Multiple sequence alignment - TraesCS2D01G017800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G017800 chr2D 100.000 2792 0 0 1 2792 8485490 8488281 0.000000e+00 5156.0
1 TraesCS2D01G017800 chr2D 90.541 74 5 2 108 180 426427084 426427012 2.290000e-16 97.1
2 TraesCS2D01G017800 chr2A 90.376 1704 68 35 590 2274 7526001 7527627 0.000000e+00 2150.0
3 TraesCS2D01G017800 chr2A 87.786 524 40 9 2271 2791 7527862 7528364 2.390000e-165 592.0
4 TraesCS2D01G017800 chr2A 86.792 106 14 0 67 172 66570439 66570544 4.890000e-23 119.0
5 TraesCS2D01G017800 chr2A 76.503 183 39 3 1 182 17123609 17123788 2.290000e-16 97.1
6 TraesCS2D01G017800 chr2B 88.423 1503 68 39 590 2063 11236700 11238125 0.000000e+00 1714.0
7 TraesCS2D01G017800 chr2B 87.238 525 34 14 2271 2792 11238429 11238923 4.040000e-158 568.0
8 TraesCS2D01G017800 chr2B 92.481 133 10 0 2139 2271 11238215 11238347 1.020000e-44 191.0
9 TraesCS2D01G017800 chr2B 92.727 55 4 0 1 55 85641965 85641911 2.310000e-11 80.5
10 TraesCS2D01G017800 chr6B 82.237 152 16 8 3 148 213235368 213235222 1.360000e-23 121.0
11 TraesCS2D01G017800 chr6B 90.909 55 5 0 1 55 502790224 502790170 1.070000e-09 75.0
12 TraesCS2D01G017800 chr6B 87.500 56 6 1 1 55 77758818 77758873 2.320000e-06 63.9
13 TraesCS2D01G017800 chr6D 83.178 107 18 0 67 173 284503806 284503700 6.360000e-17 99.0
14 TraesCS2D01G017800 chr7B 92.727 55 4 0 3 57 128772152 128772206 2.310000e-11 80.5
15 TraesCS2D01G017800 chr5D 75.141 177 29 9 2 167 482114955 482115127 4.990000e-08 69.4
16 TraesCS2D01G017800 chr5B 100.000 31 0 0 1119 1149 423363146 423363116 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G017800 chr2D 8485490 8488281 2791 False 5156.000000 5156 100.000000 1 2792 1 chr2D.!!$F1 2791
1 TraesCS2D01G017800 chr2A 7526001 7528364 2363 False 1371.000000 2150 89.081000 590 2791 2 chr2A.!!$F3 2201
2 TraesCS2D01G017800 chr2B 11236700 11238923 2223 False 824.333333 1714 89.380667 590 2792 3 chr2B.!!$F1 2202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 556 0.035881 CAGCTGACTGGCAGGAAAGA 59.964 55.0 20.34 0.0 45.03 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1866 0.319555 TACAAGCGGCAGTGAGTGAC 60.32 55.0 1.45 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.403866 AAAACTGACAATTACCATGCTTGA 57.596 33.333 0.22 0.00 0.00 3.02
75 76 5.376854 AACTGACAATTACCATGCTTGAC 57.623 39.130 0.22 0.00 0.00 3.18
76 77 4.397420 ACTGACAATTACCATGCTTGACA 58.603 39.130 0.22 0.00 0.00 3.58
77 78 4.826733 ACTGACAATTACCATGCTTGACAA 59.173 37.500 0.22 0.00 0.00 3.18
78 79 5.119931 TGACAATTACCATGCTTGACAAC 57.880 39.130 0.22 0.00 0.00 3.32
79 80 4.826733 TGACAATTACCATGCTTGACAACT 59.173 37.500 0.22 0.00 0.00 3.16
80 81 6.000840 TGACAATTACCATGCTTGACAACTA 58.999 36.000 0.22 0.00 0.00 2.24
81 82 6.488344 TGACAATTACCATGCTTGACAACTAA 59.512 34.615 0.22 0.00 0.00 2.24
82 83 7.013750 TGACAATTACCATGCTTGACAACTAAA 59.986 33.333 0.22 0.00 0.00 1.85
83 84 7.370383 ACAATTACCATGCTTGACAACTAAAG 58.630 34.615 0.22 0.00 0.00 1.85
84 85 7.014230 ACAATTACCATGCTTGACAACTAAAGT 59.986 33.333 0.22 0.00 0.00 2.66
85 86 6.952773 TTACCATGCTTGACAACTAAAGTT 57.047 33.333 0.22 0.00 39.12 2.66
136 137 3.375782 AAAAGTTCAGAGTTGCCATGC 57.624 42.857 0.00 0.00 0.00 4.06
137 138 0.877071 AAGTTCAGAGTTGCCATGCG 59.123 50.000 0.00 0.00 0.00 4.73
138 139 0.250467 AGTTCAGAGTTGCCATGCGT 60.250 50.000 0.00 0.00 0.00 5.24
139 140 0.593128 GTTCAGAGTTGCCATGCGTT 59.407 50.000 0.00 0.00 0.00 4.84
140 141 0.874390 TTCAGAGTTGCCATGCGTTC 59.126 50.000 0.00 0.00 0.00 3.95
141 142 0.250252 TCAGAGTTGCCATGCGTTCA 60.250 50.000 0.00 0.00 0.00 3.18
142 143 0.806868 CAGAGTTGCCATGCGTTCAT 59.193 50.000 0.00 0.00 0.00 2.57
144 145 0.799534 GAGTTGCCATGCGTTCATGC 60.800 55.000 0.03 0.00 46.69 4.06
145 146 1.806758 GTTGCCATGCGTTCATGCC 60.807 57.895 0.03 0.00 46.69 4.40
146 147 2.273912 TTGCCATGCGTTCATGCCA 61.274 52.632 0.03 0.00 46.69 4.92
147 148 2.202650 GCCATGCGTTCATGCCAC 60.203 61.111 0.03 0.00 46.69 5.01
148 149 2.992273 GCCATGCGTTCATGCCACA 61.992 57.895 0.03 0.00 46.69 4.17
149 150 1.811195 CCATGCGTTCATGCCACAT 59.189 52.632 0.03 0.00 46.69 3.21
150 151 1.023502 CCATGCGTTCATGCCACATA 58.976 50.000 0.03 0.00 46.69 2.29
151 152 1.610038 CCATGCGTTCATGCCACATAT 59.390 47.619 0.03 0.00 46.69 1.78
152 153 2.606065 CCATGCGTTCATGCCACATATG 60.606 50.000 0.00 0.00 46.69 1.78
153 154 1.748950 TGCGTTCATGCCACATATGT 58.251 45.000 1.41 1.41 0.00 2.29
154 155 1.401199 TGCGTTCATGCCACATATGTG 59.599 47.619 26.02 26.02 45.23 3.21
167 168 3.817084 CACATATGTGGCACTTATCAGGG 59.183 47.826 25.41 11.95 42.10 4.45
168 169 3.459598 ACATATGTGGCACTTATCAGGGT 59.540 43.478 19.83 12.54 0.00 4.34
169 170 2.717639 ATGTGGCACTTATCAGGGTC 57.282 50.000 19.83 0.00 0.00 4.46
170 171 0.618458 TGTGGCACTTATCAGGGTCC 59.382 55.000 19.83 0.00 0.00 4.46
171 172 0.912486 GTGGCACTTATCAGGGTCCT 59.088 55.000 11.13 0.00 0.00 3.85
172 173 1.282157 GTGGCACTTATCAGGGTCCTT 59.718 52.381 11.13 0.00 0.00 3.36
173 174 2.504175 GTGGCACTTATCAGGGTCCTTA 59.496 50.000 11.13 0.00 0.00 2.69
174 175 3.054655 GTGGCACTTATCAGGGTCCTTAA 60.055 47.826 11.13 0.00 0.00 1.85
175 176 3.589735 TGGCACTTATCAGGGTCCTTAAA 59.410 43.478 0.00 0.00 0.00 1.52
176 177 4.043561 TGGCACTTATCAGGGTCCTTAAAA 59.956 41.667 0.00 0.00 0.00 1.52
177 178 5.014202 GGCACTTATCAGGGTCCTTAAAAA 58.986 41.667 0.00 0.00 0.00 1.94
208 209 8.682936 AGTCATCTGGATATTTCATACAAACC 57.317 34.615 0.00 0.00 0.00 3.27
209 210 8.274322 AGTCATCTGGATATTTCATACAAACCA 58.726 33.333 0.00 0.00 0.00 3.67
210 211 8.902806 GTCATCTGGATATTTCATACAAACCAA 58.097 33.333 0.00 0.00 0.00 3.67
211 212 9.645128 TCATCTGGATATTTCATACAAACCAAT 57.355 29.630 0.00 0.00 0.00 3.16
239 240 8.664211 ACAAAAAGTTTTAGACAAACCAAACA 57.336 26.923 0.24 0.00 32.52 2.83
240 241 9.110502 ACAAAAAGTTTTAGACAAACCAAACAA 57.889 25.926 0.24 0.00 32.52 2.83
241 242 9.592720 CAAAAAGTTTTAGACAAACCAAACAAG 57.407 29.630 0.24 0.00 32.52 3.16
242 243 8.896320 AAAAGTTTTAGACAAACCAAACAAGT 57.104 26.923 0.00 0.00 32.52 3.16
243 244 9.984190 AAAAGTTTTAGACAAACCAAACAAGTA 57.016 25.926 0.00 0.00 32.52 2.24
244 245 9.634163 AAAGTTTTAGACAAACCAAACAAGTAG 57.366 29.630 0.00 0.00 32.52 2.57
245 246 8.570068 AGTTTTAGACAAACCAAACAAGTAGA 57.430 30.769 0.00 0.00 32.52 2.59
246 247 9.016438 AGTTTTAGACAAACCAAACAAGTAGAA 57.984 29.630 0.00 0.00 32.52 2.10
247 248 9.797556 GTTTTAGACAAACCAAACAAGTAGAAT 57.202 29.630 0.00 0.00 0.00 2.40
248 249 9.796120 TTTTAGACAAACCAAACAAGTAGAATG 57.204 29.630 0.00 0.00 0.00 2.67
249 250 8.514330 TTAGACAAACCAAACAAGTAGAATGT 57.486 30.769 0.00 0.00 0.00 2.71
250 251 7.404671 AGACAAACCAAACAAGTAGAATGTT 57.595 32.000 0.00 0.00 42.56 2.71
252 253 8.311109 AGACAAACCAAACAAGTAGAATGTTTT 58.689 29.630 2.14 0.00 45.97 2.43
253 254 9.575783 GACAAACCAAACAAGTAGAATGTTTTA 57.424 29.630 2.14 0.00 45.97 1.52
254 255 9.361315 ACAAACCAAACAAGTAGAATGTTTTAC 57.639 29.630 2.14 0.00 45.97 2.01
255 256 9.360093 CAAACCAAACAAGTAGAATGTTTTACA 57.640 29.630 2.14 0.00 45.97 2.41
256 257 8.920509 AACCAAACAAGTAGAATGTTTTACAC 57.079 30.769 2.14 0.00 45.97 2.90
257 258 8.057536 ACCAAACAAGTAGAATGTTTTACACA 57.942 30.769 2.14 0.00 45.97 3.72
258 259 7.971722 ACCAAACAAGTAGAATGTTTTACACAC 59.028 33.333 2.14 0.00 45.97 3.82
259 260 7.434013 CCAAACAAGTAGAATGTTTTACACACC 59.566 37.037 2.14 0.00 45.97 4.16
260 261 7.633193 AACAAGTAGAATGTTTTACACACCA 57.367 32.000 0.00 0.00 37.74 4.17
261 262 7.259290 ACAAGTAGAATGTTTTACACACCAG 57.741 36.000 0.00 0.00 38.61 4.00
262 263 7.051623 ACAAGTAGAATGTTTTACACACCAGA 58.948 34.615 0.00 0.00 38.61 3.86
263 264 7.226720 ACAAGTAGAATGTTTTACACACCAGAG 59.773 37.037 0.00 0.00 38.61 3.35
264 265 6.231211 AGTAGAATGTTTTACACACCAGAGG 58.769 40.000 0.00 0.00 38.61 3.69
265 266 5.304686 AGAATGTTTTACACACCAGAGGA 57.695 39.130 0.00 0.00 38.61 3.71
266 267 5.690865 AGAATGTTTTACACACCAGAGGAA 58.309 37.500 0.00 0.00 38.61 3.36
267 268 6.126409 AGAATGTTTTACACACCAGAGGAAA 58.874 36.000 0.00 0.00 38.61 3.13
268 269 6.263168 AGAATGTTTTACACACCAGAGGAAAG 59.737 38.462 0.00 0.00 38.61 2.62
269 270 5.105567 TGTTTTACACACCAGAGGAAAGA 57.894 39.130 0.00 0.00 0.00 2.52
270 271 4.879545 TGTTTTACACACCAGAGGAAAGAC 59.120 41.667 0.00 0.00 0.00 3.01
271 272 4.764050 TTTACACACCAGAGGAAAGACA 57.236 40.909 0.00 0.00 0.00 3.41
272 273 2.622064 ACACACCAGAGGAAAGACAC 57.378 50.000 0.00 0.00 0.00 3.67
273 274 1.837439 ACACACCAGAGGAAAGACACA 59.163 47.619 0.00 0.00 0.00 3.72
274 275 2.238646 ACACACCAGAGGAAAGACACAA 59.761 45.455 0.00 0.00 0.00 3.33
275 276 3.278574 CACACCAGAGGAAAGACACAAA 58.721 45.455 0.00 0.00 0.00 2.83
276 277 3.885297 CACACCAGAGGAAAGACACAAAT 59.115 43.478 0.00 0.00 0.00 2.32
277 278 4.023707 CACACCAGAGGAAAGACACAAATC 60.024 45.833 0.00 0.00 0.00 2.17
278 279 4.136796 CACCAGAGGAAAGACACAAATCA 58.863 43.478 0.00 0.00 0.00 2.57
279 280 4.580167 CACCAGAGGAAAGACACAAATCAA 59.420 41.667 0.00 0.00 0.00 2.57
280 281 5.067674 CACCAGAGGAAAGACACAAATCAAA 59.932 40.000 0.00 0.00 0.00 2.69
281 282 5.835280 ACCAGAGGAAAGACACAAATCAAAT 59.165 36.000 0.00 0.00 0.00 2.32
282 283 6.324770 ACCAGAGGAAAGACACAAATCAAATT 59.675 34.615 0.00 0.00 0.00 1.82
283 284 7.505585 ACCAGAGGAAAGACACAAATCAAATTA 59.494 33.333 0.00 0.00 0.00 1.40
284 285 8.359642 CCAGAGGAAAGACACAAATCAAATTAA 58.640 33.333 0.00 0.00 0.00 1.40
285 286 9.403110 CAGAGGAAAGACACAAATCAAATTAAG 57.597 33.333 0.00 0.00 0.00 1.85
286 287 9.136323 AGAGGAAAGACACAAATCAAATTAAGT 57.864 29.630 0.00 0.00 0.00 2.24
287 288 9.750125 GAGGAAAGACACAAATCAAATTAAGTT 57.250 29.630 0.00 0.00 0.00 2.66
288 289 9.750125 AGGAAAGACACAAATCAAATTAAGTTC 57.250 29.630 0.00 0.00 0.00 3.01
289 290 9.528018 GGAAAGACACAAATCAAATTAAGTTCA 57.472 29.630 0.00 0.00 0.00 3.18
292 293 9.520204 AAGACACAAATCAAATTAAGTTCAGTG 57.480 29.630 0.00 0.00 0.00 3.66
293 294 8.902806 AGACACAAATCAAATTAAGTTCAGTGA 58.097 29.630 0.00 0.00 0.00 3.41
294 295 8.856490 ACACAAATCAAATTAAGTTCAGTGAC 57.144 30.769 0.00 0.00 0.00 3.67
295 296 8.465999 ACACAAATCAAATTAAGTTCAGTGACA 58.534 29.630 0.00 0.00 0.00 3.58
296 297 8.745837 CACAAATCAAATTAAGTTCAGTGACAC 58.254 33.333 0.00 0.00 0.00 3.67
297 298 8.465999 ACAAATCAAATTAAGTTCAGTGACACA 58.534 29.630 8.59 0.00 0.00 3.72
298 299 9.299963 CAAATCAAATTAAGTTCAGTGACACAA 57.700 29.630 8.59 0.00 0.00 3.33
299 300 9.868277 AAATCAAATTAAGTTCAGTGACACAAA 57.132 25.926 8.59 0.00 0.00 2.83
301 302 8.854979 TCAAATTAAGTTCAGTGACACAAATG 57.145 30.769 8.59 0.00 0.00 2.32
302 303 8.681806 TCAAATTAAGTTCAGTGACACAAATGA 58.318 29.630 8.59 0.00 0.00 2.57
303 304 9.299963 CAAATTAAGTTCAGTGACACAAATGAA 57.700 29.630 8.59 6.51 0.00 2.57
305 306 9.683069 AATTAAGTTCAGTGACACAAATGAATC 57.317 29.630 8.59 4.91 34.45 2.52
306 307 6.698008 AAGTTCAGTGACACAAATGAATCA 57.302 33.333 8.59 0.00 34.45 2.57
307 308 6.889301 AGTTCAGTGACACAAATGAATCAT 57.111 33.333 8.59 0.00 34.45 2.45
308 309 6.906659 AGTTCAGTGACACAAATGAATCATC 58.093 36.000 8.59 0.00 34.45 2.92
309 310 6.487668 AGTTCAGTGACACAAATGAATCATCA 59.512 34.615 8.59 0.00 40.57 3.07
310 311 6.880942 TCAGTGACACAAATGAATCATCAA 57.119 33.333 8.59 0.00 39.49 2.57
311 312 6.671190 TCAGTGACACAAATGAATCATCAAC 58.329 36.000 8.59 0.00 39.49 3.18
312 313 6.262720 TCAGTGACACAAATGAATCATCAACA 59.737 34.615 8.59 0.00 39.49 3.33
313 314 6.361481 CAGTGACACAAATGAATCATCAACAC 59.639 38.462 8.59 2.73 39.49 3.32
314 315 6.039605 AGTGACACAAATGAATCATCAACACA 59.960 34.615 8.59 0.00 39.49 3.72
315 316 6.864685 GTGACACAAATGAATCATCAACACAT 59.135 34.615 0.00 0.00 39.49 3.21
316 317 7.383029 GTGACACAAATGAATCATCAACACATT 59.617 33.333 0.00 0.00 39.49 2.71
317 318 8.574737 TGACACAAATGAATCATCAACACATTA 58.425 29.630 0.00 0.00 39.49 1.90
318 319 9.409312 GACACAAATGAATCATCAACACATTAA 57.591 29.630 0.00 0.00 39.49 1.40
319 320 9.195411 ACACAAATGAATCATCAACACATTAAC 57.805 29.630 0.00 0.00 39.49 2.01
320 321 9.194271 CACAAATGAATCATCAACACATTAACA 57.806 29.630 0.00 0.00 39.49 2.41
321 322 9.414295 ACAAATGAATCATCAACACATTAACAG 57.586 29.630 0.00 0.00 39.49 3.16
322 323 8.377681 CAAATGAATCATCAACACATTAACAGC 58.622 33.333 0.00 0.00 39.49 4.40
323 324 6.572167 TGAATCATCAACACATTAACAGCA 57.428 33.333 0.00 0.00 30.99 4.41
324 325 6.380995 TGAATCATCAACACATTAACAGCAC 58.619 36.000 0.00 0.00 30.99 4.40
325 326 5.963176 ATCATCAACACATTAACAGCACA 57.037 34.783 0.00 0.00 0.00 4.57
326 327 5.764487 TCATCAACACATTAACAGCACAA 57.236 34.783 0.00 0.00 0.00 3.33
327 328 6.141560 TCATCAACACATTAACAGCACAAA 57.858 33.333 0.00 0.00 0.00 2.83
328 329 6.747125 TCATCAACACATTAACAGCACAAAT 58.253 32.000 0.00 0.00 0.00 2.32
329 330 7.208777 TCATCAACACATTAACAGCACAAATT 58.791 30.769 0.00 0.00 0.00 1.82
330 331 7.710044 TCATCAACACATTAACAGCACAAATTT 59.290 29.630 0.00 0.00 0.00 1.82
331 332 7.462109 TCAACACATTAACAGCACAAATTTC 57.538 32.000 0.00 0.00 0.00 2.17
332 333 7.264221 TCAACACATTAACAGCACAAATTTCT 58.736 30.769 0.00 0.00 0.00 2.52
333 334 7.222417 TCAACACATTAACAGCACAAATTTCTG 59.778 33.333 4.31 4.31 0.00 3.02
334 335 6.572519 ACACATTAACAGCACAAATTTCTGT 58.427 32.000 5.43 5.43 42.28 3.41
335 336 6.697019 ACACATTAACAGCACAAATTTCTGTC 59.303 34.615 10.46 0.00 39.86 3.51
336 337 6.696583 CACATTAACAGCACAAATTTCTGTCA 59.303 34.615 10.46 3.31 39.86 3.58
337 338 6.919662 ACATTAACAGCACAAATTTCTGTCAG 59.080 34.615 10.46 0.00 39.86 3.51
338 339 3.360249 ACAGCACAAATTTCTGTCAGC 57.640 42.857 5.43 0.00 36.42 4.26
339 340 2.035066 ACAGCACAAATTTCTGTCAGCC 59.965 45.455 5.43 0.00 36.42 4.85
340 341 2.034939 CAGCACAAATTTCTGTCAGCCA 59.965 45.455 0.00 0.00 0.00 4.75
341 342 2.694628 AGCACAAATTTCTGTCAGCCAA 59.305 40.909 0.00 0.00 0.00 4.52
342 343 3.132646 AGCACAAATTTCTGTCAGCCAAA 59.867 39.130 0.00 0.00 0.00 3.28
343 344 3.870419 GCACAAATTTCTGTCAGCCAAAA 59.130 39.130 0.00 0.00 0.00 2.44
344 345 4.332268 GCACAAATTTCTGTCAGCCAAAAA 59.668 37.500 0.00 0.00 0.00 1.94
364 365 4.691860 AAAGAAATGCAAGAGTCATCGG 57.308 40.909 0.00 0.00 0.00 4.18
365 366 3.616956 AGAAATGCAAGAGTCATCGGA 57.383 42.857 0.00 0.00 0.00 4.55
366 367 3.942829 AGAAATGCAAGAGTCATCGGAA 58.057 40.909 0.00 0.00 0.00 4.30
367 368 4.326826 AGAAATGCAAGAGTCATCGGAAA 58.673 39.130 0.00 0.00 0.00 3.13
368 369 4.761739 AGAAATGCAAGAGTCATCGGAAAA 59.238 37.500 0.00 0.00 0.00 2.29
369 370 5.241506 AGAAATGCAAGAGTCATCGGAAAAA 59.758 36.000 0.00 0.00 0.00 1.94
394 395 9.880157 AAAAAGCAAGATAAGAACATATGCAAT 57.120 25.926 1.58 0.00 34.89 3.56
409 410 9.643652 AACATATGCAATAAAACAAAAACAACG 57.356 25.926 1.58 0.00 29.06 4.10
410 411 8.279103 ACATATGCAATAAAACAAAAACAACGG 58.721 29.630 1.58 0.00 29.06 4.44
411 412 6.670077 ATGCAATAAAACAAAAACAACGGT 57.330 29.167 0.00 0.00 0.00 4.83
412 413 6.481954 TGCAATAAAACAAAAACAACGGTT 57.518 29.167 0.00 0.00 39.43 4.44
413 414 6.307155 TGCAATAAAACAAAAACAACGGTTG 58.693 32.000 18.81 18.81 37.30 3.77
414 415 5.226154 GCAATAAAACAAAAACAACGGTTGC 59.774 36.000 20.20 0.00 37.30 4.17
415 416 6.307155 CAATAAAACAAAAACAACGGTTGCA 58.693 32.000 20.20 0.00 37.30 4.08
416 417 3.797348 AAACAAAAACAACGGTTGCAC 57.203 38.095 20.20 0.00 37.30 4.57
417 418 2.440539 ACAAAAACAACGGTTGCACA 57.559 40.000 20.20 0.00 37.30 4.57
418 419 2.755650 ACAAAAACAACGGTTGCACAA 58.244 38.095 20.20 0.00 37.30 3.33
419 420 3.131396 ACAAAAACAACGGTTGCACAAA 58.869 36.364 20.20 0.00 37.30 2.83
420 421 3.748568 ACAAAAACAACGGTTGCACAAAT 59.251 34.783 20.20 0.00 37.30 2.32
421 422 4.214332 ACAAAAACAACGGTTGCACAAATT 59.786 33.333 20.20 3.72 37.30 1.82
422 423 5.149977 CAAAAACAACGGTTGCACAAATTT 58.850 33.333 20.20 9.48 37.30 1.82
423 424 4.333633 AAACAACGGTTGCACAAATTTG 57.666 36.364 20.20 16.67 37.30 2.32
424 425 2.966050 ACAACGGTTGCACAAATTTGT 58.034 38.095 18.13 18.13 43.36 2.83
425 426 4.111375 ACAACGGTTGCACAAATTTGTA 57.889 36.364 22.87 6.60 39.91 2.41
426 427 4.495422 ACAACGGTTGCACAAATTTGTAA 58.505 34.783 22.87 12.42 39.91 2.41
427 428 5.112686 ACAACGGTTGCACAAATTTGTAAT 58.887 33.333 22.87 0.00 39.91 1.89
428 429 5.006165 ACAACGGTTGCACAAATTTGTAATG 59.994 36.000 22.87 12.50 39.91 1.90
429 430 4.688021 ACGGTTGCACAAATTTGTAATGT 58.312 34.783 22.87 13.85 39.91 2.71
430 431 4.505922 ACGGTTGCACAAATTTGTAATGTG 59.494 37.500 22.87 12.61 45.54 3.21
438 439 7.510428 CACAAATTTGTAATGTGCATCTACC 57.490 36.000 22.87 0.00 39.91 3.18
439 440 6.251163 CACAAATTTGTAATGTGCATCTACCG 59.749 38.462 22.87 2.01 39.91 4.02
440 441 6.072175 ACAAATTTGTAATGTGCATCTACCGT 60.072 34.615 22.10 0.00 40.16 4.83
441 442 7.119992 ACAAATTTGTAATGTGCATCTACCGTA 59.880 33.333 22.10 0.00 40.16 4.02
442 443 6.844696 ATTTGTAATGTGCATCTACCGTAG 57.155 37.500 0.00 0.00 0.00 3.51
443 444 5.585820 TTGTAATGTGCATCTACCGTAGA 57.414 39.130 10.70 10.70 39.50 2.59
444 445 5.784578 TGTAATGTGCATCTACCGTAGAT 57.215 39.130 14.31 14.31 46.06 1.98
445 446 6.156748 TGTAATGTGCATCTACCGTAGATT 57.843 37.500 16.97 6.68 42.70 2.40
446 447 7.279750 TGTAATGTGCATCTACCGTAGATTA 57.720 36.000 16.97 7.94 42.70 1.75
447 448 7.718525 TGTAATGTGCATCTACCGTAGATTAA 58.281 34.615 16.97 7.00 42.70 1.40
448 449 8.198778 TGTAATGTGCATCTACCGTAGATTAAA 58.801 33.333 16.97 6.61 42.70 1.52
449 450 9.037737 GTAATGTGCATCTACCGTAGATTAAAA 57.962 33.333 16.97 5.65 42.70 1.52
450 451 7.715265 ATGTGCATCTACCGTAGATTAAAAG 57.285 36.000 16.97 8.06 42.70 2.27
451 452 6.636705 TGTGCATCTACCGTAGATTAAAAGT 58.363 36.000 16.97 0.00 42.70 2.66
452 453 6.533723 TGTGCATCTACCGTAGATTAAAAGTG 59.466 38.462 16.97 8.17 42.70 3.16
453 454 5.522460 TGCATCTACCGTAGATTAAAAGTGC 59.478 40.000 16.97 16.51 42.70 4.40
454 455 5.522460 GCATCTACCGTAGATTAAAAGTGCA 59.478 40.000 16.97 0.00 42.70 4.57
455 456 6.509677 GCATCTACCGTAGATTAAAAGTGCAC 60.510 42.308 16.97 9.40 42.70 4.57
456 457 6.276832 TCTACCGTAGATTAAAAGTGCACT 57.723 37.500 15.25 15.25 0.00 4.40
457 458 6.097356 TCTACCGTAGATTAAAAGTGCACTG 58.903 40.000 22.49 5.45 0.00 3.66
458 459 3.435671 ACCGTAGATTAAAAGTGCACTGC 59.564 43.478 22.49 6.08 0.00 4.40
459 460 3.435327 CCGTAGATTAAAAGTGCACTGCA 59.565 43.478 22.49 5.60 35.60 4.41
460 461 4.094887 CCGTAGATTAAAAGTGCACTGCAT 59.905 41.667 22.49 12.16 41.91 3.96
461 462 5.293324 CCGTAGATTAAAAGTGCACTGCATA 59.707 40.000 22.49 11.10 41.91 3.14
462 463 6.414079 CGTAGATTAAAAGTGCACTGCATAG 58.586 40.000 22.49 1.02 41.91 2.23
463 464 5.824904 AGATTAAAAGTGCACTGCATAGG 57.175 39.130 22.49 0.00 41.91 2.57
464 465 5.500234 AGATTAAAAGTGCACTGCATAGGA 58.500 37.500 22.49 3.57 41.91 2.94
465 466 5.945784 AGATTAAAAGTGCACTGCATAGGAA 59.054 36.000 22.49 8.43 41.91 3.36
466 467 6.434028 AGATTAAAAGTGCACTGCATAGGAAA 59.566 34.615 22.49 7.06 41.91 3.13
467 468 4.935352 AAAAGTGCACTGCATAGGAAAA 57.065 36.364 22.49 0.00 41.91 2.29
468 469 4.510038 AAAGTGCACTGCATAGGAAAAG 57.490 40.909 22.49 0.00 41.91 2.27
469 470 3.423539 AGTGCACTGCATAGGAAAAGA 57.576 42.857 20.97 0.00 41.91 2.52
470 471 3.754965 AGTGCACTGCATAGGAAAAGAA 58.245 40.909 20.97 0.00 41.91 2.52
471 472 4.338879 AGTGCACTGCATAGGAAAAGAAT 58.661 39.130 20.97 0.00 41.91 2.40
472 473 5.500234 AGTGCACTGCATAGGAAAAGAATA 58.500 37.500 20.97 0.00 41.91 1.75
473 474 5.945784 AGTGCACTGCATAGGAAAAGAATAA 59.054 36.000 20.97 0.00 41.91 1.40
474 475 6.434028 AGTGCACTGCATAGGAAAAGAATAAA 59.566 34.615 20.97 0.00 41.91 1.40
475 476 7.123247 AGTGCACTGCATAGGAAAAGAATAAAT 59.877 33.333 20.97 0.00 41.91 1.40
476 477 7.221452 GTGCACTGCATAGGAAAAGAATAAATG 59.779 37.037 10.32 0.00 41.91 2.32
477 478 6.698766 GCACTGCATAGGAAAAGAATAAATGG 59.301 38.462 0.00 0.00 0.00 3.16
478 479 7.631377 GCACTGCATAGGAAAAGAATAAATGGT 60.631 37.037 0.00 0.00 0.00 3.55
479 480 8.253113 CACTGCATAGGAAAAGAATAAATGGTT 58.747 33.333 0.00 0.00 0.00 3.67
480 481 8.470002 ACTGCATAGGAAAAGAATAAATGGTTC 58.530 33.333 0.00 0.00 0.00 3.62
481 482 8.359875 TGCATAGGAAAAGAATAAATGGTTCA 57.640 30.769 0.00 0.00 0.00 3.18
482 483 8.980596 TGCATAGGAAAAGAATAAATGGTTCAT 58.019 29.630 0.00 0.00 0.00 2.57
483 484 9.822185 GCATAGGAAAAGAATAAATGGTTCATT 57.178 29.630 0.00 0.00 35.39 2.57
553 554 4.806936 CAGCTGACTGGCAGGAAA 57.193 55.556 20.34 2.56 45.03 3.13
554 555 2.552802 CAGCTGACTGGCAGGAAAG 58.447 57.895 20.34 13.52 45.03 2.62
555 556 0.035881 CAGCTGACTGGCAGGAAAGA 59.964 55.000 20.34 0.00 45.03 2.52
556 557 0.036022 AGCTGACTGGCAGGAAAGAC 59.964 55.000 20.34 8.98 45.03 3.01
557 558 0.250467 GCTGACTGGCAGGAAAGACA 60.250 55.000 20.34 7.82 45.03 3.41
558 559 1.815408 GCTGACTGGCAGGAAAGACAA 60.815 52.381 20.34 0.00 45.03 3.18
559 560 2.787994 CTGACTGGCAGGAAAGACAAT 58.212 47.619 20.34 0.00 41.07 2.71
560 561 3.152341 CTGACTGGCAGGAAAGACAATT 58.848 45.455 20.34 0.00 41.07 2.32
561 562 3.149196 TGACTGGCAGGAAAGACAATTC 58.851 45.455 20.34 3.48 0.00 2.17
570 571 3.665190 GGAAAGACAATTCCAGTCGACT 58.335 45.455 13.58 13.58 46.70 4.18
571 572 3.433615 GGAAAGACAATTCCAGTCGACTG 59.566 47.826 33.87 33.87 46.70 3.51
572 573 4.307432 GAAAGACAATTCCAGTCGACTGA 58.693 43.478 40.21 25.41 46.59 3.41
573 574 4.543590 AAGACAATTCCAGTCGACTGAT 57.456 40.909 40.21 26.39 46.59 2.90
574 575 5.661056 AAGACAATTCCAGTCGACTGATA 57.339 39.130 40.21 28.35 46.59 2.15
575 576 5.860941 AGACAATTCCAGTCGACTGATAT 57.139 39.130 40.21 29.10 46.59 1.63
576 577 5.837437 AGACAATTCCAGTCGACTGATATC 58.163 41.667 40.21 26.06 46.59 1.63
577 578 4.950050 ACAATTCCAGTCGACTGATATCC 58.050 43.478 40.21 1.81 46.59 2.59
578 579 4.405680 ACAATTCCAGTCGACTGATATCCA 59.594 41.667 40.21 20.08 46.59 3.41
579 580 4.862902 ATTCCAGTCGACTGATATCCAG 57.137 45.455 40.21 24.14 46.59 3.86
580 581 1.957177 TCCAGTCGACTGATATCCAGC 59.043 52.381 40.21 0.00 46.81 4.85
581 582 1.683385 CCAGTCGACTGATATCCAGCA 59.317 52.381 40.21 0.00 46.81 4.41
582 583 2.101415 CCAGTCGACTGATATCCAGCAA 59.899 50.000 40.21 0.00 46.81 3.91
583 584 3.430790 CCAGTCGACTGATATCCAGCAAA 60.431 47.826 40.21 0.00 46.81 3.68
584 585 4.375272 CAGTCGACTGATATCCAGCAAAT 58.625 43.478 36.73 0.00 46.81 2.32
585 586 4.447054 CAGTCGACTGATATCCAGCAAATC 59.553 45.833 36.73 0.00 46.81 2.17
586 587 4.343526 AGTCGACTGATATCCAGCAAATCT 59.656 41.667 19.30 0.00 46.81 2.40
587 588 4.447054 GTCGACTGATATCCAGCAAATCTG 59.553 45.833 8.70 0.00 46.81 2.90
588 589 4.100035 TCGACTGATATCCAGCAAATCTGT 59.900 41.667 0.00 0.00 46.81 3.41
592 593 7.814587 CGACTGATATCCAGCAAATCTGTTATA 59.185 37.037 0.00 0.00 46.81 0.98
627 628 2.890311 TGTATGTGCTTTCTTGGTTGGG 59.110 45.455 0.00 0.00 0.00 4.12
631 632 0.480690 TGCTTTCTTGGTTGGGCCTA 59.519 50.000 4.53 0.00 38.35 3.93
682 684 5.903530 GCTAATTGTTGTTTCTGCAAAAAGC 59.096 36.000 0.00 0.00 45.96 3.51
695 697 4.736126 GCAAAAAGCATATACCACCCTT 57.264 40.909 0.00 0.00 44.79 3.95
696 698 4.682787 GCAAAAAGCATATACCACCCTTC 58.317 43.478 0.00 0.00 44.79 3.46
697 699 4.441495 GCAAAAAGCATATACCACCCTTCC 60.441 45.833 0.00 0.00 44.79 3.46
698 700 4.601406 AAAAGCATATACCACCCTTCCA 57.399 40.909 0.00 0.00 0.00 3.53
699 701 4.601406 AAAGCATATACCACCCTTCCAA 57.399 40.909 0.00 0.00 0.00 3.53
700 702 4.601406 AAGCATATACCACCCTTCCAAA 57.399 40.909 0.00 0.00 0.00 3.28
701 703 4.601406 AGCATATACCACCCTTCCAAAA 57.399 40.909 0.00 0.00 0.00 2.44
702 704 5.142806 AGCATATACCACCCTTCCAAAAT 57.857 39.130 0.00 0.00 0.00 1.82
703 705 6.274322 AGCATATACCACCCTTCCAAAATA 57.726 37.500 0.00 0.00 0.00 1.40
704 706 6.678547 AGCATATACCACCCTTCCAAAATAA 58.321 36.000 0.00 0.00 0.00 1.40
705 707 7.129425 AGCATATACCACCCTTCCAAAATAAA 58.871 34.615 0.00 0.00 0.00 1.40
706 708 7.069455 AGCATATACCACCCTTCCAAAATAAAC 59.931 37.037 0.00 0.00 0.00 2.01
707 709 7.147811 GCATATACCACCCTTCCAAAATAAACA 60.148 37.037 0.00 0.00 0.00 2.83
708 710 8.923270 CATATACCACCCTTCCAAAATAAACAT 58.077 33.333 0.00 0.00 0.00 2.71
712 714 8.301252 ACCACCCTTCCAAAATAAACATATAC 57.699 34.615 0.00 0.00 0.00 1.47
719 721 9.301153 CTTCCAAAATAAACATATACAACCTGC 57.699 33.333 0.00 0.00 0.00 4.85
783 785 9.046296 CACCACACCTTCTCTAATTACATTATC 57.954 37.037 0.00 0.00 0.00 1.75
786 788 9.046296 CACACCTTCTCTAATTACATTATCCAC 57.954 37.037 0.00 0.00 0.00 4.02
790 792 9.057089 CCTTCTCTAATTACATTATCCACCAAC 57.943 37.037 0.00 0.00 0.00 3.77
813 815 9.086336 CAACAATCTTATGACAACACTGTTTTT 57.914 29.630 0.00 0.00 35.30 1.94
814 816 8.856490 ACAATCTTATGACAACACTGTTTTTC 57.144 30.769 0.00 0.00 35.30 2.29
815 817 8.686334 ACAATCTTATGACAACACTGTTTTTCT 58.314 29.630 0.00 0.00 35.30 2.52
955 974 3.532542 CATCATCATCCCATCATCCTCG 58.467 50.000 0.00 0.00 0.00 4.63
973 992 3.511699 CTCGCTAGTAGCACACATTTCA 58.488 45.455 21.70 0.00 42.58 2.69
1122 1143 3.343421 GACGACGGCAACCACCAC 61.343 66.667 0.00 0.00 0.00 4.16
1125 1146 3.284449 GACGGCAACCACCACCAC 61.284 66.667 0.00 0.00 0.00 4.16
1317 1338 2.664081 CCACTGCCACTCCCTCCTC 61.664 68.421 0.00 0.00 0.00 3.71
1667 1694 1.031029 AACTACTCCCTCTCGTCCGC 61.031 60.000 0.00 0.00 0.00 5.54
1668 1695 2.513204 TACTCCCTCTCGTCCGCG 60.513 66.667 0.00 0.00 39.92 6.46
1669 1696 3.320879 TACTCCCTCTCGTCCGCGT 62.321 63.158 4.92 0.00 39.49 6.01
1670 1697 3.878519 CTCCCTCTCGTCCGCGTC 61.879 72.222 4.92 0.00 39.49 5.19
1859 1898 2.223203 CCGCTTGTACTACGGTCTACTG 60.223 54.545 11.95 0.00 42.01 2.74
1971 2015 1.032014 GCTGGTGATTGTGTGTGGTT 58.968 50.000 0.00 0.00 0.00 3.67
1991 2035 9.632807 TGTGGTTTAGTATCAAATAATTGTTGC 57.367 29.630 0.00 0.00 37.79 4.17
2019 2063 9.116067 GCCTGGTTAATCTGTGTGTAATAATTA 57.884 33.333 0.00 0.00 0.00 1.40
2084 2179 9.197694 GAGGATGTGTGTATTTCAGTATGTATC 57.802 37.037 0.00 0.00 37.40 2.24
2105 2200 3.958147 TCTGTGTACTCTTTGAGTGACCA 59.042 43.478 10.14 2.45 43.30 4.02
2237 2332 6.636447 CAGTGCATTTGAACTAAAATCACGAA 59.364 34.615 0.00 0.00 35.30 3.85
2254 2349 4.393680 TCACGAAAAGAATTATGGAACGGG 59.606 41.667 0.00 0.00 0.00 5.28
2435 2776 3.500680 TGACGTTGAGAATTAGCAAACCC 59.499 43.478 0.00 0.00 0.00 4.11
2439 2780 1.810151 TGAGAATTAGCAAACCCGTGC 59.190 47.619 0.00 0.00 45.28 5.34
2446 2787 3.767287 GCAAACCCGTGCTCTTTAC 57.233 52.632 0.00 0.00 41.51 2.01
2455 2796 1.612442 TGCTCTTTACGGAGGCCCT 60.612 57.895 0.00 0.00 34.21 5.19
2456 2797 1.198759 TGCTCTTTACGGAGGCCCTT 61.199 55.000 0.00 0.00 34.21 3.95
2492 2833 2.609459 GTGGGAATGTCTCATGTAAGCG 59.391 50.000 0.00 0.00 0.00 4.68
2502 2843 3.133901 TCTCATGTAAGCGCCCTTTATCA 59.866 43.478 2.29 0.00 32.47 2.15
2518 2859 9.047371 GCCCTTTATCAAGTTAGAGAATAGTTC 57.953 37.037 0.00 0.00 0.00 3.01
2541 2883 8.773645 GTTCATTTTTAGCTTTGTTATTGGCTT 58.226 29.630 0.00 0.00 36.40 4.35
2542 2884 8.900983 TCATTTTTAGCTTTGTTATTGGCTTT 57.099 26.923 0.00 0.00 36.40 3.51
2543 2885 9.988815 TCATTTTTAGCTTTGTTATTGGCTTTA 57.011 25.926 0.00 0.00 36.40 1.85
2620 2964 4.389374 CCTCAAGAAGTGGTCTTTAGCAA 58.611 43.478 0.00 0.00 44.64 3.91
2658 3002 7.648142 TCGACAGCATAAATCCAAAATATTCC 58.352 34.615 0.00 0.00 0.00 3.01
2690 3034 4.941263 GTGTGCAATAGTGGGTGAGATAAA 59.059 41.667 0.00 0.00 0.00 1.40
2703 3047 6.781014 TGGGTGAGATAAATAGAGACCGTTAT 59.219 38.462 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.701400 GTCAAGCATGGTAATTGTCAGTTTTT 59.299 34.615 0.00 0.00 0.00 1.94
51 52 6.183360 TGTCAAGCATGGTAATTGTCAGTTTT 60.183 34.615 0.00 0.00 0.00 2.43
52 53 5.301551 TGTCAAGCATGGTAATTGTCAGTTT 59.698 36.000 0.00 0.00 0.00 2.66
53 54 4.826733 TGTCAAGCATGGTAATTGTCAGTT 59.173 37.500 0.00 0.00 0.00 3.16
54 55 4.397420 TGTCAAGCATGGTAATTGTCAGT 58.603 39.130 0.00 0.00 0.00 3.41
55 56 5.048504 AGTTGTCAAGCATGGTAATTGTCAG 60.049 40.000 0.00 0.00 0.00 3.51
56 57 4.826733 AGTTGTCAAGCATGGTAATTGTCA 59.173 37.500 0.00 0.00 0.00 3.58
57 58 5.376854 AGTTGTCAAGCATGGTAATTGTC 57.623 39.130 0.00 0.00 0.00 3.18
58 59 6.892658 TTAGTTGTCAAGCATGGTAATTGT 57.107 33.333 0.00 0.00 0.00 2.71
59 60 7.370383 ACTTTAGTTGTCAAGCATGGTAATTG 58.630 34.615 0.00 0.00 0.00 2.32
60 61 7.524717 ACTTTAGTTGTCAAGCATGGTAATT 57.475 32.000 0.00 0.00 0.00 1.40
61 62 7.524717 AACTTTAGTTGTCAAGCATGGTAAT 57.475 32.000 0.00 0.00 36.80 1.89
62 63 6.952773 AACTTTAGTTGTCAAGCATGGTAA 57.047 33.333 0.00 0.00 36.80 2.85
115 116 3.721035 GCATGGCAACTCTGAACTTTTT 58.279 40.909 0.00 0.00 37.61 1.94
116 117 2.287788 CGCATGGCAACTCTGAACTTTT 60.288 45.455 0.00 0.00 37.61 2.27
117 118 1.267806 CGCATGGCAACTCTGAACTTT 59.732 47.619 0.00 0.00 37.61 2.66
118 119 0.877071 CGCATGGCAACTCTGAACTT 59.123 50.000 0.00 0.00 37.61 2.66
119 120 0.250467 ACGCATGGCAACTCTGAACT 60.250 50.000 0.00 0.00 37.61 3.01
120 121 0.593128 AACGCATGGCAACTCTGAAC 59.407 50.000 0.00 0.00 37.61 3.18
121 122 0.874390 GAACGCATGGCAACTCTGAA 59.126 50.000 0.00 0.00 37.61 3.02
122 123 0.250252 TGAACGCATGGCAACTCTGA 60.250 50.000 0.00 0.00 37.61 3.27
123 124 0.806868 ATGAACGCATGGCAACTCTG 59.193 50.000 0.00 0.00 32.31 3.35
124 125 0.806868 CATGAACGCATGGCAACTCT 59.193 50.000 0.00 0.00 46.45 3.24
125 126 3.317608 CATGAACGCATGGCAACTC 57.682 52.632 0.00 0.00 46.45 3.01
132 133 4.093261 CACATATGTGGCATGAACGCATG 61.093 47.826 25.41 14.57 44.29 4.06
133 134 2.033675 CACATATGTGGCATGAACGCAT 59.966 45.455 25.41 17.28 42.10 4.73
134 135 1.401199 CACATATGTGGCATGAACGCA 59.599 47.619 25.41 1.13 42.10 5.24
135 136 2.109609 CACATATGTGGCATGAACGC 57.890 50.000 25.41 0.00 42.10 4.84
145 146 3.817084 CCCTGATAAGTGCCACATATGTG 59.183 47.826 26.02 26.02 45.23 3.21
146 147 3.459598 ACCCTGATAAGTGCCACATATGT 59.540 43.478 1.41 1.41 0.00 2.29
147 148 4.067896 GACCCTGATAAGTGCCACATATG 58.932 47.826 0.00 0.00 0.00 1.78
148 149 3.073062 GGACCCTGATAAGTGCCACATAT 59.927 47.826 0.00 0.00 0.00 1.78
149 150 2.438021 GGACCCTGATAAGTGCCACATA 59.562 50.000 0.00 0.00 0.00 2.29
150 151 1.212935 GGACCCTGATAAGTGCCACAT 59.787 52.381 0.00 0.00 0.00 3.21
151 152 0.618458 GGACCCTGATAAGTGCCACA 59.382 55.000 0.00 0.00 0.00 4.17
152 153 0.912486 AGGACCCTGATAAGTGCCAC 59.088 55.000 0.00 0.00 0.00 5.01
153 154 1.668826 AAGGACCCTGATAAGTGCCA 58.331 50.000 0.00 0.00 0.00 4.92
154 155 3.926058 TTAAGGACCCTGATAAGTGCC 57.074 47.619 0.00 0.00 0.00 5.01
182 183 9.778741 GGTTTGTATGAAATATCCAGATGACTA 57.221 33.333 0.00 0.00 0.00 2.59
183 184 8.274322 TGGTTTGTATGAAATATCCAGATGACT 58.726 33.333 0.00 0.00 0.00 3.41
184 185 8.450578 TGGTTTGTATGAAATATCCAGATGAC 57.549 34.615 0.00 0.00 0.00 3.06
185 186 9.645128 ATTGGTTTGTATGAAATATCCAGATGA 57.355 29.630 0.00 0.00 0.00 2.92
213 214 9.110502 TGTTTGGTTTGTCTAAAACTTTTTGTT 57.889 25.926 0.00 0.00 41.29 2.83
214 215 8.664211 TGTTTGGTTTGTCTAAAACTTTTTGT 57.336 26.923 0.00 0.00 34.54 2.83
215 216 9.592720 CTTGTTTGGTTTGTCTAAAACTTTTTG 57.407 29.630 0.00 0.00 34.54 2.44
216 217 9.332502 ACTTGTTTGGTTTGTCTAAAACTTTTT 57.667 25.926 1.42 0.00 34.54 1.94
217 218 8.896320 ACTTGTTTGGTTTGTCTAAAACTTTT 57.104 26.923 1.42 0.00 34.54 2.27
218 219 9.634163 CTACTTGTTTGGTTTGTCTAAAACTTT 57.366 29.630 1.42 0.00 34.54 2.66
219 220 9.016438 TCTACTTGTTTGGTTTGTCTAAAACTT 57.984 29.630 1.42 0.00 34.54 2.66
220 221 8.570068 TCTACTTGTTTGGTTTGTCTAAAACT 57.430 30.769 1.42 0.00 34.54 2.66
221 222 9.797556 ATTCTACTTGTTTGGTTTGTCTAAAAC 57.202 29.630 0.00 0.00 34.02 2.43
222 223 9.796120 CATTCTACTTGTTTGGTTTGTCTAAAA 57.204 29.630 0.00 0.00 0.00 1.52
223 224 8.962679 ACATTCTACTTGTTTGGTTTGTCTAAA 58.037 29.630 0.00 0.00 0.00 1.85
224 225 8.514330 ACATTCTACTTGTTTGGTTTGTCTAA 57.486 30.769 0.00 0.00 0.00 2.10
225 226 8.514330 AACATTCTACTTGTTTGGTTTGTCTA 57.486 30.769 0.00 0.00 33.64 2.59
226 227 7.404671 AACATTCTACTTGTTTGGTTTGTCT 57.595 32.000 0.00 0.00 33.64 3.41
227 228 8.474006 AAAACATTCTACTTGTTTGGTTTGTC 57.526 30.769 2.86 0.00 44.32 3.18
228 229 9.361315 GTAAAACATTCTACTTGTTTGGTTTGT 57.639 29.630 2.86 0.00 44.32 2.83
229 230 9.360093 TGTAAAACATTCTACTTGTTTGGTTTG 57.640 29.630 2.86 0.00 44.32 2.93
230 231 9.361315 GTGTAAAACATTCTACTTGTTTGGTTT 57.639 29.630 2.86 0.00 44.32 3.27
231 232 8.524487 TGTGTAAAACATTCTACTTGTTTGGTT 58.476 29.630 2.86 0.00 44.32 3.67
232 233 7.971722 GTGTGTAAAACATTCTACTTGTTTGGT 59.028 33.333 2.86 0.00 44.32 3.67
233 234 7.434013 GGTGTGTAAAACATTCTACTTGTTTGG 59.566 37.037 2.86 0.00 44.32 3.28
234 235 7.971168 TGGTGTGTAAAACATTCTACTTGTTTG 59.029 33.333 2.86 0.00 44.32 2.93
235 236 8.057536 TGGTGTGTAAAACATTCTACTTGTTT 57.942 30.769 0.00 0.00 46.38 2.83
236 237 7.554835 TCTGGTGTGTAAAACATTCTACTTGTT 59.445 33.333 0.00 0.00 41.97 2.83
237 238 7.051623 TCTGGTGTGTAAAACATTCTACTTGT 58.948 34.615 0.00 0.00 41.97 3.16
238 239 7.307989 CCTCTGGTGTGTAAAACATTCTACTTG 60.308 40.741 0.00 0.00 41.97 3.16
239 240 6.710744 CCTCTGGTGTGTAAAACATTCTACTT 59.289 38.462 0.00 0.00 41.97 2.24
240 241 6.042781 TCCTCTGGTGTGTAAAACATTCTACT 59.957 38.462 0.00 0.00 41.97 2.57
241 242 6.228258 TCCTCTGGTGTGTAAAACATTCTAC 58.772 40.000 0.00 0.00 41.97 2.59
242 243 6.428083 TCCTCTGGTGTGTAAAACATTCTA 57.572 37.500 0.00 0.00 41.97 2.10
243 244 5.304686 TCCTCTGGTGTGTAAAACATTCT 57.695 39.130 0.00 0.00 41.97 2.40
244 245 6.262273 TCTTTCCTCTGGTGTGTAAAACATTC 59.738 38.462 0.00 0.00 41.97 2.67
245 246 6.039382 GTCTTTCCTCTGGTGTGTAAAACATT 59.961 38.462 0.00 0.00 41.97 2.71
246 247 5.531287 GTCTTTCCTCTGGTGTGTAAAACAT 59.469 40.000 0.00 0.00 41.97 2.71
247 248 4.879545 GTCTTTCCTCTGGTGTGTAAAACA 59.120 41.667 0.00 0.00 36.04 2.83
248 249 4.879545 TGTCTTTCCTCTGGTGTGTAAAAC 59.120 41.667 0.00 0.00 0.00 2.43
249 250 4.879545 GTGTCTTTCCTCTGGTGTGTAAAA 59.120 41.667 0.00 0.00 0.00 1.52
250 251 4.080807 TGTGTCTTTCCTCTGGTGTGTAAA 60.081 41.667 0.00 0.00 0.00 2.01
251 252 3.452990 TGTGTCTTTCCTCTGGTGTGTAA 59.547 43.478 0.00 0.00 0.00 2.41
252 253 3.035363 TGTGTCTTTCCTCTGGTGTGTA 58.965 45.455 0.00 0.00 0.00 2.90
253 254 1.837439 TGTGTCTTTCCTCTGGTGTGT 59.163 47.619 0.00 0.00 0.00 3.72
254 255 2.620251 TGTGTCTTTCCTCTGGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
255 256 3.644966 TTTGTGTCTTTCCTCTGGTGT 57.355 42.857 0.00 0.00 0.00 4.16
256 257 4.136796 TGATTTGTGTCTTTCCTCTGGTG 58.863 43.478 0.00 0.00 0.00 4.17
257 258 4.437682 TGATTTGTGTCTTTCCTCTGGT 57.562 40.909 0.00 0.00 0.00 4.00
258 259 5.772825 TTTGATTTGTGTCTTTCCTCTGG 57.227 39.130 0.00 0.00 0.00 3.86
259 260 9.403110 CTTAATTTGATTTGTGTCTTTCCTCTG 57.597 33.333 0.00 0.00 0.00 3.35
260 261 9.136323 ACTTAATTTGATTTGTGTCTTTCCTCT 57.864 29.630 0.00 0.00 0.00 3.69
261 262 9.750125 AACTTAATTTGATTTGTGTCTTTCCTC 57.250 29.630 0.00 0.00 0.00 3.71
262 263 9.750125 GAACTTAATTTGATTTGTGTCTTTCCT 57.250 29.630 0.00 0.00 0.00 3.36
263 264 9.528018 TGAACTTAATTTGATTTGTGTCTTTCC 57.472 29.630 0.00 0.00 0.00 3.13
266 267 9.520204 CACTGAACTTAATTTGATTTGTGTCTT 57.480 29.630 0.00 0.00 0.00 3.01
267 268 8.902806 TCACTGAACTTAATTTGATTTGTGTCT 58.097 29.630 0.00 0.00 0.00 3.41
268 269 8.958043 GTCACTGAACTTAATTTGATTTGTGTC 58.042 33.333 0.00 0.00 0.00 3.67
269 270 8.465999 TGTCACTGAACTTAATTTGATTTGTGT 58.534 29.630 0.00 0.00 0.00 3.72
270 271 8.745837 GTGTCACTGAACTTAATTTGATTTGTG 58.254 33.333 0.00 0.00 0.00 3.33
271 272 8.465999 TGTGTCACTGAACTTAATTTGATTTGT 58.534 29.630 4.27 0.00 0.00 2.83
272 273 8.854979 TGTGTCACTGAACTTAATTTGATTTG 57.145 30.769 4.27 0.00 0.00 2.32
273 274 9.868277 TTTGTGTCACTGAACTTAATTTGATTT 57.132 25.926 4.27 0.00 0.00 2.17
275 276 9.467258 CATTTGTGTCACTGAACTTAATTTGAT 57.533 29.630 4.27 0.00 0.00 2.57
276 277 8.681806 TCATTTGTGTCACTGAACTTAATTTGA 58.318 29.630 4.27 0.00 0.00 2.69
277 278 8.854979 TCATTTGTGTCACTGAACTTAATTTG 57.145 30.769 4.27 0.00 0.00 2.32
279 280 9.683069 GATTCATTTGTGTCACTGAACTTAATT 57.317 29.630 7.96 0.00 31.00 1.40
280 281 8.849168 TGATTCATTTGTGTCACTGAACTTAAT 58.151 29.630 7.96 3.45 31.00 1.40
281 282 8.219546 TGATTCATTTGTGTCACTGAACTTAA 57.780 30.769 7.96 0.00 31.00 1.85
282 283 7.800155 TGATTCATTTGTGTCACTGAACTTA 57.200 32.000 7.96 0.00 31.00 2.24
283 284 6.698008 TGATTCATTTGTGTCACTGAACTT 57.302 33.333 7.96 0.00 31.00 2.66
284 285 6.487668 TGATGATTCATTTGTGTCACTGAACT 59.512 34.615 7.96 0.46 31.00 3.01
285 286 6.671190 TGATGATTCATTTGTGTCACTGAAC 58.329 36.000 7.96 4.60 31.00 3.18
286 287 6.880942 TGATGATTCATTTGTGTCACTGAA 57.119 33.333 4.27 6.57 32.63 3.02
287 288 6.262720 TGTTGATGATTCATTTGTGTCACTGA 59.737 34.615 4.27 0.00 0.00 3.41
288 289 6.361481 GTGTTGATGATTCATTTGTGTCACTG 59.639 38.462 4.27 0.00 0.00 3.66
289 290 6.039605 TGTGTTGATGATTCATTTGTGTCACT 59.960 34.615 4.27 0.00 0.00 3.41
290 291 6.207928 TGTGTTGATGATTCATTTGTGTCAC 58.792 36.000 0.00 0.00 0.00 3.67
291 292 6.388435 TGTGTTGATGATTCATTTGTGTCA 57.612 33.333 0.00 0.00 0.00 3.58
292 293 7.878477 AATGTGTTGATGATTCATTTGTGTC 57.122 32.000 0.00 0.00 0.00 3.67
293 294 9.195411 GTTAATGTGTTGATGATTCATTTGTGT 57.805 29.630 0.00 0.00 32.27 3.72
294 295 9.194271 TGTTAATGTGTTGATGATTCATTTGTG 57.806 29.630 0.00 0.00 32.27 3.33
295 296 9.414295 CTGTTAATGTGTTGATGATTCATTTGT 57.586 29.630 0.00 0.00 32.27 2.83
296 297 8.377681 GCTGTTAATGTGTTGATGATTCATTTG 58.622 33.333 0.00 0.00 32.27 2.32
297 298 8.089597 TGCTGTTAATGTGTTGATGATTCATTT 58.910 29.630 0.00 0.00 32.27 2.32
298 299 7.543172 GTGCTGTTAATGTGTTGATGATTCATT 59.457 33.333 0.00 0.00 34.02 2.57
299 300 7.031372 GTGCTGTTAATGTGTTGATGATTCAT 58.969 34.615 0.00 0.00 0.00 2.57
300 301 6.016443 TGTGCTGTTAATGTGTTGATGATTCA 60.016 34.615 0.00 0.00 0.00 2.57
301 302 6.380995 TGTGCTGTTAATGTGTTGATGATTC 58.619 36.000 0.00 0.00 0.00 2.52
302 303 6.330004 TGTGCTGTTAATGTGTTGATGATT 57.670 33.333 0.00 0.00 0.00 2.57
303 304 5.963176 TGTGCTGTTAATGTGTTGATGAT 57.037 34.783 0.00 0.00 0.00 2.45
304 305 5.764487 TTGTGCTGTTAATGTGTTGATGA 57.236 34.783 0.00 0.00 0.00 2.92
305 306 7.410800 AATTTGTGCTGTTAATGTGTTGATG 57.589 32.000 0.00 0.00 0.00 3.07
306 307 7.927629 AGAAATTTGTGCTGTTAATGTGTTGAT 59.072 29.630 0.00 0.00 0.00 2.57
307 308 7.222417 CAGAAATTTGTGCTGTTAATGTGTTGA 59.778 33.333 1.97 0.00 0.00 3.18
308 309 7.010367 ACAGAAATTTGTGCTGTTAATGTGTTG 59.990 33.333 14.80 0.00 39.69 3.33
309 310 7.041107 ACAGAAATTTGTGCTGTTAATGTGTT 58.959 30.769 14.80 0.00 39.69 3.32
310 311 6.572519 ACAGAAATTTGTGCTGTTAATGTGT 58.427 32.000 14.80 0.00 39.69 3.72
311 312 6.696583 TGACAGAAATTTGTGCTGTTAATGTG 59.303 34.615 14.80 0.00 42.47 3.21
312 313 6.804677 TGACAGAAATTTGTGCTGTTAATGT 58.195 32.000 14.80 0.00 42.47 2.71
313 314 6.129009 GCTGACAGAAATTTGTGCTGTTAATG 60.129 38.462 14.80 6.13 42.47 1.90
314 315 5.922544 GCTGACAGAAATTTGTGCTGTTAAT 59.077 36.000 14.80 0.00 42.47 1.40
315 316 5.280945 GCTGACAGAAATTTGTGCTGTTAA 58.719 37.500 14.80 5.34 42.47 2.01
316 317 4.261572 GGCTGACAGAAATTTGTGCTGTTA 60.262 41.667 14.80 8.59 42.47 2.41
317 318 3.491447 GGCTGACAGAAATTTGTGCTGTT 60.491 43.478 14.80 0.00 42.47 3.16
318 319 2.035066 GGCTGACAGAAATTTGTGCTGT 59.965 45.455 14.80 12.22 44.87 4.40
319 320 2.034939 TGGCTGACAGAAATTTGTGCTG 59.965 45.455 14.80 9.19 35.81 4.41
320 321 2.309613 TGGCTGACAGAAATTTGTGCT 58.690 42.857 14.80 3.07 0.00 4.40
321 322 2.798976 TGGCTGACAGAAATTTGTGC 57.201 45.000 14.80 8.62 0.00 4.57
341 342 5.241506 TCCGATGACTCTTGCATTTCTTTTT 59.758 36.000 0.00 0.00 0.00 1.94
342 343 4.761739 TCCGATGACTCTTGCATTTCTTTT 59.238 37.500 0.00 0.00 0.00 2.27
343 344 4.326826 TCCGATGACTCTTGCATTTCTTT 58.673 39.130 0.00 0.00 0.00 2.52
344 345 3.942829 TCCGATGACTCTTGCATTTCTT 58.057 40.909 0.00 0.00 0.00 2.52
345 346 3.616956 TCCGATGACTCTTGCATTTCT 57.383 42.857 0.00 0.00 0.00 2.52
346 347 4.685169 TTTCCGATGACTCTTGCATTTC 57.315 40.909 0.00 0.00 0.00 2.17
347 348 5.452078 TTTTTCCGATGACTCTTGCATTT 57.548 34.783 0.00 0.00 0.00 2.32
368 369 9.880157 ATTGCATATGTTCTTATCTTGCTTTTT 57.120 25.926 4.29 0.00 0.00 1.94
383 384 9.643652 CGTTGTTTTTGTTTTATTGCATATGTT 57.356 25.926 4.29 0.00 0.00 2.71
384 385 8.279103 CCGTTGTTTTTGTTTTATTGCATATGT 58.721 29.630 4.29 0.00 0.00 2.29
385 386 8.279103 ACCGTTGTTTTTGTTTTATTGCATATG 58.721 29.630 0.00 0.00 0.00 1.78
386 387 8.371770 ACCGTTGTTTTTGTTTTATTGCATAT 57.628 26.923 0.00 0.00 0.00 1.78
387 388 7.772332 ACCGTTGTTTTTGTTTTATTGCATA 57.228 28.000 0.00 0.00 0.00 3.14
388 389 6.670077 ACCGTTGTTTTTGTTTTATTGCAT 57.330 29.167 0.00 0.00 0.00 3.96
389 390 6.307155 CAACCGTTGTTTTTGTTTTATTGCA 58.693 32.000 2.87 0.00 30.42 4.08
390 391 5.226154 GCAACCGTTGTTTTTGTTTTATTGC 59.774 36.000 12.77 0.00 30.42 3.56
391 392 6.247374 GTGCAACCGTTGTTTTTGTTTTATTG 59.753 34.615 12.77 0.00 30.42 1.90
392 393 6.073222 TGTGCAACCGTTGTTTTTGTTTTATT 60.073 30.769 12.77 0.00 34.36 1.40
393 394 5.408604 TGTGCAACCGTTGTTTTTGTTTTAT 59.591 32.000 12.77 0.00 34.36 1.40
394 395 4.748102 TGTGCAACCGTTGTTTTTGTTTTA 59.252 33.333 12.77 0.00 34.36 1.52
395 396 3.560068 TGTGCAACCGTTGTTTTTGTTTT 59.440 34.783 12.77 0.00 34.36 2.43
396 397 3.131396 TGTGCAACCGTTGTTTTTGTTT 58.869 36.364 12.77 0.00 34.36 2.83
397 398 2.755650 TGTGCAACCGTTGTTTTTGTT 58.244 38.095 12.77 0.00 34.36 2.83
398 399 2.440539 TGTGCAACCGTTGTTTTTGT 57.559 40.000 12.77 0.00 34.36 2.83
399 400 3.795561 TTTGTGCAACCGTTGTTTTTG 57.204 38.095 12.77 0.00 34.36 2.44
400 401 5.149977 CAAATTTGTGCAACCGTTGTTTTT 58.850 33.333 12.77 2.46 34.36 1.94
401 402 4.214332 ACAAATTTGTGCAACCGTTGTTTT 59.786 33.333 22.71 0.00 40.49 2.43
402 403 3.748568 ACAAATTTGTGCAACCGTTGTTT 59.251 34.783 22.71 1.90 40.49 2.83
403 404 3.330267 ACAAATTTGTGCAACCGTTGTT 58.670 36.364 22.71 0.00 40.49 2.83
404 405 2.966050 ACAAATTTGTGCAACCGTTGT 58.034 38.095 22.71 0.00 40.49 3.32
405 406 5.006165 ACATTACAAATTTGTGCAACCGTTG 59.994 36.000 29.72 15.62 42.31 4.10
406 407 5.006165 CACATTACAAATTTGTGCAACCGTT 59.994 36.000 29.72 5.82 42.31 4.44
407 408 4.505922 CACATTACAAATTTGTGCAACCGT 59.494 37.500 29.72 16.09 42.31 4.83
408 409 5.004255 CACATTACAAATTTGTGCAACCG 57.996 39.130 29.72 15.56 42.31 4.44
414 415 6.251163 CGGTAGATGCACATTACAAATTTGTG 59.749 38.462 29.72 17.62 42.31 3.33
415 416 6.072175 ACGGTAGATGCACATTACAAATTTGT 60.072 34.615 25.99 25.99 44.86 2.83
416 417 6.321717 ACGGTAGATGCACATTACAAATTTG 58.678 36.000 16.67 16.67 0.00 2.32
417 418 6.509418 ACGGTAGATGCACATTACAAATTT 57.491 33.333 0.00 0.00 0.00 1.82
418 419 7.045416 TCTACGGTAGATGCACATTACAAATT 58.955 34.615 13.70 0.00 0.00 1.82
419 420 6.578944 TCTACGGTAGATGCACATTACAAAT 58.421 36.000 13.70 0.00 0.00 2.32
420 421 5.968254 TCTACGGTAGATGCACATTACAAA 58.032 37.500 13.70 0.00 0.00 2.83
421 422 5.585820 TCTACGGTAGATGCACATTACAA 57.414 39.130 13.70 0.00 0.00 2.41
422 423 5.784578 ATCTACGGTAGATGCACATTACA 57.215 39.130 25.68 0.00 43.59 2.41
423 424 8.583810 TTTAATCTACGGTAGATGCACATTAC 57.416 34.615 26.66 0.00 44.44 1.89
424 425 9.256477 CTTTTAATCTACGGTAGATGCACATTA 57.744 33.333 26.66 14.56 44.44 1.90
425 426 7.769044 ACTTTTAATCTACGGTAGATGCACATT 59.231 33.333 26.66 15.43 44.44 2.71
426 427 7.224753 CACTTTTAATCTACGGTAGATGCACAT 59.775 37.037 26.66 15.44 44.44 3.21
427 428 6.533723 CACTTTTAATCTACGGTAGATGCACA 59.466 38.462 26.66 13.34 44.44 4.57
428 429 6.509677 GCACTTTTAATCTACGGTAGATGCAC 60.510 42.308 26.66 10.43 44.44 4.57
429 430 5.522460 GCACTTTTAATCTACGGTAGATGCA 59.478 40.000 26.66 16.82 44.44 3.96
430 431 5.522460 TGCACTTTTAATCTACGGTAGATGC 59.478 40.000 26.66 23.94 44.44 3.91
431 432 6.757010 AGTGCACTTTTAATCTACGGTAGATG 59.243 38.462 26.66 17.52 44.44 2.90
433 434 6.097356 CAGTGCACTTTTAATCTACGGTAGA 58.903 40.000 18.94 19.38 39.50 2.59
434 435 5.220416 GCAGTGCACTTTTAATCTACGGTAG 60.220 44.000 18.94 8.91 0.00 3.18
435 436 4.628333 GCAGTGCACTTTTAATCTACGGTA 59.372 41.667 18.94 0.00 0.00 4.02
436 437 3.435671 GCAGTGCACTTTTAATCTACGGT 59.564 43.478 18.94 0.00 0.00 4.83
437 438 3.435327 TGCAGTGCACTTTTAATCTACGG 59.565 43.478 18.94 2.01 31.71 4.02
438 439 4.661993 TGCAGTGCACTTTTAATCTACG 57.338 40.909 18.94 2.59 31.71 3.51
439 440 6.538742 TCCTATGCAGTGCACTTTTAATCTAC 59.461 38.462 22.44 0.00 43.04 2.59
440 441 6.649155 TCCTATGCAGTGCACTTTTAATCTA 58.351 36.000 22.44 4.48 43.04 1.98
441 442 5.500234 TCCTATGCAGTGCACTTTTAATCT 58.500 37.500 22.44 3.34 43.04 2.40
442 443 5.818136 TCCTATGCAGTGCACTTTTAATC 57.182 39.130 22.44 2.99 43.04 1.75
443 444 6.588719 TTTCCTATGCAGTGCACTTTTAAT 57.411 33.333 22.44 10.75 43.04 1.40
444 445 6.264292 TCTTTTCCTATGCAGTGCACTTTTAA 59.736 34.615 22.44 9.68 43.04 1.52
445 446 5.767665 TCTTTTCCTATGCAGTGCACTTTTA 59.232 36.000 22.44 8.02 43.04 1.52
446 447 4.584325 TCTTTTCCTATGCAGTGCACTTTT 59.416 37.500 22.44 7.12 43.04 2.27
447 448 4.144297 TCTTTTCCTATGCAGTGCACTTT 58.856 39.130 22.44 7.54 43.04 2.66
448 449 3.754965 TCTTTTCCTATGCAGTGCACTT 58.245 40.909 22.44 8.39 43.04 3.16
449 450 3.423539 TCTTTTCCTATGCAGTGCACT 57.576 42.857 22.44 15.25 43.04 4.40
450 451 4.708726 ATTCTTTTCCTATGCAGTGCAC 57.291 40.909 22.44 9.40 43.04 4.57
451 452 6.832520 TTTATTCTTTTCCTATGCAGTGCA 57.167 33.333 22.22 22.22 44.86 4.57
452 453 6.698766 CCATTTATTCTTTTCCTATGCAGTGC 59.301 38.462 8.58 8.58 0.00 4.40
453 454 7.775120 ACCATTTATTCTTTTCCTATGCAGTG 58.225 34.615 0.00 0.00 0.00 3.66
454 455 7.961326 ACCATTTATTCTTTTCCTATGCAGT 57.039 32.000 0.00 0.00 0.00 4.40
455 456 8.469200 TGAACCATTTATTCTTTTCCTATGCAG 58.531 33.333 0.00 0.00 0.00 4.41
456 457 8.359875 TGAACCATTTATTCTTTTCCTATGCA 57.640 30.769 0.00 0.00 0.00 3.96
457 458 9.822185 AATGAACCATTTATTCTTTTCCTATGC 57.178 29.630 0.00 0.00 28.76 3.14
528 529 0.386838 GCCAGTCAGCTGTGCTTTTT 59.613 50.000 14.67 0.00 41.02 1.94
529 530 0.752743 TGCCAGTCAGCTGTGCTTTT 60.753 50.000 14.67 0.00 41.02 2.27
530 531 1.152902 TGCCAGTCAGCTGTGCTTT 60.153 52.632 14.67 0.00 41.02 3.51
531 532 1.600076 CTGCCAGTCAGCTGTGCTT 60.600 57.895 14.67 0.00 41.02 3.91
532 533 2.032223 CTGCCAGTCAGCTGTGCT 59.968 61.111 14.67 10.52 41.02 4.40
533 534 3.054503 CCTGCCAGTCAGCTGTGC 61.055 66.667 14.67 12.71 41.50 4.57
534 535 0.535780 TTTCCTGCCAGTCAGCTGTG 60.536 55.000 14.67 5.40 41.50 3.66
535 536 0.250640 CTTTCCTGCCAGTCAGCTGT 60.251 55.000 14.67 0.00 41.50 4.40
536 537 0.035881 TCTTTCCTGCCAGTCAGCTG 59.964 55.000 7.63 7.63 41.50 4.24
537 538 0.036022 GTCTTTCCTGCCAGTCAGCT 59.964 55.000 0.00 0.00 41.50 4.24
538 539 0.250467 TGTCTTTCCTGCCAGTCAGC 60.250 55.000 0.00 0.00 41.50 4.26
539 540 2.260844 TTGTCTTTCCTGCCAGTCAG 57.739 50.000 0.00 0.00 42.49 3.51
540 541 2.957402 ATTGTCTTTCCTGCCAGTCA 57.043 45.000 0.00 0.00 0.00 3.41
541 542 2.489722 GGAATTGTCTTTCCTGCCAGTC 59.510 50.000 0.00 0.00 41.69 3.51
542 543 2.158475 TGGAATTGTCTTTCCTGCCAGT 60.158 45.455 4.96 0.00 44.63 4.00
543 544 2.490903 CTGGAATTGTCTTTCCTGCCAG 59.509 50.000 0.00 0.00 44.63 4.85
544 545 2.158475 ACTGGAATTGTCTTTCCTGCCA 60.158 45.455 9.26 0.00 44.32 4.92
545 546 2.489722 GACTGGAATTGTCTTTCCTGCC 59.510 50.000 9.26 0.00 44.32 4.85
546 547 2.160417 CGACTGGAATTGTCTTTCCTGC 59.840 50.000 9.26 3.55 44.32 4.85
547 548 3.433615 GTCGACTGGAATTGTCTTTCCTG 59.566 47.826 8.70 8.13 44.63 3.86
548 549 3.325135 AGTCGACTGGAATTGTCTTTCCT 59.675 43.478 19.30 0.00 44.63 3.36
549 550 3.433615 CAGTCGACTGGAATTGTCTTTCC 59.566 47.826 33.36 0.00 44.60 3.13
550 551 4.307432 TCAGTCGACTGGAATTGTCTTTC 58.693 43.478 37.82 0.00 43.91 2.62
551 552 4.336889 TCAGTCGACTGGAATTGTCTTT 57.663 40.909 37.82 2.40 43.91 2.52
552 553 4.543590 ATCAGTCGACTGGAATTGTCTT 57.456 40.909 37.82 13.98 43.91 3.01
553 554 5.221342 GGATATCAGTCGACTGGAATTGTCT 60.221 44.000 37.82 18.13 43.91 3.41
554 555 4.985409 GGATATCAGTCGACTGGAATTGTC 59.015 45.833 37.82 26.25 43.91 3.18
555 556 4.405680 TGGATATCAGTCGACTGGAATTGT 59.594 41.667 37.82 21.53 43.91 2.71
556 557 4.948847 TGGATATCAGTCGACTGGAATTG 58.051 43.478 37.82 18.23 43.91 2.32
557 558 4.502259 GCTGGATATCAGTCGACTGGAATT 60.502 45.833 37.82 24.35 45.08 2.17
558 559 3.006323 GCTGGATATCAGTCGACTGGAAT 59.994 47.826 37.82 30.57 45.08 3.01
559 560 2.362397 GCTGGATATCAGTCGACTGGAA 59.638 50.000 37.82 27.90 45.08 3.53
560 561 1.957177 GCTGGATATCAGTCGACTGGA 59.043 52.381 37.82 28.16 45.08 3.86
561 562 1.683385 TGCTGGATATCAGTCGACTGG 59.317 52.381 37.82 23.85 45.08 4.00
562 563 3.443099 TTGCTGGATATCAGTCGACTG 57.557 47.619 34.76 34.76 45.08 3.51
563 564 4.343526 AGATTTGCTGGATATCAGTCGACT 59.656 41.667 13.58 13.58 45.08 4.18
564 565 4.447054 CAGATTTGCTGGATATCAGTCGAC 59.553 45.833 7.70 7.70 45.08 4.20
565 566 4.625028 CAGATTTGCTGGATATCAGTCGA 58.375 43.478 4.83 0.00 45.08 4.20
566 567 4.986875 CAGATTTGCTGGATATCAGTCG 57.013 45.455 4.83 0.00 45.08 4.18
592 593 8.491331 AAAGCACATACAAGAAACACAAAAAT 57.509 26.923 0.00 0.00 0.00 1.82
607 608 2.352715 GCCCAACCAAGAAAGCACATAC 60.353 50.000 0.00 0.00 0.00 2.39
627 628 9.638239 TTATTGACAAAAATGATTGAAGTAGGC 57.362 29.630 0.00 0.00 34.38 3.93
656 658 7.042791 GCTTTTTGCAGAAACAACAATTAGCTA 60.043 33.333 0.00 0.00 42.31 3.32
674 676 4.441495 GGAAGGGTGGTATATGCTTTTTGC 60.441 45.833 0.00 0.00 43.25 3.68
676 678 4.941713 TGGAAGGGTGGTATATGCTTTTT 58.058 39.130 0.00 0.00 0.00 1.94
682 684 8.299990 TGTTTATTTTGGAAGGGTGGTATATG 57.700 34.615 0.00 0.00 0.00 1.78
688 690 8.299990 TGTATATGTTTATTTTGGAAGGGTGG 57.700 34.615 0.00 0.00 0.00 4.61
691 693 8.977412 AGGTTGTATATGTTTATTTTGGAAGGG 58.023 33.333 0.00 0.00 0.00 3.95
692 694 9.801873 CAGGTTGTATATGTTTATTTTGGAAGG 57.198 33.333 0.00 0.00 0.00 3.46
693 695 9.301153 GCAGGTTGTATATGTTTATTTTGGAAG 57.699 33.333 0.00 0.00 0.00 3.46
694 696 9.030452 AGCAGGTTGTATATGTTTATTTTGGAA 57.970 29.630 0.00 0.00 0.00 3.53
695 697 8.588290 AGCAGGTTGTATATGTTTATTTTGGA 57.412 30.769 0.00 0.00 0.00 3.53
704 706 9.958180 TGCATATATTAGCAGGTTGTATATGTT 57.042 29.630 16.98 0.00 37.73 2.71
709 711 8.246180 GCAAATGCATATATTAGCAGGTTGTAT 58.754 33.333 18.74 0.00 44.94 2.29
710 712 7.592938 GCAAATGCATATATTAGCAGGTTGTA 58.407 34.615 18.74 0.00 44.94 2.41
711 713 6.449698 GCAAATGCATATATTAGCAGGTTGT 58.550 36.000 18.74 1.00 44.94 3.32
712 714 6.939551 GCAAATGCATATATTAGCAGGTTG 57.060 37.500 0.00 16.07 44.94 3.77
742 744 5.908831 AGGTGTGGTGGAGGTATGAATATTA 59.091 40.000 0.00 0.00 0.00 0.98
754 756 4.559862 AATTAGAGAAGGTGTGGTGGAG 57.440 45.455 0.00 0.00 0.00 3.86
759 761 8.210946 TGGATAATGTAATTAGAGAAGGTGTGG 58.789 37.037 0.00 0.00 42.97 4.17
783 785 5.241506 AGTGTTGTCATAAGATTGTTGGTGG 59.758 40.000 0.00 0.00 0.00 4.61
786 788 6.317789 ACAGTGTTGTCATAAGATTGTTGG 57.682 37.500 0.00 0.00 29.46 3.77
836 840 7.063898 CACGATCTCTTTCAGCTTTCTTTATCA 59.936 37.037 0.00 0.00 0.00 2.15
837 841 7.064016 ACACGATCTCTTTCAGCTTTCTTTATC 59.936 37.037 0.00 0.00 0.00 1.75
838 842 6.876257 ACACGATCTCTTTCAGCTTTCTTTAT 59.124 34.615 0.00 0.00 0.00 1.40
839 843 6.146184 CACACGATCTCTTTCAGCTTTCTTTA 59.854 38.462 0.00 0.00 0.00 1.85
955 974 5.154222 GGTTTTGAAATGTGTGCTACTAGC 58.846 41.667 0.61 0.61 42.82 3.42
973 992 2.085320 GCGTTTGGGTTTTTGGGTTTT 58.915 42.857 0.00 0.00 0.00 2.43
1090 1111 3.459063 GTCGAAGGGGACGAGGGG 61.459 72.222 0.00 0.00 40.37 4.79
1099 1120 3.110178 GTTGCCGTCGTCGAAGGG 61.110 66.667 25.46 17.18 39.71 3.95
1101 1122 2.355363 TGGTTGCCGTCGTCGAAG 60.355 61.111 2.98 0.00 39.71 3.79
1317 1338 2.930019 TGGTGGTGGAGCAGGAGG 60.930 66.667 0.00 0.00 0.00 4.30
1424 1451 4.838152 CCTCGTCCATGGCCACGG 62.838 72.222 21.82 12.95 36.64 4.94
1804 1843 1.278537 TCCATGAGTGGTCTGCATGA 58.721 50.000 0.00 0.00 46.16 3.07
1818 1857 2.277969 GCAGTGAGTGACAGATCCATG 58.722 52.381 0.00 0.00 0.00 3.66
1822 1861 1.080995 GCGGCAGTGAGTGACAGATC 61.081 60.000 0.00 0.00 30.77 2.75
1823 1862 1.079543 GCGGCAGTGAGTGACAGAT 60.080 57.895 0.00 0.00 30.77 2.90
1825 1864 1.301244 AAGCGGCAGTGAGTGACAG 60.301 57.895 1.45 0.00 30.77 3.51
1827 1866 0.319555 TACAAGCGGCAGTGAGTGAC 60.320 55.000 1.45 0.00 0.00 3.67
1830 1869 1.067776 GTAGTACAAGCGGCAGTGAGT 60.068 52.381 1.45 0.00 0.00 3.41
1831 1870 1.630148 GTAGTACAAGCGGCAGTGAG 58.370 55.000 1.45 0.00 0.00 3.51
1859 1898 7.217825 GCGGACGTGATTATAATTAGTAGTAGC 59.782 40.741 0.00 3.19 0.00 3.58
1944 1988 6.542005 CCACACACAATCACCAGCTAATTATA 59.458 38.462 0.00 0.00 0.00 0.98
1945 1989 5.357878 CCACACACAATCACCAGCTAATTAT 59.642 40.000 0.00 0.00 0.00 1.28
1971 2015 8.190122 CAGGCAGCAACAATTATTTGATACTAA 58.810 33.333 4.42 0.00 36.64 2.24
1991 2035 2.783135 ACACACAGATTAACCAGGCAG 58.217 47.619 0.00 0.00 0.00 4.85
2084 2179 4.051922 GTGGTCACTCAAAGAGTACACAG 58.948 47.826 16.78 1.43 41.37 3.66
2237 2332 5.321927 ACTTCACCCGTTCCATAATTCTTT 58.678 37.500 0.00 0.00 0.00 2.52
2254 2349 4.321974 CCCTTGGCTTATTTTGGACTTCAC 60.322 45.833 0.00 0.00 0.00 3.18
2381 2722 4.338964 TCATGTACAATGGAATCCATGCAC 59.661 41.667 16.52 13.66 44.40 4.57
2435 2776 1.810030 GGCCTCCGTAAAGAGCACG 60.810 63.158 0.00 0.00 39.10 5.34
2439 2780 1.739371 CGAAAGGGCCTCCGTAAAGAG 60.739 57.143 6.46 0.00 38.33 2.85
2446 2787 2.499685 CCTACGAAAGGGCCTCCG 59.500 66.667 21.75 21.75 42.32 4.63
2492 2833 8.966069 AACTATTCTCTAACTTGATAAAGGGC 57.034 34.615 0.00 0.00 0.00 5.19
2620 2964 8.492673 TTTATGCTGTCGAATTCTAGAACAAT 57.507 30.769 7.48 0.00 0.00 2.71
2658 3002 3.544651 CACTATTGCACACACTTGTTCG 58.455 45.455 0.00 0.00 31.66 3.95
2741 3085 8.938801 AAGACATATTAATTATCATGGTGCCA 57.061 30.769 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.