCTGTTCTAGCTTAAAGGGCTA 57.438 37.500 0.00 0.00 40.74 3.93
3761 4337 5.443230 AATCTGTTCTAGCTTAAAGGGCT 57.557 39.130 0.00 0.00 43.02 5.19
3762 4338 6.293680 GCATAATCTGTTCTAGCTTAAAGGGC 60.294 42.308 0.00 0.00 0.00 5.19
3763 4339 6.767902 TGCATAATCTGTTCTAGCTTAAAGGG 59.232 38.462 0.00 0.00 0.00 3.95
3764 4340 7.519649 GCTGCATAATCTGTTCTAGCTTAAAGG 60.520 40.741 0.00 0.00 0.00 3.11
3765 4341 7.011763 TGCTGCATAATCTGTTCTAGCTTAAAG 59.988 37.037 0.00 0.00 0.00 1.85
3766 4342 6.823182 TGCTGCATAATCTGTTCTAGCTTAAA 59.177 34.615 0.00 0.00 0.00 1.52
3767 4343 6.348498 TGCTGCATAATCTGTTCTAGCTTAA 58.652 36.000 0.00 0.00 0.00 1.85
3768 4344 5.917462 TGCTGCATAATCTGTTCTAGCTTA 58.083 37.500 0.00 0.00 0.00 3.09
3769 4345 4.774124 TGCTGCATAATCTGTTCTAGCTT 58.226 39.130 0.00 0.00 0.00 3.74
3770 4346 4.141756 ACTGCTGCATAATCTGTTCTAGCT 60.142 41.667 1.31 0.00 0.00 3.32
3771 4347 4.125703 ACTGCTGCATAATCTGTTCTAGC 58.874 43.478 1.31 0.00 0.00 3.42
3772 4348 7.871973 AGATTACTGCTGCATAATCTGTTCTAG 59.128 37.037 27.41 9.57 43.39 2.43
3773 4349 7.730084 AGATTACTGCTGCATAATCTGTTCTA 58.270 34.615 27.41 7.36 43.39 2.10
3774 4350 6.590068 AGATTACTGCTGCATAATCTGTTCT 58.410 36.000 27.41 15.58 43.39 3.01
3775 4351 6.857777 AGATTACTGCTGCATAATCTGTTC 57.142 37.500 27.41 14.34 43.39 3.18
3776 4352 6.825213 TGAAGATTACTGCTGCATAATCTGTT 59.175 34.615 28.01 20.68 43.95 3.16
3777 4353 6.351711 TGAAGATTACTGCTGCATAATCTGT 58.648 36.000 28.01 22.08 43.95 3.41
3778 4354 6.856135 TGAAGATTACTGCTGCATAATCTG 57.144 37.500 28.01 12.80 43.95 2.90
3779 4355 7.012138 CACTTGAAGATTACTGCTGCATAATCT 59.988 37.037 25.08 25.08 45.74 2.40
3780 4356 7.011763 TCACTTGAAGATTACTGCTGCATAATC 59.988 37.037 22.89 22.89 37.85 1.75
3781 4357 6.825213 TCACTTGAAGATTACTGCTGCATAAT 59.175 34.615 1.31 9.55 0.00 1.28
3782 4358 6.172630 TCACTTGAAGATTACTGCTGCATAA 58.827 36.000 1.31 4.99 0.00 1.90
3783 4359 5.733676 TCACTTGAAGATTACTGCTGCATA 58.266 37.500 1.31 0.00 0.00 3.14
3784 4360 4.582869 TCACTTGAAGATTACTGCTGCAT 58.417 39.130 1.31 0.00 0.00 3.96
3785 4361 3.999001 CTCACTTGAAGATTACTGCTGCA 59.001 43.478 0.88 0.88 0.00 4.41
3786 4362 3.181512 GCTCACTTGAAGATTACTGCTGC 60.182 47.826 0.00 0.00 0.00 5.25
3787 4363 3.373439 GGCTCACTTGAAGATTACTGCTG 59.627 47.826 0.00 0.00 0.00 4.41
3788 4364 3.008375 TGGCTCACTTGAAGATTACTGCT 59.992 43.478 0.00 0.00 0.00 4.24
3789 4365 3.338249 TGGCTCACTTGAAGATTACTGC 58.662 45.455 0.00 0.00 0.00 4.40
3790 4366 5.240891 TCTTGGCTCACTTGAAGATTACTG 58.759 41.667 0.00 0.00 0.00 2.74
3791 4367 5.012561 ACTCTTGGCTCACTTGAAGATTACT 59.987 40.000 0.00 0.00 0.00 2.24
3792 4368 5.241662 ACTCTTGGCTCACTTGAAGATTAC 58.758 41.667 0.00 0.00 0.00 1.89
3793 4369 5.489792 ACTCTTGGCTCACTTGAAGATTA 57.510 39.130 0.00 0.00 0.00 1.75
3794 4370 4.363991 ACTCTTGGCTCACTTGAAGATT 57.636 40.909 0.00 0.00 0.00 2.40
3795 4371 4.070716 CAACTCTTGGCTCACTTGAAGAT 58.929 43.478 0.00 0.00 0.00 2.40
3796 4372 3.470709 CAACTCTTGGCTCACTTGAAGA 58.529 45.455 0.00 0.00 0.00 2.87
3797 4373 2.031333 GCAACTCTTGGCTCACTTGAAG 60.031 50.000 0.00 0.00 0.00 3.02
3798 4374 1.949525 GCAACTCTTGGCTCACTTGAA 59.050 47.619 0.00 0.00 0.00 2.69
3799 4375 1.134128 TGCAACTCTTGGCTCACTTGA 60.134 47.619 0.00 0.00 0.00 3.02
3800 4376 1.311859 TGCAACTCTTGGCTCACTTG 58.688 50.000 0.00 0.00 0.00 3.16
3801 4377 1.884579 CATGCAACTCTTGGCTCACTT 59.115 47.619 0.00 0.00 0.00 3.16
3802 4378 1.531423 CATGCAACTCTTGGCTCACT 58.469 50.000 0.00 0.00 0.00 3.41
3803 4379 0.109412 GCATGCAACTCTTGGCTCAC 60.109 55.000 14.21 0.00 0.00 3.51
3804 4380 0.251033 AGCATGCAACTCTTGGCTCA 60.251 50.000 21.98 0.00 0.00 4.26
3805 4381 0.170561 CAGCATGCAACTCTTGGCTC 59.829 55.000 21.98 0.00 0.00 4.70
3806 4382 0.538977 ACAGCATGCAACTCTTGGCT 60.539 50.000 21.98 0.00 42.53 4.75
3807 4383 1.131883 CTACAGCATGCAACTCTTGGC 59.868 52.381 21.98 0.00 42.53 4.52
3808 4384 1.131883 GCTACAGCATGCAACTCTTGG 59.868 52.381 21.98 2.56 42.53 3.61
3809 4385 2.082231 AGCTACAGCATGCAACTCTTG 58.918 47.619 21.98 10.71 42.53 3.02
3810 4386 2.082231 CAGCTACAGCATGCAACTCTT 58.918 47.619 21.98 0.00 42.53 2.85
3811 4387 1.002888 ACAGCTACAGCATGCAACTCT 59.997 47.619 21.98 7.06 42.53 3.24
3812 4388 1.129998 CACAGCTACAGCATGCAACTC 59.870 52.381 21.98 4.68 42.53 3.01
3813 4389 1.162698 CACAGCTACAGCATGCAACT 58.837 50.000 21.98 6.30 42.53 3.16
3814 4390 0.169672 CCACAGCTACAGCATGCAAC 59.830 55.000 21.98 3.85 42.53 4.17
3815 4391 1.588824 GCCACAGCTACAGCATGCAA 61.589 55.000 21.98 3.70 45.16 4.08
3816 4392 2.042259 GCCACAGCTACAGCATGCA 61.042 57.895 21.98 0.00 45.16 3.96
3817 4393 2.768492 GGCCACAGCTACAGCATGC 61.768 63.158 10.51 10.51 45.16 4.06
3818 4394 2.117156 GGGCCACAGCTACAGCATG 61.117 63.158 4.39 1.52 45.16 4.06
3819 4395 2.273449 GGGCCACAGCTACAGCAT 59.727 61.111 4.39 0.00 45.16 3.79
3820 4396 2.930019 AGGGCCACAGCTACAGCA 60.930 61.111 6.18 0.00 45.16 4.41
3821 4397 2.437359 CAGGGCCACAGCTACAGC 60.437 66.667 6.18 0.00 39.73 4.40
3822 4398 2.270205 CCAGGGCCACAGCTACAG 59.730 66.667 6.18 0.00 39.73 2.74
3823 4399 4.033776 GCCAGGGCCACAGCTACA 62.034 66.667 6.18 0.00 39.73 2.74
3824 4400 3.721706 AGCCAGGGCCACAGCTAC 61.722 66.667 12.60 0.00 43.17 3.58
3825 4401 3.720601 CAGCCAGGGCCACAGCTA 61.721 66.667 13.66 0.00 43.17 3.32
3828 4404 4.753662 ATGCAGCCAGGGCCACAG 62.754 66.667 6.18 0.00 43.17 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.