Multiple sequence alignment - TraesCS2D01G017400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G017400 chr2D 100.000 4478 0 0 1 4478 8349930 8345453 0.000000e+00 8270.0
1 TraesCS2D01G017400 chr2D 80.734 2481 360 65 1082 3479 469984124 469986569 0.000000e+00 1825.0
2 TraesCS2D01G017400 chr2D 79.635 2578 400 74 1085 3574 599926510 599929050 0.000000e+00 1736.0
3 TraesCS2D01G017400 chr2D 76.637 886 184 21 2572 3447 380079659 380080531 6.780000e-128 468.0
4 TraesCS2D01G017400 chr2B 95.485 3322 105 16 675 3965 4754630 4751323 0.000000e+00 5262.0
5 TraesCS2D01G017400 chr2B 79.232 2682 413 87 991 3574 729766586 729769221 0.000000e+00 1735.0
6 TraesCS2D01G017400 chr2B 79.944 1800 268 49 1082 2822 548609597 548611362 0.000000e+00 1238.0
7 TraesCS2D01G017400 chr2B 94.419 430 13 6 4049 4478 4751101 4750683 0.000000e+00 651.0
8 TraesCS2D01G017400 chr2B 76.810 884 186 17 2572 3447 451455590 451456462 3.130000e-131 479.0
9 TraesCS2D01G017400 chr2B 95.455 44 2 0 625 668 4754699 4754656 2.230000e-08 71.3
10 TraesCS2D01G017400 chr2A 79.415 2599 411 75 1064 3574 733628969 733631531 0.000000e+00 1722.0
11 TraesCS2D01G017400 chr2A 94.516 620 28 3 1 614 37115450 37114831 0.000000e+00 952.0
12 TraesCS2D01G017400 chr2A 79.478 1418 205 45 1082 2447 611296244 611297627 0.000000e+00 928.0
13 TraesCS2D01G017400 chr2A 76.749 886 183 20 2572 3447 515303896 515304768 1.460000e-129 473.0
14 TraesCS2D01G017400 chr2A 90.671 343 22 6 4137 4478 7409221 7408888 8.840000e-122 448.0
15 TraesCS2D01G017400 chr2A 93.296 179 7 1 673 846 7409478 7409300 4.440000e-65 259.0
16 TraesCS2D01G017400 chr2A 93.056 72 3 2 838 909 7409289 7409220 2.200000e-18 104.0
17 TraesCS2D01G017400 chr2A 97.436 39 1 0 625 663 7409545 7409507 2.890000e-07 67.6
18 TraesCS2D01G017400 chr5A 78.740 2587 422 75 1082 3576 12194136 12191586 0.000000e+00 1613.0
19 TraesCS2D01G017400 chr5B 78.646 2585 420 77 1086 3576 13776049 13773503 0.000000e+00 1594.0
20 TraesCS2D01G017400 chr5B 77.905 2453 419 56 1082 3456 549548071 549550478 0.000000e+00 1413.0
21 TraesCS2D01G017400 chr1A 78.483 2491 416 64 1082 3479 8144422 8141959 0.000000e+00 1520.0
22 TraesCS2D01G017400 chr1A 78.043 2555 415 73 989 3449 8327135 8329637 0.000000e+00 1476.0
23 TraesCS2D01G017400 chr1A 77.983 2489 423 71 1082 3479 7834763 7837217 0.000000e+00 1445.0
24 TraesCS2D01G017400 chr1D 77.957 2604 431 85 1080 3583 6721515 6718955 0.000000e+00 1496.0
25 TraesCS2D01G017400 chr1D 77.739 2592 454 74 1080 3576 6913245 6915808 0.000000e+00 1476.0
26 TraesCS2D01G017400 chr1D 77.985 2471 406 68 1082 3456 6898534 6900962 0.000000e+00 1423.0
27 TraesCS2D01G017400 chr1D 95.793 618 23 1 1 615 481102598 481101981 0.000000e+00 994.0
28 TraesCS2D01G017400 chr1D 92.593 621 38 4 1 614 1054147 1053528 0.000000e+00 885.0
29 TraesCS2D01G017400 chr1B 77.404 2673 457 91 989 3563 9161789 9164412 0.000000e+00 1454.0
30 TraesCS2D01G017400 chr1B 77.672 2620 403 99 1082 3570 548199812 548197244 0.000000e+00 1430.0
31 TraesCS2D01G017400 chr1B 77.315 2592 462 79 1080 3576 8819839 8817279 0.000000e+00 1413.0
32 TraesCS2D01G017400 chr1B 76.225 2591 497 74 1120 3629 8261437 8258885 0.000000e+00 1262.0
33 TraesCS2D01G017400 chr1B 76.593 2119 360 67 1082 3129 9175457 9177510 0.000000e+00 1040.0
34 TraesCS2D01G017400 chr1B 73.755 743 145 28 989 1697 9281260 9281986 3.460000e-61 246.0
35 TraesCS2D01G017400 chr3B 77.137 2410 445 69 1082 3447 805337592 805339939 0.000000e+00 1301.0
36 TraesCS2D01G017400 chr5D 76.367 2268 413 66 992 3175 447105732 447107960 0.000000e+00 1105.0
37 TraesCS2D01G017400 chr5D 81.323 1285 190 30 2337 3576 18085125 18086404 0.000000e+00 998.0
38 TraesCS2D01G017400 chr5D 75.910 1291 231 44 1086 2331 18083760 18085015 4.990000e-164 588.0
39 TraesCS2D01G017400 chr7D 95.153 619 24 3 1 614 544362438 544363055 0.000000e+00 972.0
40 TraesCS2D01G017400 chr7D 94.272 611 24 2 1 600 578776698 578777308 0.000000e+00 924.0
41 TraesCS2D01G017400 chr7D 76.253 838 189 10 2543 3375 543625659 543624827 1.910000e-118 436.0
42 TraesCS2D01G017400 chr3D 94.318 616 31 2 2 614 22237734 22237120 0.000000e+00 941.0
43 TraesCS2D01G017400 chr3D 93.087 622 35 4 1 614 22973268 22973889 0.000000e+00 904.0
44 TraesCS2D01G017400 chrUn 93.387 620 35 5 1 614 46095884 46096503 0.000000e+00 913.0
45 TraesCS2D01G017400 chr6D 92.581 620 39 5 1 616 367503474 367504090 0.000000e+00 883.0
46 TraesCS2D01G017400 chr7A 75.699 823 190 10 2543 3360 625615737 625614920 1.940000e-108 403.0
47 TraesCS2D01G017400 chr7A 74.544 931 215 20 2528 3447 625630541 625629622 1.950000e-103 387.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G017400 chr2D 8345453 8349930 4477 True 8270.000000 8270 100.000000 1 4478 1 chr2D.!!$R1 4477
1 TraesCS2D01G017400 chr2D 469984124 469986569 2445 False 1825.000000 1825 80.734000 1082 3479 1 chr2D.!!$F2 2397
2 TraesCS2D01G017400 chr2D 599926510 599929050 2540 False 1736.000000 1736 79.635000 1085 3574 1 chr2D.!!$F3 2489
3 TraesCS2D01G017400 chr2D 380079659 380080531 872 False 468.000000 468 76.637000 2572 3447 1 chr2D.!!$F1 875
4 TraesCS2D01G017400 chr2B 4750683 4754699 4016 True 1994.766667 5262 95.119667 625 4478 3 chr2B.!!$R1 3853
5 TraesCS2D01G017400 chr2B 729766586 729769221 2635 False 1735.000000 1735 79.232000 991 3574 1 chr2B.!!$F3 2583
6 TraesCS2D01G017400 chr2B 548609597 548611362 1765 False 1238.000000 1238 79.944000 1082 2822 1 chr2B.!!$F2 1740
7 TraesCS2D01G017400 chr2B 451455590 451456462 872 False 479.000000 479 76.810000 2572 3447 1 chr2B.!!$F1 875
8 TraesCS2D01G017400 chr2A 733628969 733631531 2562 False 1722.000000 1722 79.415000 1064 3574 1 chr2A.!!$F3 2510
9 TraesCS2D01G017400 chr2A 37114831 37115450 619 True 952.000000 952 94.516000 1 614 1 chr2A.!!$R1 613
10 TraesCS2D01G017400 chr2A 611296244 611297627 1383 False 928.000000 928 79.478000 1082 2447 1 chr2A.!!$F2 1365
11 TraesCS2D01G017400 chr2A 515303896 515304768 872 False 473.000000 473 76.749000 2572 3447 1 chr2A.!!$F1 875
12 TraesCS2D01G017400 chr2A 7408888 7409545 657 True 219.650000 448 93.614750 625 4478 4 chr2A.!!$R2 3853
13 TraesCS2D01G017400 chr5A 12191586 12194136 2550 True 1613.000000 1613 78.740000 1082 3576 1 chr5A.!!$R1 2494
14 TraesCS2D01G017400 chr5B 13773503 13776049 2546 True 1594.000000 1594 78.646000 1086 3576 1 chr5B.!!$R1 2490
15 TraesCS2D01G017400 chr5B 549548071 549550478 2407 False 1413.000000 1413 77.905000 1082 3456 1 chr5B.!!$F1 2374
16 TraesCS2D01G017400 chr1A 8141959 8144422 2463 True 1520.000000 1520 78.483000 1082 3479 1 chr1A.!!$R1 2397
17 TraesCS2D01G017400 chr1A 8327135 8329637 2502 False 1476.000000 1476 78.043000 989 3449 1 chr1A.!!$F2 2460
18 TraesCS2D01G017400 chr1A 7834763 7837217 2454 False 1445.000000 1445 77.983000 1082 3479 1 chr1A.!!$F1 2397
19 TraesCS2D01G017400 chr1D 6718955 6721515 2560 True 1496.000000 1496 77.957000 1080 3583 1 chr1D.!!$R2 2503
20 TraesCS2D01G017400 chr1D 6913245 6915808 2563 False 1476.000000 1476 77.739000 1080 3576 1 chr1D.!!$F2 2496
21 TraesCS2D01G017400 chr1D 6898534 6900962 2428 False 1423.000000 1423 77.985000 1082 3456 1 chr1D.!!$F1 2374
22 TraesCS2D01G017400 chr1D 481101981 481102598 617 True 994.000000 994 95.793000 1 615 1 chr1D.!!$R3 614
23 TraesCS2D01G017400 chr1D 1053528 1054147 619 True 885.000000 885 92.593000 1 614 1 chr1D.!!$R1 613
24 TraesCS2D01G017400 chr1B 9161789 9164412 2623 False 1454.000000 1454 77.404000 989 3563 1 chr1B.!!$F1 2574
25 TraesCS2D01G017400 chr1B 548197244 548199812 2568 True 1430.000000 1430 77.672000 1082 3570 1 chr1B.!!$R3 2488
26 TraesCS2D01G017400 chr1B 8817279 8819839 2560 True 1413.000000 1413 77.315000 1080 3576 1 chr1B.!!$R2 2496
27 TraesCS2D01G017400 chr1B 8258885 8261437 2552 True 1262.000000 1262 76.225000 1120 3629 1 chr1B.!!$R1 2509
28 TraesCS2D01G017400 chr1B 9175457 9177510 2053 False 1040.000000 1040 76.593000 1082 3129 1 chr1B.!!$F2 2047
29 TraesCS2D01G017400 chr1B 9281260 9281986 726 False 246.000000 246 73.755000 989 1697 1 chr1B.!!$F3 708
30 TraesCS2D01G017400 chr3B 805337592 805339939 2347 False 1301.000000 1301 77.137000 1082 3447 1 chr3B.!!$F1 2365
31 TraesCS2D01G017400 chr5D 447105732 447107960 2228 False 1105.000000 1105 76.367000 992 3175 1 chr5D.!!$F1 2183
32 TraesCS2D01G017400 chr5D 18083760 18086404 2644 False 793.000000 998 78.616500 1086 3576 2 chr5D.!!$F2 2490
33 TraesCS2D01G017400 chr7D 544362438 544363055 617 False 972.000000 972 95.153000 1 614 1 chr7D.!!$F1 613
34 TraesCS2D01G017400 chr7D 578776698 578777308 610 False 924.000000 924 94.272000 1 600 1 chr7D.!!$F2 599
35 TraesCS2D01G017400 chr7D 543624827 543625659 832 True 436.000000 436 76.253000 2543 3375 1 chr7D.!!$R1 832
36 TraesCS2D01G017400 chr3D 22237120 22237734 614 True 941.000000 941 94.318000 2 614 1 chr3D.!!$R1 612
37 TraesCS2D01G017400 chr3D 22973268 22973889 621 False 904.000000 904 93.087000 1 614 1 chr3D.!!$F1 613
38 TraesCS2D01G017400 chrUn 46095884 46096503 619 False 913.000000 913 93.387000 1 614 1 chrUn.!!$F1 613
39 TraesCS2D01G017400 chr6D 367503474 367504090 616 False 883.000000 883 92.581000 1 616 1 chr6D.!!$F1 615
40 TraesCS2D01G017400 chr7A 625614920 625615737 817 True 403.000000 403 75.699000 2543 3360 1 chr7A.!!$R1 817
41 TraesCS2D01G017400 chr7A 625629622 625630541 919 True 387.000000 387 74.544000 2528 3447 1 chr7A.!!$R2 919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 615 0.179468 AAGCATTACACCCGGCGTAT 59.821 50.0 6.01 0.0 0.00 3.06 F
1317 1449 0.389948 CCGAGCTCCACCTAACACAC 60.390 60.0 8.47 0.0 0.00 3.82 F
2003 2210 0.536233 AATGGCACTGCACGTGGTAA 60.536 50.0 18.88 0.0 43.97 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2210 0.037326 ATCACAGAATGGACGTGCGT 60.037 50.0 1.6 0.0 43.62 5.24 R
3159 3541 2.027100 ACCTGAATTTCTCCTTCCCGAC 60.027 50.0 0.0 0.0 0.00 4.79 R
3817 4267 0.030235 GGTGTTTTTCAGTGGACGCC 59.970 55.0 0.0 0.0 35.76 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 83 0.457851 TTGTGCCACAACTTTTCCGG 59.542 50.000 6.08 0.00 32.34 5.14
154 157 2.092914 GCTATGTAAAGTGTCAGCCCCT 60.093 50.000 0.00 0.00 0.00 4.79
225 228 5.838529 TCTCGGCAAAGATATCGTCATTTA 58.161 37.500 0.00 0.00 0.00 1.40
226 229 6.277605 TCTCGGCAAAGATATCGTCATTTAA 58.722 36.000 0.00 0.00 0.00 1.52
339 358 1.543358 TGTTGCATATGCTTTGCCGAA 59.457 42.857 27.13 9.55 42.66 4.30
498 518 2.548057 GACGGCAAAGATGTCAGTTTGA 59.452 45.455 12.53 0.00 35.99 2.69
499 519 2.948979 ACGGCAAAGATGTCAGTTTGAA 59.051 40.909 12.53 0.00 35.99 2.69
576 596 2.216940 CGTGTTTTAGCACTCGACGAAA 59.783 45.455 0.00 0.00 36.06 3.46
595 615 0.179468 AAGCATTACACCCGGCGTAT 59.821 50.000 6.01 0.00 0.00 3.06
616 636 8.276325 GCGTATATGAAAATTCCAGTAGTGAAG 58.724 37.037 0.00 0.00 0.00 3.02
617 637 8.765219 CGTATATGAAAATTCCAGTAGTGAAGG 58.235 37.037 0.00 0.00 0.00 3.46
618 638 5.904362 ATGAAAATTCCAGTAGTGAAGGC 57.096 39.130 0.00 0.00 0.00 4.35
619 639 4.079253 TGAAAATTCCAGTAGTGAAGGCC 58.921 43.478 0.00 0.00 0.00 5.19
620 640 2.808906 AATTCCAGTAGTGAAGGCCC 57.191 50.000 0.00 0.00 0.00 5.80
621 641 1.668826 ATTCCAGTAGTGAAGGCCCA 58.331 50.000 0.00 0.00 0.00 5.36
622 642 1.668826 TTCCAGTAGTGAAGGCCCAT 58.331 50.000 0.00 0.00 0.00 4.00
623 643 1.668826 TCCAGTAGTGAAGGCCCATT 58.331 50.000 0.00 0.00 0.00 3.16
659 679 0.967380 AAAGGGCCATGGAAGCTTCG 60.967 55.000 18.40 7.50 0.00 3.79
663 683 2.817423 GCCATGGAAGCTTCGCTCG 61.817 63.158 18.40 8.82 38.25 5.03
668 688 2.448705 GGAAGCTTCGCTCGCTCAC 61.449 63.158 19.91 0.00 38.25 3.51
669 689 1.445238 GAAGCTTCGCTCGCTCACT 60.445 57.895 11.40 0.00 38.25 3.41
670 690 1.409982 GAAGCTTCGCTCGCTCACTC 61.410 60.000 11.40 0.00 38.25 3.51
671 691 2.827383 AAGCTTCGCTCGCTCACTCC 62.827 60.000 0.00 0.00 38.25 3.85
751 790 6.715344 TTTTGTTGACACATATAGGACGTC 57.285 37.500 7.13 7.13 31.06 4.34
752 791 5.394224 TTGTTGACACATATAGGACGTCA 57.606 39.130 18.91 9.32 34.92 4.35
820 864 6.043411 ACTATGTAGCCATTCGTCTCTTTTC 58.957 40.000 0.00 0.00 32.29 2.29
885 948 1.295792 TGATACGCTCCGCCATTTTC 58.704 50.000 0.00 0.00 0.00 2.29
918 981 1.349357 ACACTTCTTCTGCCTTCTCCC 59.651 52.381 0.00 0.00 0.00 4.30
923 986 1.072331 TCTTCTGCCTTCTCCCAACAC 59.928 52.381 0.00 0.00 0.00 3.32
943 1006 1.021390 CACAACATCCCTCCAGCGTC 61.021 60.000 0.00 0.00 0.00 5.19
962 1025 3.241773 CGTCAACACATTACTCATGCTCG 60.242 47.826 0.00 0.00 36.14 5.03
977 1040 0.885196 GCTCGTCTCCTCACTTGTCT 59.115 55.000 0.00 0.00 0.00 3.41
1045 1108 0.996583 ACTTCTCCTCGTCTCCTCCT 59.003 55.000 0.00 0.00 0.00 3.69
1047 1110 2.021457 CTTCTCCTCGTCTCCTCCTTC 58.979 57.143 0.00 0.00 0.00 3.46
1237 1369 2.218603 GGTACCTTGGCATATGGTTCG 58.781 52.381 4.06 0.00 37.87 3.95
1263 1395 4.566987 AGATTCCGGTTTTCACTACTGTC 58.433 43.478 0.00 0.00 0.00 3.51
1271 1403 3.485463 TTTCACTACTGTCTGGGTTGG 57.515 47.619 0.00 0.00 0.00 3.77
1317 1449 0.389948 CCGAGCTCCACCTAACACAC 60.390 60.000 8.47 0.00 0.00 3.82
1579 1759 4.223032 ACAAGATCACCGGTTTGAGTAGAT 59.777 41.667 20.76 11.74 0.00 1.98
1590 1770 4.384647 GGTTTGAGTAGATTGGGCATCTCT 60.385 45.833 0.00 0.00 41.80 3.10
1836 2034 5.801531 ACTACATGTACACTTCACCTGAA 57.198 39.130 0.08 0.00 0.00 3.02
2003 2210 0.536233 AATGGCACTGCACGTGGTAA 60.536 50.000 18.88 0.00 43.97 2.85
2004 2211 1.234615 ATGGCACTGCACGTGGTAAC 61.235 55.000 18.88 0.18 43.97 2.50
2347 2683 8.497554 GCATTGAAATTTTTGCTGAAGATGTTA 58.502 29.630 12.02 0.00 32.41 2.41
3159 3541 4.104776 GCATGGTATTGTTGGAAATCGTG 58.895 43.478 0.00 0.00 0.00 4.35
3198 3598 6.109156 TCAGGTGAAGAATACACTAGCAAA 57.891 37.500 0.00 0.00 38.20 3.68
3578 4025 6.387041 AAGAAAGGCAAACTTGTAGTTACC 57.613 37.500 0.00 0.00 37.47 2.85
3590 4037 4.699925 TGTAGTTACCAAACTGCCTCTT 57.300 40.909 1.11 0.00 45.63 2.85
3619 4066 8.546083 TTTCAATGGCCAATTATAGTAACCAT 57.454 30.769 10.96 0.00 38.03 3.55
3638 4085 0.037590 TGCATTGTAGGGGCGTCTTT 59.962 50.000 0.00 0.00 0.00 2.52
3649 4096 1.294659 GGCGTCTTTGTCAGCAGGAG 61.295 60.000 0.00 0.00 0.00 3.69
3653 4100 0.687354 TCTTTGTCAGCAGGAGGGAC 59.313 55.000 0.00 0.00 0.00 4.46
3671 4118 2.488153 GGACACACCAAGCTATTTCCAC 59.512 50.000 0.00 0.00 38.79 4.02
3675 4122 1.131126 CACCAAGCTATTTCCACTGCG 59.869 52.381 0.00 0.00 0.00 5.18
3678 4125 0.322456 AAGCTATTTCCACTGCGGCA 60.322 50.000 1.29 1.29 33.14 5.69
3685 4135 3.803082 CCACTGCGGCATCAACGG 61.803 66.667 1.75 0.00 0.00 4.44
3717 4167 2.332063 TACAGGCTGAAGCTAATGCC 57.668 50.000 23.66 13.80 45.21 4.40
3746 4196 2.441750 TGGTTTCTGAAGTAGCCAAGGT 59.558 45.455 0.00 0.00 0.00 3.50
3770 4220 6.315144 GTGCTGAACCTTAACAAACCAAATTT 59.685 34.615 0.00 0.00 0.00 1.82
3778 4228 9.594478 ACCTTAACAAACCAAATTTCTTAACAG 57.406 29.630 0.00 0.00 0.00 3.16
3795 4245 8.402798 TCTTAACAGATAATCAAGTTTTGGCA 57.597 30.769 0.00 0.00 0.00 4.92
3797 4247 6.899393 AACAGATAATCAAGTTTTGGCAGA 57.101 33.333 0.00 0.00 0.00 4.26
3814 4264 0.672342 AGAAGCAGGCAAGCAACAAG 59.328 50.000 4.78 0.00 36.85 3.16
3815 4265 0.670162 GAAGCAGGCAAGCAACAAGA 59.330 50.000 4.78 0.00 36.85 3.02
3817 4267 0.672342 AGCAGGCAAGCAACAAGAAG 59.328 50.000 4.78 0.00 36.85 2.85
3830 4280 1.134220 ACAAGAAGGCGTCCACTGAAA 60.134 47.619 0.00 0.00 0.00 2.69
3871 4321 6.539826 CAGACCTGCACTTAATACATTCATCA 59.460 38.462 0.00 0.00 0.00 3.07
3876 4326 6.851609 TGCACTTAATACATTCATCAACCAC 58.148 36.000 0.00 0.00 0.00 4.16
3883 4333 6.662414 ATACATTCATCAACCACAGTAACG 57.338 37.500 0.00 0.00 0.00 3.18
3941 4391 2.171237 ACAGCAAGATAGCACATAGGCA 59.829 45.455 0.00 0.00 36.85 4.75
3972 4426 9.333497 CAGGATGATTTACACATTTATAATGCG 57.667 33.333 0.00 0.00 39.69 4.73
3974 4428 9.117145 GGATGATTTACACATTTATAATGCGTG 57.883 33.333 3.93 7.51 0.00 5.34
3975 4429 9.877137 GATGATTTACACATTTATAATGCGTGA 57.123 29.630 13.40 0.00 0.00 4.35
3976 4430 9.882996 ATGATTTACACATTTATAATGCGTGAG 57.117 29.630 13.40 1.94 0.00 3.51
3977 4431 8.341903 TGATTTACACATTTATAATGCGTGAGG 58.658 33.333 13.40 0.00 0.00 3.86
3978 4432 7.618502 TTTACACATTTATAATGCGTGAGGT 57.381 32.000 13.40 6.05 0.00 3.85
3979 4433 7.618502 TTACACATTTATAATGCGTGAGGTT 57.381 32.000 13.40 0.00 0.00 3.50
3980 4434 5.879237 ACACATTTATAATGCGTGAGGTTG 58.121 37.500 13.40 0.00 0.00 3.77
3981 4435 5.414454 ACACATTTATAATGCGTGAGGTTGT 59.586 36.000 13.40 0.00 0.00 3.32
3982 4436 6.596106 ACACATTTATAATGCGTGAGGTTGTA 59.404 34.615 13.40 0.00 0.00 2.41
3983 4437 7.282224 ACACATTTATAATGCGTGAGGTTGTAT 59.718 33.333 13.40 0.00 0.00 2.29
3984 4438 8.128582 CACATTTATAATGCGTGAGGTTGTATT 58.871 33.333 0.00 0.00 0.00 1.89
3985 4439 8.682710 ACATTTATAATGCGTGAGGTTGTATTT 58.317 29.630 0.00 0.00 0.00 1.40
3986 4440 9.515020 CATTTATAATGCGTGAGGTTGTATTTT 57.485 29.630 0.00 0.00 0.00 1.82
3987 4441 9.730420 ATTTATAATGCGTGAGGTTGTATTTTC 57.270 29.630 0.00 0.00 0.00 2.29
3989 4443 3.889196 TGCGTGAGGTTGTATTTTCAC 57.111 42.857 0.00 0.00 37.24 3.18
3990 4444 3.472652 TGCGTGAGGTTGTATTTTCACT 58.527 40.909 2.52 0.00 38.18 3.41
3991 4445 3.880490 TGCGTGAGGTTGTATTTTCACTT 59.120 39.130 2.52 0.00 38.18 3.16
3992 4446 4.219033 GCGTGAGGTTGTATTTTCACTTG 58.781 43.478 2.52 0.00 38.18 3.16
3995 4449 4.976116 GTGAGGTTGTATTTTCACTTGTGC 59.024 41.667 0.00 0.00 37.53 4.57
3997 4451 5.186996 AGGTTGTATTTTCACTTGTGCTG 57.813 39.130 0.00 0.00 0.00 4.41
3998 4452 4.037923 AGGTTGTATTTTCACTTGTGCTGG 59.962 41.667 0.00 0.00 0.00 4.85
4000 4454 4.566545 TGTATTTTCACTTGTGCTGGTG 57.433 40.909 0.00 0.00 35.06 4.17
4001 4455 3.951037 TGTATTTTCACTTGTGCTGGTGT 59.049 39.130 0.00 0.00 35.26 4.16
4002 4456 4.400884 TGTATTTTCACTTGTGCTGGTGTT 59.599 37.500 0.00 0.00 35.26 3.32
4003 4457 5.590663 TGTATTTTCACTTGTGCTGGTGTTA 59.409 36.000 0.00 0.00 35.26 2.41
4004 4458 4.630894 TTTTCACTTGTGCTGGTGTTAG 57.369 40.909 0.00 0.00 35.26 2.34
4006 4460 2.833794 TCACTTGTGCTGGTGTTAGAC 58.166 47.619 0.00 0.00 35.26 2.59
4007 4461 2.169561 TCACTTGTGCTGGTGTTAGACA 59.830 45.455 0.00 0.00 35.26 3.41
4008 4462 3.141398 CACTTGTGCTGGTGTTAGACAT 58.859 45.455 0.00 0.00 0.00 3.06
4009 4463 3.058708 CACTTGTGCTGGTGTTAGACATG 60.059 47.826 0.00 0.00 0.00 3.21
4013 4467 3.138304 GTGCTGGTGTTAGACATGACAA 58.862 45.455 0.00 0.00 0.00 3.18
4014 4468 3.187227 GTGCTGGTGTTAGACATGACAAG 59.813 47.826 0.00 0.00 0.00 3.16
4015 4469 2.744202 GCTGGTGTTAGACATGACAAGG 59.256 50.000 0.00 0.00 0.00 3.61
4016 4470 3.557054 GCTGGTGTTAGACATGACAAGGA 60.557 47.826 0.00 0.00 0.00 3.36
4017 4471 4.836825 CTGGTGTTAGACATGACAAGGAT 58.163 43.478 0.00 0.00 0.00 3.24
4018 4472 5.241403 TGGTGTTAGACATGACAAGGATT 57.759 39.130 0.00 0.00 0.00 3.01
4019 4473 5.245531 TGGTGTTAGACATGACAAGGATTC 58.754 41.667 0.00 0.00 0.00 2.52
4020 4474 4.330074 GGTGTTAGACATGACAAGGATTCG 59.670 45.833 0.00 0.00 0.00 3.34
4021 4475 4.929808 GTGTTAGACATGACAAGGATTCGT 59.070 41.667 0.00 0.00 0.00 3.85
4022 4476 4.929211 TGTTAGACATGACAAGGATTCGTG 59.071 41.667 0.00 0.00 36.27 4.35
4023 4477 2.977914 AGACATGACAAGGATTCGTGG 58.022 47.619 0.00 0.00 34.75 4.94
4024 4478 2.567169 AGACATGACAAGGATTCGTGGA 59.433 45.455 0.00 0.00 34.75 4.02
4025 4479 2.932614 GACATGACAAGGATTCGTGGAG 59.067 50.000 0.00 0.00 34.75 3.86
4026 4480 2.303022 ACATGACAAGGATTCGTGGAGT 59.697 45.455 0.00 0.00 34.75 3.85
4028 4482 1.691976 TGACAAGGATTCGTGGAGTGT 59.308 47.619 0.00 0.00 0.00 3.55
4029 4483 2.288825 TGACAAGGATTCGTGGAGTGTC 60.289 50.000 0.00 0.00 35.57 3.67
4030 4484 1.002087 ACAAGGATTCGTGGAGTGTCC 59.998 52.381 0.00 0.00 36.96 4.02
4032 4486 0.898320 AGGATTCGTGGAGTGTCCTG 59.102 55.000 0.00 0.00 37.88 3.86
4033 4487 0.608640 GGATTCGTGGAGTGTCCTGT 59.391 55.000 0.00 0.00 37.46 4.00
4034 4488 1.404315 GGATTCGTGGAGTGTCCTGTC 60.404 57.143 0.00 0.00 37.46 3.51
4035 4489 1.272490 GATTCGTGGAGTGTCCTGTCA 59.728 52.381 0.00 0.00 37.46 3.58
4036 4490 0.387929 TTCGTGGAGTGTCCTGTCAC 59.612 55.000 0.00 0.00 37.46 3.67
4037 4491 0.753848 TCGTGGAGTGTCCTGTCACA 60.754 55.000 0.00 0.00 40.37 3.58
4038 4492 0.319040 CGTGGAGTGTCCTGTCACAG 60.319 60.000 0.00 0.00 40.37 3.66
4040 4494 1.373497 GGAGTGTCCTGTCACAGCG 60.373 63.158 0.00 0.00 40.37 5.18
4041 4495 1.364171 GAGTGTCCTGTCACAGCGT 59.636 57.895 0.00 0.00 40.37 5.07
4042 4496 0.941463 GAGTGTCCTGTCACAGCGTG 60.941 60.000 0.00 2.79 40.37 5.34
4070 4664 7.864108 ATCAAAGCATACAACTTGCATACTA 57.136 32.000 0.00 0.00 42.62 1.82
4124 4718 2.751166 AGCTGCTCACTTGAACGTAT 57.249 45.000 0.00 0.00 0.00 3.06
4125 4719 3.868757 AGCTGCTCACTTGAACGTATA 57.131 42.857 0.00 0.00 0.00 1.47
4136 4730 6.361481 TCACTTGAACGTATATAGCGTATTGC 59.639 38.462 9.67 0.00 42.10 3.56
4237 4831 2.412112 GCACCTACCGGCGACTAG 59.588 66.667 9.30 6.53 0.00 2.57
4269 4863 2.415512 GTCCAGTTGCACGGAATTCTAC 59.584 50.000 5.23 0.00 31.67 2.59
4270 4864 2.037902 TCCAGTTGCACGGAATTCTACA 59.962 45.455 5.23 0.00 0.00 2.74
4328 4922 4.191662 ACGTACTTGCTTTGAAAGAACG 57.808 40.909 9.48 11.28 0.00 3.95
4367 4961 7.041440 GGAAGTCCTCTTTCTTTCTTCTTTCTG 60.041 40.741 0.00 0.00 33.64 3.02
4431 5025 1.262417 TCCACGTGTATCTTGGAGCA 58.738 50.000 15.65 0.00 39.15 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 83 2.191128 TCTTTTCCAAGAGCTGCTCC 57.809 50.000 25.09 8.38 33.80 4.70
154 157 2.267642 GACAGCGTGGCCCACATA 59.732 61.111 15.45 0.00 33.40 2.29
339 358 1.272769 GTACTTTGCCGAGAGTCACCT 59.727 52.381 0.00 0.00 0.00 4.00
346 365 0.883153 TACTGCGTACTTTGCCGAGA 59.117 50.000 0.00 0.00 0.00 4.04
498 518 1.826487 GGCAAACCCACCGTCACTT 60.826 57.895 0.00 0.00 0.00 3.16
499 519 2.203294 GGCAAACCCACCGTCACT 60.203 61.111 0.00 0.00 0.00 3.41
576 596 0.179468 ATACGCCGGGTGTAATGCTT 59.821 50.000 23.06 4.83 32.19 3.91
595 615 5.885912 GGCCTTCACTACTGGAATTTTCATA 59.114 40.000 0.00 0.00 0.00 2.15
618 638 0.248289 CTTGCTCCAGCCAAAATGGG 59.752 55.000 0.00 0.00 38.19 4.00
619 639 0.248289 CCTTGCTCCAGCCAAAATGG 59.752 55.000 0.00 0.00 41.55 3.16
620 640 0.248289 CCCTTGCTCCAGCCAAAATG 59.752 55.000 0.00 0.00 41.18 2.32
621 641 0.114954 TCCCTTGCTCCAGCCAAAAT 59.885 50.000 0.00 0.00 41.18 1.82
622 642 0.105760 TTCCCTTGCTCCAGCCAAAA 60.106 50.000 0.00 0.00 41.18 2.44
623 643 0.105760 TTTCCCTTGCTCCAGCCAAA 60.106 50.000 0.00 0.00 41.18 3.28
671 691 2.666812 GTACGGTCCACTTGGGGG 59.333 66.667 0.00 0.00 37.22 5.40
751 790 5.711036 ACTTGGACTAGTTAGGTGTACTCTG 59.289 44.000 0.00 0.00 0.00 3.35
752 791 5.711036 CACTTGGACTAGTTAGGTGTACTCT 59.289 44.000 12.35 0.00 0.00 3.24
820 864 6.073548 GGAGAAGAATGGCTACATGTTTATCG 60.074 42.308 2.30 0.00 37.40 2.92
898 961 1.349357 GGGAGAAGGCAGAAGAAGTGT 59.651 52.381 0.00 0.00 0.00 3.55
918 981 1.247567 GGAGGGATGTTGTGGTGTTG 58.752 55.000 0.00 0.00 0.00 3.33
923 986 1.746615 CGCTGGAGGGATGTTGTGG 60.747 63.158 0.00 0.00 0.00 4.17
943 1006 3.928992 AGACGAGCATGAGTAATGTGTTG 59.071 43.478 0.00 0.00 38.65 3.33
962 1025 4.083565 AGGACTTAGACAAGTGAGGAGAC 58.916 47.826 0.00 0.00 45.18 3.36
977 1040 5.338632 TGGATAAGAGTGTCCAAGGACTTA 58.661 41.667 19.20 10.20 41.70 2.24
1045 1108 0.036388 GAACATGGAGGAGCGTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
1047 1110 1.450312 GGAACATGGAGGAGCGTGG 60.450 63.158 0.00 0.00 0.00 4.94
1237 1369 6.817140 ACAGTAGTGAAAACCGGAATCTTATC 59.183 38.462 9.46 0.00 0.00 1.75
1263 1395 4.443598 GGCTTCTCTCTATTACCAACCCAG 60.444 50.000 0.00 0.00 0.00 4.45
1271 1403 5.471257 CGGGTATTGGCTTCTCTCTATTAC 58.529 45.833 0.00 0.00 0.00 1.89
1317 1449 2.805099 GCCATCGCTAGAGATTTTGAGG 59.195 50.000 6.20 5.89 0.00 3.86
1590 1770 4.102210 CCTGGATCAATCAGGCTCTTCTTA 59.898 45.833 3.86 0.00 44.29 2.10
1755 1953 1.519408 AACCTTTGGTCCGTGAATCG 58.481 50.000 0.00 0.00 33.12 3.34
1799 1997 3.844577 TGTAGTACTCCTCTTCGTTGC 57.155 47.619 0.00 0.00 0.00 4.17
1836 2034 9.152327 TCTAGTGATAATGTGGAAGATGATTCT 57.848 33.333 0.00 0.00 0.00 2.40
1998 2205 0.319083 AGAATGGACGTGCGTTACCA 59.681 50.000 14.92 4.00 36.83 3.25
2003 2210 0.037326 ATCACAGAATGGACGTGCGT 60.037 50.000 1.60 0.00 43.62 5.24
2004 2211 1.078709 AATCACAGAATGGACGTGCG 58.921 50.000 1.60 0.00 43.62 5.34
2447 2791 9.425893 CTAACAACATCACGAGCATTATTAAAG 57.574 33.333 0.00 0.00 0.00 1.85
2448 2792 8.941977 ACTAACAACATCACGAGCATTATTAAA 58.058 29.630 0.00 0.00 0.00 1.52
3159 3541 2.027100 ACCTGAATTTCTCCTTCCCGAC 60.027 50.000 0.00 0.00 0.00 4.79
3198 3598 7.610305 ACAGGGAAATATTCAACACGATAACTT 59.390 33.333 0.00 0.00 0.00 2.66
3578 4025 5.006941 CCATTGAAAAACAAGAGGCAGTTTG 59.993 40.000 0.00 0.00 42.02 2.93
3590 4037 9.646427 GTTACTATAATTGGCCATTGAAAAACA 57.354 29.630 6.09 0.00 0.00 2.83
3619 4066 0.037590 AAAGACGCCCCTACAATGCA 59.962 50.000 0.00 0.00 0.00 3.96
3638 4085 1.459348 TGTGTCCCTCCTGCTGACA 60.459 57.895 0.00 0.00 36.71 3.58
3649 4096 2.092323 GGAAATAGCTTGGTGTGTCCC 58.908 52.381 0.00 0.00 34.77 4.46
3653 4100 2.095059 GCAGTGGAAATAGCTTGGTGTG 60.095 50.000 0.00 0.00 0.00 3.82
3671 4118 3.434319 AAGCCGTTGATGCCGCAG 61.434 61.111 0.00 0.00 0.00 5.18
3675 4122 0.109597 CTGAACAAGCCGTTGATGCC 60.110 55.000 0.00 0.00 38.19 4.40
3678 4125 2.254546 TGACTGAACAAGCCGTTGAT 57.745 45.000 0.00 0.00 38.19 2.57
3685 4135 2.417933 CAGCCTGTATGACTGAACAAGC 59.582 50.000 0.00 0.00 34.05 4.01
3717 4167 2.856222 ACTTCAGAAACCAGCTCCAAG 58.144 47.619 0.00 0.00 0.00 3.61
3746 4196 5.606348 ATTTGGTTTGTTAAGGTTCAGCA 57.394 34.783 0.00 0.00 0.00 4.41
3770 4220 8.402798 TGCCAAAACTTGATTATCTGTTAAGA 57.597 30.769 5.10 0.00 36.69 2.10
3778 4228 5.713025 TGCTTCTGCCAAAACTTGATTATC 58.287 37.500 0.00 0.00 38.71 1.75
3795 4245 0.672342 CTTGTTGCTTGCCTGCTTCT 59.328 50.000 0.00 0.00 0.00 2.85
3797 4247 1.068127 CTTCTTGTTGCTTGCCTGCTT 59.932 47.619 0.00 0.00 0.00 3.91
3814 4264 1.673920 TGTTTTTCAGTGGACGCCTTC 59.326 47.619 0.00 0.00 0.00 3.46
3815 4265 1.404035 GTGTTTTTCAGTGGACGCCTT 59.596 47.619 0.00 0.00 0.00 4.35
3817 4267 0.030235 GGTGTTTTTCAGTGGACGCC 59.970 55.000 0.00 0.00 35.76 5.68
3830 4280 3.910627 AGGTCTGATTGTCCTAGGTGTTT 59.089 43.478 9.08 0.00 32.51 2.83
3871 4321 2.902705 TCAGCTTCGTTACTGTGGTT 57.097 45.000 0.00 0.00 35.37 3.67
3915 4365 6.098679 CCTATGTGCTATCTTGCTGTCTATC 58.901 44.000 0.00 0.00 0.00 2.08
3919 4369 2.805099 GCCTATGTGCTATCTTGCTGTC 59.195 50.000 0.00 0.00 0.00 3.51
3941 4391 8.757982 ATAAATGTGTAAATCATCCTGAGCTT 57.242 30.769 0.00 0.00 0.00 3.74
3957 4411 5.414454 ACAACCTCACGCATTATAAATGTGT 59.586 36.000 11.90 11.90 42.74 3.72
3958 4412 5.879237 ACAACCTCACGCATTATAAATGTG 58.121 37.500 10.74 10.74 35.78 3.21
3962 4416 8.731605 TGAAAATACAACCTCACGCATTATAAA 58.268 29.630 0.00 0.00 0.00 1.40
3963 4417 8.178964 GTGAAAATACAACCTCACGCATTATAA 58.821 33.333 0.00 0.00 0.00 0.98
3965 4419 6.374333 AGTGAAAATACAACCTCACGCATTAT 59.626 34.615 0.00 0.00 42.40 1.28
3967 4421 4.518970 AGTGAAAATACAACCTCACGCATT 59.481 37.500 0.00 0.00 42.40 3.56
3968 4422 4.072131 AGTGAAAATACAACCTCACGCAT 58.928 39.130 0.00 0.00 42.40 4.73
3969 4423 3.472652 AGTGAAAATACAACCTCACGCA 58.527 40.909 0.00 0.00 42.40 5.24
3970 4424 4.219033 CAAGTGAAAATACAACCTCACGC 58.781 43.478 0.00 0.00 42.40 5.34
3971 4425 5.204833 CACAAGTGAAAATACAACCTCACG 58.795 41.667 0.00 0.00 42.40 4.35
3972 4426 4.976116 GCACAAGTGAAAATACAACCTCAC 59.024 41.667 4.04 0.00 38.77 3.51
3974 4428 5.215160 CAGCACAAGTGAAAATACAACCTC 58.785 41.667 4.04 0.00 0.00 3.85
3975 4429 4.037923 CCAGCACAAGTGAAAATACAACCT 59.962 41.667 4.04 0.00 0.00 3.50
3976 4430 4.202111 ACCAGCACAAGTGAAAATACAACC 60.202 41.667 4.04 0.00 0.00 3.77
3977 4431 4.739716 CACCAGCACAAGTGAAAATACAAC 59.260 41.667 4.04 0.00 36.01 3.32
3978 4432 4.400884 ACACCAGCACAAGTGAAAATACAA 59.599 37.500 4.04 0.00 37.43 2.41
3979 4433 3.951037 ACACCAGCACAAGTGAAAATACA 59.049 39.130 4.04 0.00 37.43 2.29
3980 4434 4.568152 ACACCAGCACAAGTGAAAATAC 57.432 40.909 4.04 0.00 37.43 1.89
3981 4435 6.017440 GTCTAACACCAGCACAAGTGAAAATA 60.017 38.462 4.04 0.00 37.43 1.40
3982 4436 4.887071 TCTAACACCAGCACAAGTGAAAAT 59.113 37.500 4.04 0.00 37.43 1.82
3983 4437 4.095782 GTCTAACACCAGCACAAGTGAAAA 59.904 41.667 4.04 0.00 37.43 2.29
3984 4438 3.625764 GTCTAACACCAGCACAAGTGAAA 59.374 43.478 4.04 0.00 37.43 2.69
3985 4439 3.202906 GTCTAACACCAGCACAAGTGAA 58.797 45.455 4.04 0.00 37.43 3.18
3986 4440 2.169561 TGTCTAACACCAGCACAAGTGA 59.830 45.455 4.04 0.00 37.43 3.41
3987 4441 2.560504 TGTCTAACACCAGCACAAGTG 58.439 47.619 0.00 0.00 39.93 3.16
3989 4443 3.187227 GTCATGTCTAACACCAGCACAAG 59.813 47.826 0.00 0.00 0.00 3.16
3990 4444 3.138304 GTCATGTCTAACACCAGCACAA 58.862 45.455 0.00 0.00 0.00 3.33
3991 4445 2.103941 TGTCATGTCTAACACCAGCACA 59.896 45.455 0.00 0.00 0.00 4.57
3992 4446 2.766313 TGTCATGTCTAACACCAGCAC 58.234 47.619 0.00 0.00 0.00 4.40
3995 4449 4.271696 TCCTTGTCATGTCTAACACCAG 57.728 45.455 0.00 0.00 0.00 4.00
3997 4451 4.330074 CGAATCCTTGTCATGTCTAACACC 59.670 45.833 0.00 0.00 0.00 4.16
3998 4452 4.929808 ACGAATCCTTGTCATGTCTAACAC 59.070 41.667 0.00 0.00 0.00 3.32
4000 4454 4.330074 CCACGAATCCTTGTCATGTCTAAC 59.670 45.833 0.00 0.00 0.00 2.34
4001 4455 4.221924 TCCACGAATCCTTGTCATGTCTAA 59.778 41.667 0.00 0.00 0.00 2.10
4002 4456 3.767131 TCCACGAATCCTTGTCATGTCTA 59.233 43.478 0.00 0.00 0.00 2.59
4003 4457 2.567169 TCCACGAATCCTTGTCATGTCT 59.433 45.455 0.00 0.00 0.00 3.41
4004 4458 2.932614 CTCCACGAATCCTTGTCATGTC 59.067 50.000 0.00 0.00 0.00 3.06
4006 4460 2.674852 CACTCCACGAATCCTTGTCATG 59.325 50.000 0.00 0.00 0.00 3.07
4007 4461 2.303022 ACACTCCACGAATCCTTGTCAT 59.697 45.455 0.00 0.00 0.00 3.06
4008 4462 1.691976 ACACTCCACGAATCCTTGTCA 59.308 47.619 0.00 0.00 0.00 3.58
4009 4463 2.338500 GACACTCCACGAATCCTTGTC 58.662 52.381 0.00 0.00 0.00 3.18
4013 4467 0.898320 CAGGACACTCCACGAATCCT 59.102 55.000 0.00 0.00 39.61 3.24
4014 4468 0.608640 ACAGGACACTCCACGAATCC 59.391 55.000 0.00 0.00 39.61 3.01
4015 4469 1.272490 TGACAGGACACTCCACGAATC 59.728 52.381 0.00 0.00 39.61 2.52
4016 4470 1.000955 GTGACAGGACACTCCACGAAT 59.999 52.381 0.00 0.00 39.61 3.34
4017 4471 0.387929 GTGACAGGACACTCCACGAA 59.612 55.000 0.00 0.00 39.61 3.85
4018 4472 0.753848 TGTGACAGGACACTCCACGA 60.754 55.000 0.00 0.00 39.61 4.35
4019 4473 0.319040 CTGTGACAGGACACTCCACG 60.319 60.000 4.28 0.00 39.61 4.94
4020 4474 0.601311 GCTGTGACAGGACACTCCAC 60.601 60.000 15.24 0.00 39.61 4.02
4021 4475 1.748403 GCTGTGACAGGACACTCCA 59.252 57.895 15.24 0.00 39.61 3.86
4022 4476 1.373497 CGCTGTGACAGGACACTCC 60.373 63.158 15.24 0.00 40.87 3.85
4023 4477 0.941463 CACGCTGTGACAGGACACTC 60.941 60.000 15.24 0.00 40.87 3.51
4024 4478 1.068083 CACGCTGTGACAGGACACT 59.932 57.895 15.24 0.00 40.87 3.55
4025 4479 1.227263 ACACGCTGTGACAGGACAC 60.227 57.895 15.24 0.00 40.68 3.67
4026 4480 3.216237 ACACGCTGTGACAGGACA 58.784 55.556 15.24 0.00 36.96 4.02
4035 4489 1.877637 TGCTTTGATACACACGCTGT 58.122 45.000 0.00 0.00 36.82 4.40
4036 4490 3.370672 TGTATGCTTTGATACACACGCTG 59.629 43.478 0.00 0.00 34.53 5.18
4037 4491 3.595173 TGTATGCTTTGATACACACGCT 58.405 40.909 0.00 0.00 34.53 5.07
4038 4492 4.088648 GTTGTATGCTTTGATACACACGC 58.911 43.478 0.00 0.00 38.31 5.34
4040 4494 5.569059 GCAAGTTGTATGCTTTGATACACAC 59.431 40.000 4.48 0.00 38.31 3.82
4041 4495 5.240403 TGCAAGTTGTATGCTTTGATACACA 59.760 36.000 4.48 0.00 44.14 3.72
4042 4496 5.698832 TGCAAGTTGTATGCTTTGATACAC 58.301 37.500 4.48 0.00 44.14 2.90
4044 4498 7.697691 AGTATGCAAGTTGTATGCTTTGATAC 58.302 34.615 16.67 5.22 44.14 2.24
4045 4499 7.864108 AGTATGCAAGTTGTATGCTTTGATA 57.136 32.000 16.67 0.00 44.14 2.15
4047 4501 6.652900 TGTAGTATGCAAGTTGTATGCTTTGA 59.347 34.615 24.69 8.86 44.14 2.69
4070 4664 0.035439 CTAGGTTTCGGCCACCATGT 60.035 55.000 12.97 0.00 36.67 3.21
4136 4730 3.415457 AGGAGAAACTGAAAGCCAGAG 57.585 47.619 0.00 0.00 45.78 3.35
4236 4830 3.007940 TGCAACTGGACACTATACAAGCT 59.992 43.478 0.00 0.00 0.00 3.74
4237 4831 3.125316 GTGCAACTGGACACTATACAAGC 59.875 47.826 0.00 0.00 36.33 4.01
4238 4832 3.367932 CGTGCAACTGGACACTATACAAG 59.632 47.826 2.19 0.00 36.05 3.16
4239 4833 3.322369 CGTGCAACTGGACACTATACAA 58.678 45.455 2.19 0.00 36.05 2.41
4328 4922 4.523558 AGAGGACTTCCAGTAGTTGTGTAC 59.476 45.833 0.00 0.00 38.89 2.90
4400 4994 1.362717 ACGTGGAGTGAGGTTGTCG 59.637 57.895 0.00 0.00 0.00 4.35
4431 5025 5.188434 CCAGTCCAATCATGTACTCACAAT 58.812 41.667 0.00 0.00 38.42 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.