Multiple sequence alignment - TraesCS2D01G019000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G019000 chr2D 100.000 5346 0 0 1 5346 8975495 8980840 0.000000e+00 9873.0
1 TraesCS2D01G019000 chr2D 87.058 1329 137 18 1419 2729 21112417 21111106 0.000000e+00 1469.0
2 TraesCS2D01G019000 chr2D 79.713 907 156 22 1219 2117 30479027 30479913 9.770000e-177 630.0
3 TraesCS2D01G019000 chr2D 78.535 778 138 18 1309 2080 30462726 30461972 8.050000e-133 484.0
4 TraesCS2D01G019000 chr2D 82.342 538 52 10 2733 3231 21111011 21110478 1.380000e-115 427.0
5 TraesCS2D01G019000 chr2D 94.737 57 2 1 733 789 78311582 78311527 2.650000e-13 87.9
6 TraesCS2D01G019000 chr2A 93.760 1875 89 12 3494 5346 8141968 8140100 0.000000e+00 2789.0
7 TraesCS2D01G019000 chr2A 95.757 872 33 2 1490 2361 8143379 8142512 0.000000e+00 1402.0
8 TraesCS2D01G019000 chr2A 85.270 1351 128 31 1381 2697 23218345 23217032 0.000000e+00 1327.0
9 TraesCS2D01G019000 chr2A 85.237 1348 129 29 1381 2694 22908595 22909906 0.000000e+00 1323.0
10 TraesCS2D01G019000 chr2A 85.141 1346 130 32 1383 2694 22912127 22913436 0.000000e+00 1314.0
11 TraesCS2D01G019000 chr2A 85.015 1348 132 29 1381 2694 22762652 22763963 0.000000e+00 1306.0
12 TraesCS2D01G019000 chr2A 84.918 1346 133 30 1383 2694 23003385 23004694 0.000000e+00 1297.0
13 TraesCS2D01G019000 chr2A 84.900 1351 129 28 1381 2697 22701771 22700462 0.000000e+00 1295.0
14 TraesCS2D01G019000 chr2A 83.215 1412 148 40 1613 2965 23296699 23295318 0.000000e+00 1212.0
15 TraesCS2D01G019000 chr2A 97.178 567 12 1 2898 3460 8142519 8141953 0.000000e+00 955.0
16 TraesCS2D01G019000 chr2A 81.328 1039 106 41 1985 2965 22831186 22832194 0.000000e+00 763.0
17 TraesCS2D01G019000 chr2A 93.750 496 28 3 1009 1503 8145349 8144856 0.000000e+00 741.0
18 TraesCS2D01G019000 chr2A 77.868 1107 203 27 1219 2314 32503522 32504597 0.000000e+00 649.0
19 TraesCS2D01G019000 chr2A 88.285 478 52 3 3876 4353 23294098 23293625 2.160000e-158 569.0
20 TraesCS2D01G019000 chr2A 88.000 475 53 3 3876 4350 22833414 22833884 4.680000e-155 558.0
21 TraesCS2D01G019000 chr2A 82.261 513 51 19 2198 2694 23185374 23185862 1.790000e-109 407.0
22 TraesCS2D01G019000 chr2A 84.715 386 36 6 4970 5346 579582283 579581912 1.090000e-96 364.0
23 TraesCS2D01G019000 chr2A 84.656 378 42 4 4970 5338 726770898 726770528 3.940000e-96 363.0
24 TraesCS2D01G019000 chr2A 97.115 104 1 2 627 729 8145501 8145399 1.980000e-39 174.0
25 TraesCS2D01G019000 chrUn 85.196 1351 128 32 1381 2697 183456641 183455329 0.000000e+00 1321.0
26 TraesCS2D01G019000 chrUn 83.274 1411 148 41 1613 2965 146958119 146956739 0.000000e+00 1218.0
27 TraesCS2D01G019000 chrUn 82.932 1412 152 41 1613 2965 154137432 154138813 0.000000e+00 1190.0
28 TraesCS2D01G019000 chrUn 82.707 1411 156 40 1613 2965 247073377 247071997 0.000000e+00 1173.0
29 TraesCS2D01G019000 chrUn 82.591 1258 129 40 1768 2965 233293012 233291785 0.000000e+00 1027.0
30 TraesCS2D01G019000 chrUn 82.484 1256 132 40 1768 2965 154162289 154163514 0.000000e+00 1020.0
31 TraesCS2D01G019000 chrUn 88.312 770 82 4 1613 2374 348794450 348793681 0.000000e+00 917.0
32 TraesCS2D01G019000 chrUn 84.194 949 99 27 1768 2693 351304727 351305647 0.000000e+00 874.0
33 TraesCS2D01G019000 chrUn 87.657 478 55 3 3876 4353 146955519 146955046 2.180000e-153 553.0
34 TraesCS2D01G019000 chrUn 87.579 475 55 3 3876 4350 154140033 154140503 1.010000e-151 547.0
35 TraesCS2D01G019000 chrUn 87.579 475 55 3 3876 4350 154164734 154165204 1.010000e-151 547.0
36 TraesCS2D01G019000 chrUn 87.474 479 54 4 3876 4353 233290565 233290092 1.010000e-151 547.0
37 TraesCS2D01G019000 chrUn 87.448 478 56 3 3876 4353 351636006 351635533 1.010000e-151 547.0
38 TraesCS2D01G019000 chrUn 82.171 516 52 19 2198 2697 347999194 347998703 1.790000e-109 407.0
39 TraesCS2D01G019000 chrUn 97.826 46 1 0 733 778 37162292 37162247 4.440000e-11 80.5
40 TraesCS2D01G019000 chr2B 80.174 918 161 17 1219 2129 49981388 49980485 0.000000e+00 667.0
41 TraesCS2D01G019000 chr2B 82.518 818 77 24 3862 4636 34547801 34547007 0.000000e+00 658.0
42 TraesCS2D01G019000 chr2B 80.268 745 141 5 1200 1943 22990134 22990873 1.680000e-154 556.0
43 TraesCS2D01G019000 chr2B 84.200 500 46 18 772 1256 11988933 11988452 6.310000e-124 455.0
44 TraesCS2D01G019000 chr2B 85.000 380 32 13 4974 5346 485752196 485752557 3.940000e-96 363.0
45 TraesCS2D01G019000 chr2B 88.953 172 4 6 627 784 11989124 11988954 1.170000e-46 198.0
46 TraesCS2D01G019000 chr2B 89.873 79 8 0 4892 4970 34444559 34444481 9.470000e-18 102.0
47 TraesCS2D01G019000 chr2B 86.747 83 10 1 4888 4970 34458331 34458250 2.050000e-14 91.6
48 TraesCS2D01G019000 chr2B 94.340 53 3 0 727 779 602202363 602202415 1.230000e-11 82.4
49 TraesCS2D01G019000 chr7D 88.415 492 53 2 3862 4353 121904852 121904365 1.660000e-164 590.0
50 TraesCS2D01G019000 chr7D 85.233 386 42 4 4969 5346 22673332 22673710 3.020000e-102 383.0
51 TraesCS2D01G019000 chr7D 91.753 97 8 0 4872 4968 121904163 121904067 9.340000e-28 135.0
52 TraesCS2D01G019000 chr7D 92.000 50 4 0 733 782 589660466 589660515 2.670000e-08 71.3
53 TraesCS2D01G019000 chr5D 82.823 588 85 12 8 582 384688173 384687589 3.690000e-141 512.0
54 TraesCS2D01G019000 chr5D 77.778 576 94 20 8 575 331208183 331208732 1.860000e-84 324.0
55 TraesCS2D01G019000 chr5D 84.071 113 4 4 689 787 384687531 384687419 4.410000e-16 97.1
56 TraesCS2D01G019000 chr5A 79.089 593 99 18 3 580 26159368 26159950 8.400000e-103 385.0
57 TraesCS2D01G019000 chr6D 86.207 348 33 7 4969 5312 65757097 65757433 3.940000e-96 363.0
58 TraesCS2D01G019000 chr3D 84.697 379 40 9 4969 5338 525639121 525638752 3.940000e-96 363.0
59 TraesCS2D01G019000 chr6A 85.095 369 38 9 4969 5323 82105190 82104825 1.420000e-95 361.0
60 TraesCS2D01G019000 chr4A 82.698 341 41 12 4970 5302 636665468 636665138 2.440000e-73 287.0
61 TraesCS2D01G019000 chr4A 100.000 28 0 0 755 782 58558858 58558831 1.000000e-02 52.8
62 TraesCS2D01G019000 chr4D 75.152 656 138 15 1240 1878 93612576 93611929 8.760000e-73 285.0
63 TraesCS2D01G019000 chr4D 94.444 36 1 1 21 55 80077011 80076976 3.000000e-03 54.7
64 TraesCS2D01G019000 chr1D 80.052 386 60 13 4969 5346 64137348 64136972 2.450000e-68 270.0
65 TraesCS2D01G019000 chr1D 91.667 48 4 0 733 780 61983400 61983447 3.460000e-07 67.6
66 TraesCS2D01G019000 chr5B 94.340 53 3 0 727 779 18524812 18524864 1.230000e-11 82.4
67 TraesCS2D01G019000 chr1A 94.000 50 3 0 733 782 37615628 37615677 5.740000e-10 76.8
68 TraesCS2D01G019000 chr3B 93.023 43 2 1 6 48 19749416 19749457 1.610000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G019000 chr2D 8975495 8980840 5345 False 9873.00 9873 100.0000 1 5346 1 chr2D.!!$F1 5345
1 TraesCS2D01G019000 chr2D 21110478 21112417 1939 True 948.00 1469 84.7000 1419 3231 2 chr2D.!!$R3 1812
2 TraesCS2D01G019000 chr2D 30479027 30479913 886 False 630.00 630 79.7130 1219 2117 1 chr2D.!!$F2 898
3 TraesCS2D01G019000 chr2D 30461972 30462726 754 True 484.00 484 78.5350 1309 2080 1 chr2D.!!$R1 771
4 TraesCS2D01G019000 chr2A 23217032 23218345 1313 True 1327.00 1327 85.2700 1381 2697 1 chr2A.!!$R2 1316
5 TraesCS2D01G019000 chr2A 22908595 22913436 4841 False 1318.50 1323 85.1890 1381 2694 2 chr2A.!!$F6 1313
6 TraesCS2D01G019000 chr2A 22762652 22763963 1311 False 1306.00 1306 85.0150 1381 2694 1 chr2A.!!$F1 1313
7 TraesCS2D01G019000 chr2A 23003385 23004694 1309 False 1297.00 1297 84.9180 1383 2694 1 chr2A.!!$F2 1311
8 TraesCS2D01G019000 chr2A 22700462 22701771 1309 True 1295.00 1295 84.9000 1381 2697 1 chr2A.!!$R1 1316
9 TraesCS2D01G019000 chr2A 8140100 8145501 5401 True 1212.20 2789 95.5120 627 5346 5 chr2A.!!$R5 4719
10 TraesCS2D01G019000 chr2A 23293625 23296699 3074 True 890.50 1212 85.7500 1613 4353 2 chr2A.!!$R6 2740
11 TraesCS2D01G019000 chr2A 22831186 22833884 2698 False 660.50 763 84.6640 1985 4350 2 chr2A.!!$F5 2365
12 TraesCS2D01G019000 chr2A 32503522 32504597 1075 False 649.00 649 77.8680 1219 2314 1 chr2A.!!$F4 1095
13 TraesCS2D01G019000 chrUn 183455329 183456641 1312 True 1321.00 1321 85.1960 1381 2697 1 chrUn.!!$R2 1316
14 TraesCS2D01G019000 chrUn 247071997 247073377 1380 True 1173.00 1173 82.7070 1613 2965 1 chrUn.!!$R3 1352
15 TraesCS2D01G019000 chrUn 348793681 348794450 769 True 917.00 917 88.3120 1613 2374 1 chrUn.!!$R5 761
16 TraesCS2D01G019000 chrUn 146955046 146958119 3073 True 885.50 1218 85.4655 1613 4353 2 chrUn.!!$R7 2740
17 TraesCS2D01G019000 chrUn 351304727 351305647 920 False 874.00 874 84.1940 1768 2693 1 chrUn.!!$F1 925
18 TraesCS2D01G019000 chrUn 154137432 154140503 3071 False 868.50 1190 85.2555 1613 4350 2 chrUn.!!$F2 2737
19 TraesCS2D01G019000 chrUn 233290092 233293012 2920 True 787.00 1027 85.0325 1768 4353 2 chrUn.!!$R8 2585
20 TraesCS2D01G019000 chrUn 154162289 154165204 2915 False 783.50 1020 85.0315 1768 4350 2 chrUn.!!$F3 2582
21 TraesCS2D01G019000 chr2B 49980485 49981388 903 True 667.00 667 80.1740 1219 2129 1 chr2B.!!$R4 910
22 TraesCS2D01G019000 chr2B 34547007 34547801 794 True 658.00 658 82.5180 3862 4636 1 chr2B.!!$R3 774
23 TraesCS2D01G019000 chr2B 22990134 22990873 739 False 556.00 556 80.2680 1200 1943 1 chr2B.!!$F1 743
24 TraesCS2D01G019000 chr2B 11988452 11989124 672 True 326.50 455 86.5765 627 1256 2 chr2B.!!$R5 629
25 TraesCS2D01G019000 chr7D 121904067 121904852 785 True 362.50 590 90.0840 3862 4968 2 chr7D.!!$R1 1106
26 TraesCS2D01G019000 chr5D 331208183 331208732 549 False 324.00 324 77.7780 8 575 1 chr5D.!!$F1 567
27 TraesCS2D01G019000 chr5D 384687419 384688173 754 True 304.55 512 83.4470 8 787 2 chr5D.!!$R1 779
28 TraesCS2D01G019000 chr5A 26159368 26159950 582 False 385.00 385 79.0890 3 580 1 chr5A.!!$F1 577
29 TraesCS2D01G019000 chr4D 93611929 93612576 647 True 285.00 285 75.1520 1240 1878 1 chr4D.!!$R2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 519 0.028902 GCCGCTGTCGTTTGTTTCTT 59.971 50.0 0.00 0.00 0.00 2.52 F
625 626 0.034896 ACGTGACTTGCTAAGGTGGG 59.965 55.0 0.00 0.00 0.00 4.61 F
815 863 0.036294 GTAACTGACTGGTGGGCCTC 60.036 60.0 4.53 0.00 35.27 4.70 F
857 905 0.313987 GGCCCAACGAAACAAGGAAG 59.686 55.0 0.00 0.00 0.00 3.46 F
858 906 0.318699 GCCCAACGAAACAAGGAAGC 60.319 55.0 0.00 0.00 0.00 3.86 F
859 907 0.313987 CCCAACGAAACAAGGAAGCC 59.686 55.0 0.00 0.00 0.00 4.35 F
953 1012 0.461961 ATAGCAGACCACTCTTCCGC 59.538 55.0 0.00 0.00 0.00 5.54 F
2708 7877 0.532862 AAACCGCGCATATGAGGGAG 60.533 55.0 22.24 15.02 0.00 4.30 F
2840 8111 0.751277 CACTGTGCACCTGTTTGGGA 60.751 55.0 15.69 0.00 41.11 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 7410 0.039256 CTTGGCATCCGTGTGGTTTG 60.039 55.000 0.00 0.00 36.30 2.93 R
2590 7756 1.166531 AGTCCGAAACAAGCACTGCC 61.167 55.000 0.00 0.00 0.00 4.85 R
2599 7765 7.789273 TGTGTAAATTTCTTAGTCCGAAACA 57.211 32.000 0.00 0.00 33.64 2.83 R
2821 8092 0.751277 TCCCAAACAGGTGCACAGTG 60.751 55.000 20.43 17.34 34.66 3.66 R
2840 8111 4.188937 ACATATTCTGCATTGATGGGGT 57.811 40.909 0.00 0.00 0.00 4.95 R
2858 8147 4.508861 GCTGTTGCTGAACAAATCAAACAT 59.491 37.500 0.00 0.00 41.62 2.71 R
2869 8160 2.608752 CCAATCAAGGCTGTTGCTGAAC 60.609 50.000 0.00 0.00 39.59 3.18 R
4243 10132 0.689623 CTCCTTCAGGACCTGTGCTT 59.310 55.000 21.06 0.00 39.78 3.91 R
4623 10563 0.954452 GGTGCCTCCACAAGTTCAAG 59.046 55.000 0.00 0.00 43.88 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.919348 CAAATTCAGAAAATGTTCGTGAATTTT 57.081 25.926 26.21 17.58 45.17 1.82
49 50 8.934507 TGTTCGTGAATTTTAAAAATGTTCCT 57.065 26.923 4.44 0.00 0.00 3.36
50 51 8.812329 TGTTCGTGAATTTTAAAAATGTTCCTG 58.188 29.630 4.44 1.03 0.00 3.86
51 52 7.401484 TCGTGAATTTTAAAAATGTTCCTGC 57.599 32.000 4.44 0.00 0.00 4.85
52 53 7.206687 TCGTGAATTTTAAAAATGTTCCTGCT 58.793 30.769 4.44 0.00 0.00 4.24
53 54 7.708752 TCGTGAATTTTAAAAATGTTCCTGCTT 59.291 29.630 4.44 0.00 0.00 3.91
54 55 8.334632 CGTGAATTTTAAAAATGTTCCTGCTTT 58.665 29.630 4.44 0.00 0.00 3.51
55 56 9.650371 GTGAATTTTAAAAATGTTCCTGCTTTC 57.350 29.630 4.44 0.81 0.00 2.62
56 57 8.835439 TGAATTTTAAAAATGTTCCTGCTTTCC 58.165 29.630 4.44 0.00 0.00 3.13
57 58 8.744568 AATTTTAAAAATGTTCCTGCTTTCCA 57.255 26.923 4.44 0.00 0.00 3.53
58 59 8.922931 ATTTTAAAAATGTTCCTGCTTTCCAT 57.077 26.923 4.44 0.00 0.00 3.41
59 60 8.744568 TTTTAAAAATGTTCCTGCTTTCCATT 57.255 26.923 0.00 0.00 0.00 3.16
60 61 7.727331 TTAAAAATGTTCCTGCTTTCCATTG 57.273 32.000 0.00 0.00 0.00 2.82
61 62 4.961438 AAATGTTCCTGCTTTCCATTGT 57.039 36.364 0.00 0.00 0.00 2.71
62 63 4.961438 AATGTTCCTGCTTTCCATTGTT 57.039 36.364 0.00 0.00 0.00 2.83
63 64 4.525912 ATGTTCCTGCTTTCCATTGTTC 57.474 40.909 0.00 0.00 0.00 3.18
64 65 3.295093 TGTTCCTGCTTTCCATTGTTCA 58.705 40.909 0.00 0.00 0.00 3.18
65 66 3.896888 TGTTCCTGCTTTCCATTGTTCAT 59.103 39.130 0.00 0.00 0.00 2.57
66 67 4.344679 TGTTCCTGCTTTCCATTGTTCATT 59.655 37.500 0.00 0.00 0.00 2.57
67 68 5.538053 TGTTCCTGCTTTCCATTGTTCATTA 59.462 36.000 0.00 0.00 0.00 1.90
68 69 5.643379 TCCTGCTTTCCATTGTTCATTAC 57.357 39.130 0.00 0.00 0.00 1.89
69 70 5.076182 TCCTGCTTTCCATTGTTCATTACA 58.924 37.500 0.00 0.00 34.12 2.41
105 106 7.887996 TGTCCATATTTTCAAATTTGTCTGC 57.112 32.000 17.47 0.76 0.00 4.26
106 107 7.669427 TGTCCATATTTTCAAATTTGTCTGCT 58.331 30.769 17.47 3.74 0.00 4.24
107 108 8.801299 TGTCCATATTTTCAAATTTGTCTGCTA 58.199 29.630 17.47 5.62 0.00 3.49
108 109 9.807649 GTCCATATTTTCAAATTTGTCTGCTAT 57.192 29.630 17.47 7.41 0.00 2.97
167 168 8.744568 AAATTTGAAAAATTTAGGGCTGTCAA 57.255 26.923 8.54 0.00 0.00 3.18
168 169 8.922931 AATTTGAAAAATTTAGGGCTGTCAAT 57.077 26.923 0.00 0.00 0.00 2.57
169 170 8.922931 ATTTGAAAAATTTAGGGCTGTCAATT 57.077 26.923 0.00 0.00 0.00 2.32
170 171 8.744568 TTTGAAAAATTTAGGGCTGTCAATTT 57.255 26.923 0.00 0.00 31.57 1.82
171 172 8.744568 TTGAAAAATTTAGGGCTGTCAATTTT 57.255 26.923 0.00 0.00 39.42 1.82
172 173 8.744568 TGAAAAATTTAGGGCTGTCAATTTTT 57.255 26.923 11.61 11.61 45.15 1.94
173 174 8.619546 TGAAAAATTTAGGGCTGTCAATTTTTG 58.380 29.630 14.86 0.00 43.70 2.44
174 175 8.518430 AAAAATTTAGGGCTGTCAATTTTTGT 57.482 26.923 11.21 0.00 42.80 2.83
175 176 8.518430 AAAATTTAGGGCTGTCAATTTTTGTT 57.482 26.923 0.00 0.00 36.04 2.83
176 177 7.728847 AATTTAGGGCTGTCAATTTTTGTTC 57.271 32.000 0.00 0.00 0.00 3.18
177 178 3.751479 AGGGCTGTCAATTTTTGTTCC 57.249 42.857 0.00 0.00 0.00 3.62
178 179 3.308401 AGGGCTGTCAATTTTTGTTCCT 58.692 40.909 0.00 0.00 0.00 3.36
179 180 3.070015 AGGGCTGTCAATTTTTGTTCCTG 59.930 43.478 0.00 0.00 0.00 3.86
180 181 3.069443 GGGCTGTCAATTTTTGTTCCTGA 59.931 43.478 0.00 0.00 0.00 3.86
181 182 4.262592 GGGCTGTCAATTTTTGTTCCTGAT 60.263 41.667 0.00 0.00 0.00 2.90
182 183 5.299949 GGCTGTCAATTTTTGTTCCTGATT 58.700 37.500 0.00 0.00 0.00 2.57
183 184 5.759763 GGCTGTCAATTTTTGTTCCTGATTT 59.240 36.000 0.00 0.00 0.00 2.17
184 185 6.260714 GGCTGTCAATTTTTGTTCCTGATTTT 59.739 34.615 0.00 0.00 0.00 1.82
185 186 7.347448 GCTGTCAATTTTTGTTCCTGATTTTC 58.653 34.615 0.00 0.00 0.00 2.29
186 187 7.011295 GCTGTCAATTTTTGTTCCTGATTTTCA 59.989 33.333 0.00 0.00 0.00 2.69
187 188 8.961294 TGTCAATTTTTGTTCCTGATTTTCAT 57.039 26.923 0.00 0.00 0.00 2.57
291 292 9.469807 AATGTTATGTTTTCGCAAAATGTAAGA 57.530 25.926 0.00 0.00 32.22 2.10
292 293 8.500837 TGTTATGTTTTCGCAAAATGTAAGAG 57.499 30.769 0.00 0.00 32.22 2.85
293 294 8.132362 TGTTATGTTTTCGCAAAATGTAAGAGT 58.868 29.630 0.00 0.00 32.22 3.24
294 295 8.964150 GTTATGTTTTCGCAAAATGTAAGAGTT 58.036 29.630 0.00 0.00 32.22 3.01
295 296 9.522804 TTATGTTTTCGCAAAATGTAAGAGTTT 57.477 25.926 0.00 0.00 32.22 2.66
296 297 7.820044 TGTTTTCGCAAAATGTAAGAGTTTT 57.180 28.000 0.00 0.00 32.22 2.43
297 298 7.670916 TGTTTTCGCAAAATGTAAGAGTTTTG 58.329 30.769 6.28 6.28 44.22 2.44
298 299 7.329717 TGTTTTCGCAAAATGTAAGAGTTTTGT 59.670 29.630 10.94 0.00 43.63 2.83
299 300 7.820044 TTTCGCAAAATGTAAGAGTTTTGTT 57.180 28.000 10.94 0.00 43.63 2.83
300 301 7.820044 TTCGCAAAATGTAAGAGTTTTGTTT 57.180 28.000 10.94 0.00 43.63 2.83
301 302 7.820044 TCGCAAAATGTAAGAGTTTTGTTTT 57.180 28.000 10.94 0.00 43.63 2.43
302 303 8.245701 TCGCAAAATGTAAGAGTTTTGTTTTT 57.754 26.923 10.94 0.00 43.63 1.94
369 370 5.582689 AAAGTTCATATAAACTGGGCTGC 57.417 39.130 0.00 0.00 39.40 5.25
370 371 3.555966 AGTTCATATAAACTGGGCTGCC 58.444 45.455 11.05 11.05 38.06 4.85
371 372 3.053693 AGTTCATATAAACTGGGCTGCCA 60.054 43.478 22.05 5.83 38.06 4.92
372 373 3.882102 TCATATAAACTGGGCTGCCAT 57.118 42.857 22.05 6.59 0.00 4.40
373 374 4.183223 TCATATAAACTGGGCTGCCATT 57.817 40.909 22.05 11.68 0.00 3.16
374 375 4.545678 TCATATAAACTGGGCTGCCATTT 58.454 39.130 22.05 18.37 0.00 2.32
375 376 4.961730 TCATATAAACTGGGCTGCCATTTT 59.038 37.500 22.05 17.00 0.00 1.82
376 377 3.615224 ATAAACTGGGCTGCCATTTTG 57.385 42.857 22.05 7.48 0.00 2.44
377 378 0.397564 AAACTGGGCTGCCATTTTGG 59.602 50.000 22.05 5.71 41.55 3.28
378 379 1.482748 AACTGGGCTGCCATTTTGGG 61.483 55.000 22.05 4.33 38.19 4.12
379 380 1.914764 CTGGGCTGCCATTTTGGGT 60.915 57.895 22.05 0.00 38.19 4.51
380 381 0.614415 CTGGGCTGCCATTTTGGGTA 60.614 55.000 22.05 0.00 38.19 3.69
381 382 0.902516 TGGGCTGCCATTTTGGGTAC 60.903 55.000 22.05 0.00 38.19 3.34
406 407 9.255029 ACCAAATATTTAGAAATTACTGTGGCT 57.745 29.630 0.00 0.00 0.00 4.75
410 411 6.604735 ATTTAGAAATTACTGTGGCTAGCG 57.395 37.500 9.00 0.00 0.00 4.26
411 412 3.887621 AGAAATTACTGTGGCTAGCGA 57.112 42.857 9.00 0.68 0.00 4.93
412 413 4.408182 AGAAATTACTGTGGCTAGCGAT 57.592 40.909 9.00 0.00 0.00 4.58
413 414 4.122776 AGAAATTACTGTGGCTAGCGATG 58.877 43.478 9.00 4.97 0.00 3.84
414 415 3.543680 AATTACTGTGGCTAGCGATGT 57.456 42.857 9.00 10.61 0.00 3.06
415 416 3.543680 ATTACTGTGGCTAGCGATGTT 57.456 42.857 9.00 0.00 0.00 2.71
416 417 2.293677 TACTGTGGCTAGCGATGTTG 57.706 50.000 9.00 0.00 0.00 3.33
417 418 0.608130 ACTGTGGCTAGCGATGTTGA 59.392 50.000 9.00 0.00 0.00 3.18
418 419 1.208052 ACTGTGGCTAGCGATGTTGAT 59.792 47.619 9.00 0.00 0.00 2.57
419 420 1.863454 CTGTGGCTAGCGATGTTGATC 59.137 52.381 9.00 0.00 0.00 2.92
420 421 1.206849 TGTGGCTAGCGATGTTGATCA 59.793 47.619 9.00 0.00 0.00 2.92
421 422 1.594862 GTGGCTAGCGATGTTGATCAC 59.405 52.381 9.00 3.96 0.00 3.06
422 423 0.855349 GGCTAGCGATGTTGATCACG 59.145 55.000 9.00 0.00 0.00 4.35
423 424 0.230769 GCTAGCGATGTTGATCACGC 59.769 55.000 17.79 17.79 42.31 5.34
424 425 0.500178 CTAGCGATGTTGATCACGCG 59.500 55.000 18.92 3.53 44.53 6.01
425 426 1.479420 TAGCGATGTTGATCACGCGC 61.479 55.000 18.92 18.27 46.29 6.86
426 427 3.080274 CGATGTTGATCACGCGCA 58.920 55.556 5.73 0.00 0.00 6.09
427 428 1.012998 CGATGTTGATCACGCGCAG 60.013 57.895 5.73 2.42 0.00 5.18
428 429 1.686566 CGATGTTGATCACGCGCAGT 61.687 55.000 5.73 3.19 0.00 4.40
429 430 1.277326 GATGTTGATCACGCGCAGTA 58.723 50.000 5.73 0.00 0.00 2.74
430 431 1.256376 GATGTTGATCACGCGCAGTAG 59.744 52.381 5.73 0.00 0.00 2.57
431 432 0.735978 TGTTGATCACGCGCAGTAGG 60.736 55.000 5.73 0.00 0.00 3.18
432 433 0.736325 GTTGATCACGCGCAGTAGGT 60.736 55.000 5.73 0.00 0.00 3.08
433 434 0.457853 TTGATCACGCGCAGTAGGTC 60.458 55.000 5.73 7.91 0.00 3.85
434 435 1.313091 TGATCACGCGCAGTAGGTCT 61.313 55.000 5.73 0.00 0.00 3.85
435 436 0.179134 GATCACGCGCAGTAGGTCTT 60.179 55.000 5.73 0.00 0.00 3.01
436 437 0.179134 ATCACGCGCAGTAGGTCTTC 60.179 55.000 5.73 0.00 0.00 2.87
437 438 2.152699 CACGCGCAGTAGGTCTTCG 61.153 63.158 5.73 0.00 36.02 3.79
438 439 2.330372 ACGCGCAGTAGGTCTTCGA 61.330 57.895 5.73 0.00 34.98 3.71
439 440 1.064296 CGCGCAGTAGGTCTTCGAT 59.936 57.895 8.75 0.00 34.98 3.59
440 441 0.525668 CGCGCAGTAGGTCTTCGATT 60.526 55.000 8.75 0.00 34.98 3.34
441 442 1.201343 GCGCAGTAGGTCTTCGATTC 58.799 55.000 0.30 0.00 34.98 2.52
442 443 1.469251 GCGCAGTAGGTCTTCGATTCA 60.469 52.381 0.30 0.00 34.98 2.57
443 444 2.876091 CGCAGTAGGTCTTCGATTCAA 58.124 47.619 0.00 0.00 34.98 2.69
444 445 2.854777 CGCAGTAGGTCTTCGATTCAAG 59.145 50.000 0.00 0.00 34.98 3.02
445 446 3.673594 CGCAGTAGGTCTTCGATTCAAGT 60.674 47.826 0.00 0.00 34.98 3.16
446 447 3.860536 GCAGTAGGTCTTCGATTCAAGTC 59.139 47.826 0.00 0.00 0.00 3.01
447 448 4.425520 CAGTAGGTCTTCGATTCAAGTCC 58.574 47.826 0.00 0.00 33.20 3.85
448 449 4.158764 CAGTAGGTCTTCGATTCAAGTCCT 59.841 45.833 14.12 14.12 42.47 3.85
449 450 3.878160 AGGTCTTCGATTCAAGTCCTC 57.122 47.619 0.00 0.00 37.35 3.71
450 451 2.164624 AGGTCTTCGATTCAAGTCCTCG 59.835 50.000 0.00 0.00 37.35 4.63
451 452 1.921230 GTCTTCGATTCAAGTCCTCGC 59.079 52.381 0.00 0.00 32.62 5.03
452 453 1.544246 TCTTCGATTCAAGTCCTCGCA 59.456 47.619 0.00 0.00 32.62 5.10
453 454 1.656095 CTTCGATTCAAGTCCTCGCAC 59.344 52.381 0.00 0.00 32.62 5.34
454 455 0.601057 TCGATTCAAGTCCTCGCACA 59.399 50.000 0.00 0.00 32.62 4.57
455 456 1.000394 TCGATTCAAGTCCTCGCACAA 60.000 47.619 0.00 0.00 32.62 3.33
456 457 1.798223 CGATTCAAGTCCTCGCACAAA 59.202 47.619 0.00 0.00 0.00 2.83
457 458 2.411547 CGATTCAAGTCCTCGCACAAAC 60.412 50.000 0.00 0.00 0.00 2.93
458 459 2.325583 TTCAAGTCCTCGCACAAACT 57.674 45.000 0.00 0.00 0.00 2.66
459 460 2.325583 TCAAGTCCTCGCACAAACTT 57.674 45.000 0.00 0.00 32.34 2.66
460 461 2.639065 TCAAGTCCTCGCACAAACTTT 58.361 42.857 0.00 0.00 29.78 2.66
461 462 3.799366 TCAAGTCCTCGCACAAACTTTA 58.201 40.909 0.00 0.00 29.78 1.85
462 463 3.807622 TCAAGTCCTCGCACAAACTTTAG 59.192 43.478 0.00 0.00 29.78 1.85
463 464 3.470645 AGTCCTCGCACAAACTTTAGT 57.529 42.857 0.00 0.00 0.00 2.24
464 465 3.805207 AGTCCTCGCACAAACTTTAGTT 58.195 40.909 0.00 0.00 40.50 2.24
466 467 4.638865 AGTCCTCGCACAAACTTTAGTTTT 59.361 37.500 5.16 0.00 45.07 2.43
467 468 5.124936 AGTCCTCGCACAAACTTTAGTTTTT 59.875 36.000 5.16 0.00 45.07 1.94
468 469 5.229260 GTCCTCGCACAAACTTTAGTTTTTG 59.771 40.000 14.21 14.21 45.07 2.44
469 470 4.502645 CCTCGCACAAACTTTAGTTTTTGG 59.497 41.667 18.11 11.11 45.07 3.28
470 471 4.770351 CGCACAAACTTTAGTTTTTGGG 57.230 40.909 18.04 18.04 45.07 4.12
473 474 6.918892 GCACAAACTTTAGTTTTTGGGAAT 57.081 33.333 18.11 0.00 45.07 3.01
474 475 7.315247 GCACAAACTTTAGTTTTTGGGAATT 57.685 32.000 18.11 0.00 45.07 2.17
475 476 7.757526 GCACAAACTTTAGTTTTTGGGAATTT 58.242 30.769 18.11 0.00 45.07 1.82
476 477 8.240682 GCACAAACTTTAGTTTTTGGGAATTTT 58.759 29.630 18.11 0.00 45.07 1.82
480 481 9.621629 AAACTTTAGTTTTTGGGAATTTTAGGG 57.378 29.630 2.10 0.00 45.07 3.53
481 482 8.555896 ACTTTAGTTTTTGGGAATTTTAGGGA 57.444 30.769 0.00 0.00 0.00 4.20
482 483 8.994500 ACTTTAGTTTTTGGGAATTTTAGGGAA 58.006 29.630 0.00 0.00 0.00 3.97
485 486 9.785982 TTAGTTTTTGGGAATTTTAGGGAATTG 57.214 29.630 0.00 0.00 29.75 2.32
486 487 7.811282 AGTTTTTGGGAATTTTAGGGAATTGT 58.189 30.769 0.00 0.00 29.75 2.71
487 488 8.278639 AGTTTTTGGGAATTTTAGGGAATTGTT 58.721 29.630 0.00 0.00 29.75 2.83
488 489 8.349245 GTTTTTGGGAATTTTAGGGAATTGTTG 58.651 33.333 0.00 0.00 29.75 3.33
489 490 6.755542 TTGGGAATTTTAGGGAATTGTTGT 57.244 33.333 0.00 0.00 29.75 3.32
490 491 6.755542 TGGGAATTTTAGGGAATTGTTGTT 57.244 33.333 0.00 0.00 29.75 2.83
491 492 7.142995 TGGGAATTTTAGGGAATTGTTGTTT 57.857 32.000 0.00 0.00 29.75 2.83
492 493 7.220740 TGGGAATTTTAGGGAATTGTTGTTTC 58.779 34.615 0.00 0.00 29.75 2.78
493 494 6.367695 GGGAATTTTAGGGAATTGTTGTTTCG 59.632 38.462 0.00 0.00 29.75 3.46
494 495 6.367695 GGAATTTTAGGGAATTGTTGTTTCGG 59.632 38.462 0.00 0.00 29.75 4.30
495 496 5.855740 TTTTAGGGAATTGTTGTTTCGGT 57.144 34.783 0.00 0.00 0.00 4.69
496 497 5.855740 TTTAGGGAATTGTTGTTTCGGTT 57.144 34.783 0.00 0.00 0.00 4.44
497 498 5.855740 TTAGGGAATTGTTGTTTCGGTTT 57.144 34.783 0.00 0.00 0.00 3.27
498 499 4.746535 AGGGAATTGTTGTTTCGGTTTT 57.253 36.364 0.00 0.00 0.00 2.43
499 500 4.438148 AGGGAATTGTTGTTTCGGTTTTG 58.562 39.130 0.00 0.00 0.00 2.44
500 501 3.001838 GGGAATTGTTGTTTCGGTTTTGC 59.998 43.478 0.00 0.00 0.00 3.68
501 502 3.001838 GGAATTGTTGTTTCGGTTTTGCC 59.998 43.478 0.00 0.00 0.00 4.52
510 511 2.719354 GGTTTTGCCGCTGTCGTT 59.281 55.556 0.00 0.00 0.00 3.85
511 512 1.065109 GGTTTTGCCGCTGTCGTTT 59.935 52.632 0.00 0.00 0.00 3.60
512 513 1.206115 GGTTTTGCCGCTGTCGTTTG 61.206 55.000 0.00 0.00 0.00 2.93
513 514 0.524604 GTTTTGCCGCTGTCGTTTGT 60.525 50.000 0.00 0.00 0.00 2.83
514 515 0.171455 TTTTGCCGCTGTCGTTTGTT 59.829 45.000 0.00 0.00 0.00 2.83
515 516 0.171455 TTTGCCGCTGTCGTTTGTTT 59.829 45.000 0.00 0.00 0.00 2.83
516 517 0.248296 TTGCCGCTGTCGTTTGTTTC 60.248 50.000 0.00 0.00 0.00 2.78
517 518 1.092921 TGCCGCTGTCGTTTGTTTCT 61.093 50.000 0.00 0.00 0.00 2.52
518 519 0.028902 GCCGCTGTCGTTTGTTTCTT 59.971 50.000 0.00 0.00 0.00 2.52
519 520 1.533129 GCCGCTGTCGTTTGTTTCTTT 60.533 47.619 0.00 0.00 0.00 2.52
520 521 2.286536 GCCGCTGTCGTTTGTTTCTTTA 60.287 45.455 0.00 0.00 0.00 1.85
521 522 3.608474 GCCGCTGTCGTTTGTTTCTTTAT 60.608 43.478 0.00 0.00 0.00 1.40
522 523 4.377635 GCCGCTGTCGTTTGTTTCTTTATA 60.378 41.667 0.00 0.00 0.00 0.98
523 524 5.672819 GCCGCTGTCGTTTGTTTCTTTATAT 60.673 40.000 0.00 0.00 0.00 0.86
524 525 6.455913 GCCGCTGTCGTTTGTTTCTTTATATA 60.456 38.462 0.00 0.00 0.00 0.86
525 526 7.627340 CCGCTGTCGTTTGTTTCTTTATATAT 58.373 34.615 0.00 0.00 0.00 0.86
526 527 7.582679 CCGCTGTCGTTTGTTTCTTTATATATG 59.417 37.037 0.00 0.00 0.00 1.78
527 528 7.582679 CGCTGTCGTTTGTTTCTTTATATATGG 59.417 37.037 0.00 0.00 0.00 2.74
528 529 7.376072 GCTGTCGTTTGTTTCTTTATATATGGC 59.624 37.037 0.00 0.00 0.00 4.40
529 530 7.403421 TGTCGTTTGTTTCTTTATATATGGCG 58.597 34.615 0.00 0.00 0.00 5.69
530 531 6.356190 GTCGTTTGTTTCTTTATATATGGCGC 59.644 38.462 0.00 0.00 0.00 6.53
531 532 6.259167 TCGTTTGTTTCTTTATATATGGCGCT 59.741 34.615 7.64 0.00 0.00 5.92
532 533 6.356977 CGTTTGTTTCTTTATATATGGCGCTG 59.643 38.462 7.64 0.00 0.00 5.18
533 534 5.356882 TGTTTCTTTATATATGGCGCTGC 57.643 39.130 7.64 0.00 0.00 5.25
534 535 4.819088 TGTTTCTTTATATATGGCGCTGCA 59.181 37.500 7.64 0.00 0.00 4.41
535 536 5.298026 TGTTTCTTTATATATGGCGCTGCAA 59.702 36.000 7.64 0.00 0.00 4.08
536 537 6.183360 TGTTTCTTTATATATGGCGCTGCAAA 60.183 34.615 7.64 0.00 0.00 3.68
537 538 6.573664 TTCTTTATATATGGCGCTGCAAAT 57.426 33.333 7.64 0.00 0.00 2.32
538 539 6.182039 TCTTTATATATGGCGCTGCAAATC 57.818 37.500 7.64 0.00 0.00 2.17
539 540 5.939883 TCTTTATATATGGCGCTGCAAATCT 59.060 36.000 7.64 0.00 0.00 2.40
540 541 7.102993 TCTTTATATATGGCGCTGCAAATCTA 58.897 34.615 7.64 0.00 0.00 1.98
541 542 6.908870 TTATATATGGCGCTGCAAATCTAG 57.091 37.500 7.64 0.00 0.00 2.43
542 543 1.229428 TATGGCGCTGCAAATCTAGC 58.771 50.000 7.64 0.00 36.60 3.42
543 544 0.749091 ATGGCGCTGCAAATCTAGCA 60.749 50.000 7.64 0.00 39.87 3.49
544 545 0.749091 TGGCGCTGCAAATCTAGCAT 60.749 50.000 7.64 0.00 41.82 3.79
545 546 0.317603 GGCGCTGCAAATCTAGCATG 60.318 55.000 7.64 0.00 41.82 4.06
546 547 0.659427 GCGCTGCAAATCTAGCATGA 59.341 50.000 0.00 0.00 41.82 3.07
547 548 1.333881 GCGCTGCAAATCTAGCATGAG 60.334 52.381 0.00 0.00 41.82 2.90
548 549 1.938577 CGCTGCAAATCTAGCATGAGT 59.061 47.619 0.00 0.00 41.82 3.41
549 550 2.286242 CGCTGCAAATCTAGCATGAGTG 60.286 50.000 0.00 0.00 41.82 3.51
550 551 2.681848 GCTGCAAATCTAGCATGAGTGT 59.318 45.455 0.00 0.00 41.82 3.55
551 552 3.128242 GCTGCAAATCTAGCATGAGTGTT 59.872 43.478 0.00 0.00 41.82 3.32
552 553 4.380233 GCTGCAAATCTAGCATGAGTGTTT 60.380 41.667 0.00 0.00 41.82 2.83
553 554 5.050644 TGCAAATCTAGCATGAGTGTTTG 57.949 39.130 0.00 2.01 37.02 2.93
554 555 4.520111 TGCAAATCTAGCATGAGTGTTTGT 59.480 37.500 0.00 0.00 37.02 2.83
555 556 5.009911 TGCAAATCTAGCATGAGTGTTTGTT 59.990 36.000 0.00 0.00 37.02 2.83
556 557 6.206438 TGCAAATCTAGCATGAGTGTTTGTTA 59.794 34.615 0.00 0.00 37.02 2.41
557 558 6.744537 GCAAATCTAGCATGAGTGTTTGTTAG 59.255 38.462 0.00 0.00 31.65 2.34
558 559 6.992063 AATCTAGCATGAGTGTTTGTTAGG 57.008 37.500 0.00 0.00 30.35 2.69
559 560 4.253685 TCTAGCATGAGTGTTTGTTAGGC 58.746 43.478 0.00 0.00 30.35 3.93
560 561 1.806542 AGCATGAGTGTTTGTTAGGCG 59.193 47.619 0.00 0.00 0.00 5.52
561 562 1.729149 GCATGAGTGTTTGTTAGGCGC 60.729 52.381 0.00 0.00 0.00 6.53
562 563 1.535028 CATGAGTGTTTGTTAGGCGCA 59.465 47.619 10.83 0.00 0.00 6.09
563 564 1.669604 TGAGTGTTTGTTAGGCGCAA 58.330 45.000 10.83 0.00 0.00 4.85
564 565 1.332375 TGAGTGTTTGTTAGGCGCAAC 59.668 47.619 10.83 6.71 0.00 4.17
565 566 0.306533 AGTGTTTGTTAGGCGCAACG 59.693 50.000 10.83 0.00 0.00 4.10
566 567 0.659123 GTGTTTGTTAGGCGCAACGG 60.659 55.000 10.83 0.00 0.00 4.44
575 576 3.558411 GCGCAACGGCTAGCTCAG 61.558 66.667 15.72 9.13 38.10 3.35
588 589 4.288670 CTAGCTCAGCACATGGATTTTG 57.711 45.455 0.00 0.00 0.00 2.44
589 590 2.522185 AGCTCAGCACATGGATTTTGT 58.478 42.857 0.00 0.00 0.00 2.83
590 591 2.895404 AGCTCAGCACATGGATTTTGTT 59.105 40.909 0.00 0.00 0.00 2.83
591 592 3.322828 AGCTCAGCACATGGATTTTGTTT 59.677 39.130 0.00 0.00 0.00 2.83
592 593 4.060205 GCTCAGCACATGGATTTTGTTTT 58.940 39.130 0.00 0.00 0.00 2.43
593 594 4.512571 GCTCAGCACATGGATTTTGTTTTT 59.487 37.500 0.00 0.00 0.00 1.94
594 595 5.559417 GCTCAGCACATGGATTTTGTTTTTG 60.559 40.000 0.00 0.00 0.00 2.44
595 596 4.272991 TCAGCACATGGATTTTGTTTTTGC 59.727 37.500 0.00 0.00 0.00 3.68
596 597 4.035324 CAGCACATGGATTTTGTTTTTGCA 59.965 37.500 0.00 0.00 0.00 4.08
597 598 4.822896 AGCACATGGATTTTGTTTTTGCAT 59.177 33.333 0.00 0.00 0.00 3.96
598 599 4.912766 GCACATGGATTTTGTTTTTGCATG 59.087 37.500 0.00 0.00 42.69 4.06
599 600 5.453648 CACATGGATTTTGTTTTTGCATGG 58.546 37.500 0.00 0.00 41.72 3.66
600 601 4.023021 ACATGGATTTTGTTTTTGCATGGC 60.023 37.500 0.00 0.00 41.72 4.40
601 602 2.547211 TGGATTTTGTTTTTGCATGGCG 59.453 40.909 0.00 0.00 0.00 5.69
602 603 2.573282 GATTTTGTTTTTGCATGGCGC 58.427 42.857 0.00 0.00 42.89 6.53
611 612 4.024143 GCATGGCGCAACACGTGA 62.024 61.111 25.01 0.00 46.11 4.35
612 613 2.127270 CATGGCGCAACACGTGAC 60.127 61.111 25.01 10.19 46.11 3.67
613 614 2.280797 ATGGCGCAACACGTGACT 60.281 55.556 25.01 5.75 46.11 3.41
614 615 1.891919 ATGGCGCAACACGTGACTT 60.892 52.632 25.01 3.65 46.11 3.01
615 616 2.052237 GGCGCAACACGTGACTTG 60.052 61.111 25.01 18.02 46.11 3.16
616 617 2.722188 GCGCAACACGTGACTTGC 60.722 61.111 25.76 25.76 46.11 4.01
617 618 3.014036 CGCAACACGTGACTTGCT 58.986 55.556 29.68 5.42 40.59 3.91
618 619 1.827315 GCGCAACACGTGACTTGCTA 61.827 55.000 29.68 0.00 46.11 3.49
619 620 0.579630 CGCAACACGTGACTTGCTAA 59.420 50.000 29.68 0.00 40.59 3.09
620 621 1.397190 CGCAACACGTGACTTGCTAAG 60.397 52.381 29.68 17.42 40.59 2.18
621 622 1.069906 GCAACACGTGACTTGCTAAGG 60.070 52.381 27.36 2.92 39.79 2.69
622 623 2.210116 CAACACGTGACTTGCTAAGGT 58.790 47.619 25.01 0.00 0.00 3.50
623 624 1.865865 ACACGTGACTTGCTAAGGTG 58.134 50.000 25.01 0.00 0.00 4.00
624 625 1.148310 CACGTGACTTGCTAAGGTGG 58.852 55.000 10.90 0.00 0.00 4.61
625 626 0.034896 ACGTGACTTGCTAAGGTGGG 59.965 55.000 0.00 0.00 0.00 4.61
645 646 0.798776 GTCGTGGGAGCAAATCACAG 59.201 55.000 0.00 0.00 43.80 3.66
729 731 2.361610 CTGCAAATGGACCGGCCT 60.362 61.111 14.76 0.00 37.63 5.19
730 732 2.361104 TGCAAATGGACCGGCCTC 60.361 61.111 14.76 0.00 37.63 4.70
754 769 1.371267 GAAACGCCGACCTTTTGCC 60.371 57.895 0.00 0.00 0.00 4.52
758 773 3.972276 GCCGACCTTTTGCCGCAA 61.972 61.111 0.38 0.38 0.00 4.85
763 778 2.429069 CCTTTTGCCGCAACGAGC 60.429 61.111 4.98 0.00 40.87 5.03
781 829 1.900545 GCGGCATATAGGAGGTCCCC 61.901 65.000 0.00 0.00 36.42 4.81
815 863 0.036294 GTAACTGACTGGTGGGCCTC 60.036 60.000 4.53 0.00 35.27 4.70
823 871 2.124507 CTGGTGGGCCTCCGAGAAAA 62.125 60.000 19.16 0.18 35.24 2.29
832 880 1.512926 CTCCGAGAAAACTGTGTGGG 58.487 55.000 0.00 0.00 0.00 4.61
839 887 2.076863 GAAAACTGTGTGGGATCTCGG 58.923 52.381 0.00 0.00 0.00 4.63
851 899 0.672401 GATCTCGGCCCAACGAAACA 60.672 55.000 0.00 0.00 42.98 2.83
853 901 0.882927 TCTCGGCCCAACGAAACAAG 60.883 55.000 0.00 0.00 42.98 3.16
854 902 1.852067 CTCGGCCCAACGAAACAAGG 61.852 60.000 0.00 0.00 42.98 3.61
855 903 1.894756 CGGCCCAACGAAACAAGGA 60.895 57.895 0.00 0.00 35.47 3.36
856 904 1.448922 CGGCCCAACGAAACAAGGAA 61.449 55.000 0.00 0.00 35.47 3.36
857 905 0.313987 GGCCCAACGAAACAAGGAAG 59.686 55.000 0.00 0.00 0.00 3.46
858 906 0.318699 GCCCAACGAAACAAGGAAGC 60.319 55.000 0.00 0.00 0.00 3.86
859 907 0.313987 CCCAACGAAACAAGGAAGCC 59.686 55.000 0.00 0.00 0.00 4.35
860 908 1.028905 CCAACGAAACAAGGAAGCCA 58.971 50.000 0.00 0.00 0.00 4.75
861 909 1.613437 CCAACGAAACAAGGAAGCCAT 59.387 47.619 0.00 0.00 0.00 4.40
862 910 2.607771 CCAACGAAACAAGGAAGCCATG 60.608 50.000 0.00 0.00 0.00 3.66
863 911 1.981256 ACGAAACAAGGAAGCCATGT 58.019 45.000 0.00 0.00 37.01 3.21
864 912 1.608590 ACGAAACAAGGAAGCCATGTG 59.391 47.619 0.00 0.00 35.53 3.21
865 913 1.608590 CGAAACAAGGAAGCCATGTGT 59.391 47.619 0.00 0.00 35.53 3.72
866 914 2.811431 CGAAACAAGGAAGCCATGTGTA 59.189 45.455 0.00 0.00 35.53 2.90
867 915 3.440173 CGAAACAAGGAAGCCATGTGTAT 59.560 43.478 0.00 0.00 35.53 2.29
868 916 4.634004 CGAAACAAGGAAGCCATGTGTATA 59.366 41.667 0.00 0.00 35.53 1.47
869 917 5.123186 CGAAACAAGGAAGCCATGTGTATAA 59.877 40.000 0.00 0.00 35.53 0.98
870 918 6.183360 CGAAACAAGGAAGCCATGTGTATAAT 60.183 38.462 0.00 0.00 35.53 1.28
871 919 6.455360 AACAAGGAAGCCATGTGTATAATG 57.545 37.500 0.00 0.00 35.53 1.90
872 920 4.889409 ACAAGGAAGCCATGTGTATAATGG 59.111 41.667 0.00 0.00 46.29 3.16
890 938 0.835941 GGCCATCAGTCCAGAGTCAT 59.164 55.000 0.00 0.00 0.00 3.06
891 939 1.202627 GGCCATCAGTCCAGAGTCATC 60.203 57.143 0.00 0.00 0.00 2.92
892 940 1.202627 GCCATCAGTCCAGAGTCATCC 60.203 57.143 0.00 0.00 0.00 3.51
949 1008 6.547510 AGAAAAACAAATAGCAGACCACTCTT 59.452 34.615 0.00 0.00 0.00 2.85
950 1009 5.948992 AAACAAATAGCAGACCACTCTTC 57.051 39.130 0.00 0.00 0.00 2.87
952 1011 2.932614 CAAATAGCAGACCACTCTTCCG 59.067 50.000 0.00 0.00 0.00 4.30
953 1012 0.461961 ATAGCAGACCACTCTTCCGC 59.538 55.000 0.00 0.00 0.00 5.54
954 1013 0.612174 TAGCAGACCACTCTTCCGCT 60.612 55.000 0.00 0.00 30.46 5.52
1035 1108 2.613390 GTTCACCAACGTGGACTCC 58.387 57.895 10.46 0.00 44.14 3.85
1036 1109 1.068417 TTCACCAACGTGGACTCCG 59.932 57.895 10.46 0.00 40.96 4.63
1037 1110 2.981977 TTCACCAACGTGGACTCCGC 62.982 60.000 10.46 0.00 40.96 5.54
1122 1195 2.042831 GCTCACCCACATCTGCACC 61.043 63.158 0.00 0.00 0.00 5.01
1125 1198 1.078214 CACCCACATCTGCACCGAT 60.078 57.895 0.00 0.00 0.00 4.18
1182 1255 1.973281 CACGCCCCTGCACAAGATT 60.973 57.895 0.00 0.00 37.32 2.40
2046 7167 1.379044 GGAGCCAGGGAACACCATG 60.379 63.158 0.00 0.00 43.89 3.66
2070 7198 1.405821 GAGATCCGAGACACCATCGTT 59.594 52.381 0.00 0.00 38.50 3.85
2164 7300 6.857964 GTCCATGACTAAATGTGTGACTTTTG 59.142 38.462 0.00 0.00 29.82 2.44
2165 7301 6.545666 TCCATGACTAAATGTGTGACTTTTGT 59.454 34.615 0.00 0.00 29.82 2.83
2363 7512 5.463061 AGTTCTTTCCATTTCATGTTTTGCG 59.537 36.000 0.00 0.00 0.00 4.85
2375 7524 6.735678 TCATGTTTTGCGTACATTCATACT 57.264 33.333 0.00 0.00 34.11 2.12
2387 7536 6.475727 CGTACATTCATACTGGTTTCCACTAG 59.524 42.308 0.00 0.00 37.52 2.57
2388 7537 6.374417 ACATTCATACTGGTTTCCACTAGT 57.626 37.500 0.00 0.00 46.03 2.57
2441 7592 3.508793 AGATTTTGTTCACTGCAGATGGG 59.491 43.478 23.35 6.91 0.00 4.00
2451 7602 2.173519 CTGCAGATGGGGTGTTTTCAT 58.826 47.619 8.42 0.00 0.00 2.57
2458 7609 3.593442 TGGGGTGTTTTCATCTTCTGT 57.407 42.857 0.00 0.00 0.00 3.41
2480 7631 9.791820 TCTGTTTGATTAATTGCAGATAATGTG 57.208 29.630 9.91 0.00 0.00 3.21
2483 7637 8.537223 GTTTGATTAATTGCAGATAATGTGCTG 58.463 33.333 9.91 0.00 41.78 4.41
2511 7665 3.942829 TCTCCTGATGTCGATTGCTTTT 58.057 40.909 0.00 0.00 0.00 2.27
2520 7674 7.521529 TGATGTCGATTGCTTTTCTTCTTTAG 58.478 34.615 0.00 0.00 0.00 1.85
2528 7682 6.699575 TGCTTTTCTTCTTTAGCTCTTGTT 57.300 33.333 0.00 0.00 34.77 2.83
2529 7683 7.801716 TGCTTTTCTTCTTTAGCTCTTGTTA 57.198 32.000 0.00 0.00 34.77 2.41
2545 7699 6.293735 GCTCTTGTTATATAGCGTCTCTCACT 60.294 42.308 0.00 0.00 0.00 3.41
2590 7756 2.412870 TGTCGATGTTGTAAGTGGCAG 58.587 47.619 0.00 0.00 0.00 4.85
2610 7776 1.508632 GCAGTGCTTGTTTCGGACTA 58.491 50.000 8.18 0.00 31.54 2.59
2651 7818 2.238521 CCAAACACATTGCCACCTACT 58.761 47.619 0.00 0.00 37.73 2.57
2702 7871 6.530181 TCATATTACTCTAAACCGCGCATATG 59.470 38.462 8.75 8.74 0.00 1.78
2706 7875 1.148310 CTAAACCGCGCATATGAGGG 58.852 55.000 15.25 15.25 0.00 4.30
2708 7877 0.532862 AAACCGCGCATATGAGGGAG 60.533 55.000 22.24 15.02 0.00 4.30
2714 7883 1.069204 GCGCATATGAGGGAGTTCTCA 59.931 52.381 6.97 0.00 46.32 3.27
2796 8057 5.702865 ACACATCTCACAAAATATGCACAC 58.297 37.500 0.00 0.00 0.00 3.82
2803 8064 3.088532 ACAAAATATGCACACGGTCCAT 58.911 40.909 0.00 0.00 0.00 3.41
2806 8077 2.418368 ATATGCACACGGTCCATTGT 57.582 45.000 0.00 0.00 0.00 2.71
2820 8091 9.058174 CACGGTCCATTGTATATATTTGGTAAA 57.942 33.333 0.00 0.00 0.00 2.01
2821 8092 9.059260 ACGGTCCATTGTATATATTTGGTAAAC 57.941 33.333 0.00 1.88 0.00 2.01
2836 8107 2.425668 GGTAAACACTGTGCACCTGTTT 59.574 45.455 30.35 30.35 40.40 2.83
2840 8111 0.751277 CACTGTGCACCTGTTTGGGA 60.751 55.000 15.69 0.00 41.11 4.37
2851 8122 1.826720 CTGTTTGGGACCCCATCAATG 59.173 52.381 8.45 0.00 46.64 2.82
2858 8147 2.158475 GGGACCCCATCAATGCAGAATA 60.158 50.000 0.00 0.00 35.81 1.75
2869 8160 8.547894 CCATCAATGCAGAATATGTTTGATTTG 58.452 33.333 5.40 0.00 39.65 2.32
2890 8181 1.250328 TCAGCAACAGCCTTGATTGG 58.750 50.000 0.00 0.00 0.00 3.16
2968 8281 6.668645 AGTGAGATCTCTGGTGATACTAACT 58.331 40.000 22.95 10.58 0.00 2.24
3011 8328 6.319658 AGTGCATACAAGGTATCAATTTCTGG 59.680 38.462 0.00 0.00 0.00 3.86
3063 8403 7.949903 TGTTACTTTCTGCTAATTTCACGTA 57.050 32.000 0.00 0.00 0.00 3.57
3100 8440 4.805719 CGTTGATTTGCATAGCTCTGTCTA 59.194 41.667 0.00 0.00 0.00 2.59
3164 8600 5.003804 GCCATCAGGTTTTCTCTTCTTACA 58.996 41.667 0.00 0.00 37.19 2.41
3264 8740 2.507058 TCTTGCTCATTCCTGCCTACAT 59.493 45.455 0.00 0.00 0.00 2.29
3409 8888 1.561643 TAGCCACCAGGTCTTCTCTG 58.438 55.000 0.00 0.00 37.19 3.35
3464 8943 1.269012 ATTCTGGGGGTTGCATGTTG 58.731 50.000 0.00 0.00 0.00 3.33
3473 8952 3.244181 GGGGTTGCATGTTGATTTCAGTT 60.244 43.478 0.00 0.00 0.00 3.16
3474 8953 4.379652 GGGTTGCATGTTGATTTCAGTTT 58.620 39.130 0.00 0.00 0.00 2.66
3478 8957 6.478344 GGTTGCATGTTGATTTCAGTTTGTTA 59.522 34.615 0.00 0.00 0.00 2.41
3482 8961 7.924947 TGCATGTTGATTTCAGTTTGTTATGAA 59.075 29.630 0.00 0.00 33.73 2.57
3503 8982 7.552050 TGAAATTTGTTATGAATTCTGGGGT 57.448 32.000 7.05 0.00 0.00 4.95
3746 9320 3.181426 TGGGAAGCATTGGCATCTCATAT 60.181 43.478 0.00 0.00 42.85 1.78
3747 9321 3.442977 GGGAAGCATTGGCATCTCATATC 59.557 47.826 0.00 0.00 44.61 1.63
3964 9819 5.803967 GTCTGAAAAATGTGATCATCAAGCC 59.196 40.000 0.00 0.00 32.56 4.35
4085 9974 1.460255 CTTGGGGAGGTTGCCTTCA 59.540 57.895 0.00 0.00 31.76 3.02
4155 10044 0.839946 ATGGCTAACCCGAGCTTCAT 59.160 50.000 0.00 0.00 42.43 2.57
4207 10096 4.861102 AGCAAAGCAAGCTTCTAACAAT 57.139 36.364 7.88 0.00 39.87 2.71
4243 10132 1.019278 GCGAAATGGTGCTTCTCGGA 61.019 55.000 0.00 0.00 0.00 4.55
4350 10239 8.233190 GCAGATTCACAACATAGCTTAATATCC 58.767 37.037 0.00 0.00 0.00 2.59
4398 10311 3.066291 TGGTGGTACTTACATTGCAGG 57.934 47.619 0.00 0.00 0.00 4.85
4401 10314 2.678336 GTGGTACTTACATTGCAGGCTC 59.322 50.000 0.00 0.00 0.00 4.70
4414 10329 2.742053 TGCAGGCTCTGTTAAATTCGTC 59.258 45.455 4.45 0.00 33.43 4.20
4484 10424 2.639065 CTTGCCGCTTTCCCATAGTAA 58.361 47.619 0.00 0.00 0.00 2.24
4494 10434 6.062095 GCTTTCCCATAGTAAATGCTCCTTA 58.938 40.000 0.00 0.00 0.00 2.69
4593 10533 9.995003 AATTATCATCAGAACTCTATGGTCTTC 57.005 33.333 0.00 0.00 40.40 2.87
4639 10579 2.846193 TGTACTTGAACTTGTGGAGGC 58.154 47.619 0.00 0.00 0.00 4.70
4657 10597 1.472552 GGCACCATTTTATTTCGGGCC 60.473 52.381 0.00 0.00 0.00 5.80
4662 10602 4.401202 CACCATTTTATTTCGGGCCTTACT 59.599 41.667 0.84 0.00 0.00 2.24
4668 10608 1.173043 TTTCGGGCCTTACTTGCATG 58.827 50.000 0.84 0.00 0.00 4.06
4674 10614 2.012673 GGCCTTACTTGCATGTCTGAG 58.987 52.381 8.74 6.18 0.00 3.35
4742 10682 2.005451 CTCGACATGCCAAAGAGGAAG 58.995 52.381 0.00 0.00 41.22 3.46
4748 10688 0.321298 TGCCAAAGAGGAAGCGTACC 60.321 55.000 0.00 0.00 41.22 3.34
4754 10694 1.183549 AGAGGAAGCGTACCGATGTT 58.816 50.000 0.00 0.00 0.00 2.71
4853 10794 3.935203 CGACCTGCATGATTCTGTAAACT 59.065 43.478 0.00 0.00 0.00 2.66
4855 10796 5.580691 CGACCTGCATGATTCTGTAAACTAA 59.419 40.000 0.00 0.00 0.00 2.24
4864 10805 7.744087 TGATTCTGTAAACTAACATGTGCTT 57.256 32.000 0.00 0.00 0.00 3.91
4899 10850 3.645884 TGCTAGGTACACGTGAGAAAAC 58.354 45.455 25.01 11.30 0.00 2.43
4977 10928 8.847444 AGTTGATCTCATTTTTGCGATAATTC 57.153 30.769 0.00 0.00 0.00 2.17
4989 10940 3.446873 TGCGATAATTCAAAATGGTGCCT 59.553 39.130 0.00 0.00 0.00 4.75
4991 10942 5.126222 TGCGATAATTCAAAATGGTGCCTAA 59.874 36.000 0.00 0.00 0.00 2.69
4996 10947 3.439857 TCAAAATGGTGCCTAAGCTCT 57.560 42.857 0.00 0.00 40.80 4.09
5003 10954 1.470494 GGTGCCTAAGCTCTTTTGCTC 59.530 52.381 0.00 0.00 43.24 4.26
5005 10956 1.352352 TGCCTAAGCTCTTTTGCTCCT 59.648 47.619 0.00 0.00 43.24 3.69
5022 10973 4.202461 TGCTCCTGGTGAACAGTAAATTCT 60.202 41.667 0.00 0.00 46.06 2.40
5086 11046 5.355596 AGATGAGAGAATTTTCTAGGTGCG 58.644 41.667 0.00 0.00 37.73 5.34
5127 11087 1.667724 GGACATTTCACGAGCTCATGG 59.332 52.381 15.40 2.02 0.00 3.66
5188 11148 7.741652 GCACTTTTTGAAAGTTTCTTTGACAAG 59.258 33.333 16.33 11.29 0.00 3.16
5208 11168 7.066766 TGACAAGCCAAATTTGTTATTTTTGCT 59.933 29.630 16.73 11.96 38.78 3.91
5220 11180 5.237561 TGTTATTTTTGCTACGAGCTTGTCA 59.762 36.000 10.71 0.00 42.97 3.58
5236 11196 3.428746 TGTCAAAATGTCCAAACACCG 57.571 42.857 0.00 0.00 38.48 4.94
5245 11205 4.457834 TGTCCAAACACCGTGAAATTTT 57.542 36.364 5.28 0.00 0.00 1.82
5266 11226 2.758423 TGCACGCACCTAGAAGATTCTA 59.242 45.455 2.49 2.49 38.70 2.10
5279 11239 7.387397 CCTAGAAGATTCTATCAACTTCCATGC 59.613 40.741 2.88 0.00 38.95 4.06
5285 11245 7.552687 AGATTCTATCAACTTCCATGCGTAAAA 59.447 33.333 0.00 0.00 0.00 1.52
5286 11246 7.624360 TTCTATCAACTTCCATGCGTAAAAT 57.376 32.000 0.00 0.00 0.00 1.82
5287 11247 7.624360 TCTATCAACTTCCATGCGTAAAATT 57.376 32.000 0.00 0.00 0.00 1.82
5294 11254 6.744112 ACTTCCATGCGTAAAATTTTCAGAA 58.256 32.000 6.72 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.172951 CGAACATTTTCTGAATTTGCGAACA 59.827 36.000 0.00 0.00 0.00 3.18
6 7 5.173131 ACGAACATTTTCTGAATTTGCGAAC 59.827 36.000 0.00 0.00 0.00 3.95
10 11 6.509317 TTCACGAACATTTTCTGAATTTGC 57.491 33.333 0.00 0.00 30.46 3.68
37 38 6.825610 ACAATGGAAAGCAGGAACATTTTTA 58.174 32.000 0.00 0.00 30.00 1.52
43 44 3.295093 TGAACAATGGAAAGCAGGAACA 58.705 40.909 0.00 0.00 0.00 3.18
44 45 4.525912 ATGAACAATGGAAAGCAGGAAC 57.474 40.909 0.00 0.00 0.00 3.62
45 46 5.538053 TGTAATGAACAATGGAAAGCAGGAA 59.462 36.000 0.00 0.00 34.29 3.36
47 48 5.389859 TGTAATGAACAATGGAAAGCAGG 57.610 39.130 0.00 0.00 34.29 4.85
79 80 8.938906 GCAGACAAATTTGAAAATATGGACAAT 58.061 29.630 24.64 0.00 0.00 2.71
80 81 8.149647 AGCAGACAAATTTGAAAATATGGACAA 58.850 29.630 24.64 0.00 0.00 3.18
81 82 7.669427 AGCAGACAAATTTGAAAATATGGACA 58.331 30.769 24.64 0.00 0.00 4.02
82 83 9.807649 ATAGCAGACAAATTTGAAAATATGGAC 57.192 29.630 24.64 3.11 0.00 4.02
141 142 9.838339 TTGACAGCCCTAAATTTTTCAAATTTA 57.162 25.926 11.90 11.90 32.64 1.40
142 143 8.744568 TTGACAGCCCTAAATTTTTCAAATTT 57.255 26.923 11.03 11.03 34.55 1.82
143 144 8.922931 ATTGACAGCCCTAAATTTTTCAAATT 57.077 26.923 0.00 0.00 0.00 1.82
144 145 8.922931 AATTGACAGCCCTAAATTTTTCAAAT 57.077 26.923 0.00 0.00 0.00 2.32
145 146 8.744568 AAATTGACAGCCCTAAATTTTTCAAA 57.255 26.923 0.00 0.00 30.10 2.69
146 147 8.744568 AAAATTGACAGCCCTAAATTTTTCAA 57.255 26.923 0.00 0.00 38.44 2.69
147 148 8.619546 CAAAAATTGACAGCCCTAAATTTTTCA 58.380 29.630 15.04 0.00 44.36 2.69
148 149 8.620416 ACAAAAATTGACAGCCCTAAATTTTTC 58.380 29.630 15.04 0.00 44.36 2.29
149 150 8.518430 ACAAAAATTGACAGCCCTAAATTTTT 57.482 26.923 13.33 13.33 45.81 1.94
150 151 8.518430 AACAAAAATTGACAGCCCTAAATTTT 57.482 26.923 0.00 0.00 41.55 1.82
151 152 7.228507 GGAACAAAAATTGACAGCCCTAAATTT 59.771 33.333 0.00 0.00 34.54 1.82
152 153 6.710295 GGAACAAAAATTGACAGCCCTAAATT 59.290 34.615 0.00 0.00 0.00 1.82
153 154 6.043127 AGGAACAAAAATTGACAGCCCTAAAT 59.957 34.615 0.00 0.00 0.00 1.40
154 155 5.365314 AGGAACAAAAATTGACAGCCCTAAA 59.635 36.000 0.00 0.00 0.00 1.85
155 156 4.898861 AGGAACAAAAATTGACAGCCCTAA 59.101 37.500 0.00 0.00 0.00 2.69
156 157 4.280677 CAGGAACAAAAATTGACAGCCCTA 59.719 41.667 0.00 0.00 0.00 3.53
157 158 3.070015 CAGGAACAAAAATTGACAGCCCT 59.930 43.478 0.00 0.00 0.00 5.19
158 159 3.069443 TCAGGAACAAAAATTGACAGCCC 59.931 43.478 0.00 0.00 0.00 5.19
159 160 4.320608 TCAGGAACAAAAATTGACAGCC 57.679 40.909 0.00 0.00 0.00 4.85
160 161 6.849588 AAATCAGGAACAAAAATTGACAGC 57.150 33.333 0.00 0.00 0.00 4.40
161 162 8.422973 TGAAAATCAGGAACAAAAATTGACAG 57.577 30.769 0.00 0.00 0.00 3.51
162 163 8.961294 ATGAAAATCAGGAACAAAAATTGACA 57.039 26.923 0.00 0.00 0.00 3.58
265 266 9.469807 TCTTACATTTTGCGAAAACATAACATT 57.530 25.926 2.54 0.00 32.37 2.71
266 267 9.128107 CTCTTACATTTTGCGAAAACATAACAT 57.872 29.630 2.54 0.00 32.37 2.71
267 268 8.132362 ACTCTTACATTTTGCGAAAACATAACA 58.868 29.630 2.54 0.00 32.37 2.41
268 269 8.502161 ACTCTTACATTTTGCGAAAACATAAC 57.498 30.769 2.54 0.00 32.37 1.89
269 270 9.522804 AAACTCTTACATTTTGCGAAAACATAA 57.477 25.926 2.54 2.37 32.37 1.90
270 271 9.522804 AAAACTCTTACATTTTGCGAAAACATA 57.477 25.926 2.54 0.00 32.37 2.29
271 272 8.327429 CAAAACTCTTACATTTTGCGAAAACAT 58.673 29.630 2.54 0.00 38.55 2.71
272 273 7.329717 ACAAAACTCTTACATTTTGCGAAAACA 59.670 29.630 2.54 0.00 45.55 2.83
273 274 7.671827 ACAAAACTCTTACATTTTGCGAAAAC 58.328 30.769 2.54 0.00 45.55 2.43
274 275 7.820044 ACAAAACTCTTACATTTTGCGAAAA 57.180 28.000 2.54 0.00 45.55 2.29
275 276 7.820044 AACAAAACTCTTACATTTTGCGAAA 57.180 28.000 0.53 0.53 45.55 3.46
276 277 7.820044 AAACAAAACTCTTACATTTTGCGAA 57.180 28.000 8.87 0.00 45.55 4.70
277 278 7.820044 AAAACAAAACTCTTACATTTTGCGA 57.180 28.000 8.87 0.00 45.55 5.10
345 346 6.398095 GCAGCCCAGTTTATATGAACTTTTT 58.602 36.000 10.02 0.00 37.76 1.94
346 347 5.105351 GGCAGCCCAGTTTATATGAACTTTT 60.105 40.000 10.02 0.00 37.76 2.27
347 348 4.402474 GGCAGCCCAGTTTATATGAACTTT 59.598 41.667 10.02 0.00 37.76 2.66
348 349 3.954258 GGCAGCCCAGTTTATATGAACTT 59.046 43.478 10.02 0.00 37.76 2.66
349 350 3.053693 TGGCAGCCCAGTTTATATGAACT 60.054 43.478 9.64 7.05 40.37 3.01
350 351 3.287222 TGGCAGCCCAGTTTATATGAAC 58.713 45.455 9.64 2.21 35.79 3.18
351 352 3.660970 TGGCAGCCCAGTTTATATGAA 57.339 42.857 9.64 0.00 35.79 2.57
352 353 3.882102 ATGGCAGCCCAGTTTATATGA 57.118 42.857 9.64 0.00 46.24 2.15
353 354 4.942761 AAATGGCAGCCCAGTTTATATG 57.057 40.909 9.64 0.00 46.52 1.78
360 361 1.914764 CCCAAAATGGCAGCCCAGT 60.915 57.895 9.64 0.00 46.24 4.00
361 362 0.614415 TACCCAAAATGGCAGCCCAG 60.614 55.000 9.64 0.00 46.24 4.45
363 364 1.613317 GGTACCCAAAATGGCAGCCC 61.613 60.000 9.64 0.00 35.79 5.19
364 365 0.902516 TGGTACCCAAAATGGCAGCC 60.903 55.000 10.07 3.66 35.79 4.85
365 366 0.972883 TTGGTACCCAAAATGGCAGC 59.027 50.000 10.07 0.00 40.92 5.25
380 381 9.255029 AGCCACAGTAATTTCTAAATATTTGGT 57.745 29.630 11.05 0.00 0.00 3.67
384 385 8.774586 CGCTAGCCACAGTAATTTCTAAATATT 58.225 33.333 9.66 0.00 0.00 1.28
385 386 8.148351 TCGCTAGCCACAGTAATTTCTAAATAT 58.852 33.333 9.66 0.00 0.00 1.28
386 387 7.494211 TCGCTAGCCACAGTAATTTCTAAATA 58.506 34.615 9.66 0.00 0.00 1.40
387 388 6.346096 TCGCTAGCCACAGTAATTTCTAAAT 58.654 36.000 9.66 0.00 0.00 1.40
388 389 5.726397 TCGCTAGCCACAGTAATTTCTAAA 58.274 37.500 9.66 0.00 0.00 1.85
389 390 5.333299 TCGCTAGCCACAGTAATTTCTAA 57.667 39.130 9.66 0.00 0.00 2.10
390 391 4.994907 TCGCTAGCCACAGTAATTTCTA 57.005 40.909 9.66 0.00 0.00 2.10
391 392 3.887621 TCGCTAGCCACAGTAATTTCT 57.112 42.857 9.66 0.00 0.00 2.52
392 393 3.871594 ACATCGCTAGCCACAGTAATTTC 59.128 43.478 9.66 0.00 0.00 2.17
393 394 3.873910 ACATCGCTAGCCACAGTAATTT 58.126 40.909 9.66 0.00 0.00 1.82
394 395 3.543680 ACATCGCTAGCCACAGTAATT 57.456 42.857 9.66 0.00 0.00 1.40
395 396 3.118775 TCAACATCGCTAGCCACAGTAAT 60.119 43.478 9.66 0.00 0.00 1.89
396 397 2.232696 TCAACATCGCTAGCCACAGTAA 59.767 45.455 9.66 0.00 0.00 2.24
397 398 1.822371 TCAACATCGCTAGCCACAGTA 59.178 47.619 9.66 0.00 0.00 2.74
398 399 0.608130 TCAACATCGCTAGCCACAGT 59.392 50.000 9.66 0.00 0.00 3.55
399 400 1.863454 GATCAACATCGCTAGCCACAG 59.137 52.381 9.66 0.00 0.00 3.66
400 401 1.206849 TGATCAACATCGCTAGCCACA 59.793 47.619 9.66 0.00 0.00 4.17
401 402 1.594862 GTGATCAACATCGCTAGCCAC 59.405 52.381 9.66 4.19 36.70 5.01
402 403 1.802508 CGTGATCAACATCGCTAGCCA 60.803 52.381 9.66 0.00 37.39 4.75
403 404 0.855349 CGTGATCAACATCGCTAGCC 59.145 55.000 9.66 0.00 37.39 3.93
404 405 0.230769 GCGTGATCAACATCGCTAGC 59.769 55.000 18.09 4.06 41.70 3.42
405 406 0.500178 CGCGTGATCAACATCGCTAG 59.500 55.000 21.40 7.60 42.25 3.42
406 407 1.479420 GCGCGTGATCAACATCGCTA 61.479 55.000 21.40 0.00 43.90 4.26
407 408 2.802667 GCGCGTGATCAACATCGCT 61.803 57.895 21.40 0.00 43.90 4.93
408 409 2.350091 GCGCGTGATCAACATCGC 60.350 61.111 16.07 16.07 42.28 4.58
409 410 1.012998 CTGCGCGTGATCAACATCG 60.013 57.895 8.43 0.00 0.00 3.84
410 411 1.256376 CTACTGCGCGTGATCAACATC 59.744 52.381 8.43 0.00 0.00 3.06
411 412 1.280982 CTACTGCGCGTGATCAACAT 58.719 50.000 8.43 0.00 0.00 2.71
412 413 0.735978 CCTACTGCGCGTGATCAACA 60.736 55.000 8.43 0.00 0.00 3.33
413 414 0.736325 ACCTACTGCGCGTGATCAAC 60.736 55.000 8.43 0.00 0.00 3.18
414 415 0.457853 GACCTACTGCGCGTGATCAA 60.458 55.000 8.43 0.00 0.00 2.57
415 416 1.138883 GACCTACTGCGCGTGATCA 59.861 57.895 8.43 0.00 0.00 2.92
416 417 0.179134 AAGACCTACTGCGCGTGATC 60.179 55.000 8.43 8.85 0.00 2.92
417 418 0.179134 GAAGACCTACTGCGCGTGAT 60.179 55.000 8.43 0.00 0.00 3.06
418 419 1.211969 GAAGACCTACTGCGCGTGA 59.788 57.895 8.43 0.00 0.00 4.35
419 420 2.152699 CGAAGACCTACTGCGCGTG 61.153 63.158 8.43 3.52 40.98 5.34
420 421 1.654954 ATCGAAGACCTACTGCGCGT 61.655 55.000 8.43 6.51 46.41 6.01
421 422 0.525668 AATCGAAGACCTACTGCGCG 60.526 55.000 0.00 0.00 46.41 6.86
422 423 1.201343 GAATCGAAGACCTACTGCGC 58.799 55.000 0.00 0.00 46.41 6.09
424 425 3.851098 ACTTGAATCGAAGACCTACTGC 58.149 45.455 0.00 0.00 42.51 4.40
425 426 4.158764 AGGACTTGAATCGAAGACCTACTG 59.841 45.833 11.91 0.00 43.54 2.74
426 427 4.345854 AGGACTTGAATCGAAGACCTACT 58.654 43.478 11.91 0.00 43.54 2.57
427 428 4.674475 GAGGACTTGAATCGAAGACCTAC 58.326 47.826 12.93 6.86 44.79 3.18
428 429 3.377485 CGAGGACTTGAATCGAAGACCTA 59.623 47.826 12.93 0.00 44.79 3.08
429 430 2.164624 CGAGGACTTGAATCGAAGACCT 59.835 50.000 12.86 12.86 46.60 3.85
430 431 2.531206 CGAGGACTTGAATCGAAGACC 58.469 52.381 0.00 0.00 42.51 3.85
431 432 1.921230 GCGAGGACTTGAATCGAAGAC 59.079 52.381 0.00 0.00 42.51 3.01
432 433 1.544246 TGCGAGGACTTGAATCGAAGA 59.456 47.619 0.00 0.00 45.75 2.87
433 434 1.656095 GTGCGAGGACTTGAATCGAAG 59.344 52.381 0.00 0.00 38.72 3.79
434 435 1.000394 TGTGCGAGGACTTGAATCGAA 60.000 47.619 0.00 0.00 38.72 3.71
435 436 0.601057 TGTGCGAGGACTTGAATCGA 59.399 50.000 0.00 0.00 38.72 3.59
436 437 1.428448 TTGTGCGAGGACTTGAATCG 58.572 50.000 0.00 0.00 39.40 3.34
437 438 2.808543 AGTTTGTGCGAGGACTTGAATC 59.191 45.455 0.00 0.00 0.00 2.52
438 439 2.851195 AGTTTGTGCGAGGACTTGAAT 58.149 42.857 0.00 0.00 0.00 2.57
439 440 2.325583 AGTTTGTGCGAGGACTTGAA 57.674 45.000 0.00 0.00 0.00 2.69
440 441 2.325583 AAGTTTGTGCGAGGACTTGA 57.674 45.000 0.00 0.00 31.59 3.02
441 442 3.560068 ACTAAAGTTTGTGCGAGGACTTG 59.440 43.478 0.00 0.00 33.02 3.16
442 443 3.805207 ACTAAAGTTTGTGCGAGGACTT 58.195 40.909 0.00 0.00 34.03 3.01
443 444 3.470645 ACTAAAGTTTGTGCGAGGACT 57.529 42.857 0.00 0.00 0.00 3.85
444 445 4.547406 AAACTAAAGTTTGTGCGAGGAC 57.453 40.909 7.29 0.00 45.55 3.85
445 446 5.336744 CAAAAACTAAAGTTTGTGCGAGGA 58.663 37.500 11.75 0.00 46.47 3.71
446 447 4.502645 CCAAAAACTAAAGTTTGTGCGAGG 59.497 41.667 16.96 3.65 46.64 4.63
447 448 4.502645 CCCAAAAACTAAAGTTTGTGCGAG 59.497 41.667 16.96 6.81 46.64 5.03
448 449 4.158025 TCCCAAAAACTAAAGTTTGTGCGA 59.842 37.500 16.96 12.66 46.64 5.10
449 450 4.425520 TCCCAAAAACTAAAGTTTGTGCG 58.574 39.130 16.96 10.87 46.64 5.34
450 451 6.918892 ATTCCCAAAAACTAAAGTTTGTGC 57.081 33.333 16.96 0.00 46.64 4.57
455 456 8.994500 TCCCTAAAATTCCCAAAAACTAAAGTT 58.006 29.630 0.00 0.00 40.50 2.66
456 457 8.555896 TCCCTAAAATTCCCAAAAACTAAAGT 57.444 30.769 0.00 0.00 0.00 2.66
459 460 9.785982 CAATTCCCTAAAATTCCCAAAAACTAA 57.214 29.630 0.00 0.00 0.00 2.24
460 461 8.939932 ACAATTCCCTAAAATTCCCAAAAACTA 58.060 29.630 0.00 0.00 0.00 2.24
461 462 7.811282 ACAATTCCCTAAAATTCCCAAAAACT 58.189 30.769 0.00 0.00 0.00 2.66
462 463 8.349245 CAACAATTCCCTAAAATTCCCAAAAAC 58.651 33.333 0.00 0.00 0.00 2.43
463 464 8.055790 ACAACAATTCCCTAAAATTCCCAAAAA 58.944 29.630 0.00 0.00 0.00 1.94
464 465 7.578203 ACAACAATTCCCTAAAATTCCCAAAA 58.422 30.769 0.00 0.00 0.00 2.44
465 466 7.142995 ACAACAATTCCCTAAAATTCCCAAA 57.857 32.000 0.00 0.00 0.00 3.28
466 467 6.755542 ACAACAATTCCCTAAAATTCCCAA 57.244 33.333 0.00 0.00 0.00 4.12
467 468 6.755542 AACAACAATTCCCTAAAATTCCCA 57.244 33.333 0.00 0.00 0.00 4.37
468 469 6.367695 CGAAACAACAATTCCCTAAAATTCCC 59.632 38.462 0.00 0.00 0.00 3.97
469 470 6.367695 CCGAAACAACAATTCCCTAAAATTCC 59.632 38.462 0.00 0.00 0.00 3.01
470 471 6.926826 ACCGAAACAACAATTCCCTAAAATTC 59.073 34.615 0.00 0.00 0.00 2.17
471 472 6.822442 ACCGAAACAACAATTCCCTAAAATT 58.178 32.000 0.00 0.00 0.00 1.82
472 473 6.413783 ACCGAAACAACAATTCCCTAAAAT 57.586 33.333 0.00 0.00 0.00 1.82
473 474 5.855740 ACCGAAACAACAATTCCCTAAAA 57.144 34.783 0.00 0.00 0.00 1.52
474 475 5.855740 AACCGAAACAACAATTCCCTAAA 57.144 34.783 0.00 0.00 0.00 1.85
475 476 5.855740 AAACCGAAACAACAATTCCCTAA 57.144 34.783 0.00 0.00 0.00 2.69
476 477 5.593010 CAAAACCGAAACAACAATTCCCTA 58.407 37.500 0.00 0.00 0.00 3.53
477 478 4.438148 CAAAACCGAAACAACAATTCCCT 58.562 39.130 0.00 0.00 0.00 4.20
478 479 3.001838 GCAAAACCGAAACAACAATTCCC 59.998 43.478 0.00 0.00 0.00 3.97
479 480 3.001838 GGCAAAACCGAAACAACAATTCC 59.998 43.478 0.00 0.00 0.00 3.01
480 481 4.190304 GGCAAAACCGAAACAACAATTC 57.810 40.909 0.00 0.00 0.00 2.17
493 494 1.065109 AAACGACAGCGGCAAAACC 59.935 52.632 1.45 0.00 43.17 3.27
494 495 0.524604 ACAAACGACAGCGGCAAAAC 60.525 50.000 1.45 0.00 43.17 2.43
495 496 0.171455 AACAAACGACAGCGGCAAAA 59.829 45.000 1.45 0.00 43.17 2.44
496 497 0.171455 AAACAAACGACAGCGGCAAA 59.829 45.000 1.45 0.00 43.17 3.68
497 498 0.248296 GAAACAAACGACAGCGGCAA 60.248 50.000 1.45 0.00 43.17 4.52
498 499 1.092921 AGAAACAAACGACAGCGGCA 61.093 50.000 1.45 0.00 43.17 5.69
499 500 0.028902 AAGAAACAAACGACAGCGGC 59.971 50.000 0.00 0.00 43.17 6.53
500 501 2.468532 AAAGAAACAAACGACAGCGG 57.531 45.000 0.00 0.00 43.17 5.52
501 502 7.582679 CCATATATAAAGAAACAAACGACAGCG 59.417 37.037 0.00 0.00 44.79 5.18
502 503 7.376072 GCCATATATAAAGAAACAAACGACAGC 59.624 37.037 0.00 0.00 0.00 4.40
503 504 7.582679 CGCCATATATAAAGAAACAAACGACAG 59.417 37.037 0.00 0.00 0.00 3.51
504 505 7.403421 CGCCATATATAAAGAAACAAACGACA 58.597 34.615 0.00 0.00 0.00 4.35
505 506 6.356190 GCGCCATATATAAAGAAACAAACGAC 59.644 38.462 0.00 0.00 0.00 4.34
506 507 6.259167 AGCGCCATATATAAAGAAACAAACGA 59.741 34.615 2.29 0.00 0.00 3.85
507 508 6.356977 CAGCGCCATATATAAAGAAACAAACG 59.643 38.462 2.29 0.00 0.00 3.60
508 509 6.142320 GCAGCGCCATATATAAAGAAACAAAC 59.858 38.462 2.29 0.00 0.00 2.93
509 510 6.183360 TGCAGCGCCATATATAAAGAAACAAA 60.183 34.615 2.29 0.00 0.00 2.83
510 511 5.298026 TGCAGCGCCATATATAAAGAAACAA 59.702 36.000 2.29 0.00 0.00 2.83
511 512 4.819088 TGCAGCGCCATATATAAAGAAACA 59.181 37.500 2.29 0.00 0.00 2.83
512 513 5.356882 TGCAGCGCCATATATAAAGAAAC 57.643 39.130 2.29 0.00 0.00 2.78
513 514 6.384258 TTTGCAGCGCCATATATAAAGAAA 57.616 33.333 2.29 0.00 0.00 2.52
514 515 6.430925 AGATTTGCAGCGCCATATATAAAGAA 59.569 34.615 2.29 0.00 0.00 2.52
515 516 5.939883 AGATTTGCAGCGCCATATATAAAGA 59.060 36.000 2.29 0.00 0.00 2.52
516 517 6.187125 AGATTTGCAGCGCCATATATAAAG 57.813 37.500 2.29 0.00 0.00 1.85
517 518 6.183360 GCTAGATTTGCAGCGCCATATATAAA 60.183 38.462 2.29 0.00 0.00 1.40
518 519 5.294306 GCTAGATTTGCAGCGCCATATATAA 59.706 40.000 2.29 0.00 0.00 0.98
519 520 4.811024 GCTAGATTTGCAGCGCCATATATA 59.189 41.667 2.29 0.00 0.00 0.86
520 521 3.624861 GCTAGATTTGCAGCGCCATATAT 59.375 43.478 2.29 0.00 0.00 0.86
521 522 3.002791 GCTAGATTTGCAGCGCCATATA 58.997 45.455 2.29 0.00 0.00 0.86
522 523 1.808945 GCTAGATTTGCAGCGCCATAT 59.191 47.619 2.29 0.00 0.00 1.78
523 524 1.229428 GCTAGATTTGCAGCGCCATA 58.771 50.000 2.29 0.00 0.00 2.74
524 525 0.749091 TGCTAGATTTGCAGCGCCAT 60.749 50.000 2.29 0.00 40.79 4.40
525 526 0.749091 ATGCTAGATTTGCAGCGCCA 60.749 50.000 2.29 0.00 44.04 5.69
526 527 0.317603 CATGCTAGATTTGCAGCGCC 60.318 55.000 2.29 0.00 44.04 6.53
527 528 0.659427 TCATGCTAGATTTGCAGCGC 59.341 50.000 0.00 0.00 44.04 5.92
528 529 1.938577 ACTCATGCTAGATTTGCAGCG 59.061 47.619 0.00 0.00 44.04 5.18
529 530 2.681848 ACACTCATGCTAGATTTGCAGC 59.318 45.455 0.00 0.00 44.04 5.25
530 531 4.959596 AACACTCATGCTAGATTTGCAG 57.040 40.909 0.00 0.00 44.04 4.41
531 532 4.520111 ACAAACACTCATGCTAGATTTGCA 59.480 37.500 0.00 0.00 44.95 4.08
532 533 5.051891 ACAAACACTCATGCTAGATTTGC 57.948 39.130 0.00 0.00 33.36 3.68
533 534 7.246311 CCTAACAAACACTCATGCTAGATTTG 58.754 38.462 0.00 11.09 34.81 2.32
534 535 6.127897 GCCTAACAAACACTCATGCTAGATTT 60.128 38.462 0.00 0.00 0.00 2.17
535 536 5.355350 GCCTAACAAACACTCATGCTAGATT 59.645 40.000 0.00 0.00 0.00 2.40
536 537 4.878397 GCCTAACAAACACTCATGCTAGAT 59.122 41.667 0.00 0.00 0.00 1.98
537 538 4.253685 GCCTAACAAACACTCATGCTAGA 58.746 43.478 0.00 0.00 0.00 2.43
538 539 3.062639 CGCCTAACAAACACTCATGCTAG 59.937 47.826 0.00 0.00 0.00 3.42
539 540 3.000041 CGCCTAACAAACACTCATGCTA 59.000 45.455 0.00 0.00 0.00 3.49
540 541 1.806542 CGCCTAACAAACACTCATGCT 59.193 47.619 0.00 0.00 0.00 3.79
541 542 1.729149 GCGCCTAACAAACACTCATGC 60.729 52.381 0.00 0.00 0.00 4.06
542 543 1.535028 TGCGCCTAACAAACACTCATG 59.465 47.619 4.18 0.00 0.00 3.07
543 544 1.890876 TGCGCCTAACAAACACTCAT 58.109 45.000 4.18 0.00 0.00 2.90
544 545 1.332375 GTTGCGCCTAACAAACACTCA 59.668 47.619 4.18 0.00 0.00 3.41
545 546 1.659211 CGTTGCGCCTAACAAACACTC 60.659 52.381 4.18 0.00 0.00 3.51
546 547 0.306533 CGTTGCGCCTAACAAACACT 59.693 50.000 4.18 0.00 0.00 3.55
547 548 0.659123 CCGTTGCGCCTAACAAACAC 60.659 55.000 4.18 0.00 0.00 3.32
548 549 1.649815 CCGTTGCGCCTAACAAACA 59.350 52.632 4.18 0.00 0.00 2.83
549 550 1.728074 GCCGTTGCGCCTAACAAAC 60.728 57.895 4.18 0.00 0.00 2.93
550 551 0.603172 TAGCCGTTGCGCCTAACAAA 60.603 50.000 4.18 0.00 44.33 2.83
551 552 1.004799 TAGCCGTTGCGCCTAACAA 60.005 52.632 4.18 0.00 44.33 2.83
552 553 1.447140 CTAGCCGTTGCGCCTAACA 60.447 57.895 4.18 0.00 44.33 2.41
553 554 2.810012 GCTAGCCGTTGCGCCTAAC 61.810 63.158 4.18 2.09 44.33 2.34
554 555 2.510691 GCTAGCCGTTGCGCCTAA 60.511 61.111 4.18 0.00 44.33 2.69
555 556 3.426117 GAGCTAGCCGTTGCGCCTA 62.426 63.158 12.13 0.00 44.33 3.93
556 557 4.821589 GAGCTAGCCGTTGCGCCT 62.822 66.667 12.13 0.00 44.33 5.52
558 559 3.558411 CTGAGCTAGCCGTTGCGC 61.558 66.667 12.13 0.00 44.33 6.09
567 568 3.693085 ACAAAATCCATGTGCTGAGCTAG 59.307 43.478 5.83 0.00 0.00 3.42
568 569 3.689347 ACAAAATCCATGTGCTGAGCTA 58.311 40.909 5.83 0.00 0.00 3.32
569 570 2.522185 ACAAAATCCATGTGCTGAGCT 58.478 42.857 5.83 0.00 0.00 4.09
570 571 3.308438 AACAAAATCCATGTGCTGAGC 57.692 42.857 0.00 0.00 0.00 4.26
571 572 5.559417 GCAAAAACAAAATCCATGTGCTGAG 60.559 40.000 0.00 0.00 0.00 3.35
572 573 4.272991 GCAAAAACAAAATCCATGTGCTGA 59.727 37.500 0.00 0.00 0.00 4.26
573 574 4.035324 TGCAAAAACAAAATCCATGTGCTG 59.965 37.500 0.00 0.00 0.00 4.41
574 575 4.197750 TGCAAAAACAAAATCCATGTGCT 58.802 34.783 0.00 0.00 0.00 4.40
575 576 4.548991 TGCAAAAACAAAATCCATGTGC 57.451 36.364 0.00 0.00 0.00 4.57
576 577 5.453648 CCATGCAAAAACAAAATCCATGTG 58.546 37.500 0.00 0.00 0.00 3.21
577 578 4.023021 GCCATGCAAAAACAAAATCCATGT 60.023 37.500 0.00 0.00 0.00 3.21
578 579 4.477780 GCCATGCAAAAACAAAATCCATG 58.522 39.130 0.00 0.00 0.00 3.66
579 580 3.188873 CGCCATGCAAAAACAAAATCCAT 59.811 39.130 0.00 0.00 0.00 3.41
580 581 2.547211 CGCCATGCAAAAACAAAATCCA 59.453 40.909 0.00 0.00 0.00 3.41
581 582 2.665245 GCGCCATGCAAAAACAAAATCC 60.665 45.455 0.00 0.00 45.45 3.01
582 583 2.573282 GCGCCATGCAAAAACAAAATC 58.427 42.857 0.00 0.00 45.45 2.17
583 584 2.684754 GCGCCATGCAAAAACAAAAT 57.315 40.000 0.00 0.00 45.45 1.82
594 595 4.024143 TCACGTGTTGCGCCATGC 62.024 61.111 16.51 0.00 46.11 4.06
595 596 2.116736 AAGTCACGTGTTGCGCCATG 62.117 55.000 16.51 4.41 46.11 3.66
596 597 1.891919 AAGTCACGTGTTGCGCCAT 60.892 52.632 16.51 0.00 46.11 4.40
597 598 2.512745 AAGTCACGTGTTGCGCCA 60.513 55.556 16.51 0.00 46.11 5.69
598 599 2.052237 CAAGTCACGTGTTGCGCC 60.052 61.111 16.51 0.00 46.11 6.53
599 600 2.722188 GCAAGTCACGTGTTGCGC 60.722 61.111 22.92 15.09 46.11 6.09
602 603 2.032894 CACCTTAGCAAGTCACGTGTTG 60.033 50.000 16.51 14.52 0.00 3.33
603 604 2.210116 CACCTTAGCAAGTCACGTGTT 58.790 47.619 16.51 0.00 0.00 3.32
604 605 1.540363 CCACCTTAGCAAGTCACGTGT 60.540 52.381 16.51 0.00 0.00 4.49
605 606 1.148310 CCACCTTAGCAAGTCACGTG 58.852 55.000 9.94 9.94 0.00 4.49
606 607 0.034896 CCCACCTTAGCAAGTCACGT 59.965 55.000 0.00 0.00 0.00 4.49
607 608 0.673644 CCCCACCTTAGCAAGTCACG 60.674 60.000 0.00 0.00 0.00 4.35
608 609 0.400594 ACCCCACCTTAGCAAGTCAC 59.599 55.000 0.00 0.00 0.00 3.67
609 610 0.690762 GACCCCACCTTAGCAAGTCA 59.309 55.000 0.00 0.00 0.00 3.41
610 611 0.391263 CGACCCCACCTTAGCAAGTC 60.391 60.000 0.00 0.00 0.00 3.01
611 612 1.125711 ACGACCCCACCTTAGCAAGT 61.126 55.000 0.00 0.00 0.00 3.16
612 613 0.673644 CACGACCCCACCTTAGCAAG 60.674 60.000 0.00 0.00 0.00 4.01
613 614 1.373435 CACGACCCCACCTTAGCAA 59.627 57.895 0.00 0.00 0.00 3.91
614 615 2.589157 CCACGACCCCACCTTAGCA 61.589 63.158 0.00 0.00 0.00 3.49
615 616 2.267961 CCACGACCCCACCTTAGC 59.732 66.667 0.00 0.00 0.00 3.09
616 617 1.611261 TCCCACGACCCCACCTTAG 60.611 63.158 0.00 0.00 0.00 2.18
617 618 1.611261 CTCCCACGACCCCACCTTA 60.611 63.158 0.00 0.00 0.00 2.69
618 619 2.928396 CTCCCACGACCCCACCTT 60.928 66.667 0.00 0.00 0.00 3.50
621 622 2.764637 ATTTGCTCCCACGACCCCAC 62.765 60.000 0.00 0.00 0.00 4.61
622 623 2.478335 GATTTGCTCCCACGACCCCA 62.478 60.000 0.00 0.00 0.00 4.96
623 624 1.749258 GATTTGCTCCCACGACCCC 60.749 63.158 0.00 0.00 0.00 4.95
624 625 1.002624 TGATTTGCTCCCACGACCC 60.003 57.895 0.00 0.00 0.00 4.46
625 626 0.605319 TGTGATTTGCTCCCACGACC 60.605 55.000 0.00 0.00 33.78 4.79
645 646 0.179108 AAAGATAGGACCGTGCTCGC 60.179 55.000 1.89 0.00 35.54 5.03
758 773 0.539901 ACCTCCTATATGCCGCTCGT 60.540 55.000 0.00 0.00 0.00 4.18
781 829 5.349817 AGTCAGTTACTTGCATCTCATTTCG 59.650 40.000 0.00 0.00 33.35 3.46
815 863 2.076863 GATCCCACACAGTTTTCTCGG 58.923 52.381 0.00 0.00 0.00 4.63
823 871 2.660064 GGCCGAGATCCCACACAGT 61.660 63.158 0.00 0.00 0.00 3.55
832 880 0.672401 TGTTTCGTTGGGCCGAGATC 60.672 55.000 0.00 0.00 38.23 2.75
839 887 0.318699 GCTTCCTTGTTTCGTTGGGC 60.319 55.000 0.00 0.00 0.00 5.36
846 894 6.509418 TTATACACATGGCTTCCTTGTTTC 57.491 37.500 0.00 0.00 39.41 2.78
858 906 4.401022 ACTGATGGCCATTATACACATGG 58.599 43.478 21.84 3.57 43.81 3.66
859 907 4.456911 GGACTGATGGCCATTATACACATG 59.543 45.833 21.84 4.35 0.00 3.21
860 908 4.104579 TGGACTGATGGCCATTATACACAT 59.895 41.667 21.84 1.82 0.00 3.21
861 909 3.457749 TGGACTGATGGCCATTATACACA 59.542 43.478 21.84 11.06 0.00 3.72
862 910 4.067896 CTGGACTGATGGCCATTATACAC 58.932 47.826 21.84 6.27 32.89 2.90
863 911 3.973305 TCTGGACTGATGGCCATTATACA 59.027 43.478 21.84 14.05 32.89 2.29
864 912 4.040952 ACTCTGGACTGATGGCCATTATAC 59.959 45.833 21.84 12.07 32.89 1.47
865 913 4.234550 ACTCTGGACTGATGGCCATTATA 58.765 43.478 21.84 8.85 32.89 0.98
866 914 3.051581 ACTCTGGACTGATGGCCATTAT 58.948 45.455 21.84 8.46 32.89 1.28
867 915 2.435805 GACTCTGGACTGATGGCCATTA 59.564 50.000 21.84 15.72 32.89 1.90
868 916 1.211457 GACTCTGGACTGATGGCCATT 59.789 52.381 21.84 3.27 32.89 3.16
869 917 0.835941 GACTCTGGACTGATGGCCAT 59.164 55.000 20.96 20.96 32.89 4.40
870 918 0.545071 TGACTCTGGACTGATGGCCA 60.545 55.000 8.56 8.56 0.00 5.36
871 919 0.835941 ATGACTCTGGACTGATGGCC 59.164 55.000 0.00 0.00 0.00 5.36
872 920 1.202627 GGATGACTCTGGACTGATGGC 60.203 57.143 0.00 0.00 0.00 4.40
873 921 1.068281 CGGATGACTCTGGACTGATGG 59.932 57.143 0.00 0.00 0.00 3.51
874 922 2.505628 CGGATGACTCTGGACTGATG 57.494 55.000 0.00 0.00 0.00 3.07
890 938 1.984570 CAAGGAGAGAGTGGCCGGA 60.985 63.158 5.05 0.00 0.00 5.14
891 939 2.581354 CAAGGAGAGAGTGGCCGG 59.419 66.667 0.00 0.00 0.00 6.13
892 940 2.125350 GCAAGGAGAGAGTGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
918 966 8.257306 TGGTCTGCTATTTGTTTTTCTTTTTCT 58.743 29.630 0.00 0.00 0.00 2.52
920 968 8.040727 AGTGGTCTGCTATTTGTTTTTCTTTTT 58.959 29.630 0.00 0.00 0.00 1.94
931 979 2.932614 CGGAAGAGTGGTCTGCTATTTG 59.067 50.000 0.00 0.00 31.37 2.32
935 994 1.890894 GCGGAAGAGTGGTCTGCTA 59.109 57.895 0.00 0.00 42.94 3.49
949 1008 4.373116 GGTGGCGAGTGAAGCGGA 62.373 66.667 0.00 0.00 35.00 5.54
953 1012 2.690653 TTTGGGGGTGGCGAGTGAAG 62.691 60.000 0.00 0.00 0.00 3.02
954 1013 2.758207 TTTGGGGGTGGCGAGTGAA 61.758 57.895 0.00 0.00 0.00 3.18
1103 1176 2.042831 GTGCAGATGTGGGTGAGCC 61.043 63.158 0.00 0.00 0.00 4.70
1108 1181 1.221840 GATCGGTGCAGATGTGGGT 59.778 57.895 0.00 0.00 0.00 4.51
1453 1535 0.176680 GCTTCGAGGATGCTGGAGAA 59.823 55.000 0.00 0.00 31.35 2.87
1483 1565 4.796495 GTGGACGGTGGGGATGGC 62.796 72.222 0.00 0.00 0.00 4.40
2046 7167 1.681538 TGGTGTCTCGGATCTCTAGC 58.318 55.000 0.00 0.00 0.00 3.42
2070 7198 4.100035 CAGACAGGAGAAGCATGTACCATA 59.900 45.833 0.00 0.00 42.39 2.74
2262 7410 0.039256 CTTGGCATCCGTGTGGTTTG 60.039 55.000 0.00 0.00 36.30 2.93
2363 7512 7.328737 ACTAGTGGAAACCAGTATGAATGTAC 58.671 38.462 0.00 0.00 38.56 2.90
2375 7524 5.968676 ATAAGGCATACTAGTGGAAACCA 57.031 39.130 5.39 0.00 0.00 3.67
2389 7538 8.190784 GCTACAAACATTCTACAAATAAGGCAT 58.809 33.333 0.00 0.00 0.00 4.40
2392 7541 7.698130 GCTGCTACAAACATTCTACAAATAAGG 59.302 37.037 0.00 0.00 0.00 2.69
2441 7592 9.696917 ATTAATCAAACAGAAGATGAAAACACC 57.303 29.630 0.00 0.00 0.00 4.16
2458 7609 8.252417 ACAGCACATTATCTGCAATTAATCAAA 58.748 29.630 0.00 0.00 37.08 2.69
2511 7665 8.630917 ACGCTATATAACAAGAGCTAAAGAAGA 58.369 33.333 0.00 0.00 32.60 2.87
2520 7674 5.854338 GTGAGAGACGCTATATAACAAGAGC 59.146 44.000 0.00 0.00 0.00 4.09
2528 7682 4.715713 ACCACAGTGAGAGACGCTATATA 58.284 43.478 0.62 0.00 37.60 0.86
2529 7683 3.556999 ACCACAGTGAGAGACGCTATAT 58.443 45.455 0.62 0.00 37.60 0.86
2545 7699 9.169592 CAGCATGAATATTGATATATGACCACA 57.830 33.333 0.00 0.00 39.69 4.17
2590 7756 1.166531 AGTCCGAAACAAGCACTGCC 61.167 55.000 0.00 0.00 0.00 4.85
2599 7765 7.789273 TGTGTAAATTTCTTAGTCCGAAACA 57.211 32.000 0.00 0.00 33.64 2.83
2702 7871 8.753497 ATTAATTAACCATTGAGAACTCCCTC 57.247 34.615 0.00 0.00 0.00 4.30
2708 7877 9.736023 CCTTGCTATTAATTAACCATTGAGAAC 57.264 33.333 0.00 0.00 0.00 3.01
2796 8057 9.058174 TGTTTACCAAATATATACAATGGACCG 57.942 33.333 14.20 0.00 35.16 4.79
2803 8064 9.232473 TGCACAGTGTTTACCAAATATATACAA 57.768 29.630 1.61 0.00 0.00 2.41
2806 8077 8.050325 AGGTGCACAGTGTTTACCAAATATATA 58.950 33.333 20.43 0.00 33.88 0.86
2820 8091 1.037030 CCCAAACAGGTGCACAGTGT 61.037 55.000 20.43 18.03 34.66 3.55
2821 8092 0.751277 TCCCAAACAGGTGCACAGTG 60.751 55.000 20.43 17.34 34.66 3.66
2840 8111 4.188937 ACATATTCTGCATTGATGGGGT 57.811 40.909 0.00 0.00 0.00 4.95
2851 8122 6.587226 TGCTGAACAAATCAAACATATTCTGC 59.413 34.615 0.00 0.00 37.67 4.26
2858 8147 4.508861 GCTGTTGCTGAACAAATCAAACAT 59.491 37.500 0.00 0.00 41.62 2.71
2869 8160 2.608752 CCAATCAAGGCTGTTGCTGAAC 60.609 50.000 0.00 0.00 39.59 3.18
2890 8181 3.003897 TCGCAACTAAAACATGGTCCAAC 59.996 43.478 0.00 0.00 0.00 3.77
2968 8281 3.884895 CACTATGCAGTTCCCCATGTTA 58.115 45.455 0.00 0.00 30.46 2.41
2996 8313 5.643777 CGTGAAAGACCAGAAATTGATACCT 59.356 40.000 0.00 0.00 0.00 3.08
3011 8328 1.145803 GTAGCCCACACGTGAAAGAC 58.854 55.000 25.01 8.32 0.00 3.01
3063 8403 8.929827 TGCAAATCAACGATCAATATTTTCAT 57.070 26.923 0.00 0.00 0.00 2.57
3100 8440 8.058667 TGCTTGACATTTATGATCATTGACTT 57.941 30.769 14.65 0.00 0.00 3.01
3164 8600 3.637769 TGCTTTCCAAAAGTTAGTGGGT 58.362 40.909 5.83 0.00 35.46 4.51
3264 8740 8.946085 GTAATATCACACAGATCACCAGAAAAA 58.054 33.333 0.00 0.00 38.19 1.94
3409 8888 6.622549 ACTCTAGTCACTGTTTAGTATGTGC 58.377 40.000 0.00 0.00 34.74 4.57
3478 8957 8.149631 ACCCCAGAATTCATAACAAATTTCAT 57.850 30.769 8.44 0.00 0.00 2.57
3482 8961 6.654582 GCAAACCCCAGAATTCATAACAAATT 59.345 34.615 8.44 0.00 0.00 1.82
3488 8967 4.155709 TGTGCAAACCCCAGAATTCATAA 58.844 39.130 8.44 0.00 0.00 1.90
3495 8974 0.392336 GCAATGTGCAAACCCCAGAA 59.608 50.000 0.00 0.00 44.26 3.02
3496 8975 2.048601 GCAATGTGCAAACCCCAGA 58.951 52.632 0.00 0.00 44.26 3.86
3497 8976 4.679412 GCAATGTGCAAACCCCAG 57.321 55.556 0.00 0.00 44.26 4.45
3647 9219 1.091771 CGGTGGCCTCATGATCACAC 61.092 60.000 18.99 16.02 32.29 3.82
3746 9320 6.614657 TGTGGGTTCTGATATATGAGAGAGA 58.385 40.000 2.04 0.00 0.00 3.10
3747 9321 6.907853 TGTGGGTTCTGATATATGAGAGAG 57.092 41.667 2.04 0.00 0.00 3.20
4085 9974 3.326747 CGTTCCGGAAGAAGAACTTGAT 58.673 45.455 19.50 0.00 39.13 2.57
4155 10044 2.224137 GCCTCATCCATCGAGAATGTCA 60.224 50.000 0.00 0.00 33.13 3.58
4190 10079 4.098501 GGCCATATTGTTAGAAGCTTGCTT 59.901 41.667 2.10 7.65 0.00 3.91
4193 10082 4.641989 ACTGGCCATATTGTTAGAAGCTTG 59.358 41.667 5.51 0.00 0.00 4.01
4207 10096 1.399744 CGCAGGACCTACTGGCCATA 61.400 60.000 5.51 0.00 38.90 2.74
4243 10132 0.689623 CTCCTTCAGGACCTGTGCTT 59.310 55.000 21.06 0.00 39.78 3.91
4350 10239 4.330074 CAGGTACCAAAAGAAGCAGATACG 59.670 45.833 15.94 0.00 0.00 3.06
4398 10311 3.636404 GGACGACGAATTTAACAGAGC 57.364 47.619 0.00 0.00 0.00 4.09
4414 10329 3.865164 TGATTCTCATCAAACATCGGACG 59.135 43.478 0.00 0.00 36.41 4.79
4484 10424 7.439056 CACAATCAAAAAGTTGTAAGGAGCATT 59.561 33.333 0.00 0.00 36.48 3.56
4494 10434 3.197265 GCTGCCACAATCAAAAAGTTGT 58.803 40.909 0.00 0.00 39.00 3.32
4519 10459 9.559958 GACATGATCCACAAAATACAGTTAAAG 57.440 33.333 0.00 0.00 0.00 1.85
4593 10533 7.956420 ATATAATCAAAACAATGCATGCCTG 57.044 32.000 16.68 14.95 0.00 4.85
4623 10563 0.954452 GGTGCCTCCACAAGTTCAAG 59.046 55.000 0.00 0.00 43.88 3.02
4639 10579 3.885724 AAGGCCCGAAATAAAATGGTG 57.114 42.857 0.00 0.00 0.00 4.17
4657 10597 3.370366 GCTCACTCAGACATGCAAGTAAG 59.630 47.826 0.00 0.00 0.00 2.34
4662 10602 2.148768 CAAGCTCACTCAGACATGCAA 58.851 47.619 0.00 0.00 0.00 4.08
4668 10608 8.430801 AATAATATTGACAAGCTCACTCAGAC 57.569 34.615 0.00 0.00 0.00 3.51
4803 10744 8.696374 TCATATGTACCTAGAAGAAGTCAAAGG 58.304 37.037 1.90 0.00 37.57 3.11
4855 10796 8.906867 AGCAGAACATAATAAATAAGCACATGT 58.093 29.630 0.00 0.00 0.00 3.21
4864 10805 9.687210 CGTGTACCTAGCAGAACATAATAAATA 57.313 33.333 0.00 0.00 0.00 1.40
4869 10810 5.126545 TCACGTGTACCTAGCAGAACATAAT 59.873 40.000 16.51 0.00 0.00 1.28
4875 10826 2.786777 TCTCACGTGTACCTAGCAGAA 58.213 47.619 16.51 0.00 0.00 3.02
4899 10850 3.070015 ACTTTTGAGGCCTGAATTTGTGG 59.930 43.478 12.00 0.00 0.00 4.17
4977 10928 4.525912 AAAGAGCTTAGGCACCATTTTG 57.474 40.909 0.00 0.00 41.70 2.44
4989 10940 2.371841 TCACCAGGAGCAAAAGAGCTTA 59.628 45.455 0.00 0.00 46.75 3.09
4996 10947 2.435372 ACTGTTCACCAGGAGCAAAA 57.565 45.000 0.00 0.00 46.06 2.44
5044 10995 9.119418 TCTCATCTTTCATGTGTAAAAAGTTCA 57.881 29.630 0.00 0.00 0.00 3.18
5045 10996 9.604626 CTCTCATCTTTCATGTGTAAAAAGTTC 57.395 33.333 0.00 0.00 0.00 3.01
5059 11019 7.335422 GCACCTAGAAAATTCTCTCATCTTTCA 59.665 37.037 0.00 0.00 38.70 2.69
5066 11026 4.245660 CACGCACCTAGAAAATTCTCTCA 58.754 43.478 0.00 0.00 38.70 3.27
5086 11046 4.633565 TCCAAACACCTTGAAATTTTGCAC 59.366 37.500 0.00 0.00 37.17 4.57
5137 11097 3.119316 TGTGCAGACCGAATTTTGTTGTT 60.119 39.130 0.00 0.00 0.00 2.83
5138 11098 2.425312 TGTGCAGACCGAATTTTGTTGT 59.575 40.909 0.00 0.00 0.00 3.32
5139 11099 3.044986 CTGTGCAGACCGAATTTTGTTG 58.955 45.455 0.00 0.00 0.00 3.33
5165 11125 7.095271 TGGCTTGTCAAAGAAACTTTCAAAAAG 60.095 33.333 4.34 0.00 35.19 2.27
5188 11148 7.111353 TCGTAGCAAAAATAACAAATTTGGC 57.889 32.000 21.74 12.39 35.21 4.52
5208 11168 3.734463 TGGACATTTTGACAAGCTCGTA 58.266 40.909 0.00 0.00 0.00 3.43
5220 11180 4.457834 TTTCACGGTGTTTGGACATTTT 57.542 36.364 8.17 0.00 38.23 1.82
5236 11196 1.851658 AGGTGCGTGCAAAATTTCAC 58.148 45.000 0.00 0.00 0.00 3.18
5245 11205 1.550524 AGAATCTTCTAGGTGCGTGCA 59.449 47.619 0.00 0.00 35.34 4.57
5266 11226 7.151308 TGAAAATTTTACGCATGGAAGTTGAT 58.849 30.769 2.75 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.