Multiple sequence alignment - TraesCS2D01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G018100 chr2D 100.000 3473 0 0 1 3473 8658798 8662270 0.000000e+00 6414.0
1 TraesCS2D01G018100 chr2D 83.477 1513 226 12 985 2485 9371499 9372999 0.000000e+00 1387.0
2 TraesCS2D01G018100 chr2D 80.638 1849 300 43 673 2497 8686150 8687964 0.000000e+00 1378.0
3 TraesCS2D01G018100 chr2D 82.418 1547 232 18 903 2429 9642887 9644413 0.000000e+00 1314.0
4 TraesCS2D01G018100 chr2D 81.553 1610 260 26 892 2474 9502102 9503701 0.000000e+00 1293.0
5 TraesCS2D01G018100 chr2D 81.801 1544 244 20 961 2485 9277447 9278972 0.000000e+00 1260.0
6 TraesCS2D01G018100 chr2D 91.971 137 11 0 3336 3472 359665572 359665436 3.540000e-45 193.0
7 TraesCS2D01G018100 chr2D 84.173 139 20 2 3336 3473 2564094 2563957 2.170000e-27 134.0
8 TraesCS2D01G018100 chr2A 92.376 2125 137 12 442 2549 7726836 7728952 0.000000e+00 3003.0
9 TraesCS2D01G018100 chr2A 83.722 1542 226 13 956 2485 8627380 8628908 0.000000e+00 1434.0
10 TraesCS2D01G018100 chr2A 81.907 1542 241 17 903 2425 8727223 8728745 0.000000e+00 1267.0
11 TraesCS2D01G018100 chr2A 80.729 1536 239 38 972 2484 8413081 8414582 0.000000e+00 1144.0
12 TraesCS2D01G018100 chr2A 78.604 1519 276 29 998 2497 8736820 8735332 0.000000e+00 959.0
13 TraesCS2D01G018100 chr2A 96.226 265 10 0 24 288 7725879 7726143 5.320000e-118 435.0
14 TraesCS2D01G018100 chr2A 90.583 223 17 2 2551 2769 7728883 7729105 3.390000e-75 292.0
15 TraesCS2D01G018100 chr2A 79.024 410 67 12 2105 2504 86387307 86386907 2.660000e-66 263.0
16 TraesCS2D01G018100 chr2A 83.036 224 24 4 32 243 7522501 7522280 1.270000e-44 191.0
17 TraesCS2D01G018100 chr2A 78.814 236 42 7 2263 2497 7513505 7513277 6.000000e-33 152.0
18 TraesCS2D01G018100 chr2A 93.827 81 5 0 3046 3126 7729467 7729547 4.710000e-24 122.0
19 TraesCS2D01G018100 chr2A 97.222 36 1 0 311 346 7726146 7726181 1.040000e-05 62.1
20 TraesCS2D01G018100 chr2B 82.493 1508 245 9 998 2497 138993293 138991797 0.000000e+00 1304.0
21 TraesCS2D01G018100 chr2B 81.900 1547 236 22 903 2429 11454311 11452789 0.000000e+00 1266.0
22 TraesCS2D01G018100 chr2B 81.409 1533 246 21 998 2510 13058782 13057269 0.000000e+00 1216.0
23 TraesCS2D01G018100 chr2B 79.528 1524 264 29 998 2497 11445440 11446939 0.000000e+00 1042.0
24 TraesCS2D01G018100 chr2B 79.383 1523 271 25 998 2497 12995970 12994468 0.000000e+00 1033.0
25 TraesCS2D01G018100 chr2B 73.810 630 96 46 363 963 11229604 11229015 5.920000e-43 185.0
26 TraesCS2D01G018100 chr2B 95.312 64 3 0 3267 3330 347101058 347100995 6.130000e-18 102.0
27 TraesCS2D01G018100 chr4B 83.486 218 24 7 3268 3473 541452172 541451955 3.540000e-45 193.0
28 TraesCS2D01G018100 chr4B 85.039 127 18 1 3336 3461 526967844 526967970 1.010000e-25 128.0
29 TraesCS2D01G018100 chr4B 95.082 61 3 0 3270 3330 559535870 559535810 2.850000e-16 97.1
30 TraesCS2D01G018100 chr6A 89.855 138 14 0 3336 3473 590047149 590047012 9.910000e-41 178.0
31 TraesCS2D01G018100 chr6A 95.312 64 3 0 3267 3330 590047282 590047219 6.130000e-18 102.0
32 TraesCS2D01G018100 chr6B 88.406 138 15 1 3337 3473 19090313 19090176 7.710000e-37 165.0
33 TraesCS2D01G018100 chr4A 87.770 139 16 1 3336 3473 524294639 524294777 9.980000e-36 161.0
34 TraesCS2D01G018100 chr5D 88.189 127 14 1 3336 3461 547445265 547445139 2.160000e-32 150.0
35 TraesCS2D01G018100 chr5D 83.942 137 21 1 3338 3473 231562976 231562840 2.810000e-26 130.0
36 TraesCS2D01G018100 chr5D 95.312 64 3 0 3267 3330 53685025 53685088 6.130000e-18 102.0
37 TraesCS2D01G018100 chr3B 85.000 140 19 2 3336 3473 644841696 644841557 1.300000e-29 141.0
38 TraesCS2D01G018100 chr6D 95.238 63 3 0 3268 3330 422939594 422939656 2.210000e-17 100.0
39 TraesCS2D01G018100 chr5B 92.754 69 4 1 3264 3331 706465959 706465891 7.930000e-17 99.0
40 TraesCS2D01G018100 chr1B 92.754 69 4 1 3262 3330 30705727 30705794 7.930000e-17 99.0
41 TraesCS2D01G018100 chr3A 92.647 68 4 1 3264 3331 678733359 678733425 2.850000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G018100 chr2D 8658798 8662270 3472 False 6414.00 6414 100.0000 1 3473 1 chr2D.!!$F1 3472
1 TraesCS2D01G018100 chr2D 9371499 9372999 1500 False 1387.00 1387 83.4770 985 2485 1 chr2D.!!$F4 1500
2 TraesCS2D01G018100 chr2D 8686150 8687964 1814 False 1378.00 1378 80.6380 673 2497 1 chr2D.!!$F2 1824
3 TraesCS2D01G018100 chr2D 9642887 9644413 1526 False 1314.00 1314 82.4180 903 2429 1 chr2D.!!$F6 1526
4 TraesCS2D01G018100 chr2D 9502102 9503701 1599 False 1293.00 1293 81.5530 892 2474 1 chr2D.!!$F5 1582
5 TraesCS2D01G018100 chr2D 9277447 9278972 1525 False 1260.00 1260 81.8010 961 2485 1 chr2D.!!$F3 1524
6 TraesCS2D01G018100 chr2A 8627380 8628908 1528 False 1434.00 1434 83.7220 956 2485 1 chr2A.!!$F2 1529
7 TraesCS2D01G018100 chr2A 8727223 8728745 1522 False 1267.00 1267 81.9070 903 2425 1 chr2A.!!$F3 1522
8 TraesCS2D01G018100 chr2A 8413081 8414582 1501 False 1144.00 1144 80.7290 972 2484 1 chr2A.!!$F1 1512
9 TraesCS2D01G018100 chr2A 8735332 8736820 1488 True 959.00 959 78.6040 998 2497 1 chr2A.!!$R3 1499
10 TraesCS2D01G018100 chr2A 7725879 7729547 3668 False 782.82 3003 94.0468 24 3126 5 chr2A.!!$F4 3102
11 TraesCS2D01G018100 chr2B 138991797 138993293 1496 True 1304.00 1304 82.4930 998 2497 1 chr2B.!!$R5 1499
12 TraesCS2D01G018100 chr2B 11452789 11454311 1522 True 1266.00 1266 81.9000 903 2429 1 chr2B.!!$R2 1526
13 TraesCS2D01G018100 chr2B 13057269 13058782 1513 True 1216.00 1216 81.4090 998 2510 1 chr2B.!!$R4 1512
14 TraesCS2D01G018100 chr2B 11445440 11446939 1499 False 1042.00 1042 79.5280 998 2497 1 chr2B.!!$F1 1499
15 TraesCS2D01G018100 chr2B 12994468 12995970 1502 True 1033.00 1033 79.3830 998 2497 1 chr2B.!!$R3 1499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.306533 AACGCGTGATCAACAACCAC 59.693 50.0 14.98 0.00 0.0 4.16 F
564 1124 0.515127 ACGACGATCAAATTTGCGCA 59.485 45.0 5.66 5.66 0.0 6.09 F
1668 2271 0.106769 TGGTTGCTCATGTGTGTGGT 60.107 50.0 0.00 0.00 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1958 1.068055 GCCTTGTCGTCTTTCTCCGTA 60.068 52.381 0.00 0.0 0.00 4.02 R
2175 2789 1.715019 TAAGCAGGGTTGGGTGCACT 61.715 55.000 17.98 0.0 42.47 4.40 R
3434 4252 0.027586 GAAAAATGGTCGGATCGGCG 59.972 55.000 0.00 0.0 29.52 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.947834 GGCAATAGATATCCCCCATTTCG 59.052 47.826 0.00 0.00 0.00 3.46
42 43 4.324254 GGCAATAGATATCCCCCATTTCGA 60.324 45.833 0.00 0.00 0.00 3.71
77 78 2.269023 TGACACCTCTGATTCCCATGT 58.731 47.619 0.00 0.00 0.00 3.21
115 116 7.519649 GCAAGATTTCTCTTCCTGCATATGTAC 60.520 40.741 4.29 0.00 39.78 2.90
201 202 4.352893 TCATCACAATGTCCACTCTAGGA 58.647 43.478 0.00 0.00 34.32 2.94
206 207 7.767250 TCACAATGTCCACTCTAGGATATAG 57.233 40.000 0.00 0.00 38.40 1.31
250 251 7.615365 AGGTTATGAAATGTAAATCCTTCAGCA 59.385 33.333 0.00 0.00 31.70 4.41
288 289 7.429920 CCACAAAATATCCACGGTAATAAAACG 59.570 37.037 0.00 0.00 0.00 3.60
289 290 6.968335 ACAAAATATCCACGGTAATAAAACGC 59.032 34.615 0.00 0.00 0.00 4.84
290 291 4.977741 ATATCCACGGTAATAAAACGCG 57.022 40.909 3.53 3.53 0.00 6.01
291 292 2.077413 TCCACGGTAATAAAACGCGT 57.923 45.000 5.58 5.58 0.00 6.01
292 293 1.725706 TCCACGGTAATAAAACGCGTG 59.274 47.619 14.98 0.00 40.54 5.34
293 294 1.725706 CCACGGTAATAAAACGCGTGA 59.274 47.619 14.98 0.81 41.97 4.35
294 295 2.349275 CCACGGTAATAAAACGCGTGAT 59.651 45.455 14.98 7.51 41.97 3.06
295 296 3.542680 CCACGGTAATAAAACGCGTGATC 60.543 47.826 14.98 0.00 41.97 2.92
296 297 3.061028 CACGGTAATAAAACGCGTGATCA 59.939 43.478 14.98 0.00 41.97 2.92
297 298 3.679025 ACGGTAATAAAACGCGTGATCAA 59.321 39.130 14.98 0.00 0.00 2.57
298 299 4.017271 CGGTAATAAAACGCGTGATCAAC 58.983 43.478 14.98 7.45 0.00 3.18
299 300 4.434461 CGGTAATAAAACGCGTGATCAACA 60.434 41.667 14.98 0.00 0.00 3.33
300 301 5.383958 GGTAATAAAACGCGTGATCAACAA 58.616 37.500 14.98 0.00 0.00 2.83
301 302 5.282076 GGTAATAAAACGCGTGATCAACAAC 59.718 40.000 14.98 4.91 0.00 3.32
302 303 2.113910 AAAACGCGTGATCAACAACC 57.886 45.000 14.98 0.00 0.00 3.77
303 304 1.018148 AAACGCGTGATCAACAACCA 58.982 45.000 14.98 0.00 0.00 3.67
304 305 0.306533 AACGCGTGATCAACAACCAC 59.693 50.000 14.98 0.00 0.00 4.16
305 306 1.206578 CGCGTGATCAACAACCACC 59.793 57.895 0.00 0.00 0.00 4.61
306 307 1.579429 GCGTGATCAACAACCACCC 59.421 57.895 0.00 0.00 0.00 4.61
307 308 1.866237 CGTGATCAACAACCACCCG 59.134 57.895 0.00 0.00 0.00 5.28
308 309 0.601576 CGTGATCAACAACCACCCGA 60.602 55.000 0.00 0.00 0.00 5.14
309 310 1.156736 GTGATCAACAACCACCCGAG 58.843 55.000 0.00 0.00 0.00 4.63
338 339 1.860676 TAGTGGCGTGTTCTGTTCAC 58.139 50.000 0.00 0.00 0.00 3.18
360 682 5.621228 CACGTGTTTGCAAAAGTCTAAGATC 59.379 40.000 14.67 0.00 0.00 2.75
389 711 7.466746 ACTGAACTGGCACAAAATATATGTT 57.533 32.000 0.00 0.00 38.70 2.71
412 734 3.004944 GGACAGAGACTGATCGGGTTATC 59.995 52.174 6.47 0.00 35.18 1.75
419 741 5.903810 AGACTGATCGGGTTATCAAGTTAC 58.096 41.667 6.47 0.00 35.51 2.50
446 768 6.160576 AGGAGCAAATGTACAAACAAACAT 57.839 33.333 0.00 0.00 39.58 2.71
467 1027 4.374689 TGCCTACATGTACCCTTGAAAA 57.625 40.909 0.08 0.00 0.00 2.29
468 1028 4.331968 TGCCTACATGTACCCTTGAAAAG 58.668 43.478 0.08 0.00 45.69 2.27
469 1029 5.280985 ATGCCTACATGTACCCTTGAAAAGA 60.281 40.000 0.08 0.00 40.16 2.52
502 1062 0.935898 CATGGAGCTGCGATTCTCAC 59.064 55.000 0.00 0.00 0.00 3.51
528 1088 4.096984 CCACTGATCAAGATAAACAAGGGC 59.903 45.833 0.00 0.00 0.00 5.19
531 1091 1.083489 TCAAGATAAACAAGGGCGCG 58.917 50.000 0.00 0.00 0.00 6.86
534 1094 2.612212 CAAGATAAACAAGGGCGCGTAT 59.388 45.455 8.43 0.00 0.00 3.06
549 1109 1.779724 GCGTATCATTTCCTCGACGAC 59.220 52.381 0.00 0.00 32.20 4.34
564 1124 0.515127 ACGACGATCAAATTTGCGCA 59.485 45.000 5.66 5.66 0.00 6.09
567 1127 1.906966 GACGATCAAATTTGCGCACTG 59.093 47.619 11.12 5.53 0.00 3.66
585 1145 2.064762 CTGCTTCTCCACTGAAGTTCG 58.935 52.381 0.00 0.00 43.74 3.95
617 1177 2.680841 TCCAAACAACTTTCACGGTCAG 59.319 45.455 0.00 0.00 0.00 3.51
621 1181 4.395959 AACAACTTTCACGGTCAGACTA 57.604 40.909 0.00 0.00 0.00 2.59
624 1184 4.202223 ACAACTTTCACGGTCAGACTATGT 60.202 41.667 0.00 0.00 0.00 2.29
635 1195 4.342378 GGTCAGACTATGTTGGAGCAGATA 59.658 45.833 0.00 0.00 0.00 1.98
741 1314 6.455360 TTTGCAATGGGAAGATAATCAGTC 57.545 37.500 0.00 0.00 0.00 3.51
785 1359 5.432885 AAATACTGGTCGGTCAGTTTTTG 57.567 39.130 18.32 0.00 44.74 2.44
786 1360 2.413310 ACTGGTCGGTCAGTTTTTGT 57.587 45.000 5.88 0.00 44.74 2.83
787 1361 2.718563 ACTGGTCGGTCAGTTTTTGTT 58.281 42.857 5.88 0.00 44.74 2.83
856 1430 9.160496 TGCTTGGGCATTTAAACAAAATTATAG 57.840 29.630 0.00 0.00 44.28 1.31
896 1470 1.152030 ACCCACTCCTCAAGCCTGA 60.152 57.895 0.00 0.00 0.00 3.86
936 1513 4.758674 CCAAGAGTCTCTTCAAGATTTGCA 59.241 41.667 12.37 0.00 33.78 4.08
946 1523 1.203994 CAAGATTTGCAAGAGGCCAGG 59.796 52.381 5.01 0.00 43.89 4.45
1093 1683 3.138798 CCTCCAGCCATGCACAGC 61.139 66.667 1.51 1.51 0.00 4.40
1117 1710 1.116308 GGAGAAGGTGGTAGAGAGGC 58.884 60.000 0.00 0.00 0.00 4.70
1144 1737 1.067749 CTCCTGATGAGAGCTGGCG 59.932 63.158 0.00 0.00 44.42 5.69
1362 1958 2.353208 CCTCAAGCGTTCTAGAACAGCT 60.353 50.000 31.34 31.34 45.54 4.24
1416 2012 2.299867 GTCACATGGTGCCTTGGAAAAT 59.700 45.455 0.00 0.00 32.98 1.82
1636 2237 2.094390 GTGATAGGTGGTGTCGCAGTTA 60.094 50.000 0.00 0.00 0.00 2.24
1668 2271 0.106769 TGGTTGCTCATGTGTGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
1713 2316 6.560253 TTCTCCTCTATTTTGCACTTGAAC 57.440 37.500 0.00 0.00 0.00 3.18
1809 2418 1.469251 GCTTCTGATGTAGGCGACGAA 60.469 52.381 0.00 0.00 0.00 3.85
1814 2423 1.400846 TGATGTAGGCGACGAAGACTC 59.599 52.381 0.00 0.00 0.00 3.36
1939 2548 4.850347 TTCCTTAGCGCTCTATCTTACC 57.150 45.455 16.34 0.00 0.00 2.85
2175 2789 5.687166 AAAGAAACCTGTCCATATACGGA 57.313 39.130 0.00 0.00 0.00 4.69
2199 2813 2.746472 GCACCCAACCCTGCTTATAGAG 60.746 54.545 0.00 0.00 0.00 2.43
2245 2868 1.448540 CTCGCCTCGCATCCACTTT 60.449 57.895 0.00 0.00 0.00 2.66
2257 2880 1.378531 TCCACTTTGCATGATACCGC 58.621 50.000 0.00 0.00 0.00 5.68
2506 3163 7.765819 TCAGACTAGTGTAATGTGATTCCAATG 59.234 37.037 0.00 0.00 0.00 2.82
2519 3176 5.412594 GTGATTCCAATGTTGCTTCAGACTA 59.587 40.000 0.00 0.00 0.00 2.59
2520 3177 5.645067 TGATTCCAATGTTGCTTCAGACTAG 59.355 40.000 0.00 0.00 0.00 2.57
2521 3178 4.623932 TCCAATGTTGCTTCAGACTAGT 57.376 40.909 0.00 0.00 0.00 2.57
2522 3179 4.318332 TCCAATGTTGCTTCAGACTAGTG 58.682 43.478 0.00 0.00 0.00 2.74
2523 3180 4.067896 CCAATGTTGCTTCAGACTAGTGT 58.932 43.478 0.00 0.00 0.00 3.55
2524 3181 5.011635 TCCAATGTTGCTTCAGACTAGTGTA 59.988 40.000 0.00 0.00 0.00 2.90
2525 3182 5.700832 CCAATGTTGCTTCAGACTAGTGTAA 59.299 40.000 0.00 0.00 0.00 2.41
2526 3183 6.372659 CCAATGTTGCTTCAGACTAGTGTAAT 59.627 38.462 0.00 0.00 0.00 1.89
2527 3184 6.974932 ATGTTGCTTCAGACTAGTGTAATG 57.025 37.500 0.00 0.00 0.00 1.90
2528 3185 4.690748 TGTTGCTTCAGACTAGTGTAATGC 59.309 41.667 0.00 0.00 0.00 3.56
2529 3186 3.511699 TGCTTCAGACTAGTGTAATGCG 58.488 45.455 0.00 0.00 0.00 4.73
2530 3187 3.056821 TGCTTCAGACTAGTGTAATGCGT 60.057 43.478 0.00 0.00 0.00 5.24
2531 3188 3.927142 GCTTCAGACTAGTGTAATGCGTT 59.073 43.478 0.00 0.00 0.00 4.84
2532 3189 4.389077 GCTTCAGACTAGTGTAATGCGTTT 59.611 41.667 0.00 0.00 0.00 3.60
2533 3190 5.444745 GCTTCAGACTAGTGTAATGCGTTTC 60.445 44.000 0.00 0.00 0.00 2.78
2534 3191 4.491676 TCAGACTAGTGTAATGCGTTTCC 58.508 43.478 0.00 0.00 0.00 3.13
2535 3192 4.021807 TCAGACTAGTGTAATGCGTTTCCA 60.022 41.667 0.00 0.00 0.00 3.53
2536 3193 4.688879 CAGACTAGTGTAATGCGTTTCCAA 59.311 41.667 0.00 0.00 0.00 3.53
2537 3194 5.351465 CAGACTAGTGTAATGCGTTTCCAAT 59.649 40.000 0.00 0.00 0.00 3.16
2538 3195 5.938125 AGACTAGTGTAATGCGTTTCCAATT 59.062 36.000 0.00 0.00 0.00 2.32
2539 3196 6.430000 AGACTAGTGTAATGCGTTTCCAATTT 59.570 34.615 0.00 0.00 0.00 1.82
2540 3197 6.977213 ACTAGTGTAATGCGTTTCCAATTTT 58.023 32.000 0.00 0.00 0.00 1.82
2541 3198 6.861055 ACTAGTGTAATGCGTTTCCAATTTTG 59.139 34.615 0.00 0.00 0.00 2.44
2542 3199 4.447389 AGTGTAATGCGTTTCCAATTTTGC 59.553 37.500 0.00 0.00 0.00 3.68
2543 3200 4.447389 GTGTAATGCGTTTCCAATTTTGCT 59.553 37.500 0.00 0.00 0.00 3.91
2544 3201 5.050431 GTGTAATGCGTTTCCAATTTTGCTT 60.050 36.000 0.00 0.00 0.00 3.91
2545 3202 4.730600 AATGCGTTTCCAATTTTGCTTC 57.269 36.364 0.00 0.00 0.00 3.86
2546 3203 3.170791 TGCGTTTCCAATTTTGCTTCA 57.829 38.095 0.00 0.00 0.00 3.02
2547 3204 3.122297 TGCGTTTCCAATTTTGCTTCAG 58.878 40.909 0.00 0.00 0.00 3.02
2548 3205 3.181482 TGCGTTTCCAATTTTGCTTCAGA 60.181 39.130 0.00 0.00 0.00 3.27
2549 3206 3.426525 GCGTTTCCAATTTTGCTTCAGAG 59.573 43.478 0.00 0.00 0.00 3.35
2550 3207 4.610945 CGTTTCCAATTTTGCTTCAGAGT 58.389 39.130 0.00 0.00 0.00 3.24
2551 3208 5.043248 CGTTTCCAATTTTGCTTCAGAGTT 58.957 37.500 0.00 0.00 0.00 3.01
2552 3209 5.173854 CGTTTCCAATTTTGCTTCAGAGTTC 59.826 40.000 0.00 0.00 0.00 3.01
2553 3210 5.850557 TTCCAATTTTGCTTCAGAGTTCA 57.149 34.783 0.00 0.00 0.00 3.18
2554 3211 5.443185 TCCAATTTTGCTTCAGAGTTCAG 57.557 39.130 0.00 0.00 0.00 3.02
2555 3212 5.132502 TCCAATTTTGCTTCAGAGTTCAGA 58.867 37.500 0.00 0.00 0.00 3.27
2556 3213 5.009010 TCCAATTTTGCTTCAGAGTTCAGAC 59.991 40.000 0.00 0.00 0.00 3.51
2557 3214 5.009410 CCAATTTTGCTTCAGAGTTCAGACT 59.991 40.000 0.00 0.00 39.32 3.24
2558 3215 6.205464 CCAATTTTGCTTCAGAGTTCAGACTA 59.795 38.462 0.00 0.00 35.88 2.59
2559 3216 7.296660 CAATTTTGCTTCAGAGTTCAGACTAG 58.703 38.462 0.00 0.00 35.88 2.57
2560 3217 5.537300 TTTGCTTCAGAGTTCAGACTAGT 57.463 39.130 0.00 0.00 35.88 2.57
2561 3218 4.511617 TGCTTCAGAGTTCAGACTAGTG 57.488 45.455 0.00 0.00 35.88 2.74
2562 3219 3.891977 TGCTTCAGAGTTCAGACTAGTGT 59.108 43.478 0.00 0.00 35.88 3.55
2563 3220 5.070685 TGCTTCAGAGTTCAGACTAGTGTA 58.929 41.667 0.00 0.00 35.88 2.90
2564 3221 5.535030 TGCTTCAGAGTTCAGACTAGTGTAA 59.465 40.000 0.00 0.00 35.88 2.41
2565 3222 6.209589 TGCTTCAGAGTTCAGACTAGTGTAAT 59.790 38.462 0.00 0.00 35.88 1.89
2566 3223 6.529829 GCTTCAGAGTTCAGACTAGTGTAATG 59.470 42.308 0.00 0.00 35.88 1.90
2567 3224 7.526142 TTCAGAGTTCAGACTAGTGTAATGT 57.474 36.000 0.00 0.00 35.88 2.71
2568 3225 6.914259 TCAGAGTTCAGACTAGTGTAATGTG 58.086 40.000 0.00 0.00 35.88 3.21
2569 3226 6.715264 TCAGAGTTCAGACTAGTGTAATGTGA 59.285 38.462 0.00 0.00 35.88 3.58
2570 3227 7.394641 TCAGAGTTCAGACTAGTGTAATGTGAT 59.605 37.037 0.00 0.00 35.88 3.06
2571 3228 8.031864 CAGAGTTCAGACTAGTGTAATGTGATT 58.968 37.037 0.00 0.00 35.88 2.57
2572 3229 8.247562 AGAGTTCAGACTAGTGTAATGTGATTC 58.752 37.037 0.00 0.00 35.88 2.52
2573 3230 7.324178 AGTTCAGACTAGTGTAATGTGATTCC 58.676 38.462 0.00 0.00 33.32 3.01
2574 3231 6.850752 TCAGACTAGTGTAATGTGATTCCA 57.149 37.500 0.00 0.00 0.00 3.53
2575 3232 7.239763 TCAGACTAGTGTAATGTGATTCCAA 57.760 36.000 0.00 0.00 0.00 3.53
2576 3233 7.851228 TCAGACTAGTGTAATGTGATTCCAAT 58.149 34.615 0.00 0.00 0.00 3.16
2577 3234 8.321353 TCAGACTAGTGTAATGTGATTCCAATT 58.679 33.333 0.00 0.00 0.00 2.32
2578 3235 8.950210 CAGACTAGTGTAATGTGATTCCAATTT 58.050 33.333 0.00 0.00 0.00 1.82
2581 3238 8.893727 ACTAGTGTAATGTGATTCCAATTTAGC 58.106 33.333 0.00 0.00 0.00 3.09
2582 3239 7.944729 AGTGTAATGTGATTCCAATTTAGCT 57.055 32.000 0.00 0.00 0.00 3.32
2583 3240 8.353423 AGTGTAATGTGATTCCAATTTAGCTT 57.647 30.769 0.00 0.00 0.00 3.74
2584 3241 8.462016 AGTGTAATGTGATTCCAATTTAGCTTC 58.538 33.333 0.00 0.00 0.00 3.86
2585 3242 8.243426 GTGTAATGTGATTCCAATTTAGCTTCA 58.757 33.333 0.00 0.00 0.00 3.02
2586 3243 8.461222 TGTAATGTGATTCCAATTTAGCTTCAG 58.539 33.333 0.00 0.00 0.00 3.02
2587 3244 7.707624 AATGTGATTCCAATTTAGCTTCAGA 57.292 32.000 0.00 0.00 0.00 3.27
2588 3245 6.500684 TGTGATTCCAATTTAGCTTCAGAC 57.499 37.500 0.00 0.00 0.00 3.51
2589 3246 6.240894 TGTGATTCCAATTTAGCTTCAGACT 58.759 36.000 0.00 0.00 0.00 3.24
2590 3247 7.394016 TGTGATTCCAATTTAGCTTCAGACTA 58.606 34.615 0.00 0.00 0.00 2.59
2594 3251 6.605471 TCCAATTTAGCTTCAGACTAGTGA 57.395 37.500 0.00 0.00 0.00 3.41
2607 3264 9.299963 CTTCAGACTAGTGAAATGTGATTCTAG 57.700 37.037 0.00 0.00 36.01 2.43
2615 3272 7.588512 AGTGAAATGTGATTCTAGTTTTGCTC 58.411 34.615 0.00 0.00 0.00 4.26
2631 3288 5.483685 TTTGCTCCAGACTAGTGTAATGT 57.516 39.130 0.00 0.00 0.00 2.71
2636 3293 6.154534 TGCTCCAGACTAGTGTAATGTGTAAT 59.845 38.462 0.00 0.00 0.00 1.89
2638 3295 7.549488 GCTCCAGACTAGTGTAATGTGTAATTT 59.451 37.037 0.00 0.00 0.00 1.82
2664 3321 4.861389 TGTAATTGTTTATACGTGGCGG 57.139 40.909 0.00 0.00 0.00 6.13
2666 3323 4.329528 TGTAATTGTTTATACGTGGCGGAC 59.670 41.667 0.00 0.00 0.00 4.79
2711 3368 5.048507 CGAACTATTACTAGGCCCTGTTTC 58.951 45.833 0.00 0.00 0.00 2.78
2717 3374 3.876309 ACTAGGCCCTGTTTCTTTCAA 57.124 42.857 0.00 0.00 0.00 2.69
2782 3597 3.359002 GCCAACAGACAAGGCCAG 58.641 61.111 5.01 0.00 42.58 4.85
2793 3608 3.458857 AGACAAGGCCAGATTCATCAGAT 59.541 43.478 5.01 0.00 0.00 2.90
2805 3620 0.541392 CATCAGATCCAACGACCCCA 59.459 55.000 0.00 0.00 0.00 4.96
2809 3624 1.078426 GATCCAACGACCCCACCTG 60.078 63.158 0.00 0.00 0.00 4.00
2818 3633 1.276622 GACCCCACCTGCTCTTCTTA 58.723 55.000 0.00 0.00 0.00 2.10
2821 3636 1.909302 CCCCACCTGCTCTTCTTAGAA 59.091 52.381 0.00 0.00 0.00 2.10
2833 3648 5.726413 GCTCTTCTTAGAAAGCGAATTCAGC 60.726 44.000 6.22 9.90 0.00 4.26
2839 3654 2.673368 AGAAAGCGAATTCAGCTAACGG 59.327 45.455 20.00 0.00 45.31 4.44
2850 3665 4.400529 TCAGCTAACGGCATCATCTAAA 57.599 40.909 0.00 0.00 44.79 1.85
2866 3681 7.550597 TCATCTAAAGTGGCAGATCAGATAT 57.449 36.000 0.00 0.00 28.88 1.63
2867 3682 8.655935 TCATCTAAAGTGGCAGATCAGATATA 57.344 34.615 0.00 0.00 28.88 0.86
2868 3683 8.526978 TCATCTAAAGTGGCAGATCAGATATAC 58.473 37.037 0.00 0.00 28.88 1.47
2869 3684 7.233389 TCTAAAGTGGCAGATCAGATATACC 57.767 40.000 0.00 0.00 0.00 2.73
2870 3685 7.013220 TCTAAAGTGGCAGATCAGATATACCT 58.987 38.462 0.00 0.00 0.00 3.08
2871 3686 8.170730 TCTAAAGTGGCAGATCAGATATACCTA 58.829 37.037 0.00 0.00 0.00 3.08
2872 3687 6.597832 AAGTGGCAGATCAGATATACCTAC 57.402 41.667 0.00 0.00 0.00 3.18
2873 3688 5.898120 AGTGGCAGATCAGATATACCTACT 58.102 41.667 0.00 0.00 0.00 2.57
2874 3689 5.714333 AGTGGCAGATCAGATATACCTACTG 59.286 44.000 0.00 0.00 0.00 2.74
2875 3690 5.019470 TGGCAGATCAGATATACCTACTGG 58.981 45.833 0.00 0.00 39.83 4.00
2876 3691 4.142049 GGCAGATCAGATATACCTACTGGC 60.142 50.000 0.00 0.00 40.94 4.85
2877 3692 4.709397 GCAGATCAGATATACCTACTGGCT 59.291 45.833 0.00 0.00 36.63 4.75
2878 3693 5.888724 GCAGATCAGATATACCTACTGGCTA 59.111 44.000 0.00 0.00 36.63 3.93
2879 3694 6.183360 GCAGATCAGATATACCTACTGGCTAC 60.183 46.154 0.00 0.00 36.63 3.58
2880 3695 7.116075 CAGATCAGATATACCTACTGGCTACT 58.884 42.308 0.00 0.00 36.63 2.57
2881 3696 7.066887 CAGATCAGATATACCTACTGGCTACTG 59.933 44.444 0.00 0.00 36.63 2.74
2882 3697 5.010933 TCAGATATACCTACTGGCTACTGC 58.989 45.833 0.00 0.00 36.63 4.40
2883 3698 5.013547 CAGATATACCTACTGGCTACTGCT 58.986 45.833 0.00 0.00 39.59 4.24
2884 3699 6.012771 TCAGATATACCTACTGGCTACTGCTA 60.013 42.308 0.00 0.00 39.59 3.49
2885 3700 6.094325 CAGATATACCTACTGGCTACTGCTAC 59.906 46.154 0.00 0.00 39.59 3.58
2886 3701 1.777941 ACCTACTGGCTACTGCTACC 58.222 55.000 0.00 0.00 39.59 3.18
2887 3702 1.006758 ACCTACTGGCTACTGCTACCA 59.993 52.381 0.00 0.00 39.59 3.25
2892 3707 0.252057 TGGCTACTGCTACCACTCCA 60.252 55.000 0.00 0.00 39.59 3.86
2897 3712 0.681733 ACTGCTACCACTCCACACTG 59.318 55.000 0.00 0.00 0.00 3.66
2913 3728 0.823769 ACTGTCACCAGCTCGTCTCA 60.824 55.000 0.00 0.00 42.81 3.27
2923 3738 0.458716 GCTCGTCTCAGTAAGGTGGC 60.459 60.000 0.00 0.00 0.00 5.01
2926 3741 1.272490 TCGTCTCAGTAAGGTGGCTTG 59.728 52.381 0.00 0.00 0.00 4.01
2927 3742 1.443802 GTCTCAGTAAGGTGGCTTGC 58.556 55.000 0.00 0.00 0.00 4.01
2928 3743 1.055849 TCTCAGTAAGGTGGCTTGCA 58.944 50.000 0.00 0.00 0.00 4.08
2957 3775 2.127708 ACCAACAAGGAGGTTCTGACT 58.872 47.619 0.00 0.00 41.22 3.41
2961 3779 1.546476 ACAAGGAGGTTCTGACTAGCG 59.454 52.381 0.00 0.00 0.00 4.26
2967 3785 2.737252 GAGGTTCTGACTAGCGTTTTGG 59.263 50.000 0.00 0.00 0.00 3.28
2993 3811 9.654663 GTACTACCAAGAAACTGAAATCTATGT 57.345 33.333 0.00 0.00 0.00 2.29
2995 3813 9.654663 ACTACCAAGAAACTGAAATCTATGTAC 57.345 33.333 0.00 0.00 0.00 2.90
2997 3815 7.159372 ACCAAGAAACTGAAATCTATGTACGT 58.841 34.615 0.00 0.00 0.00 3.57
2998 3816 7.117812 ACCAAGAAACTGAAATCTATGTACGTG 59.882 37.037 0.00 0.00 0.00 4.49
2999 3817 6.648725 AGAAACTGAAATCTATGTACGTGC 57.351 37.500 0.00 0.00 0.00 5.34
3000 3818 6.163476 AGAAACTGAAATCTATGTACGTGCA 58.837 36.000 9.28 9.28 0.00 4.57
3001 3819 6.311445 AGAAACTGAAATCTATGTACGTGCAG 59.689 38.462 12.93 0.00 0.00 4.41
3002 3820 3.865745 ACTGAAATCTATGTACGTGCAGC 59.134 43.478 12.93 0.00 0.00 5.25
3003 3821 4.115516 CTGAAATCTATGTACGTGCAGCT 58.884 43.478 12.93 0.00 0.00 4.24
3004 3822 3.865164 TGAAATCTATGTACGTGCAGCTG 59.135 43.478 12.93 10.11 0.00 4.24
3005 3823 1.858091 ATCTATGTACGTGCAGCTGC 58.142 50.000 31.89 31.89 42.50 5.25
3025 3843 3.093278 GGCGACGCTTGGATCAAG 58.907 61.111 20.77 3.50 43.57 3.02
3026 3844 2.464459 GGCGACGCTTGGATCAAGG 61.464 63.158 20.77 3.13 41.31 3.61
3027 3845 1.447838 GCGACGCTTGGATCAAGGA 60.448 57.895 13.73 0.00 41.31 3.36
3028 3846 1.424493 GCGACGCTTGGATCAAGGAG 61.424 60.000 13.73 0.00 41.31 3.69
3029 3847 0.108615 CGACGCTTGGATCAAGGAGT 60.109 55.000 9.34 0.00 41.31 3.85
3030 3848 1.646189 GACGCTTGGATCAAGGAGTC 58.354 55.000 0.37 0.37 41.31 3.36
3031 3849 1.205893 GACGCTTGGATCAAGGAGTCT 59.794 52.381 8.59 0.00 41.31 3.24
3032 3850 1.066573 ACGCTTGGATCAAGGAGTCTG 60.067 52.381 9.34 0.00 41.31 3.51
3033 3851 1.205655 CGCTTGGATCAAGGAGTCTGA 59.794 52.381 9.34 0.00 41.31 3.27
3034 3852 2.158986 CGCTTGGATCAAGGAGTCTGAT 60.159 50.000 9.34 0.00 41.31 2.90
3035 3853 3.465871 GCTTGGATCAAGGAGTCTGATC 58.534 50.000 12.01 12.01 41.31 2.92
3036 3854 3.118482 GCTTGGATCAAGGAGTCTGATCA 60.118 47.826 18.86 0.00 41.31 2.92
3037 3855 4.695396 CTTGGATCAAGGAGTCTGATCAG 58.305 47.826 17.07 17.07 39.94 2.90
3038 3856 3.986435 TGGATCAAGGAGTCTGATCAGA 58.014 45.455 21.67 21.67 39.94 3.27
3039 3857 4.554683 TGGATCAAGGAGTCTGATCAGAT 58.445 43.478 27.51 16.39 39.94 2.90
3040 3858 4.588106 TGGATCAAGGAGTCTGATCAGATC 59.412 45.833 27.51 22.39 39.94 2.75
3041 3859 4.588106 GGATCAAGGAGTCTGATCAGATCA 59.412 45.833 27.51 12.74 39.94 2.92
3054 3872 2.004733 TCAGATCAGATTGCAGTTGCG 58.995 47.619 0.00 0.00 45.83 4.85
3068 3886 2.066262 AGTTGCGATTACAAGACACGG 58.934 47.619 0.00 0.00 0.00 4.94
3072 3890 3.247442 TGCGATTACAAGACACGGTTAG 58.753 45.455 0.00 0.00 0.00 2.34
3105 3923 0.108138 CTTAGGTGCCGGAGTCCTTG 60.108 60.000 5.05 0.00 33.34 3.61
3110 3928 1.534729 GTGCCGGAGTCCTTGAAAAT 58.465 50.000 5.05 0.00 0.00 1.82
3128 3946 2.622064 ATCAGTAGATTTGGCGACCC 57.378 50.000 0.00 0.00 0.00 4.46
3129 3947 1.568504 TCAGTAGATTTGGCGACCCT 58.431 50.000 0.00 0.00 0.00 4.34
3130 3948 1.207089 TCAGTAGATTTGGCGACCCTG 59.793 52.381 0.00 0.00 0.00 4.45
3131 3949 1.066143 CAGTAGATTTGGCGACCCTGT 60.066 52.381 0.00 0.00 0.00 4.00
3132 3950 1.066143 AGTAGATTTGGCGACCCTGTG 60.066 52.381 0.00 0.00 0.00 3.66
3133 3951 0.392461 TAGATTTGGCGACCCTGTGC 60.392 55.000 0.00 0.00 0.00 4.57
3134 3952 1.675641 GATTTGGCGACCCTGTGCT 60.676 57.895 0.00 0.00 0.00 4.40
3135 3953 1.926511 GATTTGGCGACCCTGTGCTG 61.927 60.000 0.00 0.00 0.00 4.41
3136 3954 2.697147 ATTTGGCGACCCTGTGCTGT 62.697 55.000 0.00 0.00 0.00 4.40
3137 3955 4.624364 TGGCGACCCTGTGCTGTG 62.624 66.667 0.00 0.00 0.00 3.66
3140 3958 3.046087 CGACCCTGTGCTGTGCAG 61.046 66.667 0.00 0.00 40.08 4.41
3141 3959 2.111878 GACCCTGTGCTGTGCAGT 59.888 61.111 0.00 0.00 40.08 4.40
3142 3960 1.963338 GACCCTGTGCTGTGCAGTC 60.963 63.158 0.00 0.00 40.08 3.51
3143 3961 2.670934 CCCTGTGCTGTGCAGTCC 60.671 66.667 0.00 0.00 40.08 3.85
3144 3962 2.429058 CCTGTGCTGTGCAGTCCT 59.571 61.111 0.00 0.00 40.08 3.85
3145 3963 1.964891 CCTGTGCTGTGCAGTCCTG 60.965 63.158 0.00 0.00 40.08 3.86
3167 3985 4.248842 CATGGCGCGTATGGGGGA 62.249 66.667 8.43 0.00 0.00 4.81
3168 3986 3.484806 ATGGCGCGTATGGGGGAA 61.485 61.111 8.43 0.00 0.00 3.97
3169 3987 3.476031 ATGGCGCGTATGGGGGAAG 62.476 63.158 8.43 0.00 0.00 3.46
3170 3988 3.857038 GGCGCGTATGGGGGAAGA 61.857 66.667 8.43 0.00 0.00 2.87
3171 3989 2.188469 GCGCGTATGGGGGAAGAA 59.812 61.111 8.43 0.00 0.00 2.52
3172 3990 1.887707 GCGCGTATGGGGGAAGAAG 60.888 63.158 8.43 0.00 0.00 2.85
3173 3991 1.227556 CGCGTATGGGGGAAGAAGG 60.228 63.158 0.00 0.00 0.00 3.46
3174 3992 1.148498 GCGTATGGGGGAAGAAGGG 59.852 63.158 0.00 0.00 0.00 3.95
3175 3993 1.837090 CGTATGGGGGAAGAAGGGG 59.163 63.158 0.00 0.00 0.00 4.79
3176 3994 0.693092 CGTATGGGGGAAGAAGGGGA 60.693 60.000 0.00 0.00 0.00 4.81
3177 3995 1.603634 GTATGGGGGAAGAAGGGGAA 58.396 55.000 0.00 0.00 0.00 3.97
3178 3996 2.144450 GTATGGGGGAAGAAGGGGAAT 58.856 52.381 0.00 0.00 0.00 3.01
3179 3997 0.936691 ATGGGGGAAGAAGGGGAATG 59.063 55.000 0.00 0.00 0.00 2.67
3180 3998 1.221213 TGGGGGAAGAAGGGGAATGG 61.221 60.000 0.00 0.00 0.00 3.16
3181 3999 1.620818 GGGGAAGAAGGGGAATGGG 59.379 63.158 0.00 0.00 0.00 4.00
3182 4000 1.620818 GGGAAGAAGGGGAATGGGG 59.379 63.158 0.00 0.00 0.00 4.96
3183 4001 1.620818 GGAAGAAGGGGAATGGGGG 59.379 63.158 0.00 0.00 0.00 5.40
3184 4002 1.221909 GGAAGAAGGGGAATGGGGGT 61.222 60.000 0.00 0.00 0.00 4.95
3185 4003 0.033109 GAAGAAGGGGAATGGGGGTG 60.033 60.000 0.00 0.00 0.00 4.61
3186 4004 1.518431 AAGAAGGGGAATGGGGGTGG 61.518 60.000 0.00 0.00 0.00 4.61
3187 4005 1.933812 GAAGGGGAATGGGGGTGGA 60.934 63.158 0.00 0.00 0.00 4.02
3188 4006 2.224805 GAAGGGGAATGGGGGTGGAC 62.225 65.000 0.00 0.00 0.00 4.02
3189 4007 2.617215 GGGGAATGGGGGTGGACT 60.617 66.667 0.00 0.00 0.00 3.85
3190 4008 2.683475 GGGAATGGGGGTGGACTG 59.317 66.667 0.00 0.00 0.00 3.51
3191 4009 2.683475 GGAATGGGGGTGGACTGG 59.317 66.667 0.00 0.00 0.00 4.00
3192 4010 2.238701 GGAATGGGGGTGGACTGGT 61.239 63.158 0.00 0.00 0.00 4.00
3193 4011 1.303282 GAATGGGGGTGGACTGGTC 59.697 63.158 0.00 0.00 0.00 4.02
3194 4012 2.536997 GAATGGGGGTGGACTGGTCG 62.537 65.000 0.00 0.00 0.00 4.79
3197 4015 4.394712 GGGGTGGACTGGTCGCTG 62.395 72.222 0.00 0.00 0.00 5.18
3198 4016 3.311110 GGGTGGACTGGTCGCTGA 61.311 66.667 0.00 0.00 0.00 4.26
3199 4017 2.048127 GGTGGACTGGTCGCTGAC 60.048 66.667 0.79 0.79 0.00 3.51
3200 4018 2.430921 GTGGACTGGTCGCTGACG 60.431 66.667 3.27 0.00 42.01 4.35
3227 4045 2.341318 CCCGCGGGAAAAGTTAAAAG 57.659 50.000 41.82 6.56 37.50 2.27
3228 4046 1.610038 CCCGCGGGAAAAGTTAAAAGT 59.390 47.619 41.82 0.00 37.50 2.66
3229 4047 2.351060 CCCGCGGGAAAAGTTAAAAGTC 60.351 50.000 41.82 0.00 37.50 3.01
3230 4048 2.551032 CCGCGGGAAAAGTTAAAAGTCT 59.449 45.455 20.10 0.00 0.00 3.24
3231 4049 3.004002 CCGCGGGAAAAGTTAAAAGTCTT 59.996 43.478 20.10 0.00 0.00 3.01
3232 4050 4.498513 CCGCGGGAAAAGTTAAAAGTCTTT 60.499 41.667 20.10 0.00 35.73 2.52
3233 4051 5.038683 CGCGGGAAAAGTTAAAAGTCTTTT 58.961 37.500 14.76 14.76 43.55 2.27
3234 4052 5.517411 CGCGGGAAAAGTTAAAAGTCTTTTT 59.483 36.000 15.53 3.15 41.79 1.94
3235 4053 6.291427 CGCGGGAAAAGTTAAAAGTCTTTTTC 60.291 38.462 15.53 9.61 41.79 2.29
3236 4054 6.755141 GCGGGAAAAGTTAAAAGTCTTTTTCT 59.245 34.615 15.53 11.46 41.79 2.52
3237 4055 7.277098 GCGGGAAAAGTTAAAAGTCTTTTTCTT 59.723 33.333 15.53 15.78 41.79 2.52
3238 4056 9.146984 CGGGAAAAGTTAAAAGTCTTTTTCTTT 57.853 29.630 21.73 21.73 41.79 2.52
3256 4074 3.885358 CTTTAAGCGAAAGAAAAGCGGT 58.115 40.909 8.07 0.00 46.57 5.68
3257 4075 2.961522 TAAGCGAAAGAAAAGCGGTG 57.038 45.000 0.00 0.00 35.79 4.94
3258 4076 1.021968 AAGCGAAAGAAAAGCGGTGT 58.978 45.000 0.00 0.00 35.79 4.16
3259 4077 0.307760 AGCGAAAGAAAAGCGGTGTG 59.692 50.000 0.00 0.00 34.21 3.82
3260 4078 1.268778 GCGAAAGAAAAGCGGTGTGC 61.269 55.000 0.00 0.00 46.98 4.57
3271 4089 3.721706 GGTGTGCCCCCTGGAGAG 61.722 72.222 0.00 0.00 0.00 3.20
3272 4090 4.416738 GTGTGCCCCCTGGAGAGC 62.417 72.222 0.00 0.00 0.00 4.09
3273 4091 4.664267 TGTGCCCCCTGGAGAGCT 62.664 66.667 0.00 0.00 0.00 4.09
3274 4092 3.791586 GTGCCCCCTGGAGAGCTC 61.792 72.222 5.27 5.27 0.00 4.09
3285 4103 0.031449 GGAGAGCTCCTATGTGACGC 59.969 60.000 10.93 0.00 46.16 5.19
3286 4104 1.028905 GAGAGCTCCTATGTGACGCT 58.971 55.000 10.93 0.00 0.00 5.07
3287 4105 1.001815 GAGAGCTCCTATGTGACGCTC 60.002 57.143 10.93 0.00 45.49 5.03
3288 4106 1.028905 GAGCTCCTATGTGACGCTCT 58.971 55.000 0.87 0.00 42.72 4.09
3289 4107 1.001815 GAGCTCCTATGTGACGCTCTC 60.002 57.143 0.87 0.00 42.72 3.20
3290 4108 1.028905 GCTCCTATGTGACGCTCTCT 58.971 55.000 0.00 0.00 0.00 3.10
3291 4109 1.268999 GCTCCTATGTGACGCTCTCTG 60.269 57.143 0.00 0.00 0.00 3.35
3292 4110 0.741326 TCCTATGTGACGCTCTCTGC 59.259 55.000 0.00 0.00 38.57 4.26
3309 4127 2.483745 CGGTAAGCAGTCGAGCGA 59.516 61.111 0.00 0.00 40.15 4.93
3310 4128 1.064296 CGGTAAGCAGTCGAGCGAT 59.936 57.895 0.00 0.00 40.15 4.58
3311 4129 0.930742 CGGTAAGCAGTCGAGCGATC 60.931 60.000 0.00 0.00 40.15 3.69
3312 4130 0.930742 GGTAAGCAGTCGAGCGATCG 60.931 60.000 18.51 18.51 40.15 3.69
3313 4131 1.298413 TAAGCAGTCGAGCGATCGC 60.298 57.895 32.15 32.15 40.15 4.58
3314 4132 1.988834 TAAGCAGTCGAGCGATCGCA 61.989 55.000 38.60 18.60 44.88 5.10
3315 4133 2.619840 AAGCAGTCGAGCGATCGCAT 62.620 55.000 38.60 24.69 44.88 4.73
3316 4134 1.370535 GCAGTCGAGCGATCGCATA 60.371 57.895 38.60 21.98 44.88 3.14
3317 4135 1.333584 GCAGTCGAGCGATCGCATAG 61.334 60.000 38.60 27.90 44.88 2.23
3318 4136 0.727457 CAGTCGAGCGATCGCATAGG 60.727 60.000 38.60 24.18 44.88 2.57
3319 4137 1.442857 GTCGAGCGATCGCATAGGG 60.443 63.158 38.60 22.53 44.88 3.53
3320 4138 2.126307 CGAGCGATCGCATAGGGG 60.126 66.667 38.60 18.07 44.88 4.79
3321 4139 2.626780 CGAGCGATCGCATAGGGGA 61.627 63.158 38.60 0.00 44.88 4.81
3327 4145 3.672066 ATCGCATAGGGGATCGAGA 57.328 52.632 0.50 0.00 42.46 4.04
3328 4146 1.468985 ATCGCATAGGGGATCGAGAG 58.531 55.000 0.50 0.00 42.46 3.20
3329 4147 1.004862 ATCGCATAGGGGATCGAGAGA 59.995 52.381 0.50 0.00 42.46 3.10
3344 4162 3.247563 GAGAGATCTCGCGAACACTAG 57.752 52.381 16.97 0.00 32.78 2.57
3345 4163 2.867368 GAGAGATCTCGCGAACACTAGA 59.133 50.000 16.97 2.56 32.78 2.43
3346 4164 2.610374 AGAGATCTCGCGAACACTAGAC 59.390 50.000 16.97 0.00 34.09 2.59
3347 4165 1.671845 AGATCTCGCGAACACTAGACC 59.328 52.381 11.33 0.00 0.00 3.85
3348 4166 1.671845 GATCTCGCGAACACTAGACCT 59.328 52.381 11.33 0.00 0.00 3.85
3349 4167 1.085091 TCTCGCGAACACTAGACCTC 58.915 55.000 11.33 0.00 0.00 3.85
3350 4168 0.099082 CTCGCGAACACTAGACCTCC 59.901 60.000 11.33 0.00 0.00 4.30
3351 4169 0.322277 TCGCGAACACTAGACCTCCT 60.322 55.000 6.20 0.00 0.00 3.69
3352 4170 0.179161 CGCGAACACTAGACCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
3353 4171 0.458716 GCGAACACTAGACCTCCTGC 60.459 60.000 0.00 0.00 0.00 4.85
3354 4172 1.178276 CGAACACTAGACCTCCTGCT 58.822 55.000 0.00 0.00 0.00 4.24
3355 4173 1.546476 CGAACACTAGACCTCCTGCTT 59.454 52.381 0.00 0.00 0.00 3.91
3356 4174 2.416162 CGAACACTAGACCTCCTGCTTC 60.416 54.545 0.00 0.00 0.00 3.86
3357 4175 1.562783 ACACTAGACCTCCTGCTTCC 58.437 55.000 0.00 0.00 0.00 3.46
3358 4176 0.457851 CACTAGACCTCCTGCTTCCG 59.542 60.000 0.00 0.00 0.00 4.30
3359 4177 0.331954 ACTAGACCTCCTGCTTCCGA 59.668 55.000 0.00 0.00 0.00 4.55
3360 4178 1.028905 CTAGACCTCCTGCTTCCGAG 58.971 60.000 0.00 0.00 0.00 4.63
3371 4189 3.056458 TTCCGAGCAAGGAAGCGA 58.944 55.556 8.59 0.00 44.66 4.93
3372 4190 1.369692 TTCCGAGCAAGGAAGCGAA 59.630 52.632 8.59 0.00 44.66 4.70
3373 4191 0.949105 TTCCGAGCAAGGAAGCGAAC 60.949 55.000 8.59 0.00 44.66 3.95
3374 4192 2.391389 CCGAGCAAGGAAGCGAACC 61.391 63.158 0.00 0.00 40.15 3.62
3375 4193 1.667830 CGAGCAAGGAAGCGAACCA 60.668 57.895 0.00 0.00 40.15 3.67
3376 4194 1.227999 CGAGCAAGGAAGCGAACCAA 61.228 55.000 0.00 0.00 40.15 3.67
3377 4195 1.168714 GAGCAAGGAAGCGAACCAAT 58.831 50.000 0.00 0.00 40.15 3.16
3378 4196 1.541588 GAGCAAGGAAGCGAACCAATT 59.458 47.619 0.00 0.00 40.15 2.32
3379 4197 1.270550 AGCAAGGAAGCGAACCAATTG 59.729 47.619 0.00 0.00 40.15 2.32
3380 4198 1.269448 GCAAGGAAGCGAACCAATTGA 59.731 47.619 7.12 0.00 0.00 2.57
3381 4199 2.669391 GCAAGGAAGCGAACCAATTGAG 60.669 50.000 7.12 0.00 0.00 3.02
3382 4200 1.168714 AGGAAGCGAACCAATTGAGC 58.831 50.000 7.12 7.01 0.00 4.26
3383 4201 1.168714 GGAAGCGAACCAATTGAGCT 58.831 50.000 7.12 9.20 40.20 4.09
3384 4202 2.027192 AGGAAGCGAACCAATTGAGCTA 60.027 45.455 7.12 0.00 37.15 3.32
3385 4203 2.352960 GGAAGCGAACCAATTGAGCTAG 59.647 50.000 7.12 0.00 37.15 3.42
3386 4204 1.373570 AGCGAACCAATTGAGCTAGC 58.626 50.000 6.62 6.62 36.28 3.42
3387 4205 1.065854 AGCGAACCAATTGAGCTAGCT 60.066 47.619 19.45 19.45 36.28 3.32
3388 4206 2.168521 AGCGAACCAATTGAGCTAGCTA 59.831 45.455 19.38 2.78 36.28 3.32
3389 4207 2.541762 GCGAACCAATTGAGCTAGCTAG 59.458 50.000 19.38 16.84 0.00 3.42
3403 4221 4.437239 GCTAGCTAGCTTTCTTGATCACA 58.563 43.478 33.71 0.00 45.62 3.58
3404 4222 4.507388 GCTAGCTAGCTTTCTTGATCACAG 59.493 45.833 33.71 10.40 45.62 3.66
3405 4223 4.815533 AGCTAGCTTTCTTGATCACAGA 57.184 40.909 12.68 0.00 0.00 3.41
3406 4224 5.157940 AGCTAGCTTTCTTGATCACAGAA 57.842 39.130 12.68 13.14 0.00 3.02
3407 4225 4.934602 AGCTAGCTTTCTTGATCACAGAAC 59.065 41.667 12.68 8.77 0.00 3.01
3408 4226 4.692625 GCTAGCTTTCTTGATCACAGAACA 59.307 41.667 7.70 9.26 0.00 3.18
3409 4227 5.353678 GCTAGCTTTCTTGATCACAGAACAT 59.646 40.000 7.70 9.71 0.00 2.71
3410 4228 6.128063 GCTAGCTTTCTTGATCACAGAACATT 60.128 38.462 7.70 9.24 0.00 2.71
3411 4229 6.010294 AGCTTTCTTGATCACAGAACATTG 57.990 37.500 15.50 9.92 0.00 2.82
3412 4230 4.620184 GCTTTCTTGATCACAGAACATTGC 59.380 41.667 15.50 13.68 0.00 3.56
3413 4231 5.765176 CTTTCTTGATCACAGAACATTGCA 58.235 37.500 15.50 0.00 0.00 4.08
3414 4232 5.771153 TTCTTGATCACAGAACATTGCAA 57.229 34.783 0.00 0.00 0.00 4.08
3415 4233 5.771153 TCTTGATCACAGAACATTGCAAA 57.229 34.783 1.71 0.00 0.00 3.68
3416 4234 6.146601 TCTTGATCACAGAACATTGCAAAA 57.853 33.333 1.71 0.00 0.00 2.44
3417 4235 5.978919 TCTTGATCACAGAACATTGCAAAAC 59.021 36.000 1.71 0.00 0.00 2.43
3418 4236 4.619973 TGATCACAGAACATTGCAAAACC 58.380 39.130 1.71 0.00 0.00 3.27
3419 4237 4.341806 TGATCACAGAACATTGCAAAACCT 59.658 37.500 1.71 0.00 0.00 3.50
3420 4238 4.734398 TCACAGAACATTGCAAAACCTT 57.266 36.364 1.71 0.00 0.00 3.50
3421 4239 5.843673 TCACAGAACATTGCAAAACCTTA 57.156 34.783 1.71 0.00 0.00 2.69
3422 4240 6.214191 TCACAGAACATTGCAAAACCTTAA 57.786 33.333 1.71 0.00 0.00 1.85
3423 4241 6.272318 TCACAGAACATTGCAAAACCTTAAG 58.728 36.000 1.71 0.00 0.00 1.85
3424 4242 6.096141 TCACAGAACATTGCAAAACCTTAAGA 59.904 34.615 1.71 0.00 0.00 2.10
3425 4243 6.756074 CACAGAACATTGCAAAACCTTAAGAA 59.244 34.615 1.71 0.00 0.00 2.52
3426 4244 7.277539 CACAGAACATTGCAAAACCTTAAGAAA 59.722 33.333 1.71 0.00 0.00 2.52
3427 4245 7.821846 ACAGAACATTGCAAAACCTTAAGAAAA 59.178 29.630 1.71 0.00 0.00 2.29
3428 4246 8.116136 CAGAACATTGCAAAACCTTAAGAAAAC 58.884 33.333 1.71 0.00 0.00 2.43
3429 4247 8.040727 AGAACATTGCAAAACCTTAAGAAAACT 58.959 29.630 1.71 0.00 0.00 2.66
3430 4248 7.770801 ACATTGCAAAACCTTAAGAAAACTC 57.229 32.000 1.71 0.00 0.00 3.01
3431 4249 7.327214 ACATTGCAAAACCTTAAGAAAACTCA 58.673 30.769 1.71 0.00 0.00 3.41
3432 4250 7.821846 ACATTGCAAAACCTTAAGAAAACTCAA 59.178 29.630 1.71 2.28 0.00 3.02
3433 4251 8.663911 CATTGCAAAACCTTAAGAAAACTCAAA 58.336 29.630 1.71 0.00 0.00 2.69
3434 4252 7.589574 TGCAAAACCTTAAGAAAACTCAAAC 57.410 32.000 3.36 0.00 0.00 2.93
3435 4253 6.309251 TGCAAAACCTTAAGAAAACTCAAACG 59.691 34.615 3.36 0.00 0.00 3.60
3436 4254 6.692392 CAAAACCTTAAGAAAACTCAAACGC 58.308 36.000 3.36 0.00 0.00 4.84
3437 4255 4.563337 ACCTTAAGAAAACTCAAACGCC 57.437 40.909 3.36 0.00 0.00 5.68
3438 4256 3.002965 ACCTTAAGAAAACTCAAACGCCG 59.997 43.478 3.36 0.00 0.00 6.46
3439 4257 3.249080 CCTTAAGAAAACTCAAACGCCGA 59.751 43.478 3.36 0.00 0.00 5.54
3440 4258 4.083484 CCTTAAGAAAACTCAAACGCCGAT 60.083 41.667 3.36 0.00 0.00 4.18
3441 4259 3.537793 AAGAAAACTCAAACGCCGATC 57.462 42.857 0.00 0.00 0.00 3.69
3442 4260 1.804748 AGAAAACTCAAACGCCGATCC 59.195 47.619 0.00 0.00 0.00 3.36
3443 4261 0.515564 AAAACTCAAACGCCGATCCG 59.484 50.000 0.00 0.00 0.00 4.18
3444 4262 0.320073 AAACTCAAACGCCGATCCGA 60.320 50.000 0.00 0.00 0.00 4.55
3445 4263 1.012486 AACTCAAACGCCGATCCGAC 61.012 55.000 0.00 0.00 0.00 4.79
3446 4264 2.125832 TCAAACGCCGATCCGACC 60.126 61.111 0.00 0.00 0.00 4.79
3447 4265 2.433491 CAAACGCCGATCCGACCA 60.433 61.111 0.00 0.00 0.00 4.02
3448 4266 1.813753 CAAACGCCGATCCGACCAT 60.814 57.895 0.00 0.00 0.00 3.55
3449 4267 1.078708 AAACGCCGATCCGACCATT 60.079 52.632 0.00 0.00 0.00 3.16
3450 4268 0.675522 AAACGCCGATCCGACCATTT 60.676 50.000 0.00 0.00 0.00 2.32
3451 4269 0.675522 AACGCCGATCCGACCATTTT 60.676 50.000 0.00 0.00 0.00 1.82
3452 4270 0.675522 ACGCCGATCCGACCATTTTT 60.676 50.000 0.00 0.00 0.00 1.94
3453 4271 0.027586 CGCCGATCCGACCATTTTTC 59.972 55.000 0.00 0.00 0.00 2.29
3454 4272 1.091537 GCCGATCCGACCATTTTTCA 58.908 50.000 0.00 0.00 0.00 2.69
3455 4273 1.470890 GCCGATCCGACCATTTTTCAA 59.529 47.619 0.00 0.00 0.00 2.69
3456 4274 2.094957 GCCGATCCGACCATTTTTCAAA 60.095 45.455 0.00 0.00 0.00 2.69
3457 4275 3.612955 GCCGATCCGACCATTTTTCAAAA 60.613 43.478 0.00 0.00 0.00 2.44
3458 4276 4.551388 CCGATCCGACCATTTTTCAAAAA 58.449 39.130 0.00 0.00 0.00 1.94
3459 4277 5.167845 CCGATCCGACCATTTTTCAAAAAT 58.832 37.500 1.98 1.98 0.00 1.82
3460 4278 5.637387 CCGATCCGACCATTTTTCAAAAATT 59.363 36.000 5.29 0.00 0.00 1.82
3461 4279 6.183360 CCGATCCGACCATTTTTCAAAAATTC 60.183 38.462 5.29 1.78 0.00 2.17
3462 4280 6.364706 CGATCCGACCATTTTTCAAAAATTCA 59.635 34.615 5.29 0.00 0.00 2.57
3463 4281 7.095857 CGATCCGACCATTTTTCAAAAATTCAA 60.096 33.333 5.29 0.00 0.00 2.69
3464 4282 7.849804 TCCGACCATTTTTCAAAAATTCAAA 57.150 28.000 5.29 0.00 0.00 2.69
3465 4283 7.689299 TCCGACCATTTTTCAAAAATTCAAAC 58.311 30.769 5.29 0.00 0.00 2.93
3466 4284 6.626882 CCGACCATTTTTCAAAAATTCAAACG 59.373 34.615 5.29 7.59 0.00 3.60
3467 4285 6.138391 CGACCATTTTTCAAAAATTCAAACGC 59.862 34.615 5.29 0.00 0.00 4.84
3468 4286 6.846350 ACCATTTTTCAAAAATTCAAACGCA 58.154 28.000 5.29 0.00 0.00 5.24
3469 4287 7.308435 ACCATTTTTCAAAAATTCAAACGCAA 58.692 26.923 5.29 0.00 0.00 4.85
3470 4288 7.809806 ACCATTTTTCAAAAATTCAAACGCAAA 59.190 25.926 5.29 0.00 0.00 3.68
3471 4289 8.642020 CCATTTTTCAAAAATTCAAACGCAAAA 58.358 25.926 5.29 0.00 0.00 2.44
3472 4290 9.445698 CATTTTTCAAAAATTCAAACGCAAAAC 57.554 25.926 5.29 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.079787 TGGGGGATATCTATTGCCTTATGC 60.080 45.833 2.05 0.00 41.77 3.14
14 15 5.715439 TGGGGGATATCTATTGCCTTATG 57.285 43.478 2.05 0.00 0.00 1.90
15 16 6.932960 AATGGGGGATATCTATTGCCTTAT 57.067 37.500 2.05 0.00 0.00 1.73
16 17 6.578238 CGAAATGGGGGATATCTATTGCCTTA 60.578 42.308 2.05 0.00 0.00 2.69
17 18 5.583932 GAAATGGGGGATATCTATTGCCTT 58.416 41.667 2.05 0.00 0.00 4.35
18 19 4.324563 CGAAATGGGGGATATCTATTGCCT 60.325 45.833 2.05 0.00 0.00 4.75
19 20 3.947834 CGAAATGGGGGATATCTATTGCC 59.052 47.826 2.05 0.00 0.00 4.52
20 21 4.636206 GTCGAAATGGGGGATATCTATTGC 59.364 45.833 2.05 0.00 0.00 3.56
21 22 5.804639 TGTCGAAATGGGGGATATCTATTG 58.195 41.667 2.05 0.00 0.00 1.90
22 23 5.548056 ACTGTCGAAATGGGGGATATCTATT 59.452 40.000 2.05 0.00 0.00 1.73
26 27 3.771577 ACTGTCGAAATGGGGGATATC 57.228 47.619 0.00 0.00 0.00 1.63
41 42 8.079203 CAGAGGTGTCATAATCATACTACTGTC 58.921 40.741 0.00 0.00 0.00 3.51
42 43 7.780271 TCAGAGGTGTCATAATCATACTACTGT 59.220 37.037 0.00 0.00 0.00 3.55
77 78 7.411486 AGAGAAATCTTGCAAGCTAGTAGTA 57.589 36.000 21.99 1.87 0.00 1.82
250 251 3.719883 TTTGTGGACCGTGCGACGT 62.720 57.895 0.00 0.00 40.58 4.34
267 268 5.294060 ACGCGTTTTATTACCGTGGATATTT 59.706 36.000 5.58 0.00 36.48 1.40
288 289 1.579429 GGGTGGTTGTTGATCACGC 59.421 57.895 0.00 0.00 37.23 5.34
289 290 0.601576 TCGGGTGGTTGTTGATCACG 60.602 55.000 0.00 0.00 32.65 4.35
290 291 1.156736 CTCGGGTGGTTGTTGATCAC 58.843 55.000 0.00 0.00 0.00 3.06
291 292 0.036164 CCTCGGGTGGTTGTTGATCA 59.964 55.000 0.00 0.00 0.00 2.92
292 293 1.305930 GCCTCGGGTGGTTGTTGATC 61.306 60.000 0.00 0.00 0.00 2.92
293 294 1.303317 GCCTCGGGTGGTTGTTGAT 60.303 57.895 0.00 0.00 0.00 2.57
294 295 2.112297 GCCTCGGGTGGTTGTTGA 59.888 61.111 0.00 0.00 0.00 3.18
295 296 2.983592 GGCCTCGGGTGGTTGTTG 60.984 66.667 0.00 0.00 0.00 3.33
296 297 3.494254 TGGCCTCGGGTGGTTGTT 61.494 61.111 3.32 0.00 0.00 2.83
297 298 4.265056 GTGGCCTCGGGTGGTTGT 62.265 66.667 3.32 0.00 0.00 3.32
306 307 2.125673 CACTAACCCGTGGCCTCG 60.126 66.667 20.08 20.08 0.00 4.63
307 308 2.267961 CCACTAACCCGTGGCCTC 59.732 66.667 3.32 0.00 46.98 4.70
338 339 5.990408 AGATCTTAGACTTTTGCAAACACG 58.010 37.500 12.39 6.09 0.00 4.49
373 695 6.318648 TCTCTGTCCAACATATATTTTGTGCC 59.681 38.462 10.04 0.19 0.00 5.01
389 711 0.039764 ACCCGATCAGTCTCTGTCCA 59.960 55.000 0.00 0.00 32.61 4.02
412 734 5.200368 ACATTTGCTCCTTTGGTAACTTG 57.800 39.130 0.00 0.00 37.61 3.16
419 741 4.942852 TGTTTGTACATTTGCTCCTTTGG 58.057 39.130 0.00 0.00 0.00 3.28
446 768 4.042311 TCTTTTCAAGGGTACATGTAGGCA 59.958 41.667 5.62 0.00 0.00 4.75
496 1056 2.972021 TCTTGATCAGTGGTGGTGAGAA 59.028 45.455 0.00 0.00 0.00 2.87
502 1062 5.124457 CCTTGTTTATCTTGATCAGTGGTGG 59.876 44.000 0.00 0.00 0.00 4.61
528 1088 0.770590 CGTCGAGGAAATGATACGCG 59.229 55.000 3.53 3.53 0.00 6.01
531 1091 3.329743 TCGTCGTCGAGGAAATGATAC 57.670 47.619 14.83 0.00 41.35 2.24
549 1109 0.636733 GCAGTGCGCAAATTTGATCG 59.363 50.000 22.31 16.62 41.79 3.69
556 1116 0.890542 TGGAGAAGCAGTGCGCAAAT 60.891 50.000 14.00 0.00 46.13 2.32
557 1117 1.525765 TGGAGAAGCAGTGCGCAAA 60.526 52.632 14.00 0.00 46.13 3.68
564 1124 2.546795 CGAACTTCAGTGGAGAAGCAGT 60.547 50.000 5.11 0.00 46.97 4.40
567 1127 2.062519 GACGAACTTCAGTGGAGAAGC 58.937 52.381 5.11 0.00 46.97 3.86
617 1177 4.054671 GTGCTATCTGCTCCAACATAGTC 58.945 47.826 0.00 0.00 43.37 2.59
621 1181 3.572632 ATGTGCTATCTGCTCCAACAT 57.427 42.857 0.00 0.00 43.37 2.71
624 1184 6.175471 CCATATAATGTGCTATCTGCTCCAA 58.825 40.000 0.00 0.00 43.37 3.53
635 1195 5.455392 TGCCATATCCCATATAATGTGCT 57.545 39.130 0.00 0.00 0.00 4.40
714 1274 6.050432 TGATTATCTTCCCATTGCAAAATGC 58.950 36.000 1.71 0.00 45.29 3.56
733 1293 4.338012 TCACGTTAGGTCCAGACTGATTA 58.662 43.478 3.32 0.00 0.00 1.75
741 1314 7.837202 TTTGTAATATTCACGTTAGGTCCAG 57.163 36.000 0.00 0.00 0.00 3.86
770 1344 8.806177 ATAAAATAAACAAAAACTGACCGACC 57.194 30.769 0.00 0.00 0.00 4.79
864 1438 4.060667 GGGTGGATGGGTGGGTGG 62.061 72.222 0.00 0.00 0.00 4.61
896 1470 3.572255 TCTTGGCAAAATAGAAACCGCTT 59.428 39.130 0.00 0.00 0.00 4.68
936 1513 1.362224 TTTGACTAGCCTGGCCTCTT 58.638 50.000 16.57 0.00 0.00 2.85
946 1523 4.083271 GGTCTGTGGACAAATTTGACTAGC 60.083 45.833 24.64 12.27 43.77 3.42
1033 1620 2.834549 AGGAGATGAACCGACTCACAAT 59.165 45.455 0.00 0.00 33.00 2.71
1093 1683 2.024846 TCTCTACCACCTTCTCCTCTGG 60.025 54.545 0.00 0.00 0.00 3.86
1144 1737 2.892425 CGCCTCCTCGACAATGGC 60.892 66.667 0.00 0.00 40.14 4.40
1362 1958 1.068055 GCCTTGTCGTCTTTCTCCGTA 60.068 52.381 0.00 0.00 0.00 4.02
1416 2012 6.867816 CCATGTTAGCAACAGCAATTTCTAAA 59.132 34.615 7.58 0.00 45.95 1.85
1636 2237 4.023291 TGAGCAACCAAAGTTTTCTTCCT 58.977 39.130 0.00 0.00 39.48 3.36
1713 2316 2.099141 TCTTCAAATGGCTGTCTCCG 57.901 50.000 0.00 0.00 0.00 4.63
1763 2366 4.142687 ACTCAATAATTACCAGCGTTGTGC 60.143 41.667 0.00 0.00 46.98 4.57
1764 2367 5.545658 ACTCAATAATTACCAGCGTTGTG 57.454 39.130 0.00 0.00 0.00 3.33
1777 2386 7.201767 GCCTACATCAGAAGCAAACTCAATAAT 60.202 37.037 0.00 0.00 0.00 1.28
1809 2418 2.544267 CGGCTGAAAGTTTTTCGAGTCT 59.456 45.455 0.00 0.00 35.30 3.24
1893 2502 1.794222 CTTCACCGATCCAAACCGC 59.206 57.895 0.00 0.00 0.00 5.68
1939 2548 5.997746 TCTTGAAAAGGTACCTCAACTCATG 59.002 40.000 16.64 15.73 46.24 3.07
2172 2786 3.953775 AGGGTTGGGTGCACTCCG 61.954 66.667 15.70 0.00 0.00 4.63
2175 2789 1.715019 TAAGCAGGGTTGGGTGCACT 61.715 55.000 17.98 0.00 42.47 4.40
2199 2813 4.666253 TCCACTGGCTGGCCTTGC 62.666 66.667 13.05 8.68 40.39 4.01
2245 2868 2.751806 TGATTTTGTGCGGTATCATGCA 59.248 40.909 0.00 0.00 39.13 3.96
2257 2880 3.428045 GGCGATTCCTCCTTGATTTTGTG 60.428 47.826 0.00 0.00 0.00 3.33
2346 2996 2.108952 GGGTATCCTTGATTCCCATGCT 59.891 50.000 12.41 0.00 45.31 3.79
2435 3091 2.904131 GCTTCCTCCTCCCCGAAG 59.096 66.667 0.00 0.00 36.82 3.79
2436 3092 3.075005 CGCTTCCTCCTCCCCGAA 61.075 66.667 0.00 0.00 0.00 4.30
2506 3163 4.201628 CGCATTACACTAGTCTGAAGCAAC 60.202 45.833 0.00 0.00 0.00 4.17
2519 3176 4.447389 GCAAAATTGGAAACGCATTACACT 59.553 37.500 0.00 0.00 29.14 3.55
2520 3177 4.447389 AGCAAAATTGGAAACGCATTACAC 59.553 37.500 0.00 0.00 29.14 2.90
2521 3178 4.626042 AGCAAAATTGGAAACGCATTACA 58.374 34.783 0.00 0.00 0.00 2.41
2522 3179 5.176590 TGAAGCAAAATTGGAAACGCATTAC 59.823 36.000 0.00 0.00 0.00 1.89
2523 3180 5.292765 TGAAGCAAAATTGGAAACGCATTA 58.707 33.333 0.00 0.00 0.00 1.90
2524 3181 4.125703 TGAAGCAAAATTGGAAACGCATT 58.874 34.783 0.00 0.00 0.00 3.56
2525 3182 3.726607 TGAAGCAAAATTGGAAACGCAT 58.273 36.364 0.00 0.00 0.00 4.73
2526 3183 3.122297 CTGAAGCAAAATTGGAAACGCA 58.878 40.909 0.00 0.00 0.00 5.24
2527 3184 3.380142 TCTGAAGCAAAATTGGAAACGC 58.620 40.909 0.00 0.00 0.00 4.84
2528 3185 4.610945 ACTCTGAAGCAAAATTGGAAACG 58.389 39.130 0.00 0.00 0.00 3.60
2529 3186 6.042143 TGAACTCTGAAGCAAAATTGGAAAC 58.958 36.000 0.00 0.00 0.00 2.78
2530 3187 6.096705 TCTGAACTCTGAAGCAAAATTGGAAA 59.903 34.615 0.00 0.00 0.00 3.13
2531 3188 5.593909 TCTGAACTCTGAAGCAAAATTGGAA 59.406 36.000 0.00 0.00 0.00 3.53
2532 3189 5.009010 GTCTGAACTCTGAAGCAAAATTGGA 59.991 40.000 0.00 0.00 0.00 3.53
2533 3190 5.009410 AGTCTGAACTCTGAAGCAAAATTGG 59.991 40.000 0.00 0.00 0.00 3.16
2534 3191 6.069684 AGTCTGAACTCTGAAGCAAAATTG 57.930 37.500 0.00 0.00 0.00 2.32
2535 3192 6.995091 ACTAGTCTGAACTCTGAAGCAAAATT 59.005 34.615 0.00 0.00 36.92 1.82
2536 3193 6.426328 CACTAGTCTGAACTCTGAAGCAAAAT 59.574 38.462 0.00 0.00 36.92 1.82
2537 3194 5.755375 CACTAGTCTGAACTCTGAAGCAAAA 59.245 40.000 0.00 0.00 36.92 2.44
2538 3195 5.163405 ACACTAGTCTGAACTCTGAAGCAAA 60.163 40.000 0.00 0.00 36.92 3.68
2539 3196 4.342378 ACACTAGTCTGAACTCTGAAGCAA 59.658 41.667 0.00 0.00 36.92 3.91
2540 3197 3.891977 ACACTAGTCTGAACTCTGAAGCA 59.108 43.478 0.00 0.00 36.92 3.91
2541 3198 4.513198 ACACTAGTCTGAACTCTGAAGC 57.487 45.455 0.00 0.00 36.92 3.86
2542 3199 7.540400 CACATTACACTAGTCTGAACTCTGAAG 59.460 40.741 0.00 0.00 36.92 3.02
2543 3200 7.230712 TCACATTACACTAGTCTGAACTCTGAA 59.769 37.037 0.00 0.00 36.92 3.02
2544 3201 6.715264 TCACATTACACTAGTCTGAACTCTGA 59.285 38.462 0.00 0.00 36.92 3.27
2545 3202 6.914259 TCACATTACACTAGTCTGAACTCTG 58.086 40.000 0.00 0.00 36.92 3.35
2546 3203 7.710676 ATCACATTACACTAGTCTGAACTCT 57.289 36.000 0.00 0.00 36.92 3.24
2547 3204 7.489757 GGAATCACATTACACTAGTCTGAACTC 59.510 40.741 0.00 0.00 36.92 3.01
2548 3205 7.039011 TGGAATCACATTACACTAGTCTGAACT 60.039 37.037 0.00 0.00 39.66 3.01
2549 3206 7.097192 TGGAATCACATTACACTAGTCTGAAC 58.903 38.462 0.00 0.00 0.00 3.18
2550 3207 7.239763 TGGAATCACATTACACTAGTCTGAA 57.760 36.000 0.00 0.00 0.00 3.02
2551 3208 6.850752 TGGAATCACATTACACTAGTCTGA 57.149 37.500 0.00 0.00 0.00 3.27
2552 3209 8.498054 AATTGGAATCACATTACACTAGTCTG 57.502 34.615 0.00 0.00 31.51 3.51
2555 3212 8.893727 GCTAAATTGGAATCACATTACACTAGT 58.106 33.333 0.00 0.00 31.51 2.57
2556 3213 9.113838 AGCTAAATTGGAATCACATTACACTAG 57.886 33.333 0.00 0.00 31.51 2.57
2557 3214 9.461312 AAGCTAAATTGGAATCACATTACACTA 57.539 29.630 0.00 0.00 31.51 2.74
2558 3215 7.944729 AGCTAAATTGGAATCACATTACACT 57.055 32.000 0.00 0.00 31.51 3.55
2559 3216 8.243426 TGAAGCTAAATTGGAATCACATTACAC 58.757 33.333 0.00 0.00 31.51 2.90
2560 3217 8.347004 TGAAGCTAAATTGGAATCACATTACA 57.653 30.769 0.00 0.00 0.00 2.41
2561 3218 8.677300 TCTGAAGCTAAATTGGAATCACATTAC 58.323 33.333 0.00 0.00 0.00 1.89
2562 3219 8.677300 GTCTGAAGCTAAATTGGAATCACATTA 58.323 33.333 0.00 0.00 0.00 1.90
2563 3220 7.395489 AGTCTGAAGCTAAATTGGAATCACATT 59.605 33.333 0.00 0.00 0.00 2.71
2564 3221 6.888632 AGTCTGAAGCTAAATTGGAATCACAT 59.111 34.615 0.00 0.00 0.00 3.21
2565 3222 6.240894 AGTCTGAAGCTAAATTGGAATCACA 58.759 36.000 0.00 0.00 0.00 3.58
2566 3223 6.749923 AGTCTGAAGCTAAATTGGAATCAC 57.250 37.500 0.00 0.00 0.00 3.06
2567 3224 7.550551 CACTAGTCTGAAGCTAAATTGGAATCA 59.449 37.037 0.00 0.00 0.00 2.57
2568 3225 7.766278 TCACTAGTCTGAAGCTAAATTGGAATC 59.234 37.037 0.00 0.00 0.00 2.52
2569 3226 7.624549 TCACTAGTCTGAAGCTAAATTGGAAT 58.375 34.615 0.00 0.00 0.00 3.01
2570 3227 7.004555 TCACTAGTCTGAAGCTAAATTGGAA 57.995 36.000 0.00 0.00 0.00 3.53
2571 3228 6.605471 TCACTAGTCTGAAGCTAAATTGGA 57.395 37.500 0.00 0.00 0.00 3.53
2572 3229 7.672983 TTTCACTAGTCTGAAGCTAAATTGG 57.327 36.000 0.00 0.00 31.76 3.16
2573 3230 8.725148 ACATTTCACTAGTCTGAAGCTAAATTG 58.275 33.333 0.00 0.00 31.76 2.32
2574 3231 8.725148 CACATTTCACTAGTCTGAAGCTAAATT 58.275 33.333 0.00 0.00 31.76 1.82
2575 3232 8.097038 TCACATTTCACTAGTCTGAAGCTAAAT 58.903 33.333 0.00 0.00 31.76 1.40
2576 3233 7.441836 TCACATTTCACTAGTCTGAAGCTAAA 58.558 34.615 0.00 0.00 31.76 1.85
2577 3234 6.993079 TCACATTTCACTAGTCTGAAGCTAA 58.007 36.000 0.00 0.00 31.76 3.09
2578 3235 6.590234 TCACATTTCACTAGTCTGAAGCTA 57.410 37.500 0.00 0.00 31.76 3.32
2579 3236 5.474578 TCACATTTCACTAGTCTGAAGCT 57.525 39.130 0.00 0.00 31.76 3.74
2580 3237 6.593382 AGAATCACATTTCACTAGTCTGAAGC 59.407 38.462 0.00 0.00 31.76 3.86
2581 3238 9.299963 CTAGAATCACATTTCACTAGTCTGAAG 57.700 37.037 0.00 0.00 31.76 3.02
2582 3239 8.807118 ACTAGAATCACATTTCACTAGTCTGAA 58.193 33.333 0.00 0.00 36.79 3.02
2583 3240 8.354711 ACTAGAATCACATTTCACTAGTCTGA 57.645 34.615 0.00 0.00 36.79 3.27
2584 3241 8.994429 AACTAGAATCACATTTCACTAGTCTG 57.006 34.615 0.00 0.00 39.29 3.51
2587 3244 8.507249 GCAAAACTAGAATCACATTTCACTAGT 58.493 33.333 0.00 0.00 41.07 2.57
2588 3245 8.725148 AGCAAAACTAGAATCACATTTCACTAG 58.275 33.333 0.00 0.00 35.11 2.57
2589 3246 8.621532 AGCAAAACTAGAATCACATTTCACTA 57.378 30.769 0.00 0.00 0.00 2.74
2590 3247 7.308830 GGAGCAAAACTAGAATCACATTTCACT 60.309 37.037 0.00 0.00 0.00 3.41
2594 3251 6.716628 TCTGGAGCAAAACTAGAATCACATTT 59.283 34.615 0.00 0.00 0.00 2.32
2607 3264 5.701290 ACATTACACTAGTCTGGAGCAAAAC 59.299 40.000 0.00 0.00 0.00 2.43
2615 3272 9.825972 CAAAAATTACACATTACACTAGTCTGG 57.174 33.333 0.00 0.00 0.00 3.86
2636 3293 8.753175 GCCACGTATAAACAATTACAACAAAAA 58.247 29.630 0.00 0.00 0.00 1.94
2638 3295 6.577800 CGCCACGTATAAACAATTACAACAAA 59.422 34.615 0.00 0.00 0.00 2.83
2649 3306 3.033114 CGTCCGCCACGTATAAACA 57.967 52.632 0.00 0.00 44.07 2.83
2659 3316 0.321210 ATGAACACATTCGTCCGCCA 60.321 50.000 0.00 0.00 37.69 5.69
2664 3321 6.291112 CGTCAGTATACATGAACACATTCGTC 60.291 42.308 5.50 0.00 37.69 4.20
2666 3323 5.741982 TCGTCAGTATACATGAACACATTCG 59.258 40.000 5.50 4.80 37.69 3.34
2711 3368 7.510549 TGAATCTGTTCCCTAAAGTTGAAAG 57.489 36.000 0.00 0.00 33.26 2.62
2717 3374 4.917906 AGCTGAATCTGTTCCCTAAAGT 57.082 40.909 0.00 0.00 33.26 2.66
2772 3587 3.272574 TCTGATGAATCTGGCCTTGTC 57.727 47.619 3.32 0.00 0.00 3.18
2782 3597 3.134458 GGGTCGTTGGATCTGATGAATC 58.866 50.000 0.00 0.00 0.00 2.52
2793 3608 3.948719 GCAGGTGGGGTCGTTGGA 61.949 66.667 0.00 0.00 0.00 3.53
2805 3620 2.563179 TCGCTTTCTAAGAAGAGCAGGT 59.437 45.455 4.24 0.00 31.96 4.00
2809 3624 5.726413 GCTGAATTCGCTTTCTAAGAAGAGC 60.726 44.000 12.90 2.83 31.96 4.09
2818 3633 2.673368 CCGTTAGCTGAATTCGCTTTCT 59.327 45.455 23.18 9.14 38.86 2.52
2821 3636 0.727398 GCCGTTAGCTGAATTCGCTT 59.273 50.000 23.18 12.00 38.86 4.68
2833 3648 3.248602 GCCACTTTAGATGATGCCGTTAG 59.751 47.826 0.00 0.00 0.00 2.34
2839 3654 4.132336 TGATCTGCCACTTTAGATGATGC 58.868 43.478 0.00 0.00 33.97 3.91
2850 3665 5.714333 CAGTAGGTATATCTGATCTGCCACT 59.286 44.000 11.62 9.73 0.00 4.00
2866 3681 2.242965 TGGTAGCAGTAGCCAGTAGGTA 59.757 50.000 0.00 0.00 43.56 3.08
2867 3682 1.006758 TGGTAGCAGTAGCCAGTAGGT 59.993 52.381 0.00 0.00 43.56 3.08
2868 3683 1.409427 GTGGTAGCAGTAGCCAGTAGG 59.591 57.143 0.00 0.00 43.56 3.18
2869 3684 2.359531 GAGTGGTAGCAGTAGCCAGTAG 59.640 54.545 1.39 0.00 43.56 2.57
2870 3685 2.376109 GAGTGGTAGCAGTAGCCAGTA 58.624 52.381 1.39 0.00 43.56 2.74
2871 3686 1.187087 GAGTGGTAGCAGTAGCCAGT 58.813 55.000 1.39 0.00 43.56 4.00
2872 3687 0.461961 GGAGTGGTAGCAGTAGCCAG 59.538 60.000 1.39 0.00 43.56 4.85
2873 3688 0.252057 TGGAGTGGTAGCAGTAGCCA 60.252 55.000 1.39 4.20 43.56 4.75
2874 3689 0.175989 GTGGAGTGGTAGCAGTAGCC 59.824 60.000 1.39 1.41 43.56 3.93
2875 3690 0.895530 TGTGGAGTGGTAGCAGTAGC 59.104 55.000 1.39 0.00 42.56 3.58
2876 3691 2.094494 CAGTGTGGAGTGGTAGCAGTAG 60.094 54.545 1.39 0.00 0.00 2.57
2877 3692 1.893137 CAGTGTGGAGTGGTAGCAGTA 59.107 52.381 1.39 0.00 0.00 2.74
2878 3693 0.681733 CAGTGTGGAGTGGTAGCAGT 59.318 55.000 0.88 0.88 0.00 4.40
2879 3694 0.681733 ACAGTGTGGAGTGGTAGCAG 59.318 55.000 0.00 0.00 0.00 4.24
2880 3695 0.679505 GACAGTGTGGAGTGGTAGCA 59.320 55.000 0.00 0.00 0.00 3.49
2881 3696 0.679505 TGACAGTGTGGAGTGGTAGC 59.320 55.000 0.00 0.00 0.00 3.58
2882 3697 1.000955 GGTGACAGTGTGGAGTGGTAG 59.999 57.143 0.00 0.00 0.00 3.18
2883 3698 1.045407 GGTGACAGTGTGGAGTGGTA 58.955 55.000 0.00 0.00 0.00 3.25
2884 3699 0.980754 TGGTGACAGTGTGGAGTGGT 60.981 55.000 0.00 0.00 35.01 4.16
2885 3700 1.829456 TGGTGACAGTGTGGAGTGG 59.171 57.895 0.00 0.00 35.01 4.00
2897 3712 1.166129 TACTGAGACGAGCTGGTGAC 58.834 55.000 5.94 0.38 0.00 3.67
2913 3728 2.158608 AGTTTCTGCAAGCCACCTTACT 60.159 45.455 0.00 0.00 0.00 2.24
2923 3738 3.781079 TGTTGGTTCAGTTTCTGCAAG 57.219 42.857 0.00 0.00 0.00 4.01
2926 3741 2.687935 TCCTTGTTGGTTCAGTTTCTGC 59.312 45.455 0.00 0.00 37.07 4.26
2927 3742 3.316308 CCTCCTTGTTGGTTCAGTTTCTG 59.684 47.826 0.00 0.00 37.07 3.02
2928 3743 3.053619 ACCTCCTTGTTGGTTCAGTTTCT 60.054 43.478 0.00 0.00 37.07 2.52
2967 3785 9.654663 ACATAGATTTCAGTTTCTTGGTAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
2982 3800 3.865164 CAGCTGCACGTACATAGATTTCA 59.135 43.478 0.00 0.00 0.00 2.69
2986 3804 1.858091 GCAGCTGCACGTACATAGAT 58.142 50.000 33.36 0.00 41.59 1.98
3005 3823 3.554692 GATCCAAGCGTCGCCGTG 61.555 66.667 14.86 12.45 36.15 4.94
3006 3824 3.583276 TTGATCCAAGCGTCGCCGT 62.583 57.895 14.86 0.00 36.15 5.68
3007 3825 2.802667 CTTGATCCAAGCGTCGCCG 61.803 63.158 14.86 5.35 34.63 6.46
3008 3826 2.464459 CCTTGATCCAAGCGTCGCC 61.464 63.158 14.86 0.00 39.85 5.54
3009 3827 1.424493 CTCCTTGATCCAAGCGTCGC 61.424 60.000 9.80 9.80 39.85 5.19
3010 3828 0.108615 ACTCCTTGATCCAAGCGTCG 60.109 55.000 1.39 0.00 39.85 5.12
3011 3829 1.205893 AGACTCCTTGATCCAAGCGTC 59.794 52.381 14.11 14.11 39.85 5.19
3012 3830 1.066573 CAGACTCCTTGATCCAAGCGT 60.067 52.381 1.39 1.43 39.85 5.07
3013 3831 1.205655 TCAGACTCCTTGATCCAAGCG 59.794 52.381 1.39 0.00 39.85 4.68
3014 3832 3.118482 TGATCAGACTCCTTGATCCAAGC 60.118 47.826 11.46 0.00 39.85 4.01
3015 3833 4.405036 TCTGATCAGACTCCTTGATCCAAG 59.595 45.833 21.67 0.00 38.05 3.61
3016 3834 4.356436 TCTGATCAGACTCCTTGATCCAA 58.644 43.478 21.67 0.00 38.05 3.53
3017 3835 3.986435 TCTGATCAGACTCCTTGATCCA 58.014 45.455 21.67 0.00 38.05 3.41
3018 3836 4.588106 TGATCTGATCAGACTCCTTGATCC 59.412 45.833 27.37 7.36 40.75 3.36
3019 3837 5.787953 TGATCTGATCAGACTCCTTGATC 57.212 43.478 27.37 17.71 40.75 2.92
3031 3849 3.626217 GCAACTGCAATCTGATCTGATCA 59.374 43.478 18.61 18.61 41.59 2.92
3032 3850 3.303197 CGCAACTGCAATCTGATCTGATC 60.303 47.826 14.69 10.72 42.21 2.92
3033 3851 2.612672 CGCAACTGCAATCTGATCTGAT 59.387 45.455 9.15 9.15 42.21 2.90
3034 3852 2.004733 CGCAACTGCAATCTGATCTGA 58.995 47.619 4.63 4.63 42.21 3.27
3035 3853 2.004733 TCGCAACTGCAATCTGATCTG 58.995 47.619 2.12 0.00 42.21 2.90
3036 3854 2.391616 TCGCAACTGCAATCTGATCT 57.608 45.000 2.12 0.00 42.21 2.75
3037 3855 3.687572 AATCGCAACTGCAATCTGATC 57.312 42.857 2.12 0.00 42.21 2.92
3038 3856 3.940852 TGTAATCGCAACTGCAATCTGAT 59.059 39.130 2.12 0.00 42.21 2.90
3039 3857 3.333804 TGTAATCGCAACTGCAATCTGA 58.666 40.909 2.12 0.00 42.21 3.27
3040 3858 3.745332 TGTAATCGCAACTGCAATCTG 57.255 42.857 2.12 0.00 42.21 2.90
3041 3859 4.002982 TCTTGTAATCGCAACTGCAATCT 58.997 39.130 2.12 0.00 42.21 2.40
3042 3860 4.091424 GTCTTGTAATCGCAACTGCAATC 58.909 43.478 2.12 0.00 42.21 2.67
3043 3861 3.501828 TGTCTTGTAATCGCAACTGCAAT 59.498 39.130 2.12 0.00 42.21 3.56
3044 3862 2.875317 TGTCTTGTAATCGCAACTGCAA 59.125 40.909 2.12 0.00 42.21 4.08
3054 3872 6.255887 CCTTGATCTAACCGTGTCTTGTAATC 59.744 42.308 0.00 0.00 0.00 1.75
3068 3886 5.128008 ACCTAAGCAGACTCCTTGATCTAAC 59.872 44.000 0.00 0.00 0.00 2.34
3072 3890 3.791245 CACCTAAGCAGACTCCTTGATC 58.209 50.000 0.00 0.00 0.00 2.92
3110 3928 1.207089 CAGGGTCGCCAAATCTACTGA 59.793 52.381 0.00 0.00 0.00 3.41
3126 3944 2.670934 GGACTGCACAGCACAGGG 60.671 66.667 0.00 0.00 39.55 4.45
3127 3945 1.964891 CAGGACTGCACAGCACAGG 60.965 63.158 0.00 0.00 39.55 4.00
3128 3946 3.651645 CAGGACTGCACAGCACAG 58.348 61.111 0.00 0.00 41.08 3.66
3150 3968 3.765894 TTCCCCCATACGCGCCATG 62.766 63.158 5.73 10.40 0.00 3.66
3151 3969 3.476031 CTTCCCCCATACGCGCCAT 62.476 63.158 5.73 0.00 0.00 4.40
3152 3970 4.169696 CTTCCCCCATACGCGCCA 62.170 66.667 5.73 0.00 0.00 5.69
3153 3971 3.394635 TTCTTCCCCCATACGCGCC 62.395 63.158 5.73 0.00 0.00 6.53
3154 3972 1.887707 CTTCTTCCCCCATACGCGC 60.888 63.158 5.73 0.00 0.00 6.86
3155 3973 1.227556 CCTTCTTCCCCCATACGCG 60.228 63.158 3.53 3.53 0.00 6.01
3156 3974 1.148498 CCCTTCTTCCCCCATACGC 59.852 63.158 0.00 0.00 0.00 4.42
3157 3975 0.693092 TCCCCTTCTTCCCCCATACG 60.693 60.000 0.00 0.00 0.00 3.06
3158 3976 1.603634 TTCCCCTTCTTCCCCCATAC 58.396 55.000 0.00 0.00 0.00 2.39
3159 3977 2.143602 CATTCCCCTTCTTCCCCCATA 58.856 52.381 0.00 0.00 0.00 2.74
3160 3978 0.936691 CATTCCCCTTCTTCCCCCAT 59.063 55.000 0.00 0.00 0.00 4.00
3161 3979 1.221213 CCATTCCCCTTCTTCCCCCA 61.221 60.000 0.00 0.00 0.00 4.96
3162 3980 1.620818 CCATTCCCCTTCTTCCCCC 59.379 63.158 0.00 0.00 0.00 5.40
3163 3981 1.620818 CCCATTCCCCTTCTTCCCC 59.379 63.158 0.00 0.00 0.00 4.81
3164 3982 1.620818 CCCCATTCCCCTTCTTCCC 59.379 63.158 0.00 0.00 0.00 3.97
3165 3983 1.221909 ACCCCCATTCCCCTTCTTCC 61.222 60.000 0.00 0.00 0.00 3.46
3166 3984 0.033109 CACCCCCATTCCCCTTCTTC 60.033 60.000 0.00 0.00 0.00 2.87
3167 3985 1.518431 CCACCCCCATTCCCCTTCTT 61.518 60.000 0.00 0.00 0.00 2.52
3168 3986 1.935931 CCACCCCCATTCCCCTTCT 60.936 63.158 0.00 0.00 0.00 2.85
3169 3987 1.933812 TCCACCCCCATTCCCCTTC 60.934 63.158 0.00 0.00 0.00 3.46
3170 3988 2.215758 TCCACCCCCATTCCCCTT 59.784 61.111 0.00 0.00 0.00 3.95
3171 3989 2.617215 GTCCACCCCCATTCCCCT 60.617 66.667 0.00 0.00 0.00 4.79
3172 3990 2.617215 AGTCCACCCCCATTCCCC 60.617 66.667 0.00 0.00 0.00 4.81
3173 3991 2.683475 CAGTCCACCCCCATTCCC 59.317 66.667 0.00 0.00 0.00 3.97
3174 3992 2.211468 GACCAGTCCACCCCCATTCC 62.211 65.000 0.00 0.00 0.00 3.01
3175 3993 1.303282 GACCAGTCCACCCCCATTC 59.697 63.158 0.00 0.00 0.00 2.67
3176 3994 2.602676 CGACCAGTCCACCCCCATT 61.603 63.158 0.00 0.00 0.00 3.16
3177 3995 3.009115 CGACCAGTCCACCCCCAT 61.009 66.667 0.00 0.00 0.00 4.00
3180 3998 4.394712 CAGCGACCAGTCCACCCC 62.395 72.222 0.00 0.00 0.00 4.95
3181 3999 3.311110 TCAGCGACCAGTCCACCC 61.311 66.667 0.00 0.00 0.00 4.61
3182 4000 2.048127 GTCAGCGACCAGTCCACC 60.048 66.667 0.00 0.00 0.00 4.61
3183 4001 2.430921 CGTCAGCGACCAGTCCAC 60.431 66.667 0.00 0.00 41.33 4.02
3184 4002 2.596338 TCGTCAGCGACCAGTCCA 60.596 61.111 0.00 0.00 42.81 4.02
3205 4023 3.923782 TAACTTTTCCCGCGGGGCC 62.924 63.158 42.36 0.00 43.94 5.80
3206 4024 1.525718 TTTAACTTTTCCCGCGGGGC 61.526 55.000 42.36 0.00 43.94 5.80
3207 4025 0.960286 TTTTAACTTTTCCCGCGGGG 59.040 50.000 42.36 28.70 46.11 5.73
3208 4026 1.610038 ACTTTTAACTTTTCCCGCGGG 59.390 47.619 39.13 39.13 0.00 6.13
3209 4027 2.551032 AGACTTTTAACTTTTCCCGCGG 59.449 45.455 21.04 21.04 0.00 6.46
3210 4028 3.891056 AGACTTTTAACTTTTCCCGCG 57.109 42.857 0.00 0.00 0.00 6.46
3211 4029 6.755141 AGAAAAAGACTTTTAACTTTTCCCGC 59.245 34.615 13.45 0.00 42.80 6.13
3212 4030 8.697846 AAGAAAAAGACTTTTAACTTTTCCCG 57.302 30.769 13.45 0.00 42.80 5.14
3235 4053 3.664025 CACCGCTTTTCTTTCGCTTAAAG 59.336 43.478 2.80 2.80 45.13 1.85
3236 4054 3.065648 ACACCGCTTTTCTTTCGCTTAAA 59.934 39.130 0.00 0.00 0.00 1.52
3237 4055 2.614983 ACACCGCTTTTCTTTCGCTTAA 59.385 40.909 0.00 0.00 0.00 1.85
3238 4056 2.032377 CACACCGCTTTTCTTTCGCTTA 60.032 45.455 0.00 0.00 0.00 3.09
3239 4057 1.021968 ACACCGCTTTTCTTTCGCTT 58.978 45.000 0.00 0.00 0.00 4.68
3240 4058 0.307760 CACACCGCTTTTCTTTCGCT 59.692 50.000 0.00 0.00 0.00 4.93
3241 4059 1.268778 GCACACCGCTTTTCTTTCGC 61.269 55.000 0.00 0.00 37.77 4.70
3242 4060 0.660300 GGCACACCGCTTTTCTTTCG 60.660 55.000 0.00 0.00 41.91 3.46
3243 4061 0.318699 GGGCACACCGCTTTTCTTTC 60.319 55.000 0.00 0.00 41.91 2.62
3244 4062 1.739667 GGGCACACCGCTTTTCTTT 59.260 52.632 0.00 0.00 41.91 2.52
3245 4063 2.200337 GGGGCACACCGCTTTTCTT 61.200 57.895 0.00 0.00 45.36 2.52
3246 4064 2.597510 GGGGCACACCGCTTTTCT 60.598 61.111 0.00 0.00 45.36 2.52
3254 4072 3.721706 CTCTCCAGGGGGCACACC 61.722 72.222 0.00 0.00 39.11 4.16
3255 4073 4.416738 GCTCTCCAGGGGGCACAC 62.417 72.222 0.00 0.00 0.00 3.82
3256 4074 4.664267 AGCTCTCCAGGGGGCACA 62.664 66.667 0.00 0.00 0.00 4.57
3257 4075 3.791586 GAGCTCTCCAGGGGGCAC 61.792 72.222 6.43 0.00 0.00 5.01
3267 4085 1.028905 AGCGTCACATAGGAGCTCTC 58.971 55.000 14.64 3.76 31.94 3.20
3268 4086 3.199290 AGCGTCACATAGGAGCTCT 57.801 52.632 14.64 2.18 31.94 4.09
3269 4087 3.560826 GAGCGTCACATAGGAGCTC 57.439 57.895 4.71 4.71 45.74 4.09
3270 4088 1.028905 GAGAGCGTCACATAGGAGCT 58.971 55.000 0.00 0.00 41.29 4.09
3271 4089 1.028905 AGAGAGCGTCACATAGGAGC 58.971 55.000 0.00 0.00 0.00 4.70
3272 4090 1.268999 GCAGAGAGCGTCACATAGGAG 60.269 57.143 0.00 0.00 0.00 3.69
3273 4091 0.741326 GCAGAGAGCGTCACATAGGA 59.259 55.000 0.00 0.00 0.00 2.94
3274 4092 3.264666 GCAGAGAGCGTCACATAGG 57.735 57.895 0.00 0.00 0.00 2.57
3291 4109 2.938539 ATCGCTCGACTGCTTACCGC 62.939 60.000 0.00 0.00 39.77 5.68
3292 4110 0.930742 GATCGCTCGACTGCTTACCG 60.931 60.000 0.00 0.00 0.00 4.02
3293 4111 2.874709 GATCGCTCGACTGCTTACC 58.125 57.895 0.00 0.00 0.00 2.85
3304 4122 0.179124 GATCCCCTATGCGATCGCTC 60.179 60.000 37.01 21.50 42.51 5.03
3305 4123 1.893786 GATCCCCTATGCGATCGCT 59.106 57.895 37.01 25.15 42.51 4.93
3306 4124 4.504132 GATCCCCTATGCGATCGC 57.496 61.111 32.48 32.48 42.35 4.58
3308 4126 1.403679 CTCTCGATCCCCTATGCGATC 59.596 57.143 0.00 0.00 33.06 3.69
3309 4127 1.004862 TCTCTCGATCCCCTATGCGAT 59.995 52.381 0.00 0.00 31.87 4.58
3310 4128 0.400594 TCTCTCGATCCCCTATGCGA 59.599 55.000 0.00 0.00 0.00 5.10
3311 4129 1.403679 GATCTCTCGATCCCCTATGCG 59.596 57.143 0.00 0.00 40.14 4.73
3312 4130 2.687935 GAGATCTCTCGATCCCCTATGC 59.312 54.545 15.80 0.00 45.83 3.14
3324 4142 2.867368 TCTAGTGTTCGCGAGATCTCTC 59.133 50.000 20.26 11.86 41.60 3.20
3325 4143 2.610374 GTCTAGTGTTCGCGAGATCTCT 59.390 50.000 20.26 12.34 41.60 3.10
3326 4144 2.286536 GGTCTAGTGTTCGCGAGATCTC 60.287 54.545 13.05 13.05 41.60 2.75
3327 4145 1.671845 GGTCTAGTGTTCGCGAGATCT 59.328 52.381 9.59 11.22 41.60 2.75
3328 4146 1.671845 AGGTCTAGTGTTCGCGAGATC 59.328 52.381 9.59 1.94 41.60 2.75
3329 4147 1.671845 GAGGTCTAGTGTTCGCGAGAT 59.328 52.381 9.59 0.00 41.60 2.75
3330 4148 1.085091 GAGGTCTAGTGTTCGCGAGA 58.915 55.000 9.59 0.00 39.20 4.04
3331 4149 0.099082 GGAGGTCTAGTGTTCGCGAG 59.901 60.000 9.59 0.00 0.00 5.03
3332 4150 0.322277 AGGAGGTCTAGTGTTCGCGA 60.322 55.000 3.71 3.71 0.00 5.87
3333 4151 0.179161 CAGGAGGTCTAGTGTTCGCG 60.179 60.000 0.00 0.00 0.00 5.87
3334 4152 0.458716 GCAGGAGGTCTAGTGTTCGC 60.459 60.000 0.00 0.00 0.00 4.70
3335 4153 1.178276 AGCAGGAGGTCTAGTGTTCG 58.822 55.000 0.00 0.00 0.00 3.95
3336 4154 2.093921 GGAAGCAGGAGGTCTAGTGTTC 60.094 54.545 0.00 0.00 0.00 3.18
3337 4155 1.903183 GGAAGCAGGAGGTCTAGTGTT 59.097 52.381 0.00 0.00 0.00 3.32
3338 4156 1.562783 GGAAGCAGGAGGTCTAGTGT 58.437 55.000 0.00 0.00 0.00 3.55
3339 4157 0.457851 CGGAAGCAGGAGGTCTAGTG 59.542 60.000 0.00 0.00 0.00 2.74
3340 4158 0.331954 TCGGAAGCAGGAGGTCTAGT 59.668 55.000 0.00 0.00 0.00 2.57
3341 4159 1.028905 CTCGGAAGCAGGAGGTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
3342 4160 3.192799 CTCGGAAGCAGGAGGTCTA 57.807 57.895 0.00 0.00 0.00 2.59
3343 4161 4.026300 CTCGGAAGCAGGAGGTCT 57.974 61.111 0.00 0.00 0.00 3.85
3354 4172 0.949105 GTTCGCTTCCTTGCTCGGAA 60.949 55.000 7.02 7.02 40.64 4.30
3355 4173 1.374252 GTTCGCTTCCTTGCTCGGA 60.374 57.895 0.00 0.00 0.00 4.55
3356 4174 2.391389 GGTTCGCTTCCTTGCTCGG 61.391 63.158 0.00 0.00 0.00 4.63
3357 4175 1.227999 TTGGTTCGCTTCCTTGCTCG 61.228 55.000 0.00 0.00 0.00 5.03
3358 4176 1.168714 ATTGGTTCGCTTCCTTGCTC 58.831 50.000 0.00 0.00 0.00 4.26
3359 4177 1.270550 CAATTGGTTCGCTTCCTTGCT 59.729 47.619 0.00 0.00 0.00 3.91
3360 4178 1.269448 TCAATTGGTTCGCTTCCTTGC 59.731 47.619 5.42 0.00 0.00 4.01
3361 4179 2.669391 GCTCAATTGGTTCGCTTCCTTG 60.669 50.000 5.42 0.00 0.00 3.61
3362 4180 1.541588 GCTCAATTGGTTCGCTTCCTT 59.458 47.619 5.42 0.00 0.00 3.36
3363 4181 1.168714 GCTCAATTGGTTCGCTTCCT 58.831 50.000 5.42 0.00 0.00 3.36
3364 4182 1.168714 AGCTCAATTGGTTCGCTTCC 58.831 50.000 5.42 0.00 0.00 3.46
3365 4183 2.223135 GCTAGCTCAATTGGTTCGCTTC 60.223 50.000 7.70 2.12 32.49 3.86
3366 4184 1.740025 GCTAGCTCAATTGGTTCGCTT 59.260 47.619 7.70 0.00 32.49 4.68
3367 4185 1.065854 AGCTAGCTCAATTGGTTCGCT 60.066 47.619 12.68 10.85 34.88 4.93
3368 4186 1.373570 AGCTAGCTCAATTGGTTCGC 58.626 50.000 12.68 3.94 0.00 4.70
3369 4187 2.541762 GCTAGCTAGCTCAATTGGTTCG 59.458 50.000 33.71 0.56 45.62 3.95
3382 4200 5.900425 TCTGTGATCAAGAAAGCTAGCTAG 58.100 41.667 19.70 16.84 0.00 3.42
3383 4201 5.921962 TCTGTGATCAAGAAAGCTAGCTA 57.078 39.130 19.70 0.40 0.00 3.32
3384 4202 4.815533 TCTGTGATCAAGAAAGCTAGCT 57.184 40.909 12.68 12.68 0.00 3.32
3385 4203 4.692625 TGTTCTGTGATCAAGAAAGCTAGC 59.307 41.667 6.62 6.62 0.00 3.42
3386 4204 6.981762 ATGTTCTGTGATCAAGAAAGCTAG 57.018 37.500 16.73 0.00 0.00 3.42
3387 4205 6.348786 GCAATGTTCTGTGATCAAGAAAGCTA 60.349 38.462 16.73 8.51 0.00 3.32
3388 4206 5.564259 GCAATGTTCTGTGATCAAGAAAGCT 60.564 40.000 16.73 6.84 0.00 3.74
3389 4207 4.620184 GCAATGTTCTGTGATCAAGAAAGC 59.380 41.667 16.73 14.72 0.00 3.51
3390 4208 5.765176 TGCAATGTTCTGTGATCAAGAAAG 58.235 37.500 16.73 5.98 0.00 2.62
3391 4209 5.771153 TGCAATGTTCTGTGATCAAGAAA 57.229 34.783 16.73 10.69 0.00 2.52
3392 4210 5.771153 TTGCAATGTTCTGTGATCAAGAA 57.229 34.783 13.14 13.14 0.00 2.52
3393 4211 5.771153 TTTGCAATGTTCTGTGATCAAGA 57.229 34.783 0.00 0.00 0.00 3.02
3394 4212 5.176223 GGTTTTGCAATGTTCTGTGATCAAG 59.824 40.000 0.00 0.00 0.00 3.02
3395 4213 5.049167 GGTTTTGCAATGTTCTGTGATCAA 58.951 37.500 0.00 0.00 0.00 2.57
3396 4214 4.341806 AGGTTTTGCAATGTTCTGTGATCA 59.658 37.500 0.00 0.00 0.00 2.92
3397 4215 4.874970 AGGTTTTGCAATGTTCTGTGATC 58.125 39.130 0.00 0.00 0.00 2.92
3398 4216 4.942761 AGGTTTTGCAATGTTCTGTGAT 57.057 36.364 0.00 0.00 0.00 3.06
3399 4217 4.734398 AAGGTTTTGCAATGTTCTGTGA 57.266 36.364 0.00 0.00 0.00 3.58
3400 4218 6.272318 TCTTAAGGTTTTGCAATGTTCTGTG 58.728 36.000 0.00 0.00 0.00 3.66
3401 4219 6.463995 TCTTAAGGTTTTGCAATGTTCTGT 57.536 33.333 0.00 0.00 0.00 3.41
3402 4220 7.769272 TTTCTTAAGGTTTTGCAATGTTCTG 57.231 32.000 0.00 0.00 0.00 3.02
3403 4221 8.040727 AGTTTTCTTAAGGTTTTGCAATGTTCT 58.959 29.630 0.00 0.00 0.00 3.01
3404 4222 8.196802 AGTTTTCTTAAGGTTTTGCAATGTTC 57.803 30.769 0.00 0.00 0.00 3.18
3405 4223 7.821846 TGAGTTTTCTTAAGGTTTTGCAATGTT 59.178 29.630 0.00 0.00 0.00 2.71
3406 4224 7.327214 TGAGTTTTCTTAAGGTTTTGCAATGT 58.673 30.769 0.00 0.00 0.00 2.71
3407 4225 7.769272 TGAGTTTTCTTAAGGTTTTGCAATG 57.231 32.000 0.00 0.00 0.00 2.82
3408 4226 8.664798 GTTTGAGTTTTCTTAAGGTTTTGCAAT 58.335 29.630 0.00 0.00 0.00 3.56
3409 4227 7.148722 CGTTTGAGTTTTCTTAAGGTTTTGCAA 60.149 33.333 1.85 0.00 0.00 4.08
3410 4228 6.309251 CGTTTGAGTTTTCTTAAGGTTTTGCA 59.691 34.615 1.85 0.00 0.00 4.08
3411 4229 6.692392 CGTTTGAGTTTTCTTAAGGTTTTGC 58.308 36.000 1.85 0.00 0.00 3.68
3412 4230 6.237728 GGCGTTTGAGTTTTCTTAAGGTTTTG 60.238 38.462 1.85 0.00 0.00 2.44
3413 4231 5.808540 GGCGTTTGAGTTTTCTTAAGGTTTT 59.191 36.000 1.85 0.00 0.00 2.43
3414 4232 5.345702 GGCGTTTGAGTTTTCTTAAGGTTT 58.654 37.500 1.85 0.00 0.00 3.27
3415 4233 4.496840 CGGCGTTTGAGTTTTCTTAAGGTT 60.497 41.667 1.85 0.00 0.00 3.50
3416 4234 3.002965 CGGCGTTTGAGTTTTCTTAAGGT 59.997 43.478 1.85 0.00 0.00 3.50
3417 4235 3.249080 TCGGCGTTTGAGTTTTCTTAAGG 59.751 43.478 6.85 0.00 0.00 2.69
3418 4236 4.461992 TCGGCGTTTGAGTTTTCTTAAG 57.538 40.909 6.85 0.00 0.00 1.85
3419 4237 4.083696 GGATCGGCGTTTGAGTTTTCTTAA 60.084 41.667 6.85 0.00 0.00 1.85
3420 4238 3.434299 GGATCGGCGTTTGAGTTTTCTTA 59.566 43.478 6.85 0.00 0.00 2.10
3421 4239 2.225727 GGATCGGCGTTTGAGTTTTCTT 59.774 45.455 6.85 0.00 0.00 2.52
3422 4240 1.804748 GGATCGGCGTTTGAGTTTTCT 59.195 47.619 6.85 0.00 0.00 2.52
3423 4241 1.463528 CGGATCGGCGTTTGAGTTTTC 60.464 52.381 6.85 0.00 0.00 2.29
3424 4242 0.515564 CGGATCGGCGTTTGAGTTTT 59.484 50.000 6.85 0.00 0.00 2.43
3425 4243 0.320073 TCGGATCGGCGTTTGAGTTT 60.320 50.000 6.85 0.00 0.00 2.66
3426 4244 1.012486 GTCGGATCGGCGTTTGAGTT 61.012 55.000 6.85 0.00 0.00 3.01
3427 4245 1.445582 GTCGGATCGGCGTTTGAGT 60.446 57.895 6.85 0.00 0.00 3.41
3428 4246 2.165301 GGTCGGATCGGCGTTTGAG 61.165 63.158 6.85 0.00 29.52 3.02
3429 4247 2.125832 GGTCGGATCGGCGTTTGA 60.126 61.111 6.85 0.00 29.52 2.69
3430 4248 1.366111 AATGGTCGGATCGGCGTTTG 61.366 55.000 6.85 0.00 29.52 2.93
3431 4249 0.675522 AAATGGTCGGATCGGCGTTT 60.676 50.000 6.85 0.00 29.52 3.60
3432 4250 0.675522 AAAATGGTCGGATCGGCGTT 60.676 50.000 6.85 0.00 29.52 4.84
3433 4251 0.675522 AAAAATGGTCGGATCGGCGT 60.676 50.000 6.85 0.00 29.52 5.68
3434 4252 0.027586 GAAAAATGGTCGGATCGGCG 59.972 55.000 0.00 0.00 29.52 6.46
3435 4253 1.091537 TGAAAAATGGTCGGATCGGC 58.908 50.000 0.00 0.00 0.00 5.54
3436 4254 3.840890 TTTGAAAAATGGTCGGATCGG 57.159 42.857 0.00 0.00 0.00 4.18
3437 4255 6.364706 TGAATTTTTGAAAAATGGTCGGATCG 59.635 34.615 15.79 0.00 0.00 3.69
3438 4256 7.650834 TGAATTTTTGAAAAATGGTCGGATC 57.349 32.000 15.79 8.80 0.00 3.36
3439 4257 8.341903 GTTTGAATTTTTGAAAAATGGTCGGAT 58.658 29.630 15.79 0.00 0.00 4.18
3440 4258 7.464710 CGTTTGAATTTTTGAAAAATGGTCGGA 60.465 33.333 15.79 2.82 0.00 4.55
3441 4259 6.626882 CGTTTGAATTTTTGAAAAATGGTCGG 59.373 34.615 15.79 2.43 0.00 4.79
3442 4260 6.138391 GCGTTTGAATTTTTGAAAAATGGTCG 59.862 34.615 15.79 15.39 0.00 4.79
3443 4261 6.963805 TGCGTTTGAATTTTTGAAAAATGGTC 59.036 30.769 15.79 11.28 0.00 4.02
3444 4262 6.846350 TGCGTTTGAATTTTTGAAAAATGGT 58.154 28.000 15.79 2.23 0.00 3.55
3445 4263 7.731556 TTGCGTTTGAATTTTTGAAAAATGG 57.268 28.000 15.79 4.27 0.00 3.16
3446 4264 9.445698 GTTTTGCGTTTGAATTTTTGAAAAATG 57.554 25.926 15.79 4.58 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.