Multiple sequence alignment - TraesCS2D01G020800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G020800 chr2D 100.000 2195 0 0 1 2195 9784294 9786488 0.000000e+00 4054
1 TraesCS2D01G020800 chr2D 93.351 752 50 0 1 752 628011012 628010261 0.000000e+00 1112
2 TraesCS2D01G020800 chr2D 92.420 752 57 0 1 752 490744420 490745171 0.000000e+00 1074
3 TraesCS2D01G020800 chr5D 97.533 1459 16 7 751 2192 503287200 503288655 0.000000e+00 2477
4 TraesCS2D01G020800 chr5D 96.982 1458 18 9 751 2195 6181046 6179602 0.000000e+00 2425
5 TraesCS2D01G020800 chr5D 96.972 1453 25 9 751 2192 120799771 120801215 0.000000e+00 2422
6 TraesCS2D01G020800 chr5D 95.748 1458 36 13 751 2195 167071834 167073278 0.000000e+00 2326
7 TraesCS2D01G020800 chr5D 97.832 1107 9 5 1102 2195 512409297 512408193 0.000000e+00 1897
8 TraesCS2D01G020800 chr5D 97.746 1109 8 5 1102 2195 512416234 512415128 0.000000e+00 1893
9 TraesCS2D01G020800 chr6D 97.457 1455 14 8 751 2191 45511671 45510226 0.000000e+00 2460
10 TraesCS2D01G020800 chr1D 97.043 1454 25 8 751 2192 51878173 51876726 0.000000e+00 2431
11 TraesCS2D01G020800 chr1D 97.111 1454 15 8 751 2192 254416965 254418403 0.000000e+00 2427
12 TraesCS2D01G020800 chr1D 92.553 752 55 1 1 752 306624167 306623417 0.000000e+00 1077
13 TraesCS2D01G020800 chr1A 96.781 1460 18 8 751 2195 554458367 554459812 0.000000e+00 2409
14 TraesCS2D01G020800 chr5A 95.402 1457 34 12 751 2195 607200190 607198755 0.000000e+00 2289
15 TraesCS2D01G020800 chr2A 96.303 1190 17 8 1012 2188 334595896 334594721 0.000000e+00 1929
16 TraesCS2D01G020800 chr2A 97.082 891 12 5 751 1630 335830728 335829841 0.000000e+00 1489
17 TraesCS2D01G020800 chr2A 92.165 753 58 1 1 752 758521338 758520586 0.000000e+00 1062
18 TraesCS2D01G020800 chr4A 95.486 997 32 3 751 1737 310730700 310729707 0.000000e+00 1580
19 TraesCS2D01G020800 chr7D 97.154 773 6 5 1424 2183 77241816 77242585 0.000000e+00 1291
20 TraesCS2D01G020800 chr3D 98.875 622 5 2 1572 2193 571593360 571593979 0.000000e+00 1109
21 TraesCS2D01G020800 chr2B 90.093 646 63 1 1 646 575182465 575183109 0.000000e+00 837
22 TraesCS2D01G020800 chr2B 89.926 407 41 0 346 752 771153899 771153493 1.930000e-145 525
23 TraesCS2D01G020800 chr5B 90.083 121 9 3 2 119 661219928 661220048 1.050000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G020800 chr2D 9784294 9786488 2194 False 4054 4054 100.000 1 2195 1 chr2D.!!$F1 2194
1 TraesCS2D01G020800 chr2D 628010261 628011012 751 True 1112 1112 93.351 1 752 1 chr2D.!!$R1 751
2 TraesCS2D01G020800 chr2D 490744420 490745171 751 False 1074 1074 92.420 1 752 1 chr2D.!!$F2 751
3 TraesCS2D01G020800 chr5D 503287200 503288655 1455 False 2477 2477 97.533 751 2192 1 chr5D.!!$F3 1441
4 TraesCS2D01G020800 chr5D 6179602 6181046 1444 True 2425 2425 96.982 751 2195 1 chr5D.!!$R1 1444
5 TraesCS2D01G020800 chr5D 120799771 120801215 1444 False 2422 2422 96.972 751 2192 1 chr5D.!!$F1 1441
6 TraesCS2D01G020800 chr5D 167071834 167073278 1444 False 2326 2326 95.748 751 2195 1 chr5D.!!$F2 1444
7 TraesCS2D01G020800 chr5D 512408193 512409297 1104 True 1897 1897 97.832 1102 2195 1 chr5D.!!$R2 1093
8 TraesCS2D01G020800 chr5D 512415128 512416234 1106 True 1893 1893 97.746 1102 2195 1 chr5D.!!$R3 1093
9 TraesCS2D01G020800 chr6D 45510226 45511671 1445 True 2460 2460 97.457 751 2191 1 chr6D.!!$R1 1440
10 TraesCS2D01G020800 chr1D 51876726 51878173 1447 True 2431 2431 97.043 751 2192 1 chr1D.!!$R1 1441
11 TraesCS2D01G020800 chr1D 254416965 254418403 1438 False 2427 2427 97.111 751 2192 1 chr1D.!!$F1 1441
12 TraesCS2D01G020800 chr1D 306623417 306624167 750 True 1077 1077 92.553 1 752 1 chr1D.!!$R2 751
13 TraesCS2D01G020800 chr1A 554458367 554459812 1445 False 2409 2409 96.781 751 2195 1 chr1A.!!$F1 1444
14 TraesCS2D01G020800 chr5A 607198755 607200190 1435 True 2289 2289 95.402 751 2195 1 chr5A.!!$R1 1444
15 TraesCS2D01G020800 chr2A 334594721 334595896 1175 True 1929 1929 96.303 1012 2188 1 chr2A.!!$R1 1176
16 TraesCS2D01G020800 chr2A 335829841 335830728 887 True 1489 1489 97.082 751 1630 1 chr2A.!!$R2 879
17 TraesCS2D01G020800 chr2A 758520586 758521338 752 True 1062 1062 92.165 1 752 1 chr2A.!!$R3 751
18 TraesCS2D01G020800 chr4A 310729707 310730700 993 True 1580 1580 95.486 751 1737 1 chr4A.!!$R1 986
19 TraesCS2D01G020800 chr7D 77241816 77242585 769 False 1291 1291 97.154 1424 2183 1 chr7D.!!$F1 759
20 TraesCS2D01G020800 chr3D 571593360 571593979 619 False 1109 1109 98.875 1572 2193 1 chr3D.!!$F1 621
21 TraesCS2D01G020800 chr2B 575182465 575183109 644 False 837 837 90.093 1 646 1 chr2B.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 617 0.034059 ACACTCTCACAAAGCCCTCG 59.966 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1905 3.687125 GGGTTCGAATCCCTTTCTTTCT 58.313 45.455 17.16 0.0 41.58 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 7.119846 GTGCTATTAATCAACTCAGACACCTTT 59.880 37.037 0.00 0.00 0.00 3.11
186 187 0.550914 AGACACCTTTGTTGGAGGCA 59.449 50.000 0.00 0.00 37.84 4.75
190 191 0.550914 ACCTTTGTTGGAGGCACAGA 59.449 50.000 0.00 0.00 37.84 3.41
192 193 1.477558 CCTTTGTTGGAGGCACAGACT 60.478 52.381 0.00 0.00 0.00 3.24
212 213 3.069980 GAGAGATGTCAGCGGCCGT 62.070 63.158 28.70 11.01 0.00 5.68
258 259 9.967451 TCCAATTGTCAGACCAAATATTAGTTA 57.033 29.630 4.43 0.00 0.00 2.24
370 371 5.151297 CCCAAAGTGGCTTCAAATAATGT 57.849 39.130 0.00 0.00 35.79 2.71
371 372 4.931002 CCCAAAGTGGCTTCAAATAATGTG 59.069 41.667 0.00 0.00 35.79 3.21
372 373 5.511202 CCCAAAGTGGCTTCAAATAATGTGT 60.511 40.000 0.00 0.00 35.79 3.72
373 374 5.406175 CCAAAGTGGCTTCAAATAATGTGTG 59.594 40.000 0.00 0.00 0.00 3.82
374 375 5.789643 AAGTGGCTTCAAATAATGTGTGT 57.210 34.783 0.00 0.00 0.00 3.72
375 376 5.789643 AGTGGCTTCAAATAATGTGTGTT 57.210 34.783 0.00 0.00 0.00 3.32
376 377 5.772521 AGTGGCTTCAAATAATGTGTGTTC 58.227 37.500 0.00 0.00 0.00 3.18
377 378 4.923281 GTGGCTTCAAATAATGTGTGTTCC 59.077 41.667 0.00 0.00 0.00 3.62
378 379 4.165779 GGCTTCAAATAATGTGTGTTCCG 58.834 43.478 0.00 0.00 0.00 4.30
379 380 4.165779 GCTTCAAATAATGTGTGTTCCGG 58.834 43.478 0.00 0.00 0.00 5.14
380 381 4.732784 CTTCAAATAATGTGTGTTCCGGG 58.267 43.478 0.00 0.00 0.00 5.73
381 382 4.022413 TCAAATAATGTGTGTTCCGGGA 57.978 40.909 0.00 0.00 0.00 5.14
382 383 4.399219 TCAAATAATGTGTGTTCCGGGAA 58.601 39.130 5.09 5.09 0.00 3.97
383 384 4.457603 TCAAATAATGTGTGTTCCGGGAAG 59.542 41.667 10.35 0.00 0.00 3.46
384 385 3.713826 ATAATGTGTGTTCCGGGAAGT 57.286 42.857 10.35 0.00 0.00 3.01
385 386 4.829872 ATAATGTGTGTTCCGGGAAGTA 57.170 40.909 10.35 0.00 0.00 2.24
386 387 3.495434 AATGTGTGTTCCGGGAAGTAA 57.505 42.857 10.35 0.00 0.00 2.24
387 388 3.495434 ATGTGTGTTCCGGGAAGTAAA 57.505 42.857 10.35 0.00 0.00 2.01
388 389 3.495434 TGTGTGTTCCGGGAAGTAAAT 57.505 42.857 10.35 0.00 0.00 1.40
389 390 3.142951 TGTGTGTTCCGGGAAGTAAATG 58.857 45.455 10.35 0.00 0.00 2.32
390 391 2.486592 GTGTGTTCCGGGAAGTAAATGG 59.513 50.000 10.35 0.00 0.00 3.16
391 392 2.372504 TGTGTTCCGGGAAGTAAATGGA 59.627 45.455 10.35 0.00 0.00 3.41
392 393 3.009695 TGTGTTCCGGGAAGTAAATGGAT 59.990 43.478 10.35 0.00 0.00 3.41
393 394 4.014406 GTGTTCCGGGAAGTAAATGGATT 58.986 43.478 10.35 0.00 0.00 3.01
394 395 4.461431 GTGTTCCGGGAAGTAAATGGATTT 59.539 41.667 10.35 0.00 0.00 2.17
395 396 5.047590 GTGTTCCGGGAAGTAAATGGATTTT 60.048 40.000 10.35 0.00 0.00 1.82
396 397 6.151480 GTGTTCCGGGAAGTAAATGGATTTTA 59.849 38.462 10.35 0.00 0.00 1.52
397 398 6.720288 TGTTCCGGGAAGTAAATGGATTTTAA 59.280 34.615 10.35 0.00 31.69 1.52
398 399 7.232941 TGTTCCGGGAAGTAAATGGATTTTAAA 59.767 33.333 10.35 0.00 31.69 1.52
399 400 7.778185 TCCGGGAAGTAAATGGATTTTAAAA 57.222 32.000 0.00 2.51 31.69 1.52
400 401 8.368962 TCCGGGAAGTAAATGGATTTTAAAAT 57.631 30.769 13.24 13.24 31.69 1.82
401 402 8.471609 TCCGGGAAGTAAATGGATTTTAAAATC 58.528 33.333 26.19 26.19 43.12 2.17
411 412 4.370364 GATTTTAAAATCCTGGCGCTCA 57.630 40.909 24.53 2.39 39.04 4.26
412 413 4.743493 GATTTTAAAATCCTGGCGCTCAA 58.257 39.130 24.53 0.00 39.04 3.02
413 414 3.848272 TTTAAAATCCTGGCGCTCAAG 57.152 42.857 7.64 2.54 0.00 3.02
414 415 1.750193 TAAAATCCTGGCGCTCAAGG 58.250 50.000 7.64 12.64 0.00 3.61
415 416 0.038166 AAAATCCTGGCGCTCAAGGA 59.962 50.000 23.03 23.03 34.66 3.36
416 417 0.257039 AAATCCTGGCGCTCAAGGAT 59.743 50.000 24.78 24.78 42.41 3.24
417 418 0.179034 AATCCTGGCGCTCAAGGATC 60.179 55.000 28.11 4.94 39.98 3.36
418 419 1.340399 ATCCTGGCGCTCAAGGATCA 61.340 55.000 24.78 9.33 36.52 2.92
419 420 1.147824 CCTGGCGCTCAAGGATCAT 59.852 57.895 16.29 0.00 0.00 2.45
420 421 1.164662 CCTGGCGCTCAAGGATCATG 61.165 60.000 16.29 0.00 0.00 3.07
421 422 1.153107 TGGCGCTCAAGGATCATGG 60.153 57.895 7.64 0.00 0.00 3.66
422 423 1.146930 GGCGCTCAAGGATCATGGA 59.853 57.895 7.64 0.00 0.00 3.41
423 424 0.250640 GGCGCTCAAGGATCATGGAT 60.251 55.000 7.64 0.00 0.00 3.41
424 425 1.602311 GCGCTCAAGGATCATGGATT 58.398 50.000 0.00 0.00 0.00 3.01
425 426 1.952296 GCGCTCAAGGATCATGGATTT 59.048 47.619 0.00 0.00 0.00 2.17
426 427 2.360165 GCGCTCAAGGATCATGGATTTT 59.640 45.455 0.00 0.00 0.00 1.82
427 428 3.794475 GCGCTCAAGGATCATGGATTTTG 60.794 47.826 0.00 0.00 0.00 2.44
428 429 3.628942 CGCTCAAGGATCATGGATTTTGA 59.371 43.478 0.00 0.00 30.87 2.69
429 430 4.096833 CGCTCAAGGATCATGGATTTTGAA 59.903 41.667 0.00 0.00 31.10 2.69
430 431 5.589192 GCTCAAGGATCATGGATTTTGAAG 58.411 41.667 0.00 0.00 31.10 3.02
431 432 5.451520 GCTCAAGGATCATGGATTTTGAAGG 60.452 44.000 0.00 0.00 31.10 3.46
432 433 5.829986 TCAAGGATCATGGATTTTGAAGGA 58.170 37.500 0.00 0.00 29.63 3.36
433 434 6.437755 TCAAGGATCATGGATTTTGAAGGAT 58.562 36.000 0.00 0.00 29.63 3.24
434 435 6.548622 TCAAGGATCATGGATTTTGAAGGATC 59.451 38.462 0.00 0.00 29.63 3.36
435 436 5.392125 AGGATCATGGATTTTGAAGGATCC 58.608 41.667 2.48 2.48 46.08 3.36
436 437 4.217118 GGATCATGGATTTTGAAGGATCCG 59.783 45.833 5.98 0.00 43.86 4.18
437 438 2.951642 TCATGGATTTTGAAGGATCCGC 59.048 45.455 5.98 3.21 43.86 5.54
438 439 1.762708 TGGATTTTGAAGGATCCGCC 58.237 50.000 5.98 2.61 43.86 6.13
439 440 1.005332 TGGATTTTGAAGGATCCGCCA 59.995 47.619 5.98 5.53 43.86 5.69
440 441 1.405463 GGATTTTGAAGGATCCGCCAC 59.595 52.381 5.98 0.00 40.02 5.01
441 442 1.064060 GATTTTGAAGGATCCGCCACG 59.936 52.381 5.98 0.00 40.02 4.94
442 443 0.035598 TTTTGAAGGATCCGCCACGA 59.964 50.000 5.98 0.00 40.02 4.35
443 444 0.672401 TTTGAAGGATCCGCCACGAC 60.672 55.000 5.98 0.00 40.02 4.34
444 445 1.541310 TTGAAGGATCCGCCACGACT 61.541 55.000 5.98 0.00 40.02 4.18
445 446 1.519455 GAAGGATCCGCCACGACTG 60.519 63.158 5.98 0.00 40.02 3.51
446 447 3.665675 AAGGATCCGCCACGACTGC 62.666 63.158 5.98 0.00 40.02 4.40
448 449 4.148825 GATCCGCCACGACTGCCT 62.149 66.667 0.00 0.00 0.00 4.75
449 450 3.665675 GATCCGCCACGACTGCCTT 62.666 63.158 0.00 0.00 0.00 4.35
450 451 3.958147 ATCCGCCACGACTGCCTTG 62.958 63.158 0.00 0.00 0.00 3.61
454 455 3.052082 CCACGACTGCCTTGCCAG 61.052 66.667 0.00 0.00 38.78 4.85
455 456 3.730761 CACGACTGCCTTGCCAGC 61.731 66.667 0.00 0.00 36.29 4.85
456 457 4.254709 ACGACTGCCTTGCCAGCA 62.255 61.111 0.00 0.00 36.29 4.41
457 458 2.979676 CGACTGCCTTGCCAGCAA 60.980 61.111 4.78 4.78 40.35 3.91
458 459 2.647297 GACTGCCTTGCCAGCAAC 59.353 61.111 0.00 0.00 40.35 4.17
459 460 2.123769 ACTGCCTTGCCAGCAACA 60.124 55.556 0.00 0.00 40.35 3.33
460 461 2.337532 CTGCCTTGCCAGCAACAC 59.662 61.111 0.00 0.00 40.35 3.32
461 462 2.123769 TGCCTTGCCAGCAACACT 60.124 55.556 0.00 0.00 37.28 3.55
462 463 1.741327 CTGCCTTGCCAGCAACACTT 61.741 55.000 0.00 0.00 40.35 3.16
463 464 1.300388 GCCTTGCCAGCAACACTTG 60.300 57.895 0.00 0.00 0.00 3.16
464 465 1.364901 CCTTGCCAGCAACACTTGG 59.635 57.895 0.00 0.00 0.00 3.61
465 466 1.394266 CCTTGCCAGCAACACTTGGT 61.394 55.000 0.00 0.00 43.12 3.67
466 467 0.461135 CTTGCCAGCAACACTTGGTT 59.539 50.000 0.00 0.00 39.79 3.67
467 468 1.680735 CTTGCCAGCAACACTTGGTTA 59.319 47.619 0.00 0.00 39.79 2.85
468 469 1.769026 TGCCAGCAACACTTGGTTAA 58.231 45.000 0.00 0.00 39.79 2.01
469 470 2.103373 TGCCAGCAACACTTGGTTAAA 58.897 42.857 0.00 0.00 39.79 1.52
470 471 2.100584 TGCCAGCAACACTTGGTTAAAG 59.899 45.455 0.00 0.00 39.79 1.85
471 472 2.360801 GCCAGCAACACTTGGTTAAAGA 59.639 45.455 0.00 0.00 39.79 2.52
472 473 3.550842 GCCAGCAACACTTGGTTAAAGAG 60.551 47.826 0.00 0.00 39.79 2.85
473 474 3.632145 CCAGCAACACTTGGTTAAAGAGT 59.368 43.478 0.00 0.00 40.91 3.24
474 475 4.097892 CCAGCAACACTTGGTTAAAGAGTT 59.902 41.667 0.00 0.00 46.63 3.01
475 476 5.273944 CAGCAACACTTGGTTAAAGAGTTC 58.726 41.667 0.00 0.00 43.58 3.01
476 477 4.338400 AGCAACACTTGGTTAAAGAGTTCC 59.662 41.667 0.00 0.00 43.58 3.62
477 478 4.097286 GCAACACTTGGTTAAAGAGTTCCA 59.903 41.667 0.00 0.00 43.58 3.53
478 479 5.733373 GCAACACTTGGTTAAAGAGTTCCAG 60.733 44.000 0.00 0.00 43.58 3.86
479 480 5.367945 ACACTTGGTTAAAGAGTTCCAGA 57.632 39.130 0.00 0.00 36.42 3.86
480 481 5.941788 ACACTTGGTTAAAGAGTTCCAGAT 58.058 37.500 0.00 0.00 36.42 2.90
481 482 5.998363 ACACTTGGTTAAAGAGTTCCAGATC 59.002 40.000 0.00 0.00 36.42 2.75
482 483 5.997746 CACTTGGTTAAAGAGTTCCAGATCA 59.002 40.000 0.00 0.00 39.38 2.92
483 484 5.998363 ACTTGGTTAAAGAGTTCCAGATCAC 59.002 40.000 0.00 0.00 39.38 3.06
484 485 5.560722 TGGTTAAAGAGTTCCAGATCACA 57.439 39.130 0.00 0.00 0.00 3.58
485 486 5.551233 TGGTTAAAGAGTTCCAGATCACAG 58.449 41.667 0.00 0.00 0.00 3.66
486 487 5.306937 TGGTTAAAGAGTTCCAGATCACAGA 59.693 40.000 0.00 0.00 0.00 3.41
487 488 6.183361 TGGTTAAAGAGTTCCAGATCACAGAA 60.183 38.462 0.00 0.00 0.00 3.02
488 489 6.370166 GGTTAAAGAGTTCCAGATCACAGAAG 59.630 42.308 0.00 0.00 0.00 2.85
489 490 3.608316 AGAGTTCCAGATCACAGAAGC 57.392 47.619 0.00 0.00 0.00 3.86
490 491 2.235898 AGAGTTCCAGATCACAGAAGCC 59.764 50.000 0.00 0.00 0.00 4.35
491 492 1.980765 AGTTCCAGATCACAGAAGCCA 59.019 47.619 0.00 0.00 0.00 4.75
492 493 2.373169 AGTTCCAGATCACAGAAGCCAA 59.627 45.455 0.00 0.00 0.00 4.52
493 494 2.746362 GTTCCAGATCACAGAAGCCAAG 59.254 50.000 0.00 0.00 0.00 3.61
494 495 1.093159 CCAGATCACAGAAGCCAAGC 58.907 55.000 0.00 0.00 0.00 4.01
495 496 1.093159 CAGATCACAGAAGCCAAGCC 58.907 55.000 0.00 0.00 0.00 4.35
496 497 0.034670 AGATCACAGAAGCCAAGCCC 60.035 55.000 0.00 0.00 0.00 5.19
497 498 0.034670 GATCACAGAAGCCAAGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
498 499 0.034670 ATCACAGAAGCCAAGCCCTC 60.035 55.000 0.00 0.00 0.00 4.30
499 500 1.676967 CACAGAAGCCAAGCCCTCC 60.677 63.158 0.00 0.00 0.00 4.30
500 501 2.044551 CAGAAGCCAAGCCCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
501 502 2.532715 AGAAGCCAAGCCCTCCCA 60.533 61.111 0.00 0.00 0.00 4.37
502 503 2.162906 AGAAGCCAAGCCCTCCCAA 61.163 57.895 0.00 0.00 0.00 4.12
503 504 1.680314 GAAGCCAAGCCCTCCCAAG 60.680 63.158 0.00 0.00 0.00 3.61
504 505 2.432174 GAAGCCAAGCCCTCCCAAGT 62.432 60.000 0.00 0.00 0.00 3.16
505 506 2.677875 GCCAAGCCCTCCCAAGTG 60.678 66.667 0.00 0.00 0.00 3.16
506 507 2.846532 CCAAGCCCTCCCAAGTGT 59.153 61.111 0.00 0.00 0.00 3.55
507 508 1.153756 CCAAGCCCTCCCAAGTGTT 59.846 57.895 0.00 0.00 0.00 3.32
508 509 0.469892 CCAAGCCCTCCCAAGTGTTT 60.470 55.000 0.00 0.00 0.00 2.83
509 510 0.675633 CAAGCCCTCCCAAGTGTTTG 59.324 55.000 0.00 0.00 0.00 2.93
518 519 3.845625 CAAGTGTTTGGGCTTCGTC 57.154 52.632 0.00 0.00 0.00 4.20
519 520 1.021202 CAAGTGTTTGGGCTTCGTCA 58.979 50.000 0.00 0.00 0.00 4.35
520 521 1.608590 CAAGTGTTTGGGCTTCGTCAT 59.391 47.619 0.00 0.00 0.00 3.06
521 522 2.811431 CAAGTGTTTGGGCTTCGTCATA 59.189 45.455 0.00 0.00 0.00 2.15
522 523 3.134574 AGTGTTTGGGCTTCGTCATAA 57.865 42.857 0.00 0.00 0.00 1.90
523 524 2.812011 AGTGTTTGGGCTTCGTCATAAC 59.188 45.455 0.00 0.00 0.00 1.89
524 525 2.550606 GTGTTTGGGCTTCGTCATAACA 59.449 45.455 0.00 0.00 0.00 2.41
525 526 3.190535 GTGTTTGGGCTTCGTCATAACAT 59.809 43.478 0.00 0.00 0.00 2.71
526 527 3.438781 TGTTTGGGCTTCGTCATAACATC 59.561 43.478 0.00 0.00 0.00 3.06
527 528 2.325583 TGGGCTTCGTCATAACATCC 57.674 50.000 0.00 0.00 0.00 3.51
528 529 1.134220 TGGGCTTCGTCATAACATCCC 60.134 52.381 0.00 0.00 0.00 3.85
529 530 1.134220 GGGCTTCGTCATAACATCCCA 60.134 52.381 0.00 0.00 32.89 4.37
530 531 2.487265 GGGCTTCGTCATAACATCCCAT 60.487 50.000 0.00 0.00 32.89 4.00
531 532 2.549754 GGCTTCGTCATAACATCCCATG 59.450 50.000 0.00 0.00 0.00 3.66
532 533 2.031682 GCTTCGTCATAACATCCCATGC 60.032 50.000 0.00 0.00 0.00 4.06
533 534 2.998316 TCGTCATAACATCCCATGCA 57.002 45.000 0.00 0.00 0.00 3.96
534 535 3.274095 TCGTCATAACATCCCATGCAA 57.726 42.857 0.00 0.00 0.00 4.08
535 536 2.942376 TCGTCATAACATCCCATGCAAC 59.058 45.455 0.00 0.00 0.00 4.17
536 537 2.033299 CGTCATAACATCCCATGCAACC 59.967 50.000 0.00 0.00 0.00 3.77
537 538 2.362077 GTCATAACATCCCATGCAACCC 59.638 50.000 0.00 0.00 0.00 4.11
538 539 2.024560 TCATAACATCCCATGCAACCCA 60.025 45.455 0.00 0.00 0.00 4.51
539 540 2.612285 TAACATCCCATGCAACCCAA 57.388 45.000 0.00 0.00 0.00 4.12
540 541 0.975887 AACATCCCATGCAACCCAAC 59.024 50.000 0.00 0.00 0.00 3.77
541 542 0.178938 ACATCCCATGCAACCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
542 543 0.247185 CATCCCATGCAACCCAACAC 59.753 55.000 0.00 0.00 0.00 3.32
543 544 0.178938 ATCCCATGCAACCCAACACA 60.179 50.000 0.00 0.00 0.00 3.72
544 545 0.827089 TCCCATGCAACCCAACACAG 60.827 55.000 0.00 0.00 0.00 3.66
545 546 1.114722 CCCATGCAACCCAACACAGT 61.115 55.000 0.00 0.00 0.00 3.55
546 547 0.752054 CCATGCAACCCAACACAGTT 59.248 50.000 0.00 0.00 0.00 3.16
547 548 1.138661 CCATGCAACCCAACACAGTTT 59.861 47.619 0.00 0.00 0.00 2.66
548 549 2.363680 CCATGCAACCCAACACAGTTTA 59.636 45.455 0.00 0.00 0.00 2.01
549 550 3.006752 CCATGCAACCCAACACAGTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
550 551 3.724508 TGCAACCCAACACAGTTTATG 57.275 42.857 0.00 0.00 0.00 1.90
551 552 3.027412 TGCAACCCAACACAGTTTATGT 58.973 40.909 0.00 0.00 45.43 2.29
552 553 3.449018 TGCAACCCAACACAGTTTATGTT 59.551 39.130 0.00 0.00 41.41 2.71
553 554 4.081420 TGCAACCCAACACAGTTTATGTTT 60.081 37.500 0.00 0.00 41.41 2.83
554 555 4.873259 GCAACCCAACACAGTTTATGTTTT 59.127 37.500 0.00 0.00 41.41 2.43
555 556 5.006261 GCAACCCAACACAGTTTATGTTTTC 59.994 40.000 0.00 0.00 41.41 2.29
556 557 5.270893 ACCCAACACAGTTTATGTTTTCC 57.729 39.130 0.00 0.00 41.41 3.13
557 558 4.959839 ACCCAACACAGTTTATGTTTTCCT 59.040 37.500 0.00 0.00 41.41 3.36
558 559 5.423931 ACCCAACACAGTTTATGTTTTCCTT 59.576 36.000 0.00 0.00 41.41 3.36
559 560 5.752955 CCCAACACAGTTTATGTTTTCCTTG 59.247 40.000 0.00 0.00 41.41 3.61
560 561 5.234116 CCAACACAGTTTATGTTTTCCTTGC 59.766 40.000 0.00 0.00 41.41 4.01
561 562 5.852282 ACACAGTTTATGTTTTCCTTGCT 57.148 34.783 0.00 0.00 41.41 3.91
562 563 6.220726 ACACAGTTTATGTTTTCCTTGCTT 57.779 33.333 0.00 0.00 41.41 3.91
563 564 6.042143 ACACAGTTTATGTTTTCCTTGCTTG 58.958 36.000 0.00 0.00 41.41 4.01
564 565 6.127479 ACACAGTTTATGTTTTCCTTGCTTGA 60.127 34.615 0.00 0.00 41.41 3.02
565 566 6.925165 CACAGTTTATGTTTTCCTTGCTTGAT 59.075 34.615 0.00 0.00 41.41 2.57
566 567 6.925165 ACAGTTTATGTTTTCCTTGCTTGATG 59.075 34.615 0.00 0.00 39.96 3.07
567 568 5.928264 AGTTTATGTTTTCCTTGCTTGATGC 59.072 36.000 0.00 0.00 43.25 3.91
568 569 2.818130 TGTTTTCCTTGCTTGATGCC 57.182 45.000 0.00 0.00 42.00 4.40
569 570 1.344114 TGTTTTCCTTGCTTGATGCCC 59.656 47.619 0.00 0.00 42.00 5.36
570 571 0.975887 TTTTCCTTGCTTGATGCCCC 59.024 50.000 0.00 0.00 42.00 5.80
571 572 0.178938 TTTCCTTGCTTGATGCCCCA 60.179 50.000 0.00 0.00 42.00 4.96
572 573 0.041535 TTCCTTGCTTGATGCCCCAT 59.958 50.000 0.00 0.00 42.00 4.00
573 574 0.396139 TCCTTGCTTGATGCCCCATC 60.396 55.000 0.00 0.00 40.88 3.51
574 575 1.731433 CCTTGCTTGATGCCCCATCG 61.731 60.000 1.28 0.00 43.14 3.84
575 576 1.731433 CTTGCTTGATGCCCCATCGG 61.731 60.000 1.28 0.00 43.14 4.18
576 577 2.192979 GCTTGATGCCCCATCGGA 59.807 61.111 1.28 0.00 43.14 4.55
577 578 1.453745 GCTTGATGCCCCATCGGAA 60.454 57.895 1.28 0.00 43.14 4.30
578 579 1.728490 GCTTGATGCCCCATCGGAAC 61.728 60.000 1.28 0.00 43.14 3.62
579 580 1.077068 TTGATGCCCCATCGGAACC 60.077 57.895 1.28 0.00 43.14 3.62
580 581 2.591715 GATGCCCCATCGGAACCG 60.592 66.667 6.94 6.94 41.35 4.44
581 582 4.875713 ATGCCCCATCGGAACCGC 62.876 66.667 8.48 0.00 39.59 5.68
584 585 4.856801 CCCCATCGGAACCGCCTG 62.857 72.222 8.48 8.24 39.59 4.85
585 586 3.781307 CCCATCGGAACCGCCTGA 61.781 66.667 8.48 0.00 39.59 3.86
586 587 2.505982 CCATCGGAACCGCCTGAT 59.494 61.111 8.48 0.00 39.59 2.90
587 588 1.595382 CCATCGGAACCGCCTGATC 60.595 63.158 8.48 0.00 39.59 2.92
588 589 1.143838 CATCGGAACCGCCTGATCA 59.856 57.895 8.48 0.00 39.59 2.92
589 590 0.877649 CATCGGAACCGCCTGATCAG 60.878 60.000 16.24 16.24 39.59 2.90
590 591 1.043116 ATCGGAACCGCCTGATCAGA 61.043 55.000 24.62 0.84 39.59 3.27
591 592 1.227089 CGGAACCGCCTGATCAGAG 60.227 63.158 24.62 16.37 0.00 3.35
592 593 1.667154 CGGAACCGCCTGATCAGAGA 61.667 60.000 24.62 0.00 0.00 3.10
593 594 0.537188 GGAACCGCCTGATCAGAGAA 59.463 55.000 24.62 0.00 0.00 2.87
594 595 1.472376 GGAACCGCCTGATCAGAGAAG 60.472 57.143 24.62 11.68 0.00 2.85
595 596 1.205893 GAACCGCCTGATCAGAGAAGT 59.794 52.381 24.62 12.30 0.00 3.01
596 597 0.820871 ACCGCCTGATCAGAGAAGTC 59.179 55.000 24.62 4.92 0.00 3.01
597 598 0.820226 CCGCCTGATCAGAGAAGTCA 59.180 55.000 24.62 0.00 0.00 3.41
598 599 1.470632 CCGCCTGATCAGAGAAGTCAC 60.471 57.143 24.62 2.24 0.00 3.67
599 600 1.203287 CGCCTGATCAGAGAAGTCACA 59.797 52.381 24.62 0.00 0.00 3.58
600 601 2.615869 GCCTGATCAGAGAAGTCACAC 58.384 52.381 24.62 0.00 0.00 3.82
601 602 2.233431 GCCTGATCAGAGAAGTCACACT 59.767 50.000 24.62 0.00 0.00 3.55
602 603 3.675775 GCCTGATCAGAGAAGTCACACTC 60.676 52.174 24.62 0.00 0.00 3.51
603 604 3.763360 CCTGATCAGAGAAGTCACACTCT 59.237 47.826 24.62 0.00 43.13 3.24
604 605 4.142403 CCTGATCAGAGAAGTCACACTCTC 60.142 50.000 24.62 0.91 40.85 3.20
605 606 4.401925 TGATCAGAGAAGTCACACTCTCA 58.598 43.478 9.06 0.00 40.85 3.27
606 607 4.217334 TGATCAGAGAAGTCACACTCTCAC 59.783 45.833 9.06 2.84 40.85 3.51
607 608 3.555966 TCAGAGAAGTCACACTCTCACA 58.444 45.455 9.06 0.00 40.85 3.58
608 609 3.954258 TCAGAGAAGTCACACTCTCACAA 59.046 43.478 9.06 0.00 40.85 3.33
609 610 4.402474 TCAGAGAAGTCACACTCTCACAAA 59.598 41.667 9.06 0.00 40.85 2.83
610 611 4.744137 CAGAGAAGTCACACTCTCACAAAG 59.256 45.833 9.06 0.00 40.85 2.77
611 612 3.462021 AGAAGTCACACTCTCACAAAGC 58.538 45.455 0.00 0.00 0.00 3.51
612 613 2.246719 AGTCACACTCTCACAAAGCC 57.753 50.000 0.00 0.00 0.00 4.35
613 614 1.202698 AGTCACACTCTCACAAAGCCC 60.203 52.381 0.00 0.00 0.00 5.19
614 615 1.131638 TCACACTCTCACAAAGCCCT 58.868 50.000 0.00 0.00 0.00 5.19
615 616 1.070758 TCACACTCTCACAAAGCCCTC 59.929 52.381 0.00 0.00 0.00 4.30
616 617 0.034059 ACACTCTCACAAAGCCCTCG 59.966 55.000 0.00 0.00 0.00 4.63
617 618 0.318441 CACTCTCACAAAGCCCTCGA 59.682 55.000 0.00 0.00 0.00 4.04
618 619 0.605589 ACTCTCACAAAGCCCTCGAG 59.394 55.000 5.13 5.13 0.00 4.04
619 620 0.108424 CTCTCACAAAGCCCTCGAGG 60.108 60.000 25.36 25.36 39.47 4.63
632 633 3.211288 CGAGGGAGTCGGAAGCAT 58.789 61.111 0.00 0.00 45.58 3.79
633 634 1.227089 CGAGGGAGTCGGAAGCATG 60.227 63.158 0.00 0.00 45.58 4.06
634 635 1.667154 CGAGGGAGTCGGAAGCATGA 61.667 60.000 0.00 0.00 45.58 3.07
635 636 0.179097 GAGGGAGTCGGAAGCATGAC 60.179 60.000 0.00 0.00 35.33 3.06
636 637 0.904865 AGGGAGTCGGAAGCATGACA 60.905 55.000 0.00 0.00 37.58 3.58
637 638 0.179000 GGGAGTCGGAAGCATGACAT 59.821 55.000 0.00 0.00 37.58 3.06
638 639 1.293924 GGAGTCGGAAGCATGACATG 58.706 55.000 11.27 11.27 37.58 3.21
639 640 1.293924 GAGTCGGAAGCATGACATGG 58.706 55.000 17.03 0.18 37.58 3.66
640 641 0.904649 AGTCGGAAGCATGACATGGA 59.095 50.000 17.03 2.64 37.58 3.41
641 642 1.134580 AGTCGGAAGCATGACATGGAG 60.135 52.381 17.03 0.00 37.58 3.86
642 643 0.904649 TCGGAAGCATGACATGGAGT 59.095 50.000 17.03 0.00 0.00 3.85
643 644 2.107366 TCGGAAGCATGACATGGAGTA 58.893 47.619 17.03 0.00 0.00 2.59
644 645 2.159099 TCGGAAGCATGACATGGAGTAC 60.159 50.000 17.03 0.00 0.00 2.73
645 646 2.418609 CGGAAGCATGACATGGAGTACA 60.419 50.000 17.03 0.00 0.00 2.90
646 647 2.939103 GGAAGCATGACATGGAGTACAC 59.061 50.000 17.03 0.00 0.00 2.90
647 648 2.698855 AGCATGACATGGAGTACACC 57.301 50.000 17.03 1.82 0.00 4.16
648 649 1.134699 AGCATGACATGGAGTACACCG 60.135 52.381 17.03 0.00 0.00 4.94
649 650 1.939974 CATGACATGGAGTACACCGG 58.060 55.000 7.60 0.00 0.00 5.28
650 651 1.207089 CATGACATGGAGTACACCGGT 59.793 52.381 0.00 0.00 0.00 5.28
651 652 2.219080 TGACATGGAGTACACCGGTA 57.781 50.000 6.87 0.00 0.00 4.02
652 653 2.742348 TGACATGGAGTACACCGGTAT 58.258 47.619 6.87 0.00 0.00 2.73
653 654 3.101437 TGACATGGAGTACACCGGTATT 58.899 45.455 6.87 0.00 0.00 1.89
654 655 3.118920 TGACATGGAGTACACCGGTATTG 60.119 47.826 6.87 0.00 0.00 1.90
655 656 2.210116 CATGGAGTACACCGGTATTGC 58.790 52.381 6.87 0.08 0.00 3.56
656 657 0.538118 TGGAGTACACCGGTATTGCC 59.462 55.000 6.87 6.24 28.40 4.52
657 658 0.828677 GGAGTACACCGGTATTGCCT 59.171 55.000 6.87 0.00 34.25 4.75
658 659 1.472728 GGAGTACACCGGTATTGCCTG 60.473 57.143 6.87 0.00 34.25 4.85
659 660 0.107848 AGTACACCGGTATTGCCTGC 60.108 55.000 6.87 0.00 34.25 4.85
660 661 1.153529 TACACCGGTATTGCCTGCG 60.154 57.895 6.87 0.00 34.25 5.18
661 662 3.876198 CACCGGTATTGCCTGCGC 61.876 66.667 6.87 0.00 34.25 6.09
662 663 4.096003 ACCGGTATTGCCTGCGCT 62.096 61.111 4.49 0.00 35.36 5.92
663 664 2.108157 CCGGTATTGCCTGCGCTA 59.892 61.111 9.73 0.00 35.36 4.26
664 665 2.244651 CCGGTATTGCCTGCGCTAC 61.245 63.158 9.73 0.66 35.36 3.58
665 666 1.520564 CGGTATTGCCTGCGCTACA 60.521 57.895 9.73 0.36 35.36 2.74
666 667 1.490693 CGGTATTGCCTGCGCTACAG 61.491 60.000 9.73 0.00 46.77 2.74
679 680 5.657470 TGCGCTACAGATTTGATCAATAC 57.343 39.130 9.40 6.63 0.00 1.89
680 681 4.511454 TGCGCTACAGATTTGATCAATACC 59.489 41.667 9.40 1.75 0.00 2.73
681 682 4.752101 GCGCTACAGATTTGATCAATACCT 59.248 41.667 9.40 4.11 0.00 3.08
682 683 5.107298 GCGCTACAGATTTGATCAATACCTC 60.107 44.000 9.40 4.58 0.00 3.85
683 684 5.406780 CGCTACAGATTTGATCAATACCTCC 59.593 44.000 9.40 0.00 0.00 4.30
684 685 6.529220 GCTACAGATTTGATCAATACCTCCT 58.471 40.000 9.40 0.00 0.00 3.69
685 686 6.995091 GCTACAGATTTGATCAATACCTCCTT 59.005 38.462 9.40 0.00 0.00 3.36
686 687 7.500559 GCTACAGATTTGATCAATACCTCCTTT 59.499 37.037 9.40 0.00 0.00 3.11
687 688 9.401058 CTACAGATTTGATCAATACCTCCTTTT 57.599 33.333 9.40 0.00 0.00 2.27
688 689 8.286191 ACAGATTTGATCAATACCTCCTTTTC 57.714 34.615 9.40 0.00 0.00 2.29
689 690 8.112183 ACAGATTTGATCAATACCTCCTTTTCT 58.888 33.333 9.40 0.00 0.00 2.52
690 691 8.404000 CAGATTTGATCAATACCTCCTTTTCTG 58.596 37.037 9.40 5.78 0.00 3.02
691 692 6.515272 TTTGATCAATACCTCCTTTTCTGC 57.485 37.500 9.40 0.00 0.00 4.26
692 693 5.178096 TGATCAATACCTCCTTTTCTGCA 57.822 39.130 0.00 0.00 0.00 4.41
693 694 5.188434 TGATCAATACCTCCTTTTCTGCAG 58.812 41.667 7.63 7.63 0.00 4.41
694 695 3.347216 TCAATACCTCCTTTTCTGCAGC 58.653 45.455 9.47 0.00 0.00 5.25
695 696 3.084039 CAATACCTCCTTTTCTGCAGCA 58.916 45.455 9.47 0.00 0.00 4.41
696 697 2.479566 TACCTCCTTTTCTGCAGCAG 57.520 50.000 17.10 17.10 0.00 4.24
697 698 0.767375 ACCTCCTTTTCTGCAGCAGA 59.233 50.000 21.85 21.85 38.87 4.26
698 699 1.353694 ACCTCCTTTTCTGCAGCAGAT 59.646 47.619 25.94 5.47 40.39 2.90
699 700 2.573462 ACCTCCTTTTCTGCAGCAGATA 59.427 45.455 25.94 18.37 40.39 1.98
700 701 3.009473 ACCTCCTTTTCTGCAGCAGATAA 59.991 43.478 25.94 23.92 40.39 1.75
701 702 4.012374 CCTCCTTTTCTGCAGCAGATAAA 58.988 43.478 25.94 23.11 40.39 1.40
702 703 4.460382 CCTCCTTTTCTGCAGCAGATAAAA 59.540 41.667 25.94 21.05 40.39 1.52
703 704 5.392811 CCTCCTTTTCTGCAGCAGATAAAAG 60.393 44.000 28.43 28.43 40.39 2.27
704 705 4.082571 TCCTTTTCTGCAGCAGATAAAAGC 60.083 41.667 29.31 0.00 40.39 3.51
705 706 4.082354 CCTTTTCTGCAGCAGATAAAAGCT 60.082 41.667 29.31 0.00 40.39 3.74
706 707 5.458041 TTTTCTGCAGCAGATAAAAGCTT 57.542 34.783 25.94 0.00 40.39 3.74
707 708 4.691860 TTCTGCAGCAGATAAAAGCTTC 57.308 40.909 25.94 0.00 40.39 3.86
708 709 3.947868 TCTGCAGCAGATAAAAGCTTCT 58.052 40.909 21.85 0.00 39.50 2.85
709 710 3.937706 TCTGCAGCAGATAAAAGCTTCTC 59.062 43.478 21.85 0.00 39.50 2.87
710 711 3.012518 TGCAGCAGATAAAAGCTTCTCC 58.987 45.455 0.00 0.00 39.50 3.71
711 712 2.031437 GCAGCAGATAAAAGCTTCTCCG 59.969 50.000 0.00 0.00 39.50 4.63
712 713 3.265791 CAGCAGATAAAAGCTTCTCCGT 58.734 45.455 0.00 0.00 39.50 4.69
713 714 3.308323 CAGCAGATAAAAGCTTCTCCGTC 59.692 47.826 0.00 0.00 39.50 4.79
714 715 2.609916 GCAGATAAAAGCTTCTCCGTCC 59.390 50.000 0.00 0.00 0.00 4.79
715 716 3.861840 CAGATAAAAGCTTCTCCGTCCA 58.138 45.455 0.00 0.00 0.00 4.02
716 717 4.446371 CAGATAAAAGCTTCTCCGTCCAT 58.554 43.478 0.00 0.00 0.00 3.41
717 718 4.509600 CAGATAAAAGCTTCTCCGTCCATC 59.490 45.833 0.00 0.00 0.00 3.51
718 719 2.115343 AAAAGCTTCTCCGTCCATCC 57.885 50.000 0.00 0.00 0.00 3.51
719 720 0.253327 AAAGCTTCTCCGTCCATCCC 59.747 55.000 0.00 0.00 0.00 3.85
720 721 1.627297 AAGCTTCTCCGTCCATCCCC 61.627 60.000 0.00 0.00 0.00 4.81
721 722 2.066999 GCTTCTCCGTCCATCCCCT 61.067 63.158 0.00 0.00 0.00 4.79
722 723 0.759436 GCTTCTCCGTCCATCCCCTA 60.759 60.000 0.00 0.00 0.00 3.53
723 724 1.789523 CTTCTCCGTCCATCCCCTAA 58.210 55.000 0.00 0.00 0.00 2.69
724 725 1.413077 CTTCTCCGTCCATCCCCTAAC 59.587 57.143 0.00 0.00 0.00 2.34
725 726 0.398098 TCTCCGTCCATCCCCTAACC 60.398 60.000 0.00 0.00 0.00 2.85
726 727 0.398664 CTCCGTCCATCCCCTAACCT 60.399 60.000 0.00 0.00 0.00 3.50
727 728 0.043637 TCCGTCCATCCCCTAACCTT 59.956 55.000 0.00 0.00 0.00 3.50
728 729 0.468648 CCGTCCATCCCCTAACCTTC 59.531 60.000 0.00 0.00 0.00 3.46
729 730 1.497161 CGTCCATCCCCTAACCTTCT 58.503 55.000 0.00 0.00 0.00 2.85
730 731 1.413077 CGTCCATCCCCTAACCTTCTC 59.587 57.143 0.00 0.00 0.00 2.87
731 732 1.769465 GTCCATCCCCTAACCTTCTCC 59.231 57.143 0.00 0.00 0.00 3.71
732 733 1.141185 CCATCCCCTAACCTTCTCCC 58.859 60.000 0.00 0.00 0.00 4.30
733 734 1.628043 CCATCCCCTAACCTTCTCCCA 60.628 57.143 0.00 0.00 0.00 4.37
734 735 2.422746 CATCCCCTAACCTTCTCCCAT 58.577 52.381 0.00 0.00 0.00 4.00
735 736 3.598264 CATCCCCTAACCTTCTCCCATA 58.402 50.000 0.00 0.00 0.00 2.74
736 737 3.056201 TCCCCTAACCTTCTCCCATAC 57.944 52.381 0.00 0.00 0.00 2.39
737 738 2.319747 TCCCCTAACCTTCTCCCATACA 59.680 50.000 0.00 0.00 0.00 2.29
738 739 2.438392 CCCCTAACCTTCTCCCATACAC 59.562 54.545 0.00 0.00 0.00 2.90
739 740 2.102588 CCCTAACCTTCTCCCATACACG 59.897 54.545 0.00 0.00 0.00 4.49
740 741 3.028850 CCTAACCTTCTCCCATACACGA 58.971 50.000 0.00 0.00 0.00 4.35
741 742 3.641906 CCTAACCTTCTCCCATACACGAT 59.358 47.826 0.00 0.00 0.00 3.73
742 743 3.821421 AACCTTCTCCCATACACGATC 57.179 47.619 0.00 0.00 0.00 3.69
743 744 3.033659 ACCTTCTCCCATACACGATCT 57.966 47.619 0.00 0.00 0.00 2.75
744 745 2.959707 ACCTTCTCCCATACACGATCTC 59.040 50.000 0.00 0.00 0.00 2.75
745 746 2.030717 CCTTCTCCCATACACGATCTCG 60.031 54.545 0.00 0.00 46.33 4.04
1422 1502 8.931568 CCTAAAGGTACCTACACAATACCTAAT 58.068 37.037 16.67 0.00 46.48 1.73
1441 1521 7.935405 ACCTAATCACCTAACCCTATTTTTGA 58.065 34.615 0.00 0.00 0.00 2.69
1834 1934 0.819582 GGATTCGAACCCTCGGTACA 59.180 55.000 0.00 0.00 45.49 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 0.321653 GCACAACCTCGTCTTGGGAT 60.322 55.000 0.00 0.00 0.00 3.85
136 137 0.320374 TAGCACAACCTCGTCTTGGG 59.680 55.000 0.00 0.00 0.00 4.12
176 177 0.836606 TCAAGTCTGTGCCTCCAACA 59.163 50.000 0.00 0.00 0.00 3.33
186 187 2.094803 CGCTGACATCTCTCAAGTCTGT 60.095 50.000 0.00 0.00 34.81 3.41
190 191 0.108424 GCCGCTGACATCTCTCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
192 193 1.219124 GGCCGCTGACATCTCTCAA 59.781 57.895 0.00 0.00 0.00 3.02
212 213 3.837731 GGATTCCCAGGGAAAACATGAAA 59.162 43.478 25.64 0.00 45.41 2.69
366 367 3.495434 TTACTTCCCGGAACACACATT 57.505 42.857 0.73 0.00 0.00 2.71
367 368 3.495434 TTTACTTCCCGGAACACACAT 57.505 42.857 0.73 0.00 0.00 3.21
368 369 3.142951 CATTTACTTCCCGGAACACACA 58.857 45.455 0.73 0.00 0.00 3.72
369 370 2.486592 CCATTTACTTCCCGGAACACAC 59.513 50.000 0.73 0.00 0.00 3.82
370 371 2.372504 TCCATTTACTTCCCGGAACACA 59.627 45.455 0.73 0.00 0.00 3.72
371 372 3.062122 TCCATTTACTTCCCGGAACAC 57.938 47.619 0.73 0.00 0.00 3.32
372 373 4.310022 AATCCATTTACTTCCCGGAACA 57.690 40.909 0.73 0.00 0.00 3.18
373 374 5.654603 AAAATCCATTTACTTCCCGGAAC 57.345 39.130 0.73 0.00 0.00 3.62
374 375 7.778185 TTTAAAATCCATTTACTTCCCGGAA 57.222 32.000 0.73 0.00 33.26 4.30
375 376 7.778185 TTTTAAAATCCATTTACTTCCCGGA 57.222 32.000 0.73 0.00 33.26 5.14
376 377 8.642908 GATTTTAAAATCCATTTACTTCCCGG 57.357 34.615 24.53 0.00 39.04 5.73
390 391 4.370364 TGAGCGCCAGGATTTTAAAATC 57.630 40.909 26.19 26.19 43.12 2.17
391 392 4.381932 CCTTGAGCGCCAGGATTTTAAAAT 60.382 41.667 13.24 13.24 0.00 1.82
392 393 3.056891 CCTTGAGCGCCAGGATTTTAAAA 60.057 43.478 11.64 2.51 0.00 1.52
393 394 2.491693 CCTTGAGCGCCAGGATTTTAAA 59.508 45.455 11.64 0.00 0.00 1.52
394 395 2.091541 CCTTGAGCGCCAGGATTTTAA 58.908 47.619 11.64 0.00 0.00 1.52
395 396 1.280710 TCCTTGAGCGCCAGGATTTTA 59.719 47.619 14.97 0.00 0.00 1.52
396 397 0.038166 TCCTTGAGCGCCAGGATTTT 59.962 50.000 14.97 0.00 0.00 1.82
397 398 0.257039 ATCCTTGAGCGCCAGGATTT 59.743 50.000 22.01 7.61 37.88 2.17
398 399 0.179034 GATCCTTGAGCGCCAGGATT 60.179 55.000 26.16 14.86 40.85 3.01
399 400 1.340399 TGATCCTTGAGCGCCAGGAT 61.340 55.000 25.88 25.88 43.19 3.24
400 401 1.340399 ATGATCCTTGAGCGCCAGGA 61.340 55.000 19.79 19.79 34.66 3.86
401 402 1.147824 ATGATCCTTGAGCGCCAGG 59.852 57.895 2.29 7.79 0.00 4.45
402 403 1.164662 CCATGATCCTTGAGCGCCAG 61.165 60.000 2.29 0.00 0.00 4.85
403 404 1.153107 CCATGATCCTTGAGCGCCA 60.153 57.895 2.29 0.00 0.00 5.69
404 405 0.250640 ATCCATGATCCTTGAGCGCC 60.251 55.000 2.29 0.00 0.00 6.53
405 406 1.602311 AATCCATGATCCTTGAGCGC 58.398 50.000 0.00 0.00 0.00 5.92
406 407 3.628942 TCAAAATCCATGATCCTTGAGCG 59.371 43.478 0.00 0.00 0.00 5.03
407 408 5.451520 CCTTCAAAATCCATGATCCTTGAGC 60.452 44.000 0.00 0.00 30.77 4.26
408 409 5.889853 TCCTTCAAAATCCATGATCCTTGAG 59.110 40.000 0.00 0.00 30.77 3.02
409 410 5.829986 TCCTTCAAAATCCATGATCCTTGA 58.170 37.500 0.00 0.00 0.00 3.02
410 411 6.239232 GGATCCTTCAAAATCCATGATCCTTG 60.239 42.308 3.84 0.00 42.15 3.61
411 412 5.837438 GGATCCTTCAAAATCCATGATCCTT 59.163 40.000 3.84 0.00 42.15 3.36
412 413 5.392125 GGATCCTTCAAAATCCATGATCCT 58.608 41.667 3.84 0.00 42.15 3.24
413 414 4.217118 CGGATCCTTCAAAATCCATGATCC 59.783 45.833 10.75 0.00 41.35 3.36
414 415 4.320788 GCGGATCCTTCAAAATCCATGATC 60.321 45.833 10.75 0.00 41.35 2.92
415 416 3.571401 GCGGATCCTTCAAAATCCATGAT 59.429 43.478 10.75 0.00 41.35 2.45
416 417 2.951642 GCGGATCCTTCAAAATCCATGA 59.048 45.455 10.75 0.00 41.35 3.07
417 418 2.035066 GGCGGATCCTTCAAAATCCATG 59.965 50.000 10.75 0.00 41.35 3.66
418 419 2.310538 GGCGGATCCTTCAAAATCCAT 58.689 47.619 10.75 0.00 41.35 3.41
419 420 1.005332 TGGCGGATCCTTCAAAATCCA 59.995 47.619 10.75 1.51 41.35 3.41
420 421 1.405463 GTGGCGGATCCTTCAAAATCC 59.595 52.381 10.75 0.00 38.47 3.01
421 422 1.064060 CGTGGCGGATCCTTCAAAATC 59.936 52.381 10.75 0.00 35.26 2.17
422 423 1.094785 CGTGGCGGATCCTTCAAAAT 58.905 50.000 10.75 0.00 35.26 1.82
423 424 0.035598 TCGTGGCGGATCCTTCAAAA 59.964 50.000 10.75 0.00 35.26 2.44
424 425 0.672401 GTCGTGGCGGATCCTTCAAA 60.672 55.000 10.75 0.00 35.26 2.69
425 426 1.079405 GTCGTGGCGGATCCTTCAA 60.079 57.895 10.75 0.00 35.26 2.69
426 427 1.982395 AGTCGTGGCGGATCCTTCA 60.982 57.895 10.75 4.96 35.26 3.02
427 428 1.519455 CAGTCGTGGCGGATCCTTC 60.519 63.158 10.75 2.09 35.26 3.46
428 429 2.579201 CAGTCGTGGCGGATCCTT 59.421 61.111 10.75 0.00 35.26 3.36
429 430 4.148825 GCAGTCGTGGCGGATCCT 62.149 66.667 10.75 0.00 35.26 3.24
437 438 3.052082 CTGGCAAGGCAGTCGTGG 61.052 66.667 14.77 0.00 0.00 4.94
438 439 3.730761 GCTGGCAAGGCAGTCGTG 61.731 66.667 22.29 0.91 0.00 4.35
439 440 3.772853 TTGCTGGCAAGGCAGTCGT 62.773 57.895 22.29 0.00 40.90 4.34
440 441 2.979676 TTGCTGGCAAGGCAGTCG 60.980 61.111 22.29 1.61 40.90 4.18
441 442 2.195567 TGTTGCTGGCAAGGCAGTC 61.196 57.895 22.29 15.54 40.90 3.51
442 443 2.123769 TGTTGCTGGCAAGGCAGT 60.124 55.556 22.29 0.00 40.90 4.40
443 444 1.741327 AAGTGTTGCTGGCAAGGCAG 61.741 55.000 18.19 18.19 40.90 4.85
444 445 1.757731 AAGTGTTGCTGGCAAGGCA 60.758 52.632 8.34 0.00 36.52 4.75
445 446 1.300388 CAAGTGTTGCTGGCAAGGC 60.300 57.895 8.34 4.85 36.52 4.35
446 447 1.364901 CCAAGTGTTGCTGGCAAGG 59.635 57.895 8.34 2.52 36.52 3.61
447 448 0.461135 AACCAAGTGTTGCTGGCAAG 59.539 50.000 8.34 0.00 36.52 4.01
448 449 1.769026 TAACCAAGTGTTGCTGGCAA 58.231 45.000 3.72 3.72 37.83 4.52
449 450 1.769026 TTAACCAAGTGTTGCTGGCA 58.231 45.000 0.00 0.00 37.83 4.92
450 451 2.360801 TCTTTAACCAAGTGTTGCTGGC 59.639 45.455 0.00 0.00 37.83 4.85
451 452 3.632145 ACTCTTTAACCAAGTGTTGCTGG 59.368 43.478 0.00 0.00 36.04 4.85
452 453 4.900635 ACTCTTTAACCAAGTGTTGCTG 57.099 40.909 0.00 0.00 36.04 4.41
453 454 4.338400 GGAACTCTTTAACCAAGTGTTGCT 59.662 41.667 11.49 0.00 46.13 3.91
454 455 4.607955 GGAACTCTTTAACCAAGTGTTGC 58.392 43.478 6.74 6.15 45.23 4.17
455 456 5.588648 TCTGGAACTCTTTAACCAAGTGTTG 59.411 40.000 6.74 0.00 45.23 3.33
456 457 5.751586 TCTGGAACTCTTTAACCAAGTGTT 58.248 37.500 2.52 2.52 46.98 3.32
457 458 5.367945 TCTGGAACTCTTTAACCAAGTGT 57.632 39.130 0.00 0.00 40.29 3.55
458 459 5.997746 TGATCTGGAACTCTTTAACCAAGTG 59.002 40.000 0.00 0.00 33.66 3.16
459 460 5.998363 GTGATCTGGAACTCTTTAACCAAGT 59.002 40.000 0.00 0.00 33.66 3.16
460 461 5.997746 TGTGATCTGGAACTCTTTAACCAAG 59.002 40.000 0.00 0.00 31.85 3.61
461 462 5.935945 TGTGATCTGGAACTCTTTAACCAA 58.064 37.500 0.00 0.00 31.85 3.67
462 463 5.306937 TCTGTGATCTGGAACTCTTTAACCA 59.693 40.000 0.00 0.00 0.00 3.67
463 464 5.794894 TCTGTGATCTGGAACTCTTTAACC 58.205 41.667 0.00 0.00 0.00 2.85
464 465 6.128418 GCTTCTGTGATCTGGAACTCTTTAAC 60.128 42.308 0.00 0.00 0.00 2.01
465 466 5.934625 GCTTCTGTGATCTGGAACTCTTTAA 59.065 40.000 0.00 0.00 0.00 1.52
466 467 5.482908 GCTTCTGTGATCTGGAACTCTTTA 58.517 41.667 0.00 0.00 0.00 1.85
467 468 4.322567 GCTTCTGTGATCTGGAACTCTTT 58.677 43.478 0.00 0.00 0.00 2.52
468 469 3.307339 GGCTTCTGTGATCTGGAACTCTT 60.307 47.826 0.00 0.00 0.00 2.85
469 470 2.235898 GGCTTCTGTGATCTGGAACTCT 59.764 50.000 0.00 0.00 0.00 3.24
470 471 2.027745 TGGCTTCTGTGATCTGGAACTC 60.028 50.000 0.00 0.00 0.00 3.01
471 472 1.980765 TGGCTTCTGTGATCTGGAACT 59.019 47.619 0.00 0.00 0.00 3.01
472 473 2.479566 TGGCTTCTGTGATCTGGAAC 57.520 50.000 0.00 0.00 0.00 3.62
473 474 2.877300 GCTTGGCTTCTGTGATCTGGAA 60.877 50.000 0.00 0.00 0.00 3.53
474 475 1.339438 GCTTGGCTTCTGTGATCTGGA 60.339 52.381 0.00 0.00 0.00 3.86
475 476 1.093159 GCTTGGCTTCTGTGATCTGG 58.907 55.000 0.00 0.00 0.00 3.86
476 477 1.093159 GGCTTGGCTTCTGTGATCTG 58.907 55.000 0.00 0.00 0.00 2.90
477 478 0.034670 GGGCTTGGCTTCTGTGATCT 60.035 55.000 0.00 0.00 0.00 2.75
478 479 0.034670 AGGGCTTGGCTTCTGTGATC 60.035 55.000 0.00 0.00 0.00 2.92
479 480 0.034670 GAGGGCTTGGCTTCTGTGAT 60.035 55.000 0.00 0.00 0.00 3.06
480 481 1.376466 GAGGGCTTGGCTTCTGTGA 59.624 57.895 0.00 0.00 0.00 3.58
481 482 1.676967 GGAGGGCTTGGCTTCTGTG 60.677 63.158 6.30 0.00 0.00 3.66
482 483 2.759795 GGAGGGCTTGGCTTCTGT 59.240 61.111 6.30 0.00 0.00 3.41
483 484 2.044551 GGGAGGGCTTGGCTTCTG 60.045 66.667 6.30 0.00 0.00 3.02
484 485 2.147433 CTTGGGAGGGCTTGGCTTCT 62.147 60.000 6.30 0.00 0.00 2.85
485 486 1.680314 CTTGGGAGGGCTTGGCTTC 60.680 63.158 0.00 0.00 0.00 3.86
486 487 2.442413 CTTGGGAGGGCTTGGCTT 59.558 61.111 0.00 0.00 0.00 4.35
487 488 2.860971 ACTTGGGAGGGCTTGGCT 60.861 61.111 0.00 0.00 0.00 4.75
488 489 2.677875 CACTTGGGAGGGCTTGGC 60.678 66.667 0.00 0.00 0.00 4.52
489 490 0.469892 AAACACTTGGGAGGGCTTGG 60.470 55.000 0.00 0.00 0.00 3.61
490 491 0.675633 CAAACACTTGGGAGGGCTTG 59.324 55.000 0.00 0.00 0.00 4.01
491 492 3.131850 CAAACACTTGGGAGGGCTT 57.868 52.632 0.00 0.00 0.00 4.35
492 493 4.929807 CAAACACTTGGGAGGGCT 57.070 55.556 0.00 0.00 0.00 5.19
500 501 1.021202 TGACGAAGCCCAAACACTTG 58.979 50.000 0.00 0.00 0.00 3.16
501 502 1.981256 ATGACGAAGCCCAAACACTT 58.019 45.000 0.00 0.00 0.00 3.16
502 503 2.812011 GTTATGACGAAGCCCAAACACT 59.188 45.455 0.00 0.00 0.00 3.55
503 504 2.550606 TGTTATGACGAAGCCCAAACAC 59.449 45.455 0.00 0.00 0.00 3.32
504 505 2.852449 TGTTATGACGAAGCCCAAACA 58.148 42.857 0.00 0.00 0.00 2.83
505 506 3.181500 GGATGTTATGACGAAGCCCAAAC 60.181 47.826 0.00 0.00 0.00 2.93
506 507 3.013921 GGATGTTATGACGAAGCCCAAA 58.986 45.455 0.00 0.00 0.00 3.28
507 508 2.639065 GGATGTTATGACGAAGCCCAA 58.361 47.619 0.00 0.00 0.00 4.12
508 509 1.134220 GGGATGTTATGACGAAGCCCA 60.134 52.381 0.00 0.00 34.47 5.36
509 510 1.134220 TGGGATGTTATGACGAAGCCC 60.134 52.381 0.00 0.00 34.90 5.19
510 511 2.325583 TGGGATGTTATGACGAAGCC 57.674 50.000 0.00 0.00 0.00 4.35
511 512 2.031682 GCATGGGATGTTATGACGAAGC 60.032 50.000 0.00 0.00 0.00 3.86
512 513 3.205338 TGCATGGGATGTTATGACGAAG 58.795 45.455 0.00 0.00 0.00 3.79
513 514 3.274095 TGCATGGGATGTTATGACGAA 57.726 42.857 0.00 0.00 0.00 3.85
514 515 2.942376 GTTGCATGGGATGTTATGACGA 59.058 45.455 0.00 0.00 0.00 4.20
515 516 2.033299 GGTTGCATGGGATGTTATGACG 59.967 50.000 0.00 0.00 0.00 4.35
516 517 2.362077 GGGTTGCATGGGATGTTATGAC 59.638 50.000 0.00 0.00 0.00 3.06
517 518 2.024560 TGGGTTGCATGGGATGTTATGA 60.025 45.455 0.00 0.00 0.00 2.15
518 519 2.386779 TGGGTTGCATGGGATGTTATG 58.613 47.619 0.00 0.00 0.00 1.90
519 520 2.765699 GTTGGGTTGCATGGGATGTTAT 59.234 45.455 0.00 0.00 0.00 1.89
520 521 2.175202 GTTGGGTTGCATGGGATGTTA 58.825 47.619 0.00 0.00 0.00 2.41
521 522 0.975887 GTTGGGTTGCATGGGATGTT 59.024 50.000 0.00 0.00 0.00 2.71
522 523 0.178938 TGTTGGGTTGCATGGGATGT 60.179 50.000 0.00 0.00 0.00 3.06
523 524 0.247185 GTGTTGGGTTGCATGGGATG 59.753 55.000 0.00 0.00 0.00 3.51
524 525 0.178938 TGTGTTGGGTTGCATGGGAT 60.179 50.000 0.00 0.00 0.00 3.85
525 526 0.827089 CTGTGTTGGGTTGCATGGGA 60.827 55.000 0.00 0.00 0.00 4.37
526 527 1.114722 ACTGTGTTGGGTTGCATGGG 61.115 55.000 0.00 0.00 0.00 4.00
527 528 0.752054 AACTGTGTTGGGTTGCATGG 59.248 50.000 0.00 0.00 0.00 3.66
528 529 2.600470 AAACTGTGTTGGGTTGCATG 57.400 45.000 0.00 0.00 0.00 4.06
529 530 3.640967 ACATAAACTGTGTTGGGTTGCAT 59.359 39.130 0.00 0.00 36.48 3.96
530 531 3.027412 ACATAAACTGTGTTGGGTTGCA 58.973 40.909 0.00 0.00 36.48 4.08
531 532 3.726291 ACATAAACTGTGTTGGGTTGC 57.274 42.857 0.00 0.00 36.48 4.17
532 533 5.522097 GGAAAACATAAACTGTGTTGGGTTG 59.478 40.000 0.00 0.00 39.57 3.77
533 534 5.423931 AGGAAAACATAAACTGTGTTGGGTT 59.576 36.000 0.00 0.00 39.57 4.11
534 535 4.959839 AGGAAAACATAAACTGTGTTGGGT 59.040 37.500 0.00 0.00 39.57 4.51
535 536 5.529581 AGGAAAACATAAACTGTGTTGGG 57.470 39.130 0.00 0.00 39.57 4.12
536 537 5.234116 GCAAGGAAAACATAAACTGTGTTGG 59.766 40.000 0.00 0.00 39.57 3.77
537 538 6.042143 AGCAAGGAAAACATAAACTGTGTTG 58.958 36.000 0.00 0.00 39.57 3.33
538 539 6.220726 AGCAAGGAAAACATAAACTGTGTT 57.779 33.333 0.00 0.00 38.04 3.32
539 540 5.852282 AGCAAGGAAAACATAAACTGTGT 57.148 34.783 0.00 0.00 38.39 3.72
540 541 6.272318 TCAAGCAAGGAAAACATAAACTGTG 58.728 36.000 0.00 0.00 38.39 3.66
541 542 6.463995 TCAAGCAAGGAAAACATAAACTGT 57.536 33.333 0.00 0.00 40.84 3.55
542 543 6.128742 GCATCAAGCAAGGAAAACATAAACTG 60.129 38.462 0.00 0.00 44.79 3.16
543 544 5.928264 GCATCAAGCAAGGAAAACATAAACT 59.072 36.000 0.00 0.00 44.79 2.66
544 545 6.156932 GCATCAAGCAAGGAAAACATAAAC 57.843 37.500 0.00 0.00 44.79 2.01
559 560 1.453745 TTCCGATGGGGCATCAAGC 60.454 57.895 0.00 0.00 40.54 4.01
560 561 1.103398 GGTTCCGATGGGGCATCAAG 61.103 60.000 0.00 0.00 40.54 3.02
561 562 1.077068 GGTTCCGATGGGGCATCAA 60.077 57.895 0.00 0.00 40.54 2.57
562 563 2.595095 GGTTCCGATGGGGCATCA 59.405 61.111 0.00 0.00 40.54 3.07
563 564 2.591715 CGGTTCCGATGGGGCATC 60.592 66.667 5.19 0.00 37.50 3.91
564 565 4.875713 GCGGTTCCGATGGGGCAT 62.876 66.667 15.69 0.00 34.94 4.40
567 568 4.856801 CAGGCGGTTCCGATGGGG 62.857 72.222 15.69 0.00 40.77 4.96
568 569 2.996168 GATCAGGCGGTTCCGATGGG 62.996 65.000 15.69 1.38 40.77 4.00
569 570 1.595382 GATCAGGCGGTTCCGATGG 60.595 63.158 15.69 3.10 40.77 3.51
570 571 0.877649 CTGATCAGGCGGTTCCGATG 60.878 60.000 15.38 12.10 40.77 3.84
571 572 1.043116 TCTGATCAGGCGGTTCCGAT 61.043 55.000 22.42 0.00 40.77 4.18
572 573 1.667154 CTCTGATCAGGCGGTTCCGA 61.667 60.000 22.42 0.00 40.77 4.55
573 574 1.227089 CTCTGATCAGGCGGTTCCG 60.227 63.158 22.42 6.90 40.77 4.30
574 575 0.537188 TTCTCTGATCAGGCGGTTCC 59.463 55.000 22.42 0.00 0.00 3.62
575 576 1.205893 ACTTCTCTGATCAGGCGGTTC 59.794 52.381 22.42 0.00 0.00 3.62
576 577 1.205893 GACTTCTCTGATCAGGCGGTT 59.794 52.381 22.42 4.92 0.00 4.44
577 578 0.820871 GACTTCTCTGATCAGGCGGT 59.179 55.000 22.42 15.13 0.00 5.68
578 579 0.820226 TGACTTCTCTGATCAGGCGG 59.180 55.000 22.42 12.75 0.00 6.13
579 580 1.203287 TGTGACTTCTCTGATCAGGCG 59.797 52.381 22.42 13.71 0.00 5.52
580 581 2.233431 AGTGTGACTTCTCTGATCAGGC 59.767 50.000 22.42 0.00 0.00 4.85
581 582 3.763360 AGAGTGTGACTTCTCTGATCAGG 59.237 47.826 22.42 13.07 39.23 3.86
582 583 4.458642 TGAGAGTGTGACTTCTCTGATCAG 59.541 45.833 17.07 17.07 40.53 2.90
583 584 4.217334 GTGAGAGTGTGACTTCTCTGATCA 59.783 45.833 13.45 0.00 40.53 2.92
584 585 4.217334 TGTGAGAGTGTGACTTCTCTGATC 59.783 45.833 13.45 0.00 40.53 2.92
585 586 4.148079 TGTGAGAGTGTGACTTCTCTGAT 58.852 43.478 13.45 0.00 40.53 2.90
586 587 3.555966 TGTGAGAGTGTGACTTCTCTGA 58.444 45.455 13.45 4.96 40.53 3.27
587 588 3.998099 TGTGAGAGTGTGACTTCTCTG 57.002 47.619 13.45 0.00 40.53 3.35
588 589 4.739137 GCTTTGTGAGAGTGTGACTTCTCT 60.739 45.833 15.15 12.62 42.72 3.10
589 590 3.492756 GCTTTGTGAGAGTGTGACTTCTC 59.507 47.826 9.66 9.66 0.00 2.87
590 591 3.462021 GCTTTGTGAGAGTGTGACTTCT 58.538 45.455 0.00 0.00 0.00 2.85
591 592 2.545946 GGCTTTGTGAGAGTGTGACTTC 59.454 50.000 0.00 0.00 0.00 3.01
592 593 2.565841 GGCTTTGTGAGAGTGTGACTT 58.434 47.619 0.00 0.00 0.00 3.01
593 594 1.202698 GGGCTTTGTGAGAGTGTGACT 60.203 52.381 0.00 0.00 0.00 3.41
594 595 1.202698 AGGGCTTTGTGAGAGTGTGAC 60.203 52.381 0.00 0.00 0.00 3.67
595 596 1.070758 GAGGGCTTTGTGAGAGTGTGA 59.929 52.381 0.00 0.00 0.00 3.58
596 597 1.517242 GAGGGCTTTGTGAGAGTGTG 58.483 55.000 0.00 0.00 0.00 3.82
597 598 0.034059 CGAGGGCTTTGTGAGAGTGT 59.966 55.000 0.00 0.00 0.00 3.55
598 599 0.318441 TCGAGGGCTTTGTGAGAGTG 59.682 55.000 0.00 0.00 0.00 3.51
599 600 0.605589 CTCGAGGGCTTTGTGAGAGT 59.394 55.000 3.91 0.00 0.00 3.24
600 601 0.108424 CCTCGAGGGCTTTGTGAGAG 60.108 60.000 24.62 0.00 0.00 3.20
601 602 1.975327 CCTCGAGGGCTTTGTGAGA 59.025 57.895 24.62 0.00 0.00 3.27
602 603 4.606071 CCTCGAGGGCTTTGTGAG 57.394 61.111 24.62 0.00 0.00 3.51
612 613 2.776913 GCTTCCGACTCCCTCGAGG 61.777 68.421 25.36 25.36 46.14 4.63
613 614 1.388065 ATGCTTCCGACTCCCTCGAG 61.388 60.000 5.13 5.13 46.14 4.04
614 615 1.379977 ATGCTTCCGACTCCCTCGA 60.380 57.895 0.00 0.00 46.14 4.04
615 616 1.227089 CATGCTTCCGACTCCCTCG 60.227 63.158 0.00 0.00 42.54 4.63
616 617 0.179097 GTCATGCTTCCGACTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
617 618 0.904865 TGTCATGCTTCCGACTCCCT 60.905 55.000 0.00 0.00 33.18 4.20
618 619 0.179000 ATGTCATGCTTCCGACTCCC 59.821 55.000 0.00 0.00 33.18 4.30
619 620 1.293924 CATGTCATGCTTCCGACTCC 58.706 55.000 0.00 0.00 33.18 3.85
620 621 1.134699 TCCATGTCATGCTTCCGACTC 60.135 52.381 7.35 0.00 33.18 3.36
621 622 0.904649 TCCATGTCATGCTTCCGACT 59.095 50.000 7.35 0.00 33.18 4.18
622 623 1.293924 CTCCATGTCATGCTTCCGAC 58.706 55.000 7.35 0.00 0.00 4.79
623 624 0.904649 ACTCCATGTCATGCTTCCGA 59.095 50.000 7.35 0.00 0.00 4.55
624 625 2.205074 GTACTCCATGTCATGCTTCCG 58.795 52.381 7.35 0.00 0.00 4.30
625 626 2.939103 GTGTACTCCATGTCATGCTTCC 59.061 50.000 7.35 0.00 0.00 3.46
626 627 2.939103 GGTGTACTCCATGTCATGCTTC 59.061 50.000 9.12 0.00 0.00 3.86
627 628 2.677902 CGGTGTACTCCATGTCATGCTT 60.678 50.000 14.09 0.00 0.00 3.91
628 629 1.134699 CGGTGTACTCCATGTCATGCT 60.135 52.381 14.09 0.00 0.00 3.79
629 630 1.290203 CGGTGTACTCCATGTCATGC 58.710 55.000 14.09 0.00 0.00 4.06
630 631 1.207089 ACCGGTGTACTCCATGTCATG 59.793 52.381 6.12 5.79 0.00 3.07
631 632 1.568504 ACCGGTGTACTCCATGTCAT 58.431 50.000 6.12 0.00 0.00 3.06
632 633 2.219080 TACCGGTGTACTCCATGTCA 57.781 50.000 19.93 0.00 0.00 3.58
633 634 3.454375 CAATACCGGTGTACTCCATGTC 58.546 50.000 19.93 0.00 0.00 3.06
634 635 2.419574 GCAATACCGGTGTACTCCATGT 60.420 50.000 19.93 11.85 0.00 3.21
635 636 2.210116 GCAATACCGGTGTACTCCATG 58.790 52.381 19.93 5.65 0.00 3.66
636 637 1.140252 GGCAATACCGGTGTACTCCAT 59.860 52.381 19.93 0.00 0.00 3.41
637 638 0.538118 GGCAATACCGGTGTACTCCA 59.462 55.000 19.93 0.00 0.00 3.86
638 639 0.828677 AGGCAATACCGGTGTACTCC 59.171 55.000 19.93 12.51 46.52 3.85
639 640 1.935933 CAGGCAATACCGGTGTACTC 58.064 55.000 19.93 4.06 46.52 2.59
640 641 0.107848 GCAGGCAATACCGGTGTACT 60.108 55.000 19.93 7.34 46.52 2.73
641 642 1.426041 CGCAGGCAATACCGGTGTAC 61.426 60.000 19.93 6.54 46.52 2.90
642 643 1.153529 CGCAGGCAATACCGGTGTA 60.154 57.895 19.93 0.00 46.52 2.90
643 644 2.435938 CGCAGGCAATACCGGTGT 60.436 61.111 19.93 8.05 46.52 4.16
644 645 2.916502 TAGCGCAGGCAATACCGGTG 62.917 60.000 19.93 0.65 45.87 4.94
645 646 2.727392 TAGCGCAGGCAATACCGGT 61.727 57.895 13.98 13.98 46.52 5.28
646 647 2.108157 TAGCGCAGGCAATACCGG 59.892 61.111 11.47 0.00 46.52 5.28
647 648 1.490693 CTGTAGCGCAGGCAATACCG 61.491 60.000 11.47 0.00 46.52 4.02
648 649 0.179084 TCTGTAGCGCAGGCAATACC 60.179 55.000 11.47 0.00 45.08 2.73
649 650 1.871080 ATCTGTAGCGCAGGCAATAC 58.129 50.000 11.47 2.25 45.08 1.89
650 651 2.613595 CAAATCTGTAGCGCAGGCAATA 59.386 45.455 11.47 0.00 45.08 1.90
651 652 1.402968 CAAATCTGTAGCGCAGGCAAT 59.597 47.619 11.47 0.00 45.08 3.56
652 653 0.804364 CAAATCTGTAGCGCAGGCAA 59.196 50.000 11.47 0.00 45.08 4.52
653 654 0.036483 TCAAATCTGTAGCGCAGGCA 60.036 50.000 11.47 4.08 45.08 4.75
654 655 1.262683 GATCAAATCTGTAGCGCAGGC 59.737 52.381 11.47 0.00 45.08 4.85
655 656 2.554142 TGATCAAATCTGTAGCGCAGG 58.446 47.619 11.47 0.00 45.08 4.85
656 657 4.808077 ATTGATCAAATCTGTAGCGCAG 57.192 40.909 13.09 0.00 46.34 5.18
657 658 4.511454 GGTATTGATCAAATCTGTAGCGCA 59.489 41.667 13.09 0.00 0.00 6.09
658 659 4.752101 AGGTATTGATCAAATCTGTAGCGC 59.248 41.667 13.09 0.00 0.00 5.92
659 660 5.406780 GGAGGTATTGATCAAATCTGTAGCG 59.593 44.000 13.09 0.00 0.00 4.26
660 661 6.529220 AGGAGGTATTGATCAAATCTGTAGC 58.471 40.000 13.09 9.40 0.00 3.58
661 662 8.970859 AAAGGAGGTATTGATCAAATCTGTAG 57.029 34.615 13.09 0.00 0.00 2.74
662 663 9.396022 GAAAAGGAGGTATTGATCAAATCTGTA 57.604 33.333 13.09 0.00 0.00 2.74
663 664 8.112183 AGAAAAGGAGGTATTGATCAAATCTGT 58.888 33.333 13.09 0.00 0.00 3.41
664 665 8.404000 CAGAAAAGGAGGTATTGATCAAATCTG 58.596 37.037 13.09 9.18 0.00 2.90
665 666 7.067981 GCAGAAAAGGAGGTATTGATCAAATCT 59.932 37.037 13.09 9.95 0.00 2.40
666 667 7.148018 TGCAGAAAAGGAGGTATTGATCAAATC 60.148 37.037 13.09 8.32 0.00 2.17
667 668 6.664816 TGCAGAAAAGGAGGTATTGATCAAAT 59.335 34.615 13.09 4.08 0.00 2.32
668 669 6.009589 TGCAGAAAAGGAGGTATTGATCAAA 58.990 36.000 13.09 0.00 0.00 2.69
669 670 5.569355 TGCAGAAAAGGAGGTATTGATCAA 58.431 37.500 11.26 11.26 0.00 2.57
670 671 5.178096 TGCAGAAAAGGAGGTATTGATCA 57.822 39.130 0.00 0.00 0.00 2.92
671 672 4.036144 GCTGCAGAAAAGGAGGTATTGATC 59.964 45.833 20.43 0.00 0.00 2.92
672 673 3.950395 GCTGCAGAAAAGGAGGTATTGAT 59.050 43.478 20.43 0.00 0.00 2.57
673 674 3.244875 TGCTGCAGAAAAGGAGGTATTGA 60.245 43.478 20.43 0.00 0.00 2.57
674 675 3.084039 TGCTGCAGAAAAGGAGGTATTG 58.916 45.455 20.43 0.00 0.00 1.90
675 676 3.009473 TCTGCTGCAGAAAAGGAGGTATT 59.991 43.478 28.72 0.00 37.57 1.89
676 677 2.573462 TCTGCTGCAGAAAAGGAGGTAT 59.427 45.455 28.72 0.00 37.57 2.73
677 678 1.977854 TCTGCTGCAGAAAAGGAGGTA 59.022 47.619 28.72 3.01 37.57 3.08
678 679 0.767375 TCTGCTGCAGAAAAGGAGGT 59.233 50.000 28.72 0.00 37.57 3.85
679 680 2.125773 ATCTGCTGCAGAAAAGGAGG 57.874 50.000 33.31 4.91 44.04 4.30
680 681 5.633830 TTTTATCTGCTGCAGAAAAGGAG 57.366 39.130 33.31 5.67 44.04 3.69
681 682 4.082571 GCTTTTATCTGCTGCAGAAAAGGA 60.083 41.667 34.84 22.24 44.04 3.36
682 683 4.082354 AGCTTTTATCTGCTGCAGAAAAGG 60.082 41.667 34.84 30.31 44.04 3.11
683 684 5.056894 AGCTTTTATCTGCTGCAGAAAAG 57.943 39.130 32.67 32.67 44.04 2.27
684 685 5.242393 AGAAGCTTTTATCTGCTGCAGAAAA 59.758 36.000 33.31 26.62 44.04 2.29
685 686 4.763793 AGAAGCTTTTATCTGCTGCAGAAA 59.236 37.500 33.31 24.07 44.04 2.52
686 687 4.330250 AGAAGCTTTTATCTGCTGCAGAA 58.670 39.130 33.31 20.27 44.04 3.02
687 688 3.937706 GAGAAGCTTTTATCTGCTGCAGA 59.062 43.478 32.07 32.07 44.99 4.26
688 689 3.065095 GGAGAAGCTTTTATCTGCTGCAG 59.935 47.826 23.31 23.31 39.71 4.41
689 690 3.012518 GGAGAAGCTTTTATCTGCTGCA 58.987 45.455 0.00 0.88 39.71 4.41
690 691 2.031437 CGGAGAAGCTTTTATCTGCTGC 59.969 50.000 0.00 0.00 39.71 5.25
691 692 3.265791 ACGGAGAAGCTTTTATCTGCTG 58.734 45.455 0.00 0.00 39.71 4.41
692 693 3.526534 GACGGAGAAGCTTTTATCTGCT 58.473 45.455 0.00 0.00 41.82 4.24
693 694 2.609916 GGACGGAGAAGCTTTTATCTGC 59.390 50.000 0.00 0.00 0.00 4.26
694 695 3.861840 TGGACGGAGAAGCTTTTATCTG 58.138 45.455 0.00 7.44 0.00 2.90
695 696 4.443598 GGATGGACGGAGAAGCTTTTATCT 60.444 45.833 0.00 0.00 0.00 1.98
696 697 3.810386 GGATGGACGGAGAAGCTTTTATC 59.190 47.826 0.00 0.00 0.00 1.75
697 698 3.433740 GGGATGGACGGAGAAGCTTTTAT 60.434 47.826 0.00 0.00 0.00 1.40
698 699 2.093128 GGGATGGACGGAGAAGCTTTTA 60.093 50.000 0.00 0.00 0.00 1.52
699 700 1.340114 GGGATGGACGGAGAAGCTTTT 60.340 52.381 0.00 0.00 0.00 2.27
700 701 0.253327 GGGATGGACGGAGAAGCTTT 59.747 55.000 0.00 0.00 0.00 3.51
701 702 1.627297 GGGGATGGACGGAGAAGCTT 61.627 60.000 0.00 0.00 0.00 3.74
702 703 2.066999 GGGGATGGACGGAGAAGCT 61.067 63.158 0.00 0.00 0.00 3.74
703 704 0.759436 TAGGGGATGGACGGAGAAGC 60.759 60.000 0.00 0.00 0.00 3.86
704 705 1.413077 GTTAGGGGATGGACGGAGAAG 59.587 57.143 0.00 0.00 0.00 2.85
705 706 1.492764 GTTAGGGGATGGACGGAGAA 58.507 55.000 0.00 0.00 0.00 2.87
706 707 0.398098 GGTTAGGGGATGGACGGAGA 60.398 60.000 0.00 0.00 0.00 3.71
707 708 0.398664 AGGTTAGGGGATGGACGGAG 60.399 60.000 0.00 0.00 0.00 4.63
708 709 0.043637 AAGGTTAGGGGATGGACGGA 59.956 55.000 0.00 0.00 0.00 4.69
709 710 0.468648 GAAGGTTAGGGGATGGACGG 59.531 60.000 0.00 0.00 0.00 4.79
710 711 1.413077 GAGAAGGTTAGGGGATGGACG 59.587 57.143 0.00 0.00 0.00 4.79
711 712 1.769465 GGAGAAGGTTAGGGGATGGAC 59.231 57.143 0.00 0.00 0.00 4.02
712 713 1.345112 GGGAGAAGGTTAGGGGATGGA 60.345 57.143 0.00 0.00 0.00 3.41
713 714 1.141185 GGGAGAAGGTTAGGGGATGG 58.859 60.000 0.00 0.00 0.00 3.51
714 715 1.893315 TGGGAGAAGGTTAGGGGATG 58.107 55.000 0.00 0.00 0.00 3.51
715 716 2.918774 ATGGGAGAAGGTTAGGGGAT 57.081 50.000 0.00 0.00 0.00 3.85
716 717 2.319747 TGTATGGGAGAAGGTTAGGGGA 59.680 50.000 0.00 0.00 0.00 4.81
717 718 2.438392 GTGTATGGGAGAAGGTTAGGGG 59.562 54.545 0.00 0.00 0.00 4.79
718 719 2.102588 CGTGTATGGGAGAAGGTTAGGG 59.897 54.545 0.00 0.00 0.00 3.53
719 720 3.028850 TCGTGTATGGGAGAAGGTTAGG 58.971 50.000 0.00 0.00 0.00 2.69
720 721 4.585162 AGATCGTGTATGGGAGAAGGTTAG 59.415 45.833 0.00 0.00 0.00 2.34
721 722 4.543689 AGATCGTGTATGGGAGAAGGTTA 58.456 43.478 0.00 0.00 0.00 2.85
722 723 3.375699 AGATCGTGTATGGGAGAAGGTT 58.624 45.455 0.00 0.00 0.00 3.50
723 724 2.959707 GAGATCGTGTATGGGAGAAGGT 59.040 50.000 0.00 0.00 0.00 3.50
724 725 2.030717 CGAGATCGTGTATGGGAGAAGG 60.031 54.545 0.00 0.00 34.11 3.46
725 726 3.275400 CGAGATCGTGTATGGGAGAAG 57.725 52.381 0.00 0.00 34.11 2.85
738 739 4.214545 AGCAAGAGAATACCTACGAGATCG 59.785 45.833 0.00 0.00 46.33 3.69
739 740 5.699097 AGCAAGAGAATACCTACGAGATC 57.301 43.478 0.00 0.00 0.00 2.75
740 741 6.300703 ACTAGCAAGAGAATACCTACGAGAT 58.699 40.000 0.00 0.00 0.00 2.75
741 742 5.682659 ACTAGCAAGAGAATACCTACGAGA 58.317 41.667 0.00 0.00 0.00 4.04
742 743 7.675962 ATACTAGCAAGAGAATACCTACGAG 57.324 40.000 0.00 0.00 0.00 4.18
743 744 7.937942 AGAATACTAGCAAGAGAATACCTACGA 59.062 37.037 0.00 0.00 0.00 3.43
744 745 8.101654 AGAATACTAGCAAGAGAATACCTACG 57.898 38.462 0.00 0.00 0.00 3.51
747 748 8.852135 GTGTAGAATACTAGCAAGAGAATACCT 58.148 37.037 0.00 0.00 43.54 3.08
748 749 8.630917 TGTGTAGAATACTAGCAAGAGAATACC 58.369 37.037 0.00 0.00 43.54 2.73
1248 1326 6.436218 ACTTCTCGGCTTTTACCCATTTTTAT 59.564 34.615 0.00 0.00 0.00 1.40
1805 1905 3.687125 GGGTTCGAATCCCTTTCTTTCT 58.313 45.455 17.16 0.00 41.58 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.