Multiple sequence alignment - TraesCS2D01G020200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G020200 chr2D 100.000 5524 0 0 1 5524 9634435 9639958 0.000000e+00 10202.0
1 TraesCS2D01G020200 chr2D 90.354 508 47 2 3505 4011 9623641 9624147 0.000000e+00 665.0
2 TraesCS2D01G020200 chr2D 83.929 672 77 19 1591 2254 9622035 9622683 1.020000e-171 614.0
3 TraesCS2D01G020200 chr2D 80.995 784 115 21 4030 4790 9624138 9624910 4.770000e-165 592.0
4 TraesCS2D01G020200 chr2D 89.407 236 14 5 2537 2770 9636754 9636980 2.520000e-73 287.0
5 TraesCS2D01G020200 chr2D 89.407 236 14 5 2320 2546 9636971 9637204 2.520000e-73 287.0
6 TraesCS2D01G020200 chr2D 85.714 98 9 1 2892 2984 178280734 178280831 1.270000e-16 99.0
7 TraesCS2D01G020200 chr2D 84.694 98 10 4 2892 2984 417350227 417350130 5.890000e-15 93.5
8 TraesCS2D01G020200 chr2A 92.798 4110 164 55 3 4017 8718510 8722582 0.000000e+00 5829.0
9 TraesCS2D01G020200 chr2A 93.232 1123 56 10 4025 5132 8722563 8723680 0.000000e+00 1635.0
10 TraesCS2D01G020200 chr2A 91.608 286 22 2 5139 5422 44364536 44364821 1.440000e-105 394.0
11 TraesCS2D01G020200 chr2A 88.703 239 13 4 2537 2770 8720855 8721084 4.210000e-71 279.0
12 TraesCS2D01G020200 chr2A 94.595 111 6 0 5414 5524 8725411 8725521 7.360000e-39 172.0
13 TraesCS2D01G020200 chr2B 86.543 810 73 21 698 1493 12948455 12949242 0.000000e+00 859.0
14 TraesCS2D01G020200 chr2B 92.074 593 41 3 3430 4017 12951455 12952046 0.000000e+00 830.0
15 TraesCS2D01G020200 chr2B 85.767 808 79 19 698 1492 11463580 11462796 0.000000e+00 822.0
16 TraesCS2D01G020200 chr2B 89.292 607 54 6 3403 4001 11460039 11459436 0.000000e+00 750.0
17 TraesCS2D01G020200 chr2B 86.202 703 58 26 4030 4710 12952032 12952717 0.000000e+00 725.0
18 TraesCS2D01G020200 chr2B 84.477 612 49 18 168 755 11464178 11463589 3.740000e-156 562.0
19 TraesCS2D01G020200 chr2B 83.117 616 79 15 4050 4651 11459422 11458818 6.300000e-149 538.0
20 TraesCS2D01G020200 chr2B 80.105 759 113 25 4027 4760 12592343 12593088 1.050000e-146 531.0
21 TraesCS2D01G020200 chr2B 84.569 499 50 20 1765 2243 12949811 12950302 2.330000e-128 470.0
22 TraesCS2D01G020200 chr2B 93.190 279 17 2 5137 5414 133123231 133122954 5.150000e-110 409.0
23 TraesCS2D01G020200 chr2B 92.096 291 20 3 5137 5426 339116049 339116337 1.850000e-109 407.0
24 TraesCS2D01G020200 chr2B 91.815 281 17 4 1963 2243 11461858 11461584 2.410000e-103 387.0
25 TraesCS2D01G020200 chr2B 86.740 181 18 6 1547 1726 11462552 11462377 4.370000e-46 196.0
26 TraesCS2D01G020200 chr2B 85.876 177 25 0 3835 4011 12592186 12592362 7.310000e-44 189.0
27 TraesCS2D01G020200 chr2B 87.425 167 15 6 1547 1713 12949485 12949645 2.630000e-43 187.0
28 TraesCS2D01G020200 chr2B 81.026 195 13 14 1 173 12947545 12947737 3.470000e-27 134.0
29 TraesCS2D01G020200 chr7B 76.402 1123 187 46 3448 4535 71579305 71578226 8.150000e-148 534.0
30 TraesCS2D01G020200 chr7B 85.915 213 21 4 1996 2199 71590864 71590652 9.320000e-53 219.0
31 TraesCS2D01G020200 chr7B 82.883 111 10 8 2884 2987 230218305 230218413 2.120000e-14 91.6
32 TraesCS2D01G020200 chr3B 93.863 277 16 1 5139 5414 538630912 538630636 3.080000e-112 416.0
33 TraesCS2D01G020200 chr1B 93.548 279 16 2 5141 5418 510294841 510295118 1.110000e-111 414.0
34 TraesCS2D01G020200 chr1B 96.875 32 0 1 1499 1529 632161780 632161811 1.000000e-02 52.8
35 TraesCS2D01G020200 chr7A 92.908 282 18 2 5134 5414 245744416 245744696 5.150000e-110 409.0
36 TraesCS2D01G020200 chr7A 78.906 512 72 17 3446 3950 117085315 117084833 1.160000e-81 315.0
37 TraesCS2D01G020200 chr7A 84.507 213 24 6 1996 2199 117086906 117086694 9.380000e-48 202.0
38 TraesCS2D01G020200 chr7A 91.129 124 11 0 1773 1896 117087215 117087092 9.520000e-38 169.0
39 TraesCS2D01G020200 chr7A 80.930 215 32 2 1994 2199 63908010 63907796 1.590000e-35 161.0
40 TraesCS2D01G020200 chr5A 92.632 285 20 1 5135 5418 457547848 457547564 5.150000e-110 409.0
41 TraesCS2D01G020200 chr5A 83.568 213 26 4 1997 2200 689917877 689917665 2.030000e-44 191.0
42 TraesCS2D01G020200 chr1A 92.388 289 17 5 5138 5423 317869859 317869573 1.850000e-109 407.0
43 TraesCS2D01G020200 chr1A 92.857 280 18 2 5136 5414 329183445 329183723 6.660000e-109 405.0
44 TraesCS2D01G020200 chr4D 82.895 228 29 5 1996 2213 505435163 505434936 4.370000e-46 196.0
45 TraesCS2D01G020200 chr4D 84.158 101 11 2 2891 2986 428582924 428582824 5.890000e-15 93.5
46 TraesCS2D01G020200 chr4B 81.579 228 32 5 1996 2213 652290343 652290116 4.400000e-41 180.0
47 TraesCS2D01G020200 chr4B 85.294 102 10 1 2888 2984 597480496 597480597 3.520000e-17 100.0
48 TraesCS2D01G020200 chr5B 81.281 203 33 5 327 528 668532954 668533152 5.730000e-35 159.0
49 TraesCS2D01G020200 chr7D 76.488 336 42 18 3444 3772 112128888 112128583 1.240000e-31 148.0
50 TraesCS2D01G020200 chr7D 74.671 304 58 17 357 647 29601848 29602145 3.500000e-22 117.0
51 TraesCS2D01G020200 chr6D 85.849 106 8 3 2885 2984 467773471 467773575 7.570000e-19 106.0
52 TraesCS2D01G020200 chr5D 86.598 97 8 1 2892 2983 460172373 460172469 9.790000e-18 102.0
53 TraesCS2D01G020200 chr3D 85.714 98 9 1 2892 2984 27518901 27518998 1.270000e-16 99.0
54 TraesCS2D01G020200 chr3D 96.970 33 1 0 1507 1539 567908514 567908482 7.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G020200 chr2D 9634435 9639958 5523 False 3592.000000 10202 92.938000 1 5524 3 chr2D.!!$F3 5523
1 TraesCS2D01G020200 chr2D 9622035 9624910 2875 False 623.666667 665 85.092667 1591 4790 3 chr2D.!!$F2 3199
2 TraesCS2D01G020200 chr2A 8718510 8725521 7011 False 1978.750000 5829 92.332000 3 5524 4 chr2A.!!$F2 5521
3 TraesCS2D01G020200 chr2B 11458818 11464178 5360 True 542.500000 822 86.868000 168 4651 6 chr2B.!!$R2 4483
4 TraesCS2D01G020200 chr2B 12947545 12952717 5172 False 534.166667 859 86.306500 1 4710 6 chr2B.!!$F3 4709
5 TraesCS2D01G020200 chr2B 12592186 12593088 902 False 360.000000 531 82.990500 3835 4760 2 chr2B.!!$F2 925
6 TraesCS2D01G020200 chr7B 71578226 71579305 1079 True 534.000000 534 76.402000 3448 4535 1 chr7B.!!$R1 1087
7 TraesCS2D01G020200 chr7A 117084833 117087215 2382 True 228.666667 315 84.847333 1773 3950 3 chr7A.!!$R2 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 428 0.389687 AAGAGAGCAGACGAGCAAGC 60.390 55.0 0.00 0.0 36.85 4.01 F
1030 1336 0.393537 CCTGGGCATCCACTCACTTC 60.394 60.0 0.00 0.0 38.32 3.01 F
2384 3380 0.180406 AATACTAGTGGGGCAAGCGG 59.820 55.0 5.39 0.0 0.00 5.52 F
2385 3381 2.325393 ATACTAGTGGGGCAAGCGGC 62.325 60.0 5.39 0.0 43.74 6.53 F
4156 6849 0.250234 AGATTTGCACGCTGAGCCTA 59.750 50.0 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1446 1.228063 GCCGGCATCCATGATCACT 60.228 57.895 24.80 0.00 0.00 3.41 R
2540 3543 0.179009 ACTGAGTGCCTGCAACACAT 60.179 50.000 18.73 6.71 40.59 3.21 R
3832 6488 1.901591 CTTCACAGGGTGCACTCAAT 58.098 50.000 21.13 2.64 32.98 2.57 R
4384 7104 2.328099 GGCTCCAAACCTGCACTCG 61.328 63.158 0.00 0.00 0.00 4.18 R
5132 7886 0.400213 TACAACCAGCCTCAAGTGGG 59.600 55.000 0.00 0.00 38.25 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.629252 GTCAACAGTCTTTTGATTCTTCGAAC 59.371 38.462 4.78 0.00 35.47 3.95
71 72 4.703897 TGATTCTTCGAACCAGACAAAGT 58.296 39.130 0.00 0.00 0.00 2.66
75 76 2.526304 TCGAACCAGACAAAGTCAGG 57.474 50.000 7.00 7.00 43.47 3.86
76 77 2.036387 TCGAACCAGACAAAGTCAGGA 58.964 47.619 14.43 0.00 40.93 3.86
78 79 3.071023 TCGAACCAGACAAAGTCAGGAAT 59.929 43.478 14.43 4.03 40.93 3.01
81 82 5.566826 CGAACCAGACAAAGTCAGGAATAGA 60.567 44.000 14.43 0.00 40.93 1.98
82 83 5.413309 ACCAGACAAAGTCAGGAATAGAG 57.587 43.478 14.43 0.00 40.93 2.43
84 85 5.723887 ACCAGACAAAGTCAGGAATAGAGAT 59.276 40.000 14.43 0.00 40.93 2.75
85 86 6.897966 ACCAGACAAAGTCAGGAATAGAGATA 59.102 38.462 14.43 0.00 40.93 1.98
86 87 7.069331 ACCAGACAAAGTCAGGAATAGAGATAG 59.931 40.741 14.43 0.00 40.93 2.08
87 88 7.286546 CCAGACAAAGTCAGGAATAGAGATAGA 59.713 40.741 2.76 0.00 40.93 1.98
88 89 8.352201 CAGACAAAGTCAGGAATAGAGATAGAG 58.648 40.741 0.00 0.00 34.60 2.43
89 90 8.278639 AGACAAAGTCAGGAATAGAGATAGAGA 58.721 37.037 0.00 0.00 34.60 3.10
90 91 8.463930 ACAAAGTCAGGAATAGAGATAGAGAG 57.536 38.462 0.00 0.00 0.00 3.20
92 93 8.786898 CAAAGTCAGGAATAGAGATAGAGAGAG 58.213 40.741 0.00 0.00 0.00 3.20
93 94 6.476378 AGTCAGGAATAGAGATAGAGAGAGC 58.524 44.000 0.00 0.00 0.00 4.09
94 95 5.648092 GTCAGGAATAGAGATAGAGAGAGCC 59.352 48.000 0.00 0.00 0.00 4.70
95 96 4.635765 CAGGAATAGAGATAGAGAGAGCCG 59.364 50.000 0.00 0.00 0.00 5.52
96 97 4.288626 AGGAATAGAGATAGAGAGAGCCGT 59.711 45.833 0.00 0.00 0.00 5.68
128 151 4.371417 CACCACATGGCAGGGGCT 62.371 66.667 3.46 0.00 40.87 5.19
144 167 2.659428 GGGCTCCATTTGCAAGATACT 58.341 47.619 0.00 0.00 0.00 2.12
152 175 7.496529 TCCATTTGCAAGATACTATAGTTGC 57.503 36.000 16.88 16.88 44.53 4.17
194 343 2.162754 GGTACGTTCGTGCATCCCG 61.163 63.158 14.26 0.00 0.00 5.14
214 363 4.787871 GACAGCTTGCTGTCCAGT 57.212 55.556 33.32 12.35 45.72 4.00
215 364 3.914984 GACAGCTTGCTGTCCAGTA 57.085 52.632 33.32 0.00 45.72 2.74
216 365 1.433534 GACAGCTTGCTGTCCAGTAC 58.566 55.000 33.32 16.29 45.72 2.73
217 366 1.001406 GACAGCTTGCTGTCCAGTACT 59.999 52.381 33.32 10.40 45.72 2.73
279 428 0.389687 AAGAGAGCAGACGAGCAAGC 60.390 55.000 0.00 0.00 36.85 4.01
318 467 4.394795 CTTCACGGAGCATAAACTTTTCG 58.605 43.478 0.00 0.00 0.00 3.46
391 540 6.820335 TGCATAAGTACTTCTAGATGCACAT 58.180 36.000 27.97 6.94 43.95 3.21
447 596 5.929697 TTTGATGTGAGCTGTACAGAAAG 57.070 39.130 27.08 0.72 0.00 2.62
459 608 6.712095 AGCTGTACAGAAAGACAAAATCATGA 59.288 34.615 27.08 0.00 0.00 3.07
462 611 7.648142 TGTACAGAAAGACAAAATCATGAACC 58.352 34.615 0.00 0.00 0.00 3.62
545 694 5.519927 GCTTGCACGAAAATATATTTTGCCT 59.480 36.000 24.60 4.17 39.86 4.75
889 1190 3.535590 CCTCCCCTAGATCTCTCCCATAT 59.464 52.174 0.00 0.00 0.00 1.78
1030 1336 0.393537 CCTGGGCATCCACTCACTTC 60.394 60.000 0.00 0.00 38.32 3.01
1060 1369 2.364317 TCCTCCTGGCCTCTTCGG 60.364 66.667 3.32 0.00 0.00 4.30
1080 1389 2.016961 GGCGTCTACCGACATCGTA 58.983 57.895 0.00 0.00 46.74 3.43
1088 1397 1.216977 CCGACATCGTACTTGGCCA 59.783 57.895 0.00 0.00 37.74 5.36
1137 1446 3.384532 GGACCGGGGAAGTACGCA 61.385 66.667 6.32 0.00 0.00 5.24
1304 1613 5.516696 CCGTTCATGTGTTCATCTACACTAG 59.483 44.000 8.20 0.00 46.67 2.57
2141 3059 0.539986 GCTCCCGTGGTTAAGGATCA 59.460 55.000 0.00 0.00 0.00 2.92
2184 3102 7.223260 TCTCAAAGGAAGAGATTACAACGTA 57.777 36.000 0.00 0.00 37.22 3.57
2278 3207 1.461461 GGCCCTATGGTAGCTCCCA 60.461 63.158 0.00 0.00 39.27 4.37
2337 3330 2.080654 TAAAAAGGGTTGCAGGCACT 57.919 45.000 0.00 0.00 43.88 4.40
2338 3331 0.752658 AAAAAGGGTTGCAGGCACTC 59.247 50.000 0.00 0.00 34.60 3.51
2340 3333 0.825010 AAAGGGTTGCAGGCACTCTG 60.825 55.000 0.00 0.00 46.03 3.35
2342 3335 1.529244 GGGTTGCAGGCACTCTGTT 60.529 57.895 0.00 0.00 45.08 3.16
2343 3336 1.109323 GGGTTGCAGGCACTCTGTTT 61.109 55.000 0.00 0.00 45.08 2.83
2345 3341 1.953686 GGTTGCAGGCACTCTGTTTAA 59.046 47.619 0.00 0.00 45.08 1.52
2349 3345 4.040445 TGCAGGCACTCTGTTTAAAAAC 57.960 40.909 0.00 0.00 45.08 2.43
2350 3346 3.445450 TGCAGGCACTCTGTTTAAAAACA 59.555 39.130 7.95 7.95 45.08 2.83
2351 3347 4.081972 TGCAGGCACTCTGTTTAAAAACAA 60.082 37.500 9.39 1.42 42.76 2.83
2353 3349 6.183360 TGCAGGCACTCTGTTTAAAAACAATA 60.183 34.615 9.39 1.10 42.76 1.90
2356 3352 8.299570 CAGGCACTCTGTTTAAAAACAATAGAT 58.700 33.333 17.76 6.08 42.76 1.98
2377 3373 7.067496 AGATGTGTGATAAATACTAGTGGGG 57.933 40.000 5.39 0.00 0.00 4.96
2379 3375 4.471747 TGTGTGATAAATACTAGTGGGGCA 59.528 41.667 5.39 0.00 0.00 5.36
2381 3377 5.527582 GTGTGATAAATACTAGTGGGGCAAG 59.472 44.000 5.39 0.00 0.00 4.01
2382 3378 4.515567 GTGATAAATACTAGTGGGGCAAGC 59.484 45.833 5.39 0.00 0.00 4.01
2383 3379 2.038387 AAATACTAGTGGGGCAAGCG 57.962 50.000 5.39 0.00 0.00 4.68
2384 3380 0.180406 AATACTAGTGGGGCAAGCGG 59.820 55.000 5.39 0.00 0.00 5.52
2385 3381 2.325393 ATACTAGTGGGGCAAGCGGC 62.325 60.000 5.39 0.00 43.74 6.53
2400 3396 3.601443 AGCGGCATGAGAGGAATATAC 57.399 47.619 1.45 0.00 0.00 1.47
2401 3397 2.899900 AGCGGCATGAGAGGAATATACA 59.100 45.455 1.45 0.00 0.00 2.29
2406 3402 5.406780 CGGCATGAGAGGAATATACAAAGTC 59.593 44.000 0.00 0.00 0.00 3.01
2407 3403 5.406780 GGCATGAGAGGAATATACAAAGTCG 59.593 44.000 0.00 0.00 0.00 4.18
2412 3415 7.837863 TGAGAGGAATATACAAAGTCGAACTT 58.162 34.615 0.00 0.00 40.80 2.66
2424 3427 6.039270 ACAAAGTCGAACTTTCAATTGATCCA 59.961 34.615 9.40 0.00 44.47 3.41
2427 3430 5.939883 AGTCGAACTTTCAATTGATCCATCA 59.060 36.000 9.40 0.00 34.44 3.07
2429 3432 6.092670 GTCGAACTTTCAATTGATCCATCAGA 59.907 38.462 9.40 1.83 38.19 3.27
2430 3433 6.825213 TCGAACTTTCAATTGATCCATCAGAT 59.175 34.615 9.40 0.00 38.19 2.90
2442 3445 6.557291 GATCCATCAGATCTGGAATCAAAC 57.443 41.667 22.42 4.76 46.85 2.93
2444 3447 5.818887 TCCATCAGATCTGGAATCAAACAA 58.181 37.500 22.42 0.00 39.83 2.83
2445 3448 5.884232 TCCATCAGATCTGGAATCAAACAAG 59.116 40.000 22.42 0.00 39.83 3.16
2446 3449 5.884232 CCATCAGATCTGGAATCAAACAAGA 59.116 40.000 22.42 0.00 35.70 3.02
2447 3450 6.546403 CCATCAGATCTGGAATCAAACAAGAT 59.454 38.462 22.42 1.05 35.70 2.40
2449 3452 7.387119 TCAGATCTGGAATCAAACAAGATTG 57.613 36.000 22.42 0.00 38.30 2.67
2452 3455 8.129840 CAGATCTGGAATCAAACAAGATTGATC 58.870 37.037 15.38 0.00 46.57 2.92
2455 3458 6.092670 TCTGGAATCAAACAAGATTGATCGTC 59.907 38.462 6.11 2.33 46.57 4.20
2456 3459 5.123820 TGGAATCAAACAAGATTGATCGTCC 59.876 40.000 12.96 12.96 46.57 4.79
2458 3461 6.127897 GGAATCAAACAAGATTGATCGTCCTT 60.128 38.462 12.73 0.00 46.57 3.36
2459 3462 7.065803 GGAATCAAACAAGATTGATCGTCCTTA 59.934 37.037 12.73 0.00 46.57 2.69
2460 3463 8.511604 AATCAAACAAGATTGATCGTCCTTAT 57.488 30.769 6.11 0.00 46.57 1.73
2462 3465 9.784531 ATCAAACAAGATTGATCGTCCTTATAT 57.215 29.630 0.00 0.00 44.64 0.86
2463 3466 9.613428 TCAAACAAGATTGATCGTCCTTATATT 57.387 29.630 0.00 0.00 34.50 1.28
2466 3469 8.383318 ACAAGATTGATCGTCCTTATATTTGG 57.617 34.615 0.00 0.00 0.00 3.28
2467 3470 7.993183 ACAAGATTGATCGTCCTTATATTTGGT 59.007 33.333 0.00 0.00 0.00 3.67
2469 3472 8.383318 AGATTGATCGTCCTTATATTTGGTTG 57.617 34.615 0.00 0.00 0.00 3.77
2470 3473 6.935741 TTGATCGTCCTTATATTTGGTTGG 57.064 37.500 0.00 0.00 0.00 3.77
2474 3477 5.010933 TCGTCCTTATATTTGGTTGGCAAA 58.989 37.500 0.00 0.00 0.00 3.68
2475 3478 5.654650 TCGTCCTTATATTTGGTTGGCAAAT 59.345 36.000 0.00 0.00 36.39 2.32
2476 3479 6.153680 TCGTCCTTATATTTGGTTGGCAAATT 59.846 34.615 0.00 0.00 34.51 1.82
2479 3482 9.660180 GTCCTTATATTTGGTTGGCAAATTTAA 57.340 29.630 0.00 0.00 34.51 1.52
2487 3490 8.964476 TTTGGTTGGCAAATTTAAATACAAGA 57.036 26.923 0.00 0.00 0.00 3.02
2488 3491 9.566432 TTTGGTTGGCAAATTTAAATACAAGAT 57.434 25.926 0.00 0.00 0.00 2.40
2490 3493 9.868277 TGGTTGGCAAATTTAAATACAAGATAG 57.132 29.630 0.00 0.00 0.00 2.08
2543 3546 9.905713 TTAGAATATAGAGAGGTGCAAAAATGT 57.094 29.630 0.00 0.00 0.00 2.71
2544 3547 8.218338 AGAATATAGAGAGGTGCAAAAATGTG 57.782 34.615 0.00 0.00 0.00 3.21
2572 3575 6.363357 GCAGGCACTCAGTTTAAAAACAATAG 59.637 38.462 8.21 4.82 37.85 1.73
2597 3600 4.056050 GTGTGATAAATACTAGTGGGGCG 58.944 47.826 5.39 0.00 0.00 6.13
2599 3602 4.406326 TGTGATAAATACTAGTGGGGCGAA 59.594 41.667 5.39 0.00 0.00 4.70
2624 3627 6.823689 ACGGCATGAGAAGAATATACAAAGTT 59.176 34.615 0.00 0.00 0.00 2.66
2900 4148 8.135529 TCAGAACTAATAACATGTACTCCATCG 58.864 37.037 0.00 0.00 0.00 3.84
2912 4160 3.433306 ACTCCATCGTTCCCAAAATGA 57.567 42.857 0.00 0.00 0.00 2.57
2922 4170 4.554723 CGTTCCCAAAATGAGTGACTCAAC 60.555 45.833 20.26 9.35 44.04 3.18
2929 4177 4.558538 AATGAGTGACTCAACTTTGCAC 57.441 40.909 20.26 0.00 44.04 4.57
2932 4180 3.755905 TGAGTGACTCAACTTTGCACAAA 59.244 39.130 13.74 0.00 37.57 2.83
2933 4181 4.096732 AGTGACTCAACTTTGCACAAAC 57.903 40.909 0.00 0.00 32.16 2.93
2936 4184 4.923281 GTGACTCAACTTTGCACAAACTTT 59.077 37.500 0.00 0.00 0.00 2.66
2940 4188 7.328249 TGACTCAACTTTGCACAAACTTTAAAG 59.672 33.333 13.76 13.76 35.18 1.85
2941 4189 7.151976 ACTCAACTTTGCACAAACTTTAAAGT 58.848 30.769 15.22 15.22 41.74 2.66
3049 4297 9.645059 CTAGTGGAAGATGTGTGGTATATTATG 57.355 37.037 0.00 0.00 0.00 1.90
3157 4962 9.628500 AGTTTTAGAATTCTATCGGGCTAAAAT 57.372 29.630 15.82 8.05 38.94 1.82
3604 6260 2.517959 TCAAGGCAAAGAATGGACCAG 58.482 47.619 0.00 0.00 0.00 4.00
3645 6301 5.288472 GCGTGGATTCATTGGTAATTCAAAC 59.712 40.000 0.00 0.00 0.00 2.93
3832 6488 3.153919 GGATGTGACCAAGGCACTAAAA 58.846 45.455 1.72 0.00 38.49 1.52
4064 6757 3.195396 GTGTCTCTCTTTCTGGCTGAGAT 59.805 47.826 0.00 0.00 36.43 2.75
4156 6849 0.250234 AGATTTGCACGCTGAGCCTA 59.750 50.000 0.00 0.00 0.00 3.93
4353 7073 4.158209 TGGCAATGTGATGATAACCAGTTG 59.842 41.667 0.00 0.00 0.00 3.16
4384 7104 7.337689 TGGTTTAGCTGATATGAATCATATGGC 59.662 37.037 19.38 19.97 41.29 4.40
4404 7124 1.228367 AGTGCAGGTTTGGAGCCAG 60.228 57.895 0.00 0.00 0.00 4.85
4654 7381 7.148137 GGATAAATATTGGGTAAACGGCATAGG 60.148 40.741 0.00 0.00 0.00 2.57
4728 7467 7.381766 TGATTGATGAAGTCACCATAAACAG 57.618 36.000 0.00 0.00 36.32 3.16
4729 7468 7.167535 TGATTGATGAAGTCACCATAAACAGA 58.832 34.615 0.00 0.00 36.32 3.41
4749 7488 7.295952 ACAGATCGTTGTCAATAGAAATGTC 57.704 36.000 0.00 0.00 0.00 3.06
4767 7506 2.028294 TGTCGCCTACACCGGAAAAATA 60.028 45.455 9.46 0.00 31.43 1.40
4777 7516 4.457949 ACACCGGAAAAATAACCAGCTAAG 59.542 41.667 9.46 0.00 0.00 2.18
4795 7534 5.050490 GCTAAGTAGGACATACATGTGGTG 58.950 45.833 9.11 9.94 41.95 4.17
4822 7561 0.919710 GGGATTTGGCCTAGTGGACT 59.080 55.000 3.32 0.00 43.49 3.85
4837 7576 0.250597 GGACTGGTACCACAACCACC 60.251 60.000 11.60 4.66 44.68 4.61
4843 7582 0.769247 GTACCACAACCACCCTCCTT 59.231 55.000 0.00 0.00 0.00 3.36
4848 7587 2.356135 CACAACCACCCTCCTTATTCG 58.644 52.381 0.00 0.00 0.00 3.34
4850 7589 2.290071 ACAACCACCCTCCTTATTCGTG 60.290 50.000 0.00 0.00 0.00 4.35
4851 7590 1.946984 ACCACCCTCCTTATTCGTGA 58.053 50.000 0.00 0.00 0.00 4.35
4859 7598 3.558321 CCTCCTTATTCGTGACCAACCAA 60.558 47.826 0.00 0.00 0.00 3.67
4924 7667 9.944376 ACACTGTTTTATGTATATCTGTGACTT 57.056 29.630 0.00 0.00 0.00 3.01
4933 7676 2.030027 ATCTGTGACTTGACTCCCCA 57.970 50.000 0.00 0.00 0.00 4.96
4935 7678 3.184382 TCTGTGACTTGACTCCCCATA 57.816 47.619 0.00 0.00 0.00 2.74
4941 7689 4.016444 TGACTTGACTCCCCATAATTTGC 58.984 43.478 0.00 0.00 0.00 3.68
4977 7731 5.176774 CGTGAGTTACAACATAAGCAGAACA 59.823 40.000 0.00 0.00 0.00 3.18
4981 7735 5.701290 AGTTACAACATAAGCAGAACACCTC 59.299 40.000 0.00 0.00 0.00 3.85
5016 7770 2.372172 AGAATTTCAGGTCCTTGTCCGT 59.628 45.455 0.00 0.00 0.00 4.69
5031 7785 5.221165 CCTTGTCCGTCAAAATGGTAAAAGT 60.221 40.000 0.00 0.00 35.48 2.66
5037 7791 8.696175 GTCCGTCAAAATGGTAAAAGTAAAATG 58.304 33.333 0.00 0.00 32.88 2.32
5053 7807 9.598517 AAAGTAAAATGCACATTTCTTTCTTGA 57.401 25.926 8.94 0.00 39.88 3.02
5054 7808 9.598517 AAGTAAAATGCACATTTCTTTCTTGAA 57.401 25.926 8.94 0.00 39.88 2.69
5055 7809 9.034544 AGTAAAATGCACATTTCTTTCTTGAAC 57.965 29.630 8.94 0.00 39.88 3.18
5061 7815 6.767902 TGCACATTTCTTTCTTGAACTACTCT 59.232 34.615 0.00 0.00 0.00 3.24
5074 7828 9.996554 TCTTGAACTACTCTGAATATTGTCAAA 57.003 29.630 0.00 0.00 0.00 2.69
5132 7886 6.639632 ATGAAGAACATATGTGTATTGCCC 57.360 37.500 9.63 0.00 37.67 5.36
5133 7887 4.887071 TGAAGAACATATGTGTATTGCCCC 59.113 41.667 9.63 0.00 37.67 5.80
5134 7888 3.832527 AGAACATATGTGTATTGCCCCC 58.167 45.455 9.63 0.00 37.67 5.40
5136 7890 2.944129 ACATATGTGTATTGCCCCCAC 58.056 47.619 7.78 0.00 36.63 4.61
5138 7892 3.052944 ACATATGTGTATTGCCCCCACTT 60.053 43.478 7.78 0.00 36.63 3.16
5139 7893 1.851304 ATGTGTATTGCCCCCACTTG 58.149 50.000 0.00 0.00 0.00 3.16
5141 7895 1.271871 TGTGTATTGCCCCCACTTGAG 60.272 52.381 0.00 0.00 0.00 3.02
5142 7896 0.331278 TGTATTGCCCCCACTTGAGG 59.669 55.000 0.00 0.00 0.00 3.86
5146 7900 4.748144 GCCCCCACTTGAGGCTGG 62.748 72.222 0.00 0.00 43.62 4.85
5148 7902 2.845345 CCCCCACTTGAGGCTGGTT 61.845 63.158 0.00 0.00 0.00 3.67
5149 7903 1.604593 CCCCACTTGAGGCTGGTTG 60.605 63.158 0.00 0.00 0.00 3.77
5151 7905 0.400213 CCCACTTGAGGCTGGTTGTA 59.600 55.000 0.00 0.00 0.00 2.41
5152 7906 1.202879 CCCACTTGAGGCTGGTTGTAA 60.203 52.381 0.00 0.00 0.00 2.41
5153 7907 2.555227 CCCACTTGAGGCTGGTTGTAAT 60.555 50.000 0.00 0.00 0.00 1.89
5155 7909 3.941483 CCACTTGAGGCTGGTTGTAATAG 59.059 47.826 0.00 0.00 0.00 1.73
5156 7910 3.941483 CACTTGAGGCTGGTTGTAATAGG 59.059 47.826 0.00 0.00 0.00 2.57
5157 7911 3.054361 ACTTGAGGCTGGTTGTAATAGGG 60.054 47.826 0.00 0.00 0.00 3.53
5158 7912 2.840511 TGAGGCTGGTTGTAATAGGGA 58.159 47.619 0.00 0.00 0.00 4.20
5159 7913 2.771943 TGAGGCTGGTTGTAATAGGGAG 59.228 50.000 0.00 0.00 0.00 4.30
5163 8953 4.593634 AGGCTGGTTGTAATAGGGAGTATC 59.406 45.833 0.00 0.00 0.00 2.24
5167 8957 7.092846 GGCTGGTTGTAATAGGGAGTATCATAT 60.093 40.741 0.00 0.00 36.25 1.78
5216 9006 8.343168 AGTGTATGATACTACCTCTCTAATGC 57.657 38.462 4.03 0.00 0.00 3.56
5217 9007 7.945109 AGTGTATGATACTACCTCTCTAATGCA 59.055 37.037 4.03 0.00 0.00 3.96
5219 9009 9.975218 TGTATGATACTACCTCTCTAATGCATA 57.025 33.333 0.00 0.00 0.00 3.14
5280 9070 4.964593 TCATGCATGACACATAGTAGCAT 58.035 39.130 25.42 0.00 41.24 3.79
5282 9072 6.704310 TCATGCATGACACATAGTAGCATAT 58.296 36.000 25.42 0.00 39.67 1.78
5283 9073 6.815142 TCATGCATGACACATAGTAGCATATC 59.185 38.462 25.42 0.00 39.67 1.63
5284 9074 6.100404 TGCATGACACATAGTAGCATATCA 57.900 37.500 0.00 0.00 30.65 2.15
5285 9075 6.704310 TGCATGACACATAGTAGCATATCAT 58.296 36.000 0.00 0.00 30.65 2.45
5287 9077 7.662669 TGCATGACACATAGTAGCATATCATTT 59.337 33.333 0.00 0.00 30.65 2.32
5325 9115 5.504853 TCATGATATGATACTCGAGCCTCT 58.495 41.667 13.61 0.00 33.59 3.69
5326 9116 5.588246 TCATGATATGATACTCGAGCCTCTC 59.412 44.000 13.61 4.82 33.59 3.20
5327 9117 5.172687 TGATATGATACTCGAGCCTCTCT 57.827 43.478 13.61 4.38 0.00 3.10
5328 9118 5.565509 TGATATGATACTCGAGCCTCTCTT 58.434 41.667 13.61 5.24 0.00 2.85
5329 9119 6.007076 TGATATGATACTCGAGCCTCTCTTT 58.993 40.000 13.61 0.00 0.00 2.52
5330 9120 4.846779 ATGATACTCGAGCCTCTCTTTC 57.153 45.455 13.61 0.00 0.00 2.62
5331 9121 3.892284 TGATACTCGAGCCTCTCTTTCT 58.108 45.455 13.61 0.00 0.00 2.52
5333 9123 4.336993 TGATACTCGAGCCTCTCTTTCTTC 59.663 45.833 13.61 0.00 0.00 2.87
5334 9124 2.520069 ACTCGAGCCTCTCTTTCTTCA 58.480 47.619 13.61 0.00 0.00 3.02
5335 9125 3.096092 ACTCGAGCCTCTCTTTCTTCAT 58.904 45.455 13.61 0.00 0.00 2.57
5337 9127 4.020662 ACTCGAGCCTCTCTTTCTTCATTT 60.021 41.667 13.61 0.00 0.00 2.32
5338 9128 5.186021 ACTCGAGCCTCTCTTTCTTCATTTA 59.814 40.000 13.61 0.00 0.00 1.40
5339 9129 6.037786 TCGAGCCTCTCTTTCTTCATTTAA 57.962 37.500 0.00 0.00 0.00 1.52
5341 9131 7.106239 TCGAGCCTCTCTTTCTTCATTTAATT 58.894 34.615 0.00 0.00 0.00 1.40
5342 9132 7.607991 TCGAGCCTCTCTTTCTTCATTTAATTT 59.392 33.333 0.00 0.00 0.00 1.82
5343 9133 8.883731 CGAGCCTCTCTTTCTTCATTTAATTTA 58.116 33.333 0.00 0.00 0.00 1.40
5363 9153 6.926280 TTTATGACACGTCATCAAAATTGC 57.074 33.333 15.68 0.00 46.57 3.56
5365 9155 2.884012 TGACACGTCATCAAAATTGCCT 59.116 40.909 0.00 0.00 34.14 4.75
5366 9156 4.068599 TGACACGTCATCAAAATTGCCTA 58.931 39.130 0.00 0.00 34.14 3.93
5367 9157 4.154015 TGACACGTCATCAAAATTGCCTAG 59.846 41.667 0.00 0.00 34.14 3.02
5369 9159 4.518970 ACACGTCATCAAAATTGCCTAGTT 59.481 37.500 0.00 0.00 0.00 2.24
5370 9160 4.853196 CACGTCATCAAAATTGCCTAGTTG 59.147 41.667 0.00 0.00 0.00 3.16
5372 9162 4.082787 CGTCATCAAAATTGCCTAGTTGGT 60.083 41.667 0.00 0.00 38.35 3.67
5373 9163 5.123186 CGTCATCAAAATTGCCTAGTTGGTA 59.877 40.000 0.00 0.00 38.35 3.25
5374 9164 6.183360 CGTCATCAAAATTGCCTAGTTGGTAT 60.183 38.462 0.00 0.00 38.35 2.73
5375 9165 6.974622 GTCATCAAAATTGCCTAGTTGGTATG 59.025 38.462 0.00 0.00 38.35 2.39
5377 9167 4.769488 TCAAAATTGCCTAGTTGGTATGCA 59.231 37.500 0.00 0.00 38.35 3.96
5378 9168 5.421693 TCAAAATTGCCTAGTTGGTATGCAT 59.578 36.000 3.79 3.79 32.90 3.96
5379 9169 4.924305 AATTGCCTAGTTGGTATGCATG 57.076 40.909 10.16 0.00 32.90 4.06
5381 9171 3.862877 TGCCTAGTTGGTATGCATGAT 57.137 42.857 10.16 0.00 38.35 2.45
5386 9176 6.102663 GCCTAGTTGGTATGCATGATACTAG 58.897 44.000 21.19 21.19 37.64 2.57
5387 9177 6.102663 CCTAGTTGGTATGCATGATACTAGC 58.897 44.000 21.98 10.56 37.64 3.42
5388 9178 5.815233 AGTTGGTATGCATGATACTAGCT 57.185 39.130 10.16 2.10 35.56 3.32
5389 9179 6.918067 AGTTGGTATGCATGATACTAGCTA 57.082 37.500 10.16 0.00 37.66 3.32
5390 9180 7.487822 AGTTGGTATGCATGATACTAGCTAT 57.512 36.000 10.16 0.00 37.66 2.97
5391 9181 7.326454 AGTTGGTATGCATGATACTAGCTATG 58.674 38.462 10.16 0.00 37.66 2.23
5392 9182 7.179160 AGTTGGTATGCATGATACTAGCTATGA 59.821 37.037 10.16 0.00 37.66 2.15
5393 9183 7.666063 TGGTATGCATGATACTAGCTATGAT 57.334 36.000 10.16 0.00 37.64 2.45
5395 9185 9.372189 TGGTATGCATGATACTAGCTATGATAT 57.628 33.333 10.16 0.00 37.64 1.63
5399 9189 9.926158 ATGCATGATACTAGCTATGATATTAGC 57.074 33.333 0.00 0.00 44.03 3.09
5400 9190 8.917088 TGCATGATACTAGCTATGATATTAGCA 58.083 33.333 8.72 0.00 45.72 3.49
5401 9191 9.926158 GCATGATACTAGCTATGATATTAGCAT 57.074 33.333 8.72 0.00 45.72 3.79
5408 9198 9.877178 ACTAGCTATGATATTAGCATTACAACC 57.123 33.333 8.72 0.00 45.72 3.77
5410 9200 8.783833 AGCTATGATATTAGCATTACAACCAG 57.216 34.615 8.72 0.00 45.72 4.00
5412 9202 6.824305 ATGATATTAGCATTACAACCAGCC 57.176 37.500 0.00 0.00 0.00 4.85
5419 9622 2.558359 GCATTACAACCAGCCTGAAGTT 59.442 45.455 0.00 0.00 0.00 2.66
5474 9677 0.321671 AATGCTACGTGCTGAGTGGT 59.678 50.000 0.00 0.00 43.37 4.16
5483 9686 2.740055 CTGAGTGGTGCGTGGCTC 60.740 66.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.007626 CGAAGAATCAAAAGACTGTTGACCA 59.992 40.000 10.33 0.00 37.80 4.02
43 44 5.236478 TGTCTGGTTCGAAGAATCAAAAGAC 59.764 40.000 0.00 4.14 45.90 3.01
71 72 5.570641 CGGCTCTCTCTATCTCTATTCCTGA 60.571 48.000 0.00 0.00 0.00 3.86
75 76 5.123344 GGAACGGCTCTCTCTATCTCTATTC 59.877 48.000 0.00 0.00 0.00 1.75
76 77 5.007682 GGAACGGCTCTCTCTATCTCTATT 58.992 45.833 0.00 0.00 0.00 1.73
78 79 3.391626 TGGAACGGCTCTCTCTATCTCTA 59.608 47.826 0.00 0.00 0.00 2.43
81 82 2.303175 GTGGAACGGCTCTCTCTATCT 58.697 52.381 0.00 0.00 0.00 1.98
82 83 2.025155 TGTGGAACGGCTCTCTCTATC 58.975 52.381 0.00 0.00 42.39 2.08
84 85 2.025155 GATGTGGAACGGCTCTCTCTA 58.975 52.381 0.00 0.00 42.39 2.43
85 86 0.820871 GATGTGGAACGGCTCTCTCT 59.179 55.000 0.00 0.00 42.39 3.10
86 87 0.526524 CGATGTGGAACGGCTCTCTC 60.527 60.000 0.00 0.00 42.39 3.20
87 88 1.513158 CGATGTGGAACGGCTCTCT 59.487 57.895 0.00 0.00 42.39 3.10
88 89 2.167861 GCGATGTGGAACGGCTCTC 61.168 63.158 0.00 0.00 42.39 3.20
89 90 2.125512 GCGATGTGGAACGGCTCT 60.126 61.111 0.00 0.00 42.39 4.09
90 91 1.766143 GATGCGATGTGGAACGGCTC 61.766 60.000 0.00 0.00 42.39 4.70
92 93 2.106074 TGATGCGATGTGGAACGGC 61.106 57.895 0.00 0.00 42.39 5.68
93 94 1.018752 TGTGATGCGATGTGGAACGG 61.019 55.000 0.00 0.00 42.39 4.44
94 95 0.095245 GTGTGATGCGATGTGGAACG 59.905 55.000 0.00 0.00 42.39 3.95
95 96 0.447801 GGTGTGATGCGATGTGGAAC 59.552 55.000 0.00 0.00 37.35 3.62
96 97 0.036022 TGGTGTGATGCGATGTGGAA 59.964 50.000 0.00 0.00 0.00 3.53
128 151 7.282585 AGCAACTATAGTATCTTGCAAATGGA 58.717 34.615 22.85 0.00 37.83 3.41
210 359 6.479972 TTATTATGTCCACTGGAGTACTGG 57.520 41.667 0.00 0.00 29.39 4.00
211 360 9.698309 CTTATTATTATGTCCACTGGAGTACTG 57.302 37.037 0.00 0.00 29.39 2.74
212 361 9.656323 TCTTATTATTATGTCCACTGGAGTACT 57.344 33.333 0.00 0.00 29.39 2.73
213 362 9.915629 CTCTTATTATTATGTCCACTGGAGTAC 57.084 37.037 0.00 0.00 29.39 2.73
214 363 9.877222 TCTCTTATTATTATGTCCACTGGAGTA 57.123 33.333 0.00 0.00 29.39 2.59
215 364 8.783660 TCTCTTATTATTATGTCCACTGGAGT 57.216 34.615 0.00 0.00 29.39 3.85
216 365 9.083422 TCTCTCTTATTATTATGTCCACTGGAG 57.917 37.037 0.00 0.00 29.39 3.86
217 366 9.434275 TTCTCTCTTATTATTATGTCCACTGGA 57.566 33.333 0.00 0.00 0.00 3.86
253 402 2.685388 CTCGTCTGCTCTCTTATCCACA 59.315 50.000 0.00 0.00 0.00 4.17
279 428 2.751837 GCCGGAGAGCCAAAAGGG 60.752 66.667 5.05 0.00 40.85 3.95
293 442 0.373716 GTTTATGCTCCGTGAAGCCG 59.626 55.000 0.00 0.00 41.77 5.52
434 583 6.712095 TCATGATTTTGTCTTTCTGTACAGCT 59.288 34.615 18.45 0.00 0.00 4.24
506 655 9.464714 TTTCGTGCAAGCTACATAAAAATAAAA 57.535 25.926 0.00 0.00 0.00 1.52
507 656 9.464714 TTTTCGTGCAAGCTACATAAAAATAAA 57.535 25.926 0.00 0.00 0.00 1.40
516 665 9.236691 CAAAATATATTTTCGTGCAAGCTACAT 57.763 29.630 18.50 0.00 37.86 2.29
694 874 3.961408 CACCACTATGTTAGGAGTAGGCT 59.039 47.826 0.00 0.00 0.00 4.58
695 875 3.492829 GCACCACTATGTTAGGAGTAGGC 60.493 52.174 0.00 0.00 0.00 3.93
696 876 3.704566 TGCACCACTATGTTAGGAGTAGG 59.295 47.826 0.00 0.00 0.00 3.18
743 1044 0.841961 TCGGTATCTTCCTCCCTCGA 59.158 55.000 0.00 0.00 0.00 4.04
889 1190 4.202706 GGGTAGGGTTTAAAAAGGGAAGGA 60.203 45.833 0.00 0.00 0.00 3.36
978 1280 3.247648 ACTGAGCTGCTGCACCCT 61.248 61.111 18.42 0.00 42.74 4.34
1030 1336 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1121 1430 2.183555 CTGCGTACTTCCCCGGTC 59.816 66.667 0.00 0.00 0.00 4.79
1137 1446 1.228063 GCCGGCATCCATGATCACT 60.228 57.895 24.80 0.00 0.00 3.41
1304 1613 8.135529 GGGATAATTAAGGCAACAAGAACATAC 58.864 37.037 0.00 0.00 41.41 2.39
1713 2221 3.988517 ACAGCTGTTAAAACGAGACTAGC 59.011 43.478 15.25 0.00 0.00 3.42
2004 2913 8.352942 CCCAATTTATCCAACAGATAGTTTAGC 58.647 37.037 0.00 0.00 38.69 3.09
2141 3059 6.974932 TGAGATACTCTTTCGTAACGTACT 57.025 37.500 0.00 0.00 0.00 2.73
2184 3102 4.433615 CAACGACTAACCTGTGAGCATAT 58.566 43.478 0.00 0.00 0.00 1.78
2310 3294 7.001073 TGCCTGCAACCCTTTTTAATTAAATT 58.999 30.769 11.33 0.26 0.00 1.82
2311 3295 6.429692 GTGCCTGCAACCCTTTTTAATTAAAT 59.570 34.615 11.33 0.00 0.00 1.40
2314 3298 4.591072 AGTGCCTGCAACCCTTTTTAATTA 59.409 37.500 0.00 0.00 0.00 1.40
2316 3300 2.972021 AGTGCCTGCAACCCTTTTTAAT 59.028 40.909 0.00 0.00 0.00 1.40
2318 3302 1.960689 GAGTGCCTGCAACCCTTTTTA 59.039 47.619 0.00 0.00 0.00 1.52
2351 3347 8.816894 CCCCACTAGTATTTATCACACATCTAT 58.183 37.037 0.00 0.00 0.00 1.98
2353 3349 6.464465 GCCCCACTAGTATTTATCACACATCT 60.464 42.308 0.00 0.00 0.00 2.90
2356 3352 4.471747 TGCCCCACTAGTATTTATCACACA 59.528 41.667 0.00 0.00 0.00 3.72
2357 3353 5.031066 TGCCCCACTAGTATTTATCACAC 57.969 43.478 0.00 0.00 0.00 3.82
2360 3356 4.714632 GCTTGCCCCACTAGTATTTATCA 58.285 43.478 0.00 0.00 0.00 2.15
2361 3357 3.746492 CGCTTGCCCCACTAGTATTTATC 59.254 47.826 0.00 0.00 0.00 1.75
2362 3358 3.496160 CCGCTTGCCCCACTAGTATTTAT 60.496 47.826 0.00 0.00 0.00 1.40
2364 3360 1.408266 CCGCTTGCCCCACTAGTATTT 60.408 52.381 0.00 0.00 0.00 1.40
2366 3362 1.830145 CCGCTTGCCCCACTAGTAT 59.170 57.895 0.00 0.00 0.00 2.12
2367 3363 3.026431 GCCGCTTGCCCCACTAGTA 62.026 63.158 0.00 0.00 0.00 1.82
2369 3365 3.704231 ATGCCGCTTGCCCCACTAG 62.704 63.158 0.00 0.00 40.16 2.57
2370 3366 3.727258 ATGCCGCTTGCCCCACTA 61.727 61.111 0.00 0.00 40.16 2.74
2375 3371 3.207669 CTCTCATGCCGCTTGCCC 61.208 66.667 1.37 0.00 40.16 5.36
2376 3372 3.207669 CCTCTCATGCCGCTTGCC 61.208 66.667 1.37 0.00 40.16 4.52
2377 3373 1.099879 ATTCCTCTCATGCCGCTTGC 61.100 55.000 1.37 0.00 41.77 4.01
2379 3375 3.324846 TGTATATTCCTCTCATGCCGCTT 59.675 43.478 0.00 0.00 0.00 4.68
2381 3377 3.319137 TGTATATTCCTCTCATGCCGC 57.681 47.619 0.00 0.00 0.00 6.53
2382 3378 5.300752 ACTTTGTATATTCCTCTCATGCCG 58.699 41.667 0.00 0.00 0.00 5.69
2383 3379 5.406780 CGACTTTGTATATTCCTCTCATGCC 59.593 44.000 0.00 0.00 0.00 4.40
2384 3380 6.216569 TCGACTTTGTATATTCCTCTCATGC 58.783 40.000 0.00 0.00 0.00 4.06
2385 3381 7.923344 AGTTCGACTTTGTATATTCCTCTCATG 59.077 37.037 0.00 0.00 0.00 3.07
2386 3382 8.012957 AGTTCGACTTTGTATATTCCTCTCAT 57.987 34.615 0.00 0.00 0.00 2.90
2387 3383 7.406031 AGTTCGACTTTGTATATTCCTCTCA 57.594 36.000 0.00 0.00 0.00 3.27
2401 3397 7.040478 TGATGGATCAATTGAAAGTTCGACTTT 60.040 33.333 13.09 11.22 41.34 2.66
2406 3402 6.426980 TCTGATGGATCAATTGAAAGTTCG 57.573 37.500 13.09 5.21 36.18 3.95
2419 3422 6.060136 TGTTTGATTCCAGATCTGATGGATC 58.940 40.000 24.62 16.94 46.06 3.36
2420 3423 6.009908 TGTTTGATTCCAGATCTGATGGAT 57.990 37.500 24.62 8.37 46.06 3.41
2424 3427 7.832685 TCAATCTTGTTTGATTCCAGATCTGAT 59.167 33.333 24.62 10.49 34.77 2.90
2427 3430 7.012138 CGATCAATCTTGTTTGATTCCAGATCT 59.988 37.037 7.93 0.00 44.35 2.75
2429 3432 6.600822 ACGATCAATCTTGTTTGATTCCAGAT 59.399 34.615 7.93 0.00 44.35 2.90
2430 3433 5.939883 ACGATCAATCTTGTTTGATTCCAGA 59.060 36.000 7.93 0.00 44.35 3.86
2431 3434 6.187125 ACGATCAATCTTGTTTGATTCCAG 57.813 37.500 7.93 4.61 44.35 3.86
2432 3435 5.123820 GGACGATCAATCTTGTTTGATTCCA 59.876 40.000 14.28 0.00 44.35 3.53
2434 3437 6.428385 AGGACGATCAATCTTGTTTGATTC 57.572 37.500 7.93 4.09 44.35 2.52
2435 3438 6.824305 AAGGACGATCAATCTTGTTTGATT 57.176 33.333 7.93 0.00 44.35 2.57
2442 3445 8.383318 ACCAAATATAAGGACGATCAATCTTG 57.617 34.615 0.00 0.00 0.00 3.02
2444 3447 7.445402 CCAACCAAATATAAGGACGATCAATCT 59.555 37.037 0.00 0.00 0.00 2.40
2445 3448 7.584987 CCAACCAAATATAAGGACGATCAATC 58.415 38.462 0.00 0.00 0.00 2.67
2446 3449 6.016276 GCCAACCAAATATAAGGACGATCAAT 60.016 38.462 0.00 0.00 0.00 2.57
2447 3450 5.298276 GCCAACCAAATATAAGGACGATCAA 59.702 40.000 0.00 0.00 0.00 2.57
2449 3452 4.819630 TGCCAACCAAATATAAGGACGATC 59.180 41.667 0.00 0.00 0.00 3.69
2452 3455 4.974368 TTGCCAACCAAATATAAGGACG 57.026 40.909 0.65 0.00 0.00 4.79
2462 3465 8.964476 TCTTGTATTTAAATTTGCCAACCAAA 57.036 26.923 5.91 0.00 46.64 3.28
2517 3520 9.905713 ACATTTTTGCACCTCTCTATATTCTAA 57.094 29.630 0.00 0.00 0.00 2.10
2519 3522 7.831193 ACACATTTTTGCACCTCTCTATATTCT 59.169 33.333 0.00 0.00 0.00 2.40
2520 3523 7.989826 ACACATTTTTGCACCTCTCTATATTC 58.010 34.615 0.00 0.00 0.00 1.75
2521 3524 7.944729 ACACATTTTTGCACCTCTCTATATT 57.055 32.000 0.00 0.00 0.00 1.28
2523 3526 7.144722 CAACACATTTTTGCACCTCTCTATA 57.855 36.000 0.00 0.00 0.00 1.31
2524 3527 6.017400 CAACACATTTTTGCACCTCTCTAT 57.983 37.500 0.00 0.00 0.00 1.98
2535 3538 2.540931 GAGTGCCTGCAACACATTTTTG 59.459 45.455 18.73 0.00 40.59 2.44
2536 3539 2.168106 TGAGTGCCTGCAACACATTTTT 59.832 40.909 18.73 1.10 40.59 1.94
2537 3540 1.755959 TGAGTGCCTGCAACACATTTT 59.244 42.857 18.73 1.43 40.59 1.82
2538 3541 1.338973 CTGAGTGCCTGCAACACATTT 59.661 47.619 18.73 1.74 40.59 2.32
2539 3542 0.956633 CTGAGTGCCTGCAACACATT 59.043 50.000 18.73 2.38 40.59 2.71
2540 3543 0.179009 ACTGAGTGCCTGCAACACAT 60.179 50.000 18.73 6.71 40.59 3.21
2541 3544 0.394216 AACTGAGTGCCTGCAACACA 60.394 50.000 18.73 4.91 40.59 3.72
2542 3545 0.740737 AAACTGAGTGCCTGCAACAC 59.259 50.000 10.77 10.77 38.35 3.32
2543 3546 2.340210 TAAACTGAGTGCCTGCAACA 57.660 45.000 0.00 0.00 0.00 3.33
2544 3547 3.708563 TTTAAACTGAGTGCCTGCAAC 57.291 42.857 0.00 0.00 0.00 4.17
2572 3575 5.701290 GCCCCACTAGTATTTATCACACATC 59.299 44.000 0.00 0.00 0.00 3.06
2597 3600 6.844696 TTGTATATTCTTCTCATGCCGTTC 57.155 37.500 0.00 0.00 0.00 3.95
2599 3602 6.349300 ACTTTGTATATTCTTCTCATGCCGT 58.651 36.000 0.00 0.00 0.00 5.68
2647 3653 5.705397 TGTTTGATTCCAGATCTCCAGAT 57.295 39.130 0.00 0.00 37.51 2.90
2648 3654 5.249163 TCTTGTTTGATTCCAGATCTCCAGA 59.751 40.000 0.00 0.00 0.00 3.86
2649 3655 5.494724 TCTTGTTTGATTCCAGATCTCCAG 58.505 41.667 0.00 0.00 0.00 3.86
2650 3656 5.503634 TCTTGTTTGATTCCAGATCTCCA 57.496 39.130 0.00 0.00 0.00 3.86
2651 3657 6.600822 TCAATCTTGTTTGATTCCAGATCTCC 59.399 38.462 0.00 0.00 34.77 3.71
2652 3658 7.621428 TCAATCTTGTTTGATTCCAGATCTC 57.379 36.000 0.00 0.00 34.77 2.75
2688 3694 8.713708 TCTTGTATTTAGATTTCCCAACCAAA 57.286 30.769 0.00 0.00 0.00 3.28
2900 4148 4.580580 AGTTGAGTCACTCATTTTGGGAAC 59.419 41.667 8.74 0.81 40.39 3.62
2912 4160 3.758554 AGTTTGTGCAAAGTTGAGTCACT 59.241 39.130 0.00 0.00 30.25 3.41
2929 4177 7.487829 TCAGCTTTGCACTAACTTTAAAGTTTG 59.512 33.333 32.37 30.58 46.52 2.93
2932 4180 6.318900 ACTCAGCTTTGCACTAACTTTAAAGT 59.681 34.615 15.22 15.22 42.04 2.66
2933 4181 6.729187 ACTCAGCTTTGCACTAACTTTAAAG 58.271 36.000 13.76 13.76 0.00 1.85
2936 4184 5.236478 GTGACTCAGCTTTGCACTAACTTTA 59.764 40.000 0.00 0.00 0.00 1.85
2940 4188 3.134458 AGTGACTCAGCTTTGCACTAAC 58.866 45.455 6.51 0.00 37.98 2.34
2941 4189 3.475566 AGTGACTCAGCTTTGCACTAA 57.524 42.857 6.51 0.00 37.98 2.24
2942 4190 3.475566 AAGTGACTCAGCTTTGCACTA 57.524 42.857 8.24 0.00 38.74 2.74
2947 4195 5.241506 TCCCAAAATAAGTGACTCAGCTTTG 59.758 40.000 0.00 0.00 0.00 2.77
3049 4297 5.466393 CCATTTTGATTTGGTGTGGAACTTC 59.534 40.000 0.00 0.00 38.04 3.01
3078 4860 0.408700 AGACCGTCAACCCCTACTCT 59.591 55.000 0.40 0.00 0.00 3.24
3186 5020 8.958175 TTTATTGGTCGACACAACATAATTTC 57.042 30.769 18.91 0.00 0.00 2.17
3310 5295 6.986817 TCATTCTTACTTTGGCTACATAGAGC 59.013 38.462 0.00 0.00 42.05 4.09
3311 5296 9.202273 GATCATTCTTACTTTGGCTACATAGAG 57.798 37.037 0.00 0.00 31.18 2.43
3312 5297 8.150945 GGATCATTCTTACTTTGGCTACATAGA 58.849 37.037 0.00 0.00 31.18 1.98
3645 6301 3.127548 GGAAGGTGTTCATGCATGTGTAG 59.872 47.826 25.43 0.12 33.93 2.74
3832 6488 1.901591 CTTCACAGGGTGCACTCAAT 58.098 50.000 21.13 2.64 32.98 2.57
4026 6701 8.281212 AGAGAGACACAAATACAACAGTTTTT 57.719 30.769 0.00 0.00 0.00 1.94
4027 6702 7.865706 AGAGAGACACAAATACAACAGTTTT 57.134 32.000 0.00 0.00 0.00 2.43
4028 6703 7.865706 AAGAGAGACACAAATACAACAGTTT 57.134 32.000 0.00 0.00 0.00 2.66
4029 6704 7.770897 AGAAAGAGAGACACAAATACAACAGTT 59.229 33.333 0.00 0.00 0.00 3.16
4030 6705 7.225538 CAGAAAGAGAGACACAAATACAACAGT 59.774 37.037 0.00 0.00 0.00 3.55
4031 6706 7.307632 CCAGAAAGAGAGACACAAATACAACAG 60.308 40.741 0.00 0.00 0.00 3.16
4032 6707 6.483307 CCAGAAAGAGAGACACAAATACAACA 59.517 38.462 0.00 0.00 0.00 3.33
4033 6708 6.566753 GCCAGAAAGAGAGACACAAATACAAC 60.567 42.308 0.00 0.00 0.00 3.32
4034 6709 5.470098 GCCAGAAAGAGAGACACAAATACAA 59.530 40.000 0.00 0.00 0.00 2.41
4064 6757 5.163447 CCTCACTGTCGATTAATCCAACCTA 60.163 44.000 9.87 0.00 0.00 3.08
4156 6849 2.360475 GCCGCCTTTGCTTCCTCT 60.360 61.111 0.00 0.00 34.43 3.69
4353 7073 6.767902 TGATTCATATCAGCTAAACCAAGTCC 59.232 38.462 0.00 0.00 35.87 3.85
4384 7104 2.328099 GGCTCCAAACCTGCACTCG 61.328 63.158 0.00 0.00 0.00 4.18
4404 7124 0.326264 ACCACTGTGATCTCCTTGGC 59.674 55.000 9.86 0.00 0.00 4.52
4628 7355 6.584185 ATGCCGTTTACCCAATATTTATCC 57.416 37.500 0.00 0.00 0.00 2.59
4631 7358 5.474189 GCCTATGCCGTTTACCCAATATTTA 59.526 40.000 0.00 0.00 0.00 1.40
4640 7367 2.032924 GTGAATGCCTATGCCGTTTACC 59.967 50.000 0.00 0.00 36.33 2.85
4654 7381 7.770801 TTATATGAGTGTACTGTGTGAATGC 57.229 36.000 0.00 0.00 0.00 3.56
4728 7467 5.191059 GCGACATTTCTATTGACAACGATC 58.809 41.667 0.00 0.00 0.00 3.69
4729 7468 4.034048 GGCGACATTTCTATTGACAACGAT 59.966 41.667 0.00 0.00 0.00 3.73
4749 7488 2.096335 GGTTATTTTTCCGGTGTAGGCG 59.904 50.000 0.00 0.00 0.00 5.52
4767 7506 5.425539 ACATGTATGTCCTACTTAGCTGGTT 59.574 40.000 0.00 0.00 35.87 3.67
4777 7516 6.216801 TCTAACACCACATGTATGTCCTAC 57.783 41.667 13.70 0.00 42.31 3.18
4795 7534 5.513267 CCACTAGGCCAAATCCCTATCTAAC 60.513 48.000 5.01 0.00 34.59 2.34
4822 7561 1.420532 GGAGGGTGGTTGTGGTACCA 61.421 60.000 11.60 11.60 45.73 3.25
4837 7576 2.027561 TGGTTGGTCACGAATAAGGAGG 60.028 50.000 0.00 0.00 0.00 4.30
4843 7582 2.932855 TGGTTGGTTGGTCACGAATA 57.067 45.000 0.00 0.00 0.00 1.75
4859 7598 4.864704 AAAACGATAAGCAACCATTGGT 57.135 36.364 1.37 1.37 44.43 3.67
4924 7667 3.737559 ACAGCAAATTATGGGGAGTCA 57.262 42.857 0.00 0.00 0.00 3.41
4933 7676 8.349983 ACTCACGTTTTAGAAACAGCAAATTAT 58.650 29.630 4.65 0.00 0.00 1.28
4935 7678 6.560711 ACTCACGTTTTAGAAACAGCAAATT 58.439 32.000 4.65 0.00 0.00 1.82
4941 7689 7.457868 TGTTGTAACTCACGTTTTAGAAACAG 58.542 34.615 4.65 0.71 34.59 3.16
4959 7707 5.865085 AGAGGTGTTCTGCTTATGTTGTAA 58.135 37.500 0.00 0.00 33.93 2.41
4981 7735 4.836825 TGAAATTCTCTGAACCTGGCTAG 58.163 43.478 0.00 0.00 0.00 3.42
5016 7770 8.948631 TGTGCATTTTACTTTTACCATTTTGA 57.051 26.923 0.00 0.00 0.00 2.69
5037 7791 7.041780 TCAGAGTAGTTCAAGAAAGAAATGTGC 60.042 37.037 0.00 0.00 0.00 4.57
5132 7886 0.400213 TACAACCAGCCTCAAGTGGG 59.600 55.000 0.00 0.00 38.25 4.61
5133 7887 2.270352 TTACAACCAGCCTCAAGTGG 57.730 50.000 0.00 0.00 39.98 4.00
5134 7888 3.941483 CCTATTACAACCAGCCTCAAGTG 59.059 47.826 0.00 0.00 0.00 3.16
5136 7890 3.199946 TCCCTATTACAACCAGCCTCAAG 59.800 47.826 0.00 0.00 0.00 3.02
5138 7892 2.771943 CTCCCTATTACAACCAGCCTCA 59.228 50.000 0.00 0.00 0.00 3.86
5139 7893 2.772515 ACTCCCTATTACAACCAGCCTC 59.227 50.000 0.00 0.00 0.00 4.70
5141 7895 4.347000 TGATACTCCCTATTACAACCAGCC 59.653 45.833 0.00 0.00 0.00 4.85
5142 7896 5.546621 TGATACTCCCTATTACAACCAGC 57.453 43.478 0.00 0.00 0.00 4.85
5155 7909 9.355916 TGCATGATACTAGTATATGATACTCCC 57.644 37.037 22.89 9.00 0.00 4.30
5190 8980 9.451002 GCATTAGAGAGGTAGTATCATACACTA 57.549 37.037 0.00 0.00 0.00 2.74
5191 8981 7.945109 TGCATTAGAGAGGTAGTATCATACACT 59.055 37.037 0.00 0.00 0.00 3.55
5192 8982 8.112016 TGCATTAGAGAGGTAGTATCATACAC 57.888 38.462 0.00 0.00 0.00 2.90
5258 9048 4.405116 TGCTACTATGTGTCATGCATGA 57.595 40.909 25.42 25.42 0.00 3.07
5259 9049 6.592607 TGATATGCTACTATGTGTCATGCATG 59.407 38.462 21.07 21.07 39.07 4.06
5261 9051 6.100404 TGATATGCTACTATGTGTCATGCA 57.900 37.500 0.00 0.00 35.34 3.96
5262 9052 7.606858 AATGATATGCTACTATGTGTCATGC 57.393 36.000 0.00 0.00 0.00 4.06
5301 9091 7.855368 AGAGAGGCTCGAGTATCATATCATGAT 60.855 40.741 15.13 13.81 42.85 2.45
5302 9092 5.504853 AGAGGCTCGAGTATCATATCATGA 58.495 41.667 15.13 0.00 44.55 3.07
5303 9093 5.589855 AGAGAGGCTCGAGTATCATATCATG 59.410 44.000 15.13 0.00 35.36 3.07
5306 9096 6.374333 AGAAAGAGAGGCTCGAGTATCATATC 59.626 42.308 15.13 2.02 35.36 1.63
5307 9097 6.245408 AGAAAGAGAGGCTCGAGTATCATAT 58.755 40.000 15.13 0.00 35.36 1.78
5308 9098 5.626142 AGAAAGAGAGGCTCGAGTATCATA 58.374 41.667 15.13 0.00 35.36 2.15
5310 9100 3.892284 AGAAAGAGAGGCTCGAGTATCA 58.108 45.455 15.13 0.00 35.36 2.15
5311 9101 4.336993 TGAAGAAAGAGAGGCTCGAGTATC 59.663 45.833 15.13 12.20 35.36 2.24
5314 9104 2.520069 TGAAGAAAGAGAGGCTCGAGT 58.480 47.619 15.13 0.00 35.36 4.18
5315 9105 3.799281 ATGAAGAAAGAGAGGCTCGAG 57.201 47.619 8.45 8.45 35.36 4.04
5317 9107 6.917217 ATTAAATGAAGAAAGAGAGGCTCG 57.083 37.500 9.22 0.00 35.36 5.03
5344 9134 2.884012 AGGCAATTTTGATGACGTGTCA 59.116 40.909 4.99 4.99 44.59 3.58
5345 9135 3.559238 AGGCAATTTTGATGACGTGTC 57.441 42.857 0.00 0.00 0.00 3.67
5347 9137 4.685169 ACTAGGCAATTTTGATGACGTG 57.315 40.909 0.00 0.00 0.00 4.49
5348 9138 4.082787 CCAACTAGGCAATTTTGATGACGT 60.083 41.667 0.00 0.00 0.00 4.34
5349 9139 4.082787 ACCAACTAGGCAATTTTGATGACG 60.083 41.667 0.00 0.00 43.14 4.35
5350 9140 5.391312 ACCAACTAGGCAATTTTGATGAC 57.609 39.130 0.00 0.00 43.14 3.06
5351 9141 6.405731 GCATACCAACTAGGCAATTTTGATGA 60.406 38.462 0.00 0.00 43.14 2.92
5352 9142 5.750067 GCATACCAACTAGGCAATTTTGATG 59.250 40.000 0.00 0.00 43.14 3.07
5353 9143 5.421693 TGCATACCAACTAGGCAATTTTGAT 59.578 36.000 0.00 0.00 39.19 2.57
5354 9144 4.769488 TGCATACCAACTAGGCAATTTTGA 59.231 37.500 0.00 0.00 39.19 2.69
5359 9149 4.169059 TCATGCATACCAACTAGGCAAT 57.831 40.909 0.00 0.00 44.97 3.56
5360 9150 3.643199 TCATGCATACCAACTAGGCAA 57.357 42.857 0.00 0.00 44.97 4.52
5361 9151 3.862877 ATCATGCATACCAACTAGGCA 57.137 42.857 0.00 0.00 45.84 4.75
5362 9152 4.899502 AGTATCATGCATACCAACTAGGC 58.100 43.478 0.00 0.00 43.14 3.93
5363 9153 6.071108 AGCTAGTATCATGCATACCAACTAGG 60.071 42.308 24.41 14.45 38.62 3.02
5365 9155 6.918067 AGCTAGTATCATGCATACCAACTA 57.082 37.500 0.00 4.70 38.62 2.24
5366 9156 5.815233 AGCTAGTATCATGCATACCAACT 57.185 39.130 0.00 3.70 38.62 3.16
5367 9157 7.323420 TCATAGCTAGTATCATGCATACCAAC 58.677 38.462 0.00 0.00 38.62 3.77
5369 9159 7.666063 ATCATAGCTAGTATCATGCATACCA 57.334 36.000 0.00 0.00 38.62 3.25
5373 9163 9.926158 GCTAATATCATAGCTAGTATCATGCAT 57.074 33.333 0.00 0.00 43.94 3.96
5374 9164 8.917088 TGCTAATATCATAGCTAGTATCATGCA 58.083 33.333 0.00 0.00 46.74 3.96
5375 9165 9.926158 ATGCTAATATCATAGCTAGTATCATGC 57.074 33.333 0.00 0.00 46.74 4.06
5386 9176 7.414540 GGCTGGTTGTAATGCTAATATCATAGC 60.415 40.741 0.21 0.21 46.78 2.97
5387 9177 7.826252 AGGCTGGTTGTAATGCTAATATCATAG 59.174 37.037 0.00 0.00 0.00 2.23
5388 9178 7.607607 CAGGCTGGTTGTAATGCTAATATCATA 59.392 37.037 6.61 0.00 0.00 2.15
5389 9179 6.432162 CAGGCTGGTTGTAATGCTAATATCAT 59.568 38.462 6.61 0.00 0.00 2.45
5390 9180 5.764686 CAGGCTGGTTGTAATGCTAATATCA 59.235 40.000 6.61 0.00 0.00 2.15
5391 9181 5.997746 TCAGGCTGGTTGTAATGCTAATATC 59.002 40.000 15.73 0.00 0.00 1.63
5392 9182 5.940617 TCAGGCTGGTTGTAATGCTAATAT 58.059 37.500 15.73 0.00 0.00 1.28
5393 9183 5.366482 TCAGGCTGGTTGTAATGCTAATA 57.634 39.130 15.73 0.00 0.00 0.98
5395 9185 3.712016 TCAGGCTGGTTGTAATGCTAA 57.288 42.857 15.73 0.00 0.00 3.09
5396 9186 3.009033 ACTTCAGGCTGGTTGTAATGCTA 59.991 43.478 15.73 0.00 0.00 3.49
5398 9188 2.162681 ACTTCAGGCTGGTTGTAATGC 58.837 47.619 15.73 0.00 0.00 3.56
5399 9189 3.057315 CCAACTTCAGGCTGGTTGTAATG 60.057 47.826 25.07 12.81 38.74 1.90
5400 9190 3.157087 CCAACTTCAGGCTGGTTGTAAT 58.843 45.455 25.07 5.35 38.74 1.89
5401 9191 2.582052 CCAACTTCAGGCTGGTTGTAA 58.418 47.619 25.07 9.76 38.74 2.41
5402 9192 2.270352 CCAACTTCAGGCTGGTTGTA 57.730 50.000 25.07 2.81 38.74 2.41
5403 9193 3.116091 CCAACTTCAGGCTGGTTGT 57.884 52.632 25.07 15.41 38.74 3.32
5412 9202 0.606401 ATGGTGGTCGCCAACTTCAG 60.606 55.000 13.81 0.00 42.67 3.02
5492 9695 2.292016 CCAAACACACCAATAGCGACAA 59.708 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.